/home/sam/software/quast-4.5/quast.py -t 24 /mnt/owl/Athaliana/20171130_oly_pbjelly/jelly.out.fasta

Version: 4.5, 15ca3b9

System information:
  OS: Linux-4.4.0-109-generic-x86_64-with-Ubuntu-16.04-xenial (linux_64)
  Python version: 2.7.12
  CPUs number: 24

Started: 2018-01-16 09:35:09

Logging to /home/sam/gitrepos/LabDocs/jupyter_nbs/sam/quast_results/results_2018_01_16_09_35_09/quast.log

CWD: /home/sam/gitrepos/LabDocs/jupyter_nbs/sam
Main parameters: 
  Threads: 24, minimum contig length: 500, ambiguity: one, threshold for extensive misassembly size: 1000

WARNING: Can't draw plots: python-matplotlib is missing or corrupted.

Contigs:
  Pre-processing...
  /mnt/owl/Athaliana/20171130_oly_pbjelly/jelly.out.fasta ==> jelly.out

2018-01-16 09:36:13
Running Basic statistics processor...
  Contig files: 
    jelly.out
  Calculating N50 and L50...
    jelly.out, N50 = 12433, L50 = 26241, Total length = 1180563613, GC % = 36.57, # N's per 100 kbp =  6580.58
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it.

2018-01-16 09:37:14
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 1: Creating Icarus viewers...
Done

2018-01-16 09:37:32
RESULTS:
  Text versions of total report are saved to /home/sam/gitrepos/LabDocs/jupyter_nbs/sam/quast_results/results_2018_01_16_09_35_09/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/sam/gitrepos/LabDocs/jupyter_nbs/sam/quast_results/results_2018_01_16_09_35_09/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) saved to /home/sam/gitrepos/LabDocs/jupyter_nbs/sam/quast_results/results_2018_01_16_09_35_09/report.html
  Icarus (contig browser) is saved to /home/sam/gitrepos/LabDocs/jupyter_nbs/sam/quast_results/results_2018_01_16_09_35_09/icarus.html
  Log saved to /home/sam/gitrepos/LabDocs/jupyter_nbs/sam/quast_results/results_2018_01_16_09_35_09/quast.log

Finished: 2018-01-16 09:37:32
Elapsed time: 0:02:23.101954
NOTICEs: 1; WARNINGs: 1; non-fatal ERRORs: 0

Thank you for using QUAST!