/home/sam/software/quast-4.5/quast.py -t 24 --labels 20180423_sparse_k95 /mnt/owl/Athaliana/20180423_sparseassembler_kmer95_geoduck/Contigs.txt

Version: 4.5, 15ca3b9

System information:
  OS: Linux-4.4.0-124-generic-x86_64-with-Ubuntu-16.04-xenial (linux_64)
  Python version: 2.7.12
  CPUs number: 24

Started: 2018-05-10 15:04:07

Logging to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/quast.log

CWD: /home/sam/software/quast-4.5
Main parameters: 
  Threads: 24, minimum contig length: 500, ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  /mnt/owl/Athaliana/20180423_sparseassembler_kmer95_geoduck/Contigs.txt ==> 20180423_sparse_k95

2018-05-10 15:19:20
Running Basic statistics processor...
  Contig files: 
    20180423_sparse_k95
  Calculating N50 and L50...
    20180423_sparse_k95, N50 = 1071, L50 = 279744, Total length = 1087470628, GC % = 33.75, # N's per 100 kbp =  0.00
  Drawing Nx plot...
    saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/basic_stats/GC_content_plot.pdf
  Drawing 20180423_sparse_k95 GC content plot...
    saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/basic_stats/20180423_sparse_k95_GC_content_plot.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it.

2018-05-10 15:20:29
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2018-05-10 15:20:56
RESULTS:
  Text versions of total report are saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/report.html
  PDF version (tables and plots) is saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/report.pdf
  Icarus (contig browser) is saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/icarus.html
  Log saved to /home/sam/software/quast-4.5/quast_results/results_2018_05_10_15_04_07/quast.log

Finished: 2018-05-10 15:20:57
Elapsed time: 0:16:49.594214
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!