owl/Athaliana/20180924_oly_RNAseq_bedgraphs Conversion of Olympia oyster transcriptome BAM (from 20180919) file to bedgraph format. -------------------------------------------------------------------------------- FILES: - 20180924_oly_RNAseq.bam.bed: Conversion of BAM to BED file format using bedtools bamToBed tool. This is an intermediate file; used as input for bedtools genomeCoverageBed tool. - 20180924_oly_RNAseq.bed: Olympia oyster transcriptome bedgraph file. - 20180924_oly_RNAseq_bedgraphs.sh: Mox batch script submission file. This is a text file containing the commands used to convert BAM to bedgraph format, as well as produce/format a properly indexed genome file for use with bedtools. - Olurida_v081.fa.fai.genome: Genome file used in the bedtools genomeCoverageBed. This was generated with the samtools faidx tool to index the Olympia oyster genome from a FastA file. - slurm-321627.out: The Mox standard output file. - system_path.log: A text file attempting to document various program versions being used by Mox.