/home/sam/software/quast-4.5/quast.py -t 24 /mnt/owl/Athaliana/20180405_sparseassembler_kmer101_geoduck/Contigs.txt

Version: 4.5, 15ca3b9

System information:
  OS: Linux-4.4.0-119-generic-x86_64-with-Ubuntu-16.04-xenial (linux_64)
  Python version: 2.7.12
  CPUs number: 24

Started: 2018-04-15 13:45:03

Logging to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/quast.log

CWD: /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck
Main parameters: 
  Threads: 24, minimum contig length: 500, ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  /mnt/owl/Athaliana/20180405_sparseassembler_kmer101_geoduck/Contigs.txt ==> Contigs.txt

2018-04-15 13:49:12
Running Basic statistics processor...
  Contig files: 
    Contigs.txt
  Calculating N50 and L50...
    Contigs.txt, N50 = 1241, L50 = 265572, Total length = 1315630106, GC % = 33.99, # N's per 100 kbp =  0.00
  Drawing Nx plot...
    saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/basic_stats/GC_content_plot.pdf
  Drawing Contigs.txt GC content plot...
    saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/basic_stats/Contigs.txt_GC_content_plot.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it.

2018-04-15 13:50:36
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2018-04-15 13:51:08
RESULTS:
  Text versions of total report are saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/report.html
  PDF version (tables and plots) is saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/report.pdf
  Icarus (contig browser) is saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/icarus.html
  Log saved to /home/sam/sparse_assembler/20180405_sparseassembler_kmer101_geoduck/quast_results/results_2018_04_15_13_45_03/quast.log

Finished: 2018-04-15 13:51:08
Elapsed time: 0:06:05.049237
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!