/home/sam/software/quast-4.5/quast.py -t 16 /mnt/owl/Athaliana/20180322_SparseAssembler_novaseq_geoduck/Contigs.txt Version: 4.5, 15ca3b9 System information: OS: Linux-4.4.0-112-generic-x86_64-with-Ubuntu-16.04-xenial (linux_64) Python version: 2.7.12 CPUs number: 24 Started: 2018-03-27 08:25:52 Logging to /home/sam/software/quast-4.5/quast_results/results_2018_03_27_08_25_52/quast.log CWD: /home/sam/software/quast-4.5 Main parameters: Threads: 16, minimum contig length: 500, ambiguity: one, threshold for extensive misassembly size: 1000 WARNING: Can't draw plots: python-matplotlib is missing or corrupted. Contigs: Pre-processing... /mnt/owl/Athaliana/20180322_SparseAssembler_novaseq_geoduck/Contigs.txt ==> Contigs.txt 2018-03-27 08:37:55 Running Basic statistics processor... Contig files: Contigs.txt Calculating N50 and L50... Contigs.txt, N50 = 1149, L50 = 290357, Total length = 1255204057, GC % = 33.99, # N's per 100 kbp = 0.00 Done. NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it. 2018-03-27 08:39:11 Creating large visual summaries... This may take a while: press Ctrl-C to skip this step.. 1 of 1: Creating Icarus viewers... Done 2018-03-27 08:39:42 RESULTS: Text versions of total report are saved to /home/sam/software/quast-4.5/quast_results/results_2018_03_27_08_25_52/report.txt, report.tsv, and report.tex Text versions of transposed total report are saved to /home/sam/software/quast-4.5/quast_results/results_2018_03_27_08_25_52/transposed_report.txt, transposed_report.tsv, and transposed_report.tex HTML version (interactive tables and plots) saved to /home/sam/software/quast-4.5/quast_results/results_2018_03_27_08_25_52/report.html Icarus (contig browser) is saved to /home/sam/software/quast-4.5/quast_results/results_2018_03_27_08_25_52/icarus.html Log saved to /home/sam/software/quast-4.5/quast_results/results_2018_03_27_08_25_52/quast.log Finished: 2018-03-27 08:39:42 Elapsed time: 0:13:50.272647 NOTICEs: 1; WARNINGs: 1; non-fatal ERRORs: 0 Thank you for using QUAST!