All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Suggestion: assemblies jelly.out, Oly_Redundans_Output_scaffolds.reduced, Oly_Redundans_Output_Try_2_scaffolds.reduced, 20171005_redundans_scaffolds.reduced, 20171004_redundans_scaffolds.reduced, 20171024_docker_oly_redundans_01_scaffolds.reduced, Ostrea_lurida contain continuous fragments of N's of length >= 10 bp. You may consider rerunning QUAST using --scaffolds (-s) option! Assembly # contigs (>= 0 bp) # contigs (>= 1000 bp) # contigs (>= 5000 bp) # contigs (>= 10000 bp) # contigs (>= 25000 bp) # contigs (>= 50000 bp) Total length (>= 0 bp) Total length (>= 1000 bp) Total length (>= 5000 bp) Total length (>= 10000 bp) Total length (>= 25000 bp) Total length (>= 50000 bp) # contigs Largest contig Total length GC (%) N50 N75 L50 L75 # N's per 100 kbp oly_pacbio_.contigs 3388 3388 3338 2662 119 3 46288879 46288879 46112108 40284040 3651638 174603 3388 61184 46288879 36.45 14117 11415 1230 2145 0.00 20171018_oly_pacbio.contigs 11246 11246 10751 5469 547 17 132146852 132146852 130500089 90550146 17592727 940167 11246 76280 132146852 36.40 13157 9066 3329 6369 0.00 jelly.out 765755 184804 33792 8733 553 21 776306190 642346712 302087694 131223850 17851807 1283294 259186 130073 697528655 35.83 4204 2078 43989 103370 19162.18 Oly_Illumina_Platanus_Assembly_Oly_Out__contig 193390 0 0 0 0 0 16949361 0 0 0 0 0 4 764 2693 46.05 684 644 2 3 0.00 Oly_Platanus_Assembly_Kmer-22_Oly_Out__contig 12395459 141851 2631 157 0 0 1633553496 257934533 17549692 1977623 0 0 373312 23341 417951161 35.70 1245 784 97869 204757 0.00 20170918_oly_pacbio_racon1_consensus 2896 2776 2492 1715 88 2 33496662 33421961 32715909 26428099 2808408 127712 2856 68522 33483762 36.43 13763 10543 896 1588 0.00 Oly_Redundans_Output_scaffolds.reduced 3642 18 0 0 0 0 968128 25115 0 0 0 0 114 3063 85207 36.24 682 569 40 74 17127.70 Oly_Redundans_Output_Try_2_scaffolds.reduced 300593 137301 24009 6254 586 36 546928670 476206320 220366692 99646272 19574809 2106424 188612 78788 513841258 35.90 4175 2103 32022 75613 1019.31 20171005_redundans_scaffolds.reduced 2078 1971 1744 1202 204 66 29303793 29235249 28679494 24316776 9732934 5126002 2045 252259 29292260 36.39 16565 11605 452 984 918.03 20171004_redundans_scaffolds.reduced 2315 2315 2282 1811 304 91 40561504 40561504 40443936 36412694 14794719 7662042 2315 322397 40561504 36.46 17679 12211 573 1274 695.24 20171024_docker_oly_redundans_01_scaffolds.reduced 7408 7408 7270 4127 823 216 111139362 111139362 110651100 86479013 37385867 17006058 7408 256714 111139362 36.34 16998 10536 1724 3823 626.41 Ostrea_lurida 765755 184804 33792 8733 553 21 776306190 642346712 302087694 131223850 17851807 1283294 259186 130073 697528655 35.83 4204 2078 43989 103370 19149.50