All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Suggestion: assemblies jelly.out, Oly_Redundans_Output_scaffolds.reduced, Oly_Redundans_Output_Try_2_scaffolds.reduced, 20171005_redundans_scaffolds.reduced, 20171004_redundans_scaffolds.reduced, 20171024_docker_oly_redundans_01_scaffolds.reduced, Ostrea_lurida contain continuous fragments of N's of length >= 10 bp. You may consider rerunning QUAST using --scaffolds (-s) option! Assembly oly_pacbio_.contigs 20171018_oly_pacbio.contigs jelly.out Oly_Illumina_Platanus_Assembly_Oly_Out__contig Oly_Platanus_Assembly_Kmer-22_Oly_Out__contig 20170918_oly_pacbio_racon1_consensus Oly_Redundans_Output_scaffolds.reduced Oly_Redundans_Output_Try_2_scaffolds.reduced 20171005_redundans_scaffolds.reduced 20171004_redundans_scaffolds.reduced 20171024_docker_oly_redundans_01_scaffolds.reduced Ostrea_lurida # contigs (>= 0 bp) 3388 11246 696946 193390 12395459 2896 3642 300593 2078 2315 7408 765755 # contigs (>= 1000 bp) 3388 11246 159429 0 141851 2776 18 137301 1971 2315 7408 184804 # contigs (>= 5000 bp) 3338 10751 68750 0 2631 2492 0 24009 1744 2282 7270 33792 # contigs (>= 10000 bp) 2662 5469 35320 0 157 1715 0 6254 1202 1811 4127 8733 # contigs (>= 25000 bp) 119 547 7048 0 0 88 0 586 204 304 823 553 # contigs (>= 50000 bp) 3 17 894 0 0 2 0 36 66 91 216 21 Total length (>= 0 bp) 46288879 132146852 1253001795 16949361 1633553496 33496662 968128 546928670 29303793 40561504 111139362 776306190 Total length (>= 1000 bp) 46288879 132146852 1140787867 0 257934533 33421961 25115 476206320 29235249 40561504 111139362 642346712 Total length (>= 5000 bp) 46112108 130500089 932263178 0 17549692 32715909 0 220366692 28679494 40443936 110651100 302087694 Total length (>= 10000 bp) 40284040 90550146 691523275 0 1977623 26428099 0 99646272 24316776 36412694 86479013 131223850 Total length (>= 25000 bp) 3651638 17592727 261425921 0 0 2808408 0 19574809 9732934 14794719 37385867 17851807 Total length (>= 50000 bp) 174603 940167 57741906 0 0 127712 0 2106424 5126002 7662042 17006058 1283294 # contigs 3388 11246 213264 4 373312 2856 114 188612 2045 2315 7408 259186 Largest contig 61184 76280 194507 764 23341 68522 3063 78788 252259 322397 256714 130073 Total length 46288879 132146852 1180563613 2693 417951161 33483762 85207 513841258 29292260 40561504 111139362 697528655 GC (%) 36.45 36.40 36.57 46.05 35.70 36.43 36.24 35.90 36.39 36.46 36.34 35.83 N50 14117 13157 12433 684 1245 13763 682 4175 16565 17679 16998 4204 N75 11415 9066 5983 644 784 10543 569 2103 11605 12211 10536 2078 L50 1230 3329 26241 2 97869 896 40 32022 452 573 1724 43989 L75 2145 6369 60202 3 204757 1588 74 75613 984 1274 3823 103370 # N's per 100 kbp 0.00 0.00 6580.58 0.00 0.00 0.00 17127.70 1019.31 918.03 695.24 626.41 19149.50