zr1394_7_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11185562 lines in total Total number of methylation call strings processed: 11185562 Final Cytosine Methylation Report ================================= Total number of C's analysed: 67296159 Total methylated C's in CpG context: 8280867 Total methylated C's in CHG context: 320066 Total methylated C's in CHH context: 4022598 Total C to T conversions in CpG context: 1816175 Total C to T conversions in CHG context: 12931899 Total C to T conversions in CHH context: 39924554 C methylated in CpG context: 82.0% C methylated in CHG context: 2.4% C methylated in CHH context: 9.2%