FastQCFastQC Report
Fri 6 Jul 2018
geoduck_hic_make_S3HiC_R2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamegeoduck_hic_make_S3HiC_R2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542270588
Sequences flagged as poor quality0
Sequence length35-151
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG18383140.33900308087518843Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)