zr1394_9_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 17326303 lines in total Total number of methylation call strings processed: 17326303 Final Cytosine Methylation Report ================================= Total number of C's analysed: 101202142 Total methylated C's in CpG context: 10096631 Total methylated C's in CHG context: 405216 Total methylated C's in CHH context: 6066529 Total C to T conversions in CpG context: 2793392 Total C to T conversions in CHG context: 18757453 Total C to T conversions in CHH context: 63082921 C methylated in CpG context: 78.3% C methylated in CHG context: 2.1% C methylated in CHH context: 8.8%