File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam 9365330 4058611 2378548 2920677 7494 480947 3577664 27812307 1140747 2936638 57205 5420555 414147 17843015 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam 11879398 5113960 3005093 3750735 9610 671077 4442883 34519408 1380762 3653736 127563 6640673 739993 21976681 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam 11758842 5058630 3039170 3651733 9309 686276 4372354 33917731 1390211 3581340 64748 6623022 479856 21778554 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam 11560658 5028901 2902106 3620367 9284 625266 4403635 34066959 1413462 3554680 62408 6618660 464293 21953456 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam 12502181 5346370 3233277 3912611 9923 724884 4621486 35857124 1440846 3832468 83827 7004913 585583 22909487 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam 12409649 5259096 3275362 3865177 10014 686997 4572099 35429382 1382430 3816671 107063 6864976 685268 22572974 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam 10253191 4426715 2594667 3223454 8355 496746 3929969 30439239 1204918 3248204 55273 5929753 425007 19576084 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam 14269815 6086201 3681763 4490423 11428 832132 5254069 40803149 1505771 4493288 94962 7963072 637425 26108631