2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 5298954 lines in total Total number of methylation call strings processed: 5298954 Final Cytosine Methylation Report ================================= Total number of C's analysed: 40962986 Total methylated C's in CpG context: 1562313 Total methylated C's in CHG context: 168829 Total methylated C's in CHH context: 1402349 Total C to T conversions in CpG context: 4277543 Total C to T conversions in CHG context: 7678029 Total C to T conversions in CHH context: 25873923 C methylated in CpG context: 26.8% C methylated in CHG context: 2.2% C methylated in CHH context: 5.1%