/home/sam/software/quast-4.5/quast.py -t 24 --labels 20180403_pga,20180421_pga /mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts results 2018-04-03 11:05:41.596285/PGA_assembly.fasta /mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts results 2018-04-21 18:09:04.514704/PGA_assembly.fasta

Version: 4.5, 15ca3b9

System information:
  OS: Linux-4.4.0-121-generic-x86_64-with-Ubuntu-16.04-xenial (linux_64)
  Python version: 2.7.12
  CPUs number: 24

Started: 2018-04-30 11:16:04

Logging to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/quast.log

CWD: /home/sam/Downloads
Main parameters: 
  Threads: 24, minimum contig length: 500, ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  1  /mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts results 2018-04-03 11:05:41.596285/PGA_assembly.fasta ==> 20180403_pga
  2  /mnt/owl/Athaliana/20180421_geoduck_hi-c/Results/geoduck_roberts results 2018-04-21 18:09:04.514704/PGA_assembly.fasta ==> 20180421_pga

2018-04-30 11:19:02
Running Basic statistics processor...
  Contig files: 
    1  20180403_pga
    2  20180421_pga
  Calculating N50 and L50...
    1  20180403_pga, N50 = 43382739, L50 = 18, Total length = 2205690888, GC % = 33.92, # N's per 100 kbp =  9142.81
    2  20180421_pga, N50 = 43382739, L50 = 18, Total length = 2205690788, GC % = 33.92, # N's per 100 kbp =  9142.81
  Drawing Nx plot...
    saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/basic_stats/GC_content_plot.pdf
  Drawing 20180403_pga GC content plot...
    saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/basic_stats/20180403_pga_GC_content_plot.pdf
  Drawing 20180421_pga GC content plot...
    saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/basic_stats/20180421_pga_GC_content_plot.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it.

2018-04-30 11:22:42
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2018-04-30 11:23:44
RESULTS:
  Text versions of total report are saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/report.html
  PDF version (tables and plots) is saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/report.pdf
  Icarus (contig browser) is saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/icarus.html
  Log saved to /home/sam/Downloads/quast_results/results_2018_04_30_11_16_04/quast.log

Finished: 2018-04-30 11:23:44
Elapsed time: 0:07:40.650404
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!