/home/sam/programs/quast-5.0.2/quast.py -t 24 Olurida_v080.fa Version: 5.0.2 System information: OS: Linux-4.4.0-141-generic-x86_64-with-debian-stretch-sid (linux_64) Python version: 3.7.2 CPUs number: 24 Started: 2019-02-19 16:10:23 Logging to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/quast.log CWD: /home/sam/data/O_lurida/genomes Main parameters: MODE: default, threads: 24, minimum contig length: 500, minimum alignment length: 65, \ ambiguity: one, threshold for extensive misassembly size: 1000 Contigs: Pre-processing... Olurida_v080.fa ==> Olurida_v080 2019-02-19 16:10:59 Running Basic statistics processor... Contig files: Olurida_v080 Calculating N50 and L50... Olurida_v080, N50 = 12433, L50 = 26241, Total length = 1180563613, GC % = 36.57, # N's per 100 kbp = 6580.58 Drawing Nx plot... saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/basic_stats/Nx_plot.pdf Drawing cumulative plot... saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/basic_stats/cumulative_plot.pdf Drawing GC content plot... saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/basic_stats/GC_content_plot.pdf Drawing Olurida_v080 GC content plot... saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/basic_stats/Olurida_v080_GC_content_plot.pdf Done. NOTICE: Genes are not predicted by default. Use --gene-finding or --glimmer option to enable it. 2019-02-19 16:12:07 Creating large visual summaries... This may take a while: press Ctrl-C to skip this step.. 1 of 2: Creating Icarus viewers... 2 of 2: Creating PDF with all tables and plots... Done 2019-02-19 16:12:24 RESULTS: Text versions of total report are saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/report.txt, report.tsv, and report.tex Text versions of transposed total report are saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/transposed_report.txt, transposed_report.tsv, and transposed_report.tex HTML version (interactive tables and plots) is saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/report.html PDF version (tables and plots) is saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/report.pdf Icarus (contig browser) is saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/icarus.html Log is saved to /home/sam/data/O_lurida/genomes/quast_results/results_2019_02_19_16_10_23/quast.log Finished: 2019-02-19 16:12:24 Elapsed time: 0:02:00.319863 NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0 Thank you for using QUAST!