5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 5536881 lines in total Total number of methylation call strings processed: 5536881 Final Cytosine Methylation Report ================================= Total number of C's analysed: 42722256 Total methylated C's in CpG context: 1637553 Total methylated C's in CHG context: 120623 Total methylated C's in CHH context: 1293128 Total C to T conversions in CpG context: 4495929 Total C to T conversions in CHG context: 8119549 Total C to T conversions in CHH context: 27055474 C methylated in CpG context: 26.7% C methylated in CHG context: 1.5% C methylated in CHH context: 4.6%