20180830_oly_WGBSseq_trimming

This directory contains trimmed Olympia oyster, whole genome bisulfite sequencing data, as well as before/after FastQC information.

Data was trimmed (TrimGalore!, 10bp 5') in preparation for analysis in Bismark. Trimming settings were based on TruSeq library construction.

Data set info is here:

- https://github.com/RobertsLab/project-olympia.oyster-genomic/wiki

Notebook entry:

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FILES

- 20180830_oly_WGBSseq_trimming.sh: Mox SBATCH script for FastQC/MultiQC/TrimGalore!/MultiQC/FastQC/MultiQC pipeline.

- slurm-300276.out: Mox output log. 

- system_path.log: A text file attempting to document various program versions being used by Mox.