8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 5254069 lines in total Total number of methylation call strings processed: 5254069 Final Cytosine Methylation Report ================================= Total number of C's analysed: 40803149 Total methylated C's in CpG context: 1505771 Total methylated C's in CHG context: 94962 Total methylated C's in CHH context: 637425 Total C to T conversions in CpG context: 4493288 Total C to T conversions in CHG context: 7963072 Total C to T conversions in CHH context: 26108631 C methylated in CpG context: 25.1% C methylated in CHG context: 1.2% C methylated in CHH context: 2.4%