/home/sam/programs/quast-5.0.2/quast.py -t 24 Pgenerosa_v070.fa

Version: 5.0.2

System information:
  OS: Linux-4.4.0-141-generic-x86_64-with-debian-stretch-sid (linux_64)
  Python version: 3.7.2
  CPUs number: 24

Started: 2019-02-19 15:35:35

Logging to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/quast.log

CWD: /home/sam/data/P_generosa/genomes
Main parameters: 
  MODE: default, threads: 24, minimum contig length: 500, minimum alignment length: 65, \
  ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  Pgenerosa_v070.fa ==> Pgenerosa_v070

2019-02-19 15:37:14
Running Basic statistics processor...
  Contig files: 
    Pgenerosa_v070
  Calculating N50 and L50...
    Pgenerosa_v070, N50 = 6194822, L50 = 31, Total length = 2205688688, GC % = 33.92, # N's per 100 kbp =  9142.72
  Drawing Nx plot...
    saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/basic_stats/GC_content_plot.pdf
  Drawing Pgenerosa_v070 GC content plot...
    saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/basic_stats/Pgenerosa_v070_GC_content_plot.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding or --glimmer option to enable it.

2019-02-19 15:39:27
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2019-02-19 15:40:00
RESULTS:
  Text versions of total report are saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) is saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/report.html
  PDF version (tables and plots) is saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/report.pdf
  Icarus (contig browser) is saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/icarus.html
  Log is saved to /home/sam/data/P_generosa/genomes/quast_results/results_2019_02_19_15_35_35/quast.log

Finished: 2019-02-19 15:40:00
Elapsed time: 0:04:25.648059
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!