Basic Statistics
Measure | Value |
---|---|
Filename | filtered_106A_Female_Mix_GATCAG_L007_R1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 39233599 |
Sequences flagged as poor quality | 0 |
Sequence length | 36 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAT | 1428104 | 3.640002539659948 | TruSeq Adapter, Index 9 (100% over 36bp) |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGA | 222412 | 0.5668916583462047 | TruSeq Adapter, Index 7 (97% over 35bp) |
CCCTGATTCAACATCGAGGTGCCAATCCCACTAGCC | 60776 | 0.1549080419565893 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCACGAT | 160975 | 0.0 | 28.058882 | 30 |
AGATCGG | 27185 | 0.0 | 25.86958 | 1 |
GCACACG | 181445 | 0.0 | 25.43811 | 11 |
GATCGGA | 179525 | 0.0 | 25.41182 | 1 |
CGGAAGA | 183725 | 0.0 | 25.273731 | 4 |
TCGGAAG | 180950 | 0.0 | 25.235193 | 3 |
CACACGT | 183145 | 0.0 | 25.180695 | 12 |
AGAGCAC | 184100 | 0.0 | 25.166656 | 8 |
CACGTCT | 183370 | 0.0 | 25.130985 | 14 |
ACACGTC | 183745 | 0.0 | 25.127039 | 13 |
AGCACAC | 184165 | 0.0 | 25.118631 | 10 |
ATCGGAA | 182030 | 0.0 | 25.07636 | 2 |
GAGCACA | 184685 | 0.0 | 25.063387 | 9 |
GAAGAGC | 185840 | 0.0 | 24.94394 | 6 |
CGTCTGA | 185200 | 0.0 | 24.839737 | 16 |
ACGTCTG | 185700 | 0.0 | 24.78578 | 15 |
AAGAGCA | 187985 | 0.0 | 24.682453 | 7 |
GTCACGA | 183325 | 0.0 | 24.663454 | 29 |
GGAAGAG | 189700 | 0.0 | 24.527494 | 5 |
AGTCACG | 185075 | 0.0 | 24.508856 | 28 |