All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Suggestion: assembly scaffolds.reduced contains continuous fragments of N's of length >= 10 bp. You may consider rerunning QUAST using --scaffolds (-s) option! Assembly scaffolds.reduced # contigs (>= 0 bp) 7408 # contigs (>= 1000 bp) 7408 # contigs (>= 5000 bp) 7270 # contigs (>= 10000 bp) 4127 # contigs (>= 25000 bp) 823 # contigs (>= 50000 bp) 216 Total length (>= 0 bp) 111139362 Total length (>= 1000 bp) 111139362 Total length (>= 5000 bp) 110651100 Total length (>= 10000 bp) 86479013 Total length (>= 25000 bp) 37385867 Total length (>= 50000 bp) 17006058 # contigs 7408 Largest contig 256714 Total length 111139362 GC (%) 36.34 N50 16998 N75 10536 L50 1724 L75 3823 # N's per 100 kbp 626.41