Owl/web/P_generosa_genome_assemblies_BGI/20160512

This directory contains the files provided by BGI from their second genome assembly attempt.

checksums.md5 - MD5 checksum file generated by Sam White for consistency across all of our sequencing data directories.

Genome_survey_report.pdf - Report detailing how assembly was performed, along with metrics used to assess assembly.

md5.txt - BGI file containing md5 checksums for all files provided.

Panopea_generosa.GC_content_vs_depth.png - BGI image file of their assembly evaluation.

Panopea_generosa.scafSeq - BGI assembly.

README - Generated by BGI. Maps out original directory layout and descriptions.


Illumina FASTQ sequencing data files provided by BGI are listed below

| FILENAME                                                              | READS    |
|-----------------------------------------------------------------------|----------|
| 151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1.fq.gz.clean.dup.clean.gz | 94337047 |
| 151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_2.fq.gz.clean.dup.clean.gz | 94337047 |
| 151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_1.fq.gz.clean.dup.clean.gz | 72605592 |
| 151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2.fq.gz.clean.dup.clean.gz | 72605592 |
| 151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1.fq.gz.clean.dup.clean.gz | 77590326 |
| 151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_2.fq.gz.clean.dup.clean.gz | 77590326 |