7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 4694994 lines in total Total number of methylation call strings processed: 4694994 Final Cytosine Methylation Report ================================= Total number of C's analysed: 36167085 Total methylated C's in CpG context: 1367537 Total methylated C's in CHG context: 82509 Total methylated C's in CHH context: 984228 Total C to T conversions in CpG context: 3801524 Total C to T conversions in CHG context: 6865817 Total C to T conversions in CHH context: 23065470 C methylated in CpG context: 26.5% C methylated in CHG context: 1.2% C methylated in CHH context: 4.1%