Date Added to Catalog	PUBMEDID	First Author	Date	Journal	Link	Study	Disease/Trait	Initial Sample Size	Replication Sample Size	Region	Chr_id	Chr_pos	Reported Gene(s)	Mapped_gene	Upstream_gene_id	Downstream_gene_id	Snp_gene_ids	Upstream_gene_distance	Downstream_gene_distance	Strongest SNP-Risk Allele	SNPs	Merged	Snp_id_current	Context	Intergenic	Risk Allele Frequency	p-Value	Pvalue_mlog	p-Value (text)	OR or beta	95% CI (text)	Platform [SNPs passing QC]	CNV
04/16/2014	24123702	Chung CM	03/03/2014	Diabetes Metab Res Rev	http://www.ncbi.nlm.nih.gov/pubmed/24123702	Common quantitative trait locus downstream of RETN gene identified by genome-wide association study is associated with risk of type 2 diabetes mellitus in Han Chinese: a Mendelian randomization effect.	Resistin levels 	382 Han Chinese ancestry indiviudals	559 Han Chinese ancestry indiviudals	19p13.2	19	7674291	RETN	RETN - C19orf59	56729	199675		        3.84	        2.77	rs1423096-G	rs1423096	0	1423096	Intergenic	1	0.78	1E-7	7		    .32	[0.25-0.40] ug/mL increase	Illumina [NR]	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	6p21.32	6	32658824	HLA-DQB1	TRNAI25			100189401			rs9273373-G	rs9273373	0	9273373		0	0.54	4E-14	13.39794000867204		   1.24	[1.17-1.30] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	4p14	4	38798089	TLR1	TLR1			7096			rs4833095-T	rs4833095	0	4833095	missense	0	0.74	5E-12	11.30102999566398		   1.20	[1.14-1.26] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q22.1	5	111131801	WDR36 	WDR36 - RPS3AP21	134430	402287		        1.30	       60.38	rs1438673-C	rs1438673	0	1438673	Intergenic	1	0.49	3E-11	10.52287874528034		   1.16	[1.11-1.21] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	2q12.1	2	102350089	IL1RL1	IL1RL1			9173			rs10197862-A	rs10197862	0	10197862	intron	0	0.85	4E-11	10.39794000867204		   1.24	[1.16-1.32] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	17q21.1	17	39966427	GSDMA 	GSDMA			284110			rs7212938-G	rs7212938	0	7212938	missense	0	0.46	4E-10	9.397940008672037		   1.16	[1.11-1.20] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q22.1	5	111066174	TSLP	SLC25A46 - TSLP	91137	85480		      301.02	        3.91	rs1837253-C	rs1837253	0	1837253	Intergenic	1	0.71	1E-9	8.999999999999998		   1.17	[1.12-1.24] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	9p24.1	9	6175855	IL33 	RANBP6 - GTF3AP1	26953	100135064		      160.22	       20.19	rs72699186-T	rs72699186	0	72699186	Intergenic	1	0.15	2E-9	8.698970004336019		   1.26	[1.16-1.35] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	15q22.33	15	67175947	SMAD3 	SMAD3			4088			rs17294280-G	rs17294280	0	17294280	intron	0	0.23	4E-9	8.397940008672036		   1.18	[1.11-1.25] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	8q21.13	8	80379644	ZBTB10	RPS5P5 - ZBTB10	340443	65986		       78.11	      105.98	rs7009110-T	rs7009110	0	7009110	Intergenic	1	0.36	4E-9	8.397940008672036		   1.14	[1.09-1.19] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	16p13.13	16	11134855	CLEC16A	CLEC16A			23274			rs62026376-C	rs62026376	0	62026376	intron	0	0.72	1E-8	8		   1.17	[1.11-1.24] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q22.1	5	110818610	SLC25A46	SLC25A46 - TSLP	91137	85480		       53.45	      251.47	rs3853750-C	rs3853750	0	3853750	Intergenic	1	NR	2E-7	6.698970004336019		   1.15	[1.1-1.21] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	12p11.22	12	28042192	PTHLH	PTHLH - CCDC91	5744	55297		       70.21	      148.24	rs11049300-G	rs11049300	0	11049300	Intergenic	1	NR	3E-7	6.522878745280337		   1.41	[1.28-1.55] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	17q12	17	39816455	IKZF3	IKZF3			22806			rs12450323-T	rs12450323	0	12450323	intron	0	NR	4E-7	6.397940008672037		   1.16	[1.1-1.22] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	8p23.1	8	10955964	XKR6	XKR6			286046			rs6982751-G	rs6982751	0	6982751	intron	0	NR	4E-7	6.397940008672037		   1.19	[1.12-1.25] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	10p15.1	10	6082658	IL2RA, RBM17	RPL32P23 - RBM17	644020	84991		       10.74	        6.33	rs41295115-C	rs41295115	0	41295115	Intergenic	1	NR	5E-7	6.30102999566398		   1.28	[1.18-1.37] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	5q14.3	5	84611411	EDIL3	EDIL3 - RBBP4P6	10085	100820741		      226.54	      579.22	rs72766477-A	rs72766477	0	72766477	Intergenic	1	NR	5E-7	6.30102999566398		   1.34	[1.23-1.45] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	2q35	2	217812863	TNS1	TNS1			7145			rs76043829-A	rs76043829	0	76043829	intron	0	NR	6E-7	6.221848749616355		   1.21	[1.14-1.29] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	1p13.3	1	107779913	VAV3	VAV3			10451			rs7521681-A	rs7521681	0	7521681	intron	0	NR	7E-7	6.154901959985743		   1.15	[1.09-1.2] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	21q22.13	21	36635645	SIM2	PSMD4P1 - SIM2	54035	6493		      148.21	       64.05	rs6517368-C	rs6517368	0	6517368	Intergenic	1	NR	2E-6	5.698970004336018		   1.12	[1.07-1.17] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	12q14.1	12	61856639	FAM19A2	FAM19A2			338811			rs17605016-G	rs17605016	0	17605016	intron	0	NR	2E-6	5.698970004336018		   1.19	[1.12-1.26] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24388013	Ferreira MA	12/30/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24388013	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	9p24.1	9	6068077	RANBP6	RANBP6 - GTF3AP1	26953	100135064		       52.44	      127.96	rs343496-T	rs343496	0	343496	Intergenic	1	NR	2E-6	5.698970004336018		   1.14	[1.08-1.19] 	Illumina [up to 4,972,397] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1p31.3	1	62583880	DOCK7	DOCK7			85440			rs11207995-C	rs11207995	0	11207995	intron	0	0.22	6E-10	9.221848749616356	(TC)	    .01	[0.00024-0.02376] mmol/L decrease	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	5q13.3	5	75340659	HMGCR	HMGCR			3156			rs10045497-C	rs10045497	0	10045497	intron	0	0.49	2E-8	7.698970004336018	(TC)	    .02	[0.012-0.032] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	5q13.3	5	75340659	HMGCR	HMGCR			3156			rs10045497-C	rs10045497	0	10045497	intron	0	0.49	1E-12	12	(LDL)	    .10	[0.061-0.139] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	8p21.3	8	19962213	LPL	LPL			4023			rs328-G	rs328	0	328	STOP-GAIN	0	0.09	3E-10	9.522878745280336	(TG)	    .07	[0.026-0.116] mmol/L decrease	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	8p21.3	8	19962213	LPL	LPL			4023			rs328-G	rs328	0	328	STOP-GAIN	0	0.09	2E-14	13.69897000433602	(HDL)	    .04	[0.020-0.060] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	9	133273983	ABO	ABO			28			rs507666-A	rs507666	0	507666	intron	0	0.23	4E-11	10.39794000867204	(TC)	    .02	[0.0091-0.0209] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	9	133273983	ABO	ABO			28			rs507666-A	rs507666	0	507666	intron	0	0.23	2E-11	10.69897000433602	(LDL)	    .07	[0.044-0.102] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	11q23.3	11	116791863	APOA1, APOC3, APOA4, APOA5	APOA5			116519			rs651821-C	rs651821	0	651821	UTR-5	0	0.28	2E-59	58.69897000433601	(TG)	    .17	[0.14-0.20] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	15q21.3	15	58388755	LIPC	LOC102724766			102724766			rs2043085-T	rs2043085	0	2043085	intron	0	0.47	2E-8	7.698970004336018	(HDL)	    .01	[0.00024-0.02376] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	19q13.32	19	44900155	TOMM40	TOMM40			10452			rs1160985-T	rs1160985	0	1160985	intron	0	0.37	4E-13	12.39794000867204	(LDL)	    .13	[0.084-0.170] mmol/L decrease	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-T	rs3764261	0	3764261	Intergenic	1	0.16	2E-25	24.69897000433602	(HDL)	    .06	[0.046-0.078] mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.44	3E-7	6.522878745280337	(TG)	    .07	 mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1q41	1	214456273	PTPN14	PTPN14			5784			rs12757404-A	rs12757404	0	12757404	intron	0	0.45	2E-6	5.698970004336018	(TG)	    .01	 mmol/L decrease	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1q43	1	237688783	RYR2	RYR2			6262			rs876793-C	rs876793	0	876793	intron	0	0.2	3E-7	6.522878745280337	(TG)	    .01	 mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1p31.3	1	62454337	DOCK7	DOCK7			85440			rs636523-G	rs636523	0	636523	nearGene-3	0	0.2	5E-7	6.30102999566398	(LDL)	    .02	 mmol/L decrease	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	19p13.2	19	11145500	SPC24	MIR6886 - SPC24	102465534	147841		       31.97	        1.27	rs4804146-C	rs4804146	0	4804146	Intergenic	1	0.26	7E-6	5.154901959985742	(LDL)	    .05	 mmol/L decrease	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	8q24.13	8	125474167	TRIB1	TRIB1 - LINC00861	10221	100130231		       35.76	      448.36	rs17321515-A	rs17321515	0	17321515	Intergenic	1	0.47	8E-7	6.096910013008056	(LDL)	    .07	 mmol/L increase	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24386095	Zhou L	12/30/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24386095	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1p31.3	1	62447248	USP1	USP1			7398			rs10158897-T	rs10158897	0	10158897	intron	0	0.2	9E-6	5.045757490560675	(LDL)	    .02	 mmol/L decrease	Illumina and Affymetrix [up to 2,249,917] (imputed)	N
08/02/2014	24375517	Lohmann K	12/26/2013	Mov Disord	http://www.ncbi.nlm.nih.gov/pubmed/24375517	Genome-wide association study in musician's dystonia: a risk variant at the arylsulfatase G locus?	Musician's dystonia	127 European ancestry cases, 984 European ancestry controls	116 European ancestry cases, 125 European ancestry controls	3p21.1	3	54344573	NR	CACNA2D3			55799			rs11711956-?	rs11711956	0	11711956	intron	0	0.24	2E-6	5.698970004336018		   1.73	[1.38-2.18] 	Affymetrix [557,620]	N
08/02/2014	24375517	Lohmann K	12/26/2013	Mov Disord	http://www.ncbi.nlm.nih.gov/pubmed/24375517	Genome-wide association study in musician's dystonia: a risk variant at the arylsulfatase G locus?	Musician's dystonia	127 European ancestry cases, 984 European ancestry controls	116 European ancestry cases, 125 European ancestry controls	8p21.2	8	27064595	NR	MIR548H4 - STMN4	100313884	81551		       15.63	      170.73	rs17060993-?	rs17060993	0	17060993	Intergenic	1	0.03	2E-6	5.698970004336018		   2.70	[1.80-4.06] 	Affymetrix [557,620]	N
08/02/2014	24375517	Lohmann K	12/26/2013	Mov Disord	http://www.ncbi.nlm.nih.gov/pubmed/24375517	Genome-wide association study in musician's dystonia: a risk variant at the arylsulfatase G locus?	Musician's dystonia	127 European ancestry cases, 984 European ancestry controls	116 European ancestry cases, 125 European ancestry controls	17q24.2	17	68386068	ARSG	ARSG			22901			rs11655081-?	rs11655081	0	11655081	intron	0	0.02	4E-9	8.397940008672036		   4.33	[2.66-7.05] 	Affymetrix [557,620]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	19q13.32	19	44906745	APOE	APOE			348			rs769449-?	rs769449	0	769449	intron	0	0.116	5E-19	18.30102999566398	(EA)	    .03	[0.02457-0.03835] unit decrease	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	19q13.32	19	44899959	TOMM40	TOMM40			10452			rs115881343-?	rs115881343	0	115881343	intron	0	0.026	4E-9	8.397940008672036	(EA)	    .04	[.02931-.0585] unit decrease	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	5q21.1	5	102391066	SLCO6A1	SLCO6A1			133482			rs10073892-?	rs10073892	0	10073892	intron	0	NR	7E-7	6.154901959985743	(EA)	    .01	[0.007616-0.01751] unit increase	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	21q22.11	21	33362204	Intergenic	USF1P1 - IFNGR2	100151645	3460		       27.10	       40.69	rs9980664-?	rs9980664	0	9980664	Intergenic	1	NR	3E-6	5.522878745280337	(EA)	    .03	[0.01569-0.03866] unit increase	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	11q14.1	11	80251105	Intergenic	MIR5579 - ARL6IP1P3	100847000	729790		      828.88	      402.32	rs11231991-?	rs11231991	0	11231991	Intergenic	1	NR	4E-6	5.397940008672037	(EA)	    .02	[0.01147-0.02826] unit decrease	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	7p15.3	7	21821494	DNAH11	DNAH11			8701			rs2390593-?	rs2390593	0	2390593	intron	0	NR	4E-6	5.397940008672037	(EA)	    .01	[0.008135-0.02006] unit increase	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	4q31.1	4	138888027	Intergenic	LINC00499 - CCRN4L	100874047	25819		      463.68	      127.73	rs77803164-?	rs77803164	0	77803164	Intergenic	1	NR	4E-6	5.397940008672037	(EA)	    .02	[0.01279-0.03167] unit decrease	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	2q34	2	212744528	Intergenic	MIR548F2 - PCED1CP	100313771	646249		      318.17	       87.63	rs10497985-?	rs10497985	0	10497985	Intergenic	1	NR	4E-6	5.397940008672037	(EA)	    .02	[.009684-0.02406] unit increase	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	7q33	7	137844832	DGKI	DGKI			9162			rs6978230-?	rs6978230	0	6978230	intron	0	NR	6E-6	5.221848749616356	(EA)	    .02	[0.01369-0.03423] unit decrease	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	2q36.1	2	223158578	Intergenic	KCNE4 - TRNAK39P	23704	100189504		      102.94	      163.02	rs895767-?	rs895767	0	895767	Intergenic	1	NR	7E-6	5.154901959985742	(EA)	    .01	[0.00572-0.01457] unit decrease	Illumina [1,530,316]	N
08/02/2014	24468470	Zhang C	12/26/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/24468470	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	5q23.2	5	123856740	Intergenic	KRT18P16 - HMGB1P29	391827	100873892		      219.27	      363.84	rs1021769-?	rs1021769	0	1021769	Intergenic	1	NR	7E-6	5.154901959985742	(EA)	    .02	[0.00853-0.02172] unit decrease	Illumina [1,530,316]	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q13	2	110850255	ACOXL	ACOXL			55289			rs6732565-A	rs6732565	0	6732565	intron	0	0.62	9E-9	8.045757490560675	(EA)	   1.10	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q13	2	110850255	ACOXL	ACOXL			55289			rs6732565-A	rs6732565	0	6732565	intron	0	0.61	3E-8	7.522878745280337		   1.07	[1.05-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q11.2	2	100208905	AFF3	LINC01104			150577			rs9653442-C	rs9653442	0	9653442	intron	0	0.46	2E-18	17.69897000433602		   1.11	[1.09-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q11.2	2	100208905	AFF3	LINC01104			150577			rs9653442-C	rs9653442	0	9653442	intron	0	0.46	1E-14	14	(EA)	   1.12	[1.09-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	19p13.11	19	17323284	ANKRD55	ANO8;DDA1			57719;79016			rs77331626-G	rs77331626	0	77331626	UTR-3;UTR-3	0	0.63	8E-23	22.09691001300806	(EA)	   1.21	[1.17-1.26] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	10	62020112	ARID5B	ARID5B			84159			rs71508903-T	rs71508903	0	71508903	intron	0	0.22	5E-22	21.30102999566398		   1.16	[1.13-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	10	62020112	ARID5B	ARID5B			84159			rs71508903-T	rs71508903	0	71508903	intron	0	0.21	3E-15	14.52287874528034	(EA)	   1.15	[1.11-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	10	62020112	ARID5B	ARID5B			84159			rs71508903-T	rs71508903	0	71508903	intron	0	0.24	1E-8	8	(East Asian)	   1.18	[1.12-1.25] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q21	6	106219660	ATG5	ATG5			9474			rs9372120-G	rs9372120	0	9372120	intron	0	0.16	8E-10	9.096910013008054		   1.11	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q21	6	106219660	ATG5	ATG5			9474			rs9372120-G	rs9372120	0	9372120	intron	0	0.2	4E-8	7.397940008672037	(EA)	   1.10	[1.06-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			ATM	 - 						chr11:107967350-A	chr11:107967350					0.92	1E-8		(EA)	   1.21	[1.13-1.29] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8p23.1	8	11484371	BLK	FAM167A - BLK	83648	640		       17.60	        9.64	rs2736337-C	rs2736337	0	2736337	Intergenic	1	0.36	3E-13	12.52287874528034		   1.11	[1.08-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8p23.1	8	11484371	BLK	FAM167A - BLK	83648	640		       17.60	        9.64	rs2736337-C	rs2736337	0	2736337	Intergenic	1	0.25	8E-8	7.096910013008055	(EA)	   1.09	[1.06-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8p23.1	8	11484371	BLK	FAM167A - BLK	83648	640		       17.60	        9.64	rs2736337-C	rs2736337	0	2736337	Intergenic	1	0.67	2E-7	6.698970004336019	(East Asian)	   1.15	[1.09-1.22] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	17p13.2	17	5369285	C1QBP	RABEP1			9135			rs72634030-A	rs72634030	0	72634030	intron	0	0.23	2E-9	8.698970004336019		   1.12	[1.08-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p15.2	4	26118379	C4orf52	SMIM20 - RBPJ	389203	3516		      188.50	       45.12	rs11933540-C	rs11933540	0	11933540	Intergenic	1	0.31	1E-16	16	(EA)	   1.15	[1.11-1.19] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q21.1	5	103273223	C5orf30	C5orf30			90355			rs2561477-G	rs2561477	0	2561477	intron	0	0.68	2E-11	10.69897000433602	(EA)	   1.11	[1.08-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q21.1	5	103273223	C5orf30	C5orf30			90355			rs2561477-G	rs2561477	0	2561477	intron	0	0.69	1E-10	10		   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9p13.3	9	34710341	CCL19, CCL21	CCL21;LOC101929761			6366;101929761			rs11574914-A	rs11574914	0	11574914	nearGene-5;intron	0	0.33	2E-15	14.69897000433602	(EA)	   1.13	[1.09-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9p13.3	9	34710341	CCL19, CCL21	CCL21;LOC101929761			6366;101929761			rs11574914-A	rs11574914	0	11574914	nearGene-5;intron	0	0.26	3E-15	14.52287874528034		   1.12	[1.09-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q27	6	167127354	CCR6	CCR6			1235			rs1571878-C	rs1571878	0	1571878	intron	0	0.45	5E-35	34.30102999566398		   1.17	[1.14-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q27	6	167127354	CCR6	CCR6			1235			rs1571878-C	rs1571878	0	1571878	intron	0	0.48	1E-22	22	(East Asian)	   1.28	[1.22-1.35] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q27	6	167127354	CCR6	CCR6			1235			rs1571878-C	rs1571878	0	1571878	intron	0	0.44	2E-18	17.69897000433602	(EA)	   1.13	[1.10-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p13.1	1	116721168	CD2	GAPDHP64 - NEFHP1	391069	339396		        6.26	       18.82	rs624988-T	rs624988	0	624988	Intergenic	1	0.4	8E-10	9.096910013008054	(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18q22.2	18	69876810	CD226	CD226			10666			rs2469434-C	rs2469434	0	2469434	intron	0	0.4	9E-10	9.045757490560675		   1.07	[1.05-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18q22.2	18	69876810	CD226	CD226			10666			rs2469434-C	rs2469434	0	2469434	intron	0	0.37	1E-8	8	(East Asian)	   1.11	[1.07-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	2	203745673	CD28	CD28 - KRT18P39	940	344462		        6.76	       18.56	rs1980422-C	rs1980422	0	1980422	Intergenic	1	0.19	3E-14	13.52287874528034		   1.12	[1.09-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	2	203745673	CD28	CD28 - KRT18P39	940	344462		        6.76	       18.56	rs1980422-C	rs1980422	0	1980422	Intergenic	1	0.24	2E-13	12.69897000433602	(EA)	   1.13	[1.09-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	20q13.12	20	46120612	CD40	CD40			958			rs4239702-C	rs4239702	0	4239702	intron	0	0.69	4E-18	17.39794000867204		   1.13	[1.10-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	20q13.12	20	46120612	CD40	CD40			958			rs4239702-C	rs4239702	0	4239702	intron	0	0.72	1E-16	16	(EA)	   1.14	[1.11-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q12.2	11	61138978	CD5	VPS37C			55048			rs508970-A	rs508970	0	508970	intron	0	0.49	3E-6	5.522878745280337	(EA)	   1.07	[1.04-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			CD83	 - 						chr6:14103212-T	chr6:14103212					0.09	3E-7			   1.13	[1.08-1.19] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			CD83	 - 						chr6:14103212-T	chr6:14103212					0.15	3E-6		(East Asian)	   1.16	[1.09-1.24] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q13.2	12	56001170	CDK2	SUOX			6821			rs773125-A	rs773125	0	773125	intron	0	0.65	1E-10	10		   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q13.2	12	56001170	CDK2	SUOX			6821			rs773125-A	rs773125	0	773125	intron	0	0.6	2E-8	7.698970004336018	(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q14.1	12	57714269	CDK4	OS9			10956			rs1633360-T	rs1633360	0	1633360	intron	0	0.58	7E-8	7.154901959985742	(EA)	   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q14.1	12	57714269	CDK4	OS9			10956			rs1633360-T	rs1633360	0	1633360	intron	0	0.49	1E-7	7		   1.07	[1.04-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7q21.2	7	92607515	CDK6	CDK6			1021			rs4272-G	rs4272	0	4272	UTR-3	0	0.19	5E-9	8.301029995663981		   1.10	[1.06-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7q21.2	7	92607515	CDK6	CDK6			1021			rs4272-G	rs4272	0	4272	UTR-3	0	0.21	1E-8	8	(EA)	   1.10	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q21	11	95578258	CEP57	SESN3 - FGFR3P2	143686	100462815		      345.72	      178.70	rs4409785-C	rs4409785	0	4409785	Intergenic	1	0.15	1E-11	11		   1.12	[1.09-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q21	11	95578258	CEP57	SESN3 - FGFR3P2	143686	100462815		      345.72	      178.70	rs4409785-C	rs4409785	0	4409785	Intergenic	1	0.17	4E-9	8.397940008672036	(EA)	   1.12	[1.08-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.1	2	201289674	CFLAR, CASP8	ALS2CR12			130540			rs6715284-G	rs6715284	0	6715284	intron	0	0.1	3E-9	8.522878745280337	(EA)	   1.15	[1.10-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p16.1	4	10725733	CLNK	CLNK - RNPS1P1	116449	643446		       40.97	      643.09	rs13142500-C	rs13142500	0	13142500	Intergenic	1	0.45	2E-6	5.698970004336018	(EA)	   1.10	[1.06-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	13q14.11	13	39793932	COG6	RNY4P14 - CDKN2AIPNLP3	100379584	100874397		        8.42	       23.82	rs9603616-C	rs9603616	0	9603616	Intergenic	1	0.68	2E-12	11.69897000433602		   1.10	[1.07-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	13q14.11	13	39793932	COG6	RNY4P14 - CDKN2AIPNLP3	100379584	100874397		        8.42	       23.82	rs9603616-C	rs9603616	0	9603616	Intergenic	1	0.66	3E-11	10.52287874528034	(EA)	   1.11	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	2	203874196	CTLA4	CTLA4			1493			rs3087243-G	rs3087243	0	3087243	nearGene-3	0	0.6	3E-25	24.52287874528033		   1.14	[1.11-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	2	203874196	CTLA4	CTLA4			1493			rs3087243-G	rs3087243	0	3087243	nearGene-3	0	0.55	4E-22	21.39794000867203	(EA)	   1.15	[1.12-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q23.3	11	118858682	CXCR5	SETP16 - CXCR5	649925	643		       24.12	       25.08	rs10790268-G	rs10790268	0	10790268	Intergenic	1	0.79	1E-17	17	(EA)	   1.17	[1.13-1.22] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q23.3	11	118858682	CXCR5	SETP16 - CXCR5	649925	643		       24.12	       25.08	rs10790268-G	rs10790268	0	10790268	Intergenic	1	0.81	1E-15	15		   1.14	[1.11-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p14.3	3	58317208	DNASE1L3, ABHD6, PXK	RPP14			11102			rs73081554-T	rs73081554	0	73081554	intron	0	0.07	5E-8	7.30102999566398	(EA)	   1.18	[1.11-1.25] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.1	3	27723132	EOMES	EOMES			8320			rs3806624-G	rs3806624	0	3806624	nearGene-5	0	0.56	9E-9	8.045757490560675		   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.1	3	27723132	EOMES	EOMES			8320			rs3806624-G	rs3806624	0	3806624	nearGene-5	0	0.46	3E-8	7.522878745280337	(EA)	   1.08	[1.05-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q24.3	11	128627057	ETS1	MIR6090 - FLI1	102466104	2313		      104.61	       59.48	rs73013527-C	rs73013527	0	73013527	Intergenic	1	0.56	1E-10	10		   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q24.3	11	128627057	ETS1	MIR6090 - FLI1	102466104	2313		      104.61	       59.48	rs73013527-C	rs73013527	0	73013527	Intergenic	1	0.5	1E-6	5.999999999999999	(EA)	   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q24.3	11	128627057	ETS1	MIR6090 - FLI1	102466104	2313		      104.61	       59.48	rs73013527-C	rs73013527	0	73013527	Intergenic	1	0.72	4E-6	5.397940008672037	(East Asian)	   1.14	[1.08-1.21] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q12.2	11	61828092	FADS1, FADS2, FADS3	FADS2			9415			rs968567-C	rs968567	0	968567	intron	0	0.83	2E-8	7.698970004336018	(EA)	   1.12	[1.07-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q23.3	1	161435263	FCGR2A	TRNAN32 - TRNAG7	100189402	100188997		        7.11	        4.91	rs72717009-T	rs72717009	0	72717009	Intergenic	1	0.12	5E-7	6.30102999566398	(EA)	   1.12	[1.07-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q23.1	1	157705207	FCRL3	FCRL3 - SONP1	115352	148300		        4.22	        3.79	rs2317230-T	rs2317230	0	2317230	Intergenic	1	0.42	2E-7	6.698970004336019		   1.07	[1.04-1.09] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	10	8062759	GATA3	GATA3			2625			rs3824660-C	rs3824660	0	3824660	intron	0	0.39	3E-9	8.522878745280337	(EA)	   1.10	[1.06-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	10	8062759	GATA3	GATA3			2625			rs3824660-C	rs3824660	0	3824660	intron	0	0.38	2E-8	7.698970004336018		   1.08	[1.05-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q22.3	8	101451374	GRHL2	NACAP1 - GRHL2	83955	79977		       81.78	       41.07	rs678347-G	rs678347	0	678347	Intergenic	1	0.27	7E-9	8.154901959985743	(EA)	   1.10	[1.06-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q22.3	8	101451374	GRHL2	NACAP1 - GRHL2	83955	79977		       81.78	       41.07	rs678347-G	rs678347	0	678347	Intergenic	1	0.42	2E-8	7.698970004336018		   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	6	32460995	HLA-DRB1	TRNAI25			100189401			rs9268839-G	rs9268839	0	9268839		0	0.45	1E-250	250	(EA)	   2.47	[2.39-2.55] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	6	32460995	HLA-DRB1	TRNAI25			100189401			rs9268839-G	rs9268839	0	9268839		0	0.44	2E-145	144.698970004336	(East Asian)	   1.90	[1.81-1.99] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.11	21	33391982	IFNGR2	USF1P1 - IFNGR2	100151645	3460		       56.88	       10.91	rs73194058-C	rs73194058	0	73194058	Intergenic	1	0.87	3E-8	7.522878745280337	(EA)	   1.13	[1.08-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.11	21	33391982	IFNGR2	USF1P1 - IFNGR2	100151645	3460		       56.88	       10.91	rs73194058-C	rs73194058	0	73194058	Intergenic	1	0.76	1E-6	5.999999999999999		   1.08	[1.05-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			IKZF3, CSF3	 - 						chr17:38031857-G	chr17:38031857					0.4	2E-12			   1.09	[1.07-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			IKZF3, CSF3	 - 						chr17:38031857-G	chr17:38031857					0.46	6E-10		(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4q27	4	122478336	IL2, IL21	IL2 - IL21	3558	59067		       21.84	      134.29	rs45475795-G	rs45475795	0	45475795	Intergenic	1	0.07	4E-6	5.397940008672037	(EA)	   1.14	[1.08-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3q22.3	3	136683218	IL20RB	STAG1			10274			rs9826828-A	rs9826828	0	9826828	intron	0	0.02	9E-10	9.045757490560675	(EA)	   1.44	[1.28-1.61] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	10	6056986	IL2RA	IL2RA			3559			rs706778-T	rs706778	0	706778	intron	0	0.4	5E-15	14.30102999566398	(EA)	   1.12	[1.09-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	10	6056986	IL2RA	IL2RA			3559			rs706778-T	rs706778	0	706778	intron	0	0.45	5E-14	13.30102999566398		   1.10	[1.07-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q12.3	22	37149465	IL2RB	IL2RB			3560			rs3218251-A	rs3218251	0	3218251	intron	0	0.27	6E-6	5.221848749616356	(EA)	   1.08	[1.04-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q31.1	5	132094425	IL3, CSF2	CSF2 - P4HA2-AS1	1437	100861518		       18.26	       90.45	rs657075-A	rs657075	0	657075	Intergenic	1	0.35	6E-6	5.221848749616356	(East Asian)	   1.12	[1.07-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q21.3	1	154454494	IL6R	IL6R			3570			rs2228145-A	rs2228145	0	2228145	missense	0	0.6	4E-9	8.397940008672036		   1.08	[1.05-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q21.3	1	154454494	IL6R	IL6R			3570			rs2228145-A	rs2228145	0	2228145	missense	0	0.6	5E-6	5.301029995663981	(EA)	   1.07	[1.04-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	Xq28	23	154036016	IRAK1	MECP2			4204			rs5987194-C	rs5987194	0	5987194	intron	0	0.36	5E-16	15.30102999566398		   1.16	[1.12-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	Xq28	23	154036016	IRAK1	MECP2			4204			rs5987194-C	rs5987194	0	5987194	intron	0	0.13	3E-12	11.52287874528034	(EA)	   1.16	[1.12-1.21] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p25.3	6	426155	IRF4	IRF4 - EXOC2	3662	55770		       14.71	       58.98	rs9378815-C	rs9378815	0	9378815	Intergenic	1	0.58	2E-10	9.698970004336017		   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p25.3	6	426155	IRF4	IRF4 - EXOC2	3662	55770		       14.71	       58.98	rs9378815-C	rs9378815	0	9378815	Intergenic	1	0.66	1E-7	7	(EA)	   1.09	[1.05-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			IRF5	 - 						chr7:128580042-G	chr7:128580042					0.39	1E-14			   1.12	[1.09-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			IRF5	 - 						chr7:128580042-G	chr7:128580042					0.46	4E-12		(EA)	   1.12	[1.08-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16q24.1	16	85985481	IRF8	MIR6774 - LINC01082	102466732	100506542		       67.07	      210.70	rs13330176-A	rs13330176	0	13330176	Intergenic	1	0.23	9E-9	8.045757490560675	(EA)	   1.12	[1.08-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7p15.1	7	28135367	JAZF1	JAZF1			221895			rs67250450-T	rs67250450	0	67250450	intron	0	0.79	3E-9	8.522878745280337	(EA)	   1.11	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	7p15.1	7	28135367	JAZF1	JAZF1			221895			rs67250450-T	rs67250450	0	67250450	intron	0	0.58	4E-9	8.397940008672036		   1.10	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p23.1	2	30226728	LBH	YPEL5 - LBH	51646	81606		       66.20	        4.80	rs10175798-A	rs10175798	0	10175798	Intergenic	1	0.54	1E-9	8.999999999999998		   1.08	[1.06-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p23.1	2	30226728	LBH	YPEL5 - LBH	51646	81606		       66.20	        4.80	rs10175798-A	rs10175798	0	10175798	Intergenic	1	0.62	4E-8	7.397940008672037	(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q25.1	1	173380586	LOC100506023	LOC100506023			100506023			rs2105325-C	rs2105325	0	2105325	intron	0	0.79	7E-13	12.15490195998574		   1.12	[1.08-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q25.1	1	173380586	LOC100506023	LOC100506023			100506023			rs2105325-C	rs2105325	0	2105325	intron	0	0.74	3E-11	10.52287874528034	(EA)	   1.12	[1.08-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q23	15	69699078	LOC145837	RPLP1 - GEMIN8P1	6176	100128431		      243.53	      104.04	rs8026898-A	rs8026898	0	8026898	Intergenic	1	0.21	4E-19	18.39794000867203		   1.15	[1.11-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q23	15	69699078	LOC145837	RPLP1 - GEMIN8P1	6176	100128431		      243.53	      104.04	rs8026898-A	rs8026898	0	8026898	Intergenic	1	0.27	6E-18	17.22184874961635	(EA)	   1.15	[1.11-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	1	38168207	LOC339442	MIR3659 - TUBB6P1	100500801	100418964		       78.88	      215.64	rs12140275-A	rs12140275	0	12140275	Intergenic	1	0.75	4E-9	8.397940008672036	(EA)	   1.11	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	17q12	17	39583908	MED1	CDK12 - NEUROD2	51755	4761		       16.35	       19.86	rs1877030-C	rs1877030	0	1877030	Intergenic	1	0.83	2E-8	7.698970004336018		   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	1	37812907	MTF1, INPP5B	MTF1			4520			rs28411352-T	rs28411352	0	28411352	UTR-3	0	0.25	3E-12	11.52287874528034		   1.11	[1.08-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	1	37812907	MTF1, INPP5B	MTF1			4520			rs28411352-T	rs28411352	0	28411352	UTR-3	0	0.25	6E-9	8.221848749616356	(EA)	   1.10	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.1	6	44266184	NFKBIE	NFKBIE			4794			rs2233424-T	rs2233424	0	2233424	nearGene-5	0	0.21	2E-13	12.69897000433602	(East Asian)	   1.24	[1.17-1.31] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.1	6	44266184	NFKBIE	NFKBIE			4794			rs2233424-T	rs2233424	0	2233424	nearGene-5	0	0.04	3E-8	7.522878745280337	(EA)	   1.33	[1.20-1.47] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			P2RY10	 - 						chrX:78464616-A	chrX:78464616					0.44	4E-8		(East Asian)	   1.11	[1.07-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.13	1	17346235	PADI4	PADI4			23569			rs2301888-G	rs2301888	0	2301888	intron	0	0.41	8E-13	12.09691001300806	(East Asian)	   1.19	[1.14-1.25] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.13	1	17346235	PADI4	PADI4			23569			rs2301888-G	rs2301888	0	2301888	intron	0	0.65	6E-9	8.221848749616356	(EA)	   1.11	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.3	3	17005540	PLCL2	PLCL2			23228			rs4452313-T	rs4452313	0	4452313	intron	0	0.29	5E-11	10.30102999566398	(EA)	   1.11	[1.08-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.3	3	17005540	PLCL2	PLCL2			23228			rs4452313-T	rs4452313	0	4452313	intron	0	0.35	2E-10	9.698970004336017		   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q32.33	14	104926500	PLD4, AHNAK2	PLD4			122618			rs2582532-C	rs2582532	0	2582532	intron	0	0.73	5E-8	7.30102999566398	(East Asian)	   1.18	[1.11-1.25] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.1	6	149513438	PPIL4	PPIL4			85313			rs9373594-T	rs9373594	0	9373594	intron	0	0.63	3E-9	8.522878745280337		   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.1	6	149513438	PPIL4	PPIL4			85313			rs9373594-T	rs9373594	0	9373594	intron	0	0.33	5E-8	7.30102999566398	(East Asian)	   1.11	[1.07-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q23.1	14	61473957	PRKCH	PRKCH			5583			rs3783782-A	rs3783782	0	3783782	intron	0	0.09	2E-9	8.698970004336019		   1.14	[1.09-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q23.1	14	61473957	PRKCH	PRKCH			5583			rs3783782-A	rs3783782	0	3783782	intron	0	0.22	4E-9	8.397940008672036	(East Asian)	   1.14	[1.09-1.19] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	10	6348488	PRKCQ	DKFZp667F0711			399716			rs947474-A	rs947474	0	947474	nearGene-5	0	0.81	3E-10	9.522878745280336	(EA)	   1.12	[1.08-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	10	6348488	PRKCQ	DKFZp667F0711			399716			rs947474-A	rs947474	0	947474	nearGene-5	0	0.83	4E-10	9.397940008672037		   1.11	[1.07-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18p11.21	18	12881362	PTPN2	PTPN2			5771			rs8083786-G	rs8083786	0	8083786	intron	0	0.21	6E-18	17.22184874961635		   1.14	[1.11-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18p11.21	18	12881362	PTPN2	PTPN2			5771			rs8083786-G	rs8083786	0	8083786	intron	0	0.34	2E-11	10.69897000433602	(East Asian)	   1.18	[1.13-1.24] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18p11.21	18	12881362	PTPN2	PTPN2			5771			rs8083786-G	rs8083786	0	8083786	intron	0	0.16	8E-9	8.096910013008056	(EA)	   1.12	[1.08-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-A	rs2476601	0	2476601	missense;intron	0	0.09	9E-170	169.0457574905606	(EA)	   1.80	[1.73-1.88] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q24.21	8	128529854	PVT1	LINC01263 - LINC00977	101927774	728724		      101.94	      686.61	rs1516971-T	rs1516971	0	1516971	Intergenic	1	0.87	3E-11	10.52287874528034	(EA)	   1.16	[1.11-1.21] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q24.1	14	68293424	RAD51B	RAD51B			5890			rs1950897-T	rs1950897	0	1950897	intron	0	0.76	8E-11	10.09691001300805		   1.10	[1.07-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q24.1	14	68293424	RAD51B	RAD51B			5890			rs1950897-T	rs1950897	0	1950897	intron	0	0.71	5E-8	7.30102999566398	(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q14	15	38541832	RASGRP1	RASGRP1			10125			rs8032939-C	rs8032939	0	8032939	intron	0	0.35	2E-18	17.69897000433602		   1.13	[1.10-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q14	15	38541832	RASGRP1	RASGRP1			10125			rs8032939-C	rs8032939	0	8032939	intron	0	0.25	3E-14	13.52287874528034	(EA)	   1.13	[1.09-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q14	15	38541832	RASGRP1	RASGRP1			10125			rs8032939-C	rs8032939	0	8032939	intron	0	0.6	9E-6	5.045757490560675	(East Asian)	   1.12	[1.06-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			RCAN1	 - 						chr21:35928240-C	chr21:35928240					0.9	3E-7			   1.11	[1.07-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			RCAN1	 - 						chr21:35928240-C	chr21:35928240					0.88	7E-7		(EA)	   1.12	[1.07-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p16.1	2	60897715	REL	REL			5966			rs34695944-C	rs34695944	0	34695944	intron	0	0.36	4E-16	15.39794000867204	(EA)	   1.13	[1.09-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p16.1	2	60897715	REL	REL			5966			rs34695944-C	rs34695944	0	34695944	intron	0	0.27	2E-15	14.69897000433602		   1.12	[1.09-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	10	62277122	RTKN2	RTKN2 - ZNF365	219790	22891		        8.26	       97.04	rs6479800-C	rs6479800	0	6479800	Intergenic	1	0.18	4E-8	7.397940008672037		   1.11	[1.07-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	10	62277122	RTKN2	RTKN2 - ZNF365	219790	22891		        8.26	       97.04	rs6479800-C	rs6479800	0	6479800	Intergenic	1	0.1	4E-6	5.397940008672037	(East Asian)	   1.19	[1.11-1.29] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.12	21	35365944	RUNX1, LOC100506403	RUNX1-IT1 - RPL34P3	80215	54026		      326.52	      106.13	rs8133843-A	rs8133843	0	8133843	Intergenic	1	0.59	3E-9	8.522878745280337		   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.12	21	35365944	RUNX1, LOC100506403	RUNX1-IT1 - RPL34P3	80215	54026		      326.52	      106.13	rs8133843-A	rs8133843	0	8133843	Intergenic	1	0.62	2E-8	7.698970004336018	(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q22.3	10	79947217	SFTPD	SFTPD			6441			rs726288-T	rs726288	0	726288	intron	0	0.18	9E-9	8.045757490560675	(East Asian)	   1.22	[1.14-1.31] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q24.12	12	111395984	SH2B3, PTPN11	HSPA8P14 - SH2B3	642580	10019		       10.30	        9.93	rs10774624-G	rs10774624	0	10774624	Intergenic	1	0.5	7E-9	8.154901959985743	(EA)	   1.09	[1.06-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p14	2	65371166	SPRED2	SPRED2			200734			rs1858037-T	rs1858037	0	1858037	intron	0	0.52	3E-15	14.52287874528034		   1.11	[1.08-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p14	2	65371166	SPRED2	SPRED2			200734			rs1858037-T	rs1858037	0	1858037	intron	0	0.65	2E-9	8.698970004336019	(EA)	   1.09	[1.06-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p14	2	65371166	SPRED2	SPRED2			200734			rs1858037-T	rs1858037	0	1858037	intron	0	0.16	1E-8	8	(East Asian)	   1.19	[1.12-1.26] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q32.3	2	191079016	STAT4	STAT4			6775			rs11889341-T	rs11889341	0	11889341	intron	0	0.25	4E-19	18.39794000867203		   1.13	[1.10-1.17] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q32.3	2	191079016	STAT4	STAT4			6775			rs11889341-T	rs11889341	0	11889341	intron	0	0.23	1E-12	12	(EA)	   1.12	[1.09-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q32.3	2	191079016	STAT4	STAT4			6775			rs11889341-T	rs11889341	0	11889341	intron	0	0.3	2E-8	7.698970004336018	(East Asian)	   1.16	[1.10-1.22] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q13.1	22	39351666	SYNGR1	SYNGR1			9145			rs909685-A	rs909685	0	909685	intron	0	0.45	1E-16	16		   1.13	[1.10-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q13.1	22	39351666	SYNGR1	SYNGR1			9145			rs909685-A	rs909685	0	909685	intron	0	0.3	6E-12	11.22184874961635	(EA)	   1.11	[1.08-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q13.1	22	39351666	SYNGR1	SYNGR1			9145			rs909685-A	rs909685	0	909685	intron	0	0.85	2E-7	6.698970004336019	(East Asian)	   1.23	[1.14-1.33] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.3	6	159085568	TAGAP	TAGAP - FNDC1	117289	84624		       40.42	       83.83	rs2451258-T	rs2451258	0	2451258	Intergenic	1	0.74	3E-11	10.52287874528034		   1.10	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q25.3	6	159085568	TAGAP	TAGAP - FNDC1	117289	84624		       40.42	       83.83	rs2451258-T	rs2451258	0	2451258	Intergenic	1	0.64	2E-10	9.698970004336017	(EA)	   1.10	[1.07-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p11	4	48218822	TEC	TEC			7006			rs2664035-A	rs2664035	0	2664035	intron	0	0.4	3E-8	7.522878745280337	(EA)	   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p11	4	48218822	TEC	TEC			7006			rs2664035-A	rs2664035	0	2664035	intron	0	0.37	1E-7	7		   1.07	[1.04-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q23.3	6	137906227	TNFAIP3	TNFAIP3 - RPSAP42	7128	100270919		       22.91	       89.04	rs7752903-G	rs7752903	0	7752903	Intergenic	1	0.04	2E-29	28.69897000433602		   1.38	[1.31-1.46] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q23.3	6	137906227	TNFAIP3	TNFAIP3 - RPSAP42	7128	100270919		       22.91	       89.04	rs7752903-G	rs7752903	0	7752903	Intergenic	1	0.03	2E-20	19.69897000433602	(EA)	   1.41	[1.31-1.52] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6q23.3	6	137906227	TNFAIP3	TNFAIP3 - RPSAP42	7128	100270919		       22.91	       89.04	rs7752903-G	rs7752903	0	7752903	Intergenic	1	0.07	7E-11	10.15490195998574	(East Asian)	   1.34	[1.23-1.46] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			TNFRSF14, MMEL1	 - 						chr1:2523811-G	chr1:2523811					0.67	8E-14			   1.11	[1.08-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			TNFRSF14, MMEL1	 - 						chr1:2523811-G	chr1:2523811					0.7	5E-9		(EA)	   1.10	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			TNFRSF14, MMEL1	 - 						chr1:2523811-G	chr1:2523811					0.58	8E-7		(East Asian)	   1.16	[1.09-1.23] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.23	1	7901146	TNFRSF9	UTS2 - TNFRSF9	10911	3604		       47.66	       14.73	rs227163-C	rs227163	0	227163	Intergenic	1	0.42	3E-9	8.522878745280337	(East Asian)	   1.11	[1.08-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q21.13	8	80183160	TPD52	TPD52 - MIR5708	7163	100847056		       11.50	       58.23	rs998731-T	rs998731	0	998731	Intergenic	1	0.44	7E-9	8.154901959985743	(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q21.13	8	80183160	TPD52	TPD52 - MIR5708	7163	100847056		       11.50	       58.23	rs998731-T	rs998731	0	998731	Intergenic	1	0.56	2E-8	7.698970004336018		   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9q33.2	9	120873843	TRAF1, C5	PHF19			26147			rs10985070-C	rs10985070	0	10985070	intron	0	0.45	5E-11	10.30102999566398		   1.08	[1.06-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	9q33.2	9	120873843	TRAF1, C5	PHF19			26147			rs10985070-C	rs10985070	0	10985070	intron	0	0.42	4E-9	8.397940008672036	(EA)	   1.09	[1.06-1.12] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11p12	11	36480237	TRAF6, RAG1, RAG2	PRR5L - TRAF6	79899	7189		       15.03	        3.53	rs331463-T	rs331463	0	331463	Intergenic	1	0.85	1E-7	7	(EA)	   1.12	[1.07-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11p12	11	36480237	TRAF6, RAG1, RAG2	PRR5L - TRAF6	79899	7189		       15.03	        3.53	rs331463-T	rs331463	0	331463	Intergenic	1	0.87	3E-7	6.522878745280337		   1.10	[1.06-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16p13.13	16	11745470	TXNDC11	TXNDC11 - ZC3H7A	51061	29066		        2.68	        5.12	rs4780401-T	rs4780401	0	4780401	Intergenic	1	0.59	9E-9	8.045757490560675	(EA)	   1.09	[1.06-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16p13.13	16	11745470	TXNDC11	TXNDC11 - ZC3H7A	51061	29066		        2.68	        5.12	rs4780401-T	rs4780401	0	4780401	Intergenic	1	0.56	4E-8	7.397940008672037		   1.07	[1.05-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	19p13.2	19	10352442	TYK2	TYK2			7297			rs34536443-G	rs34536443	0	34536443	missense	0	0.95	5E-16	15.30102999566398	(EA)	   1.46	[1.33-1.60] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q11.21	22	21624807	UBE2L3, YDJC	UBE2L3 - YDJC	7332	150223		         .77	        3.28	rs11089637-C	rs11089637	0	11089637	Intergenic	1	0.26	2E-9	8.698970004336019		   1.08	[1.05-1.11] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q11.21	22	21624807	UBE2L3, YDJC	UBE2L3 - YDJC	7332	150223		         .77	        3.28	rs11089637-C	rs11089637	0	11089637	Intergenic	1	0.16	2E-7	6.698970004336019	(EA)	   1.10	[1.06-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q11.23	10	48889774	WDFY4	WDFY4			57705			rs2671692-A	rs2671692	0	2671692	intron	0	0.52	3E-9	8.522878745280337		   1.07	[1.05-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p11.22	10	31126177	ZNF438	DDX10P1 - RNA5SP309	100421371	100873583		      205.05	      133.42	rs793108-T	rs793108	0	793108	Intergenic	1	0.49	1E-9	8.999999999999998		   1.08	[1.05-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p11.22	10	31126177	ZNF438	DDX10P1 - RNA5SP309	100421371	100873583		      205.05	      133.42	rs793108-T	rs793108	0	793108	Intergenic	1	0.5	6E-7	6.221848749616355	(EA)	   1.07	[1.04-1.10] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	10	9007290	Intergenic	RNA5SP299 - LINC00709	100873574	100507163		      350.46	      268.32	rs12413578-C	rs12413578	0	12413578	Intergenic	1	0.9	8E-8	7.096910013008055	(EA)	   1.20	[1.12-1.29] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.13	1	17346235	PADI4	PADI4			23569			rs2301888-G	rs2301888	0	2301888	intron	0	0.58	1E-18	18		   1.13	[1.10-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p15	2	62233985	B3GNT2	MIR5192 - TMEM17	100847087	200728		       28.07	      226.91	rs13385025-A	rs13385025	0	13385025	Intergenic	1	0.17	9E-7	6.045757490560675		   1.11	[1.07-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p16.1	4	10725733	CLNK	CLNK - RNPS1P1	116449	643446		       40.97	      643.09	rs13142500-C	rs13142500	0	13142500	Intergenic	1	0.49	3E-9	8.522878745280337		   1.10	[1.07-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	5q31.1	5	132094425	IL3, CSF2	CSF2 - P4HA2-AS1	1437	100861518		       18.26	       90.45	rs657075-A	rs657075	0	657075	Intergenic	1	0.17	8E-7	6.096910013008056		   1.09	[1.05-1.13] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.32	6	32460995	HLA-DRB1	TRNAI25			100189401			rs9268839-G	rs9268839	0	9268839		0	0.45	1E-250	250		   2.28	[2.22-2.34] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	6p21.1	6	44266184	NFKBIE	NFKBIE			4794			rs2233424-T	rs2233424	0	2233424	nearGene-5	0	0.12	1E-19	19		   1.26	[1.20-1.32] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q32.33	14	104926500	PLD4, AHNAK2	PLD4			122618			rs2582532-C	rs2582532	0	2582532	intron	0	0.86	3E-7	6.522878745280337		   1.17	[1.10-1.24] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16q24.1	16	85985481	IRF8	MIR6774 - LINC01082	102466732	100506542		       67.07	      210.70	rs13330176-A	rs13330176	0	13330176	Intergenic	1	0.3	1E-12	12		   1.12	[1.09-1.16] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.3	21	42434957	UBASH3A	UBASH3A			53347			rs1893592-A	rs1893592	0	1893592	intron	0	0.73	7E-12	11.15490195998574		   1.11	[1.08-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			P2RY10	 - 						chrX:78464616-A	chrX:78464616					0.33	4E-8			   1.11	[1.07-1.15] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	1	38168207	LOC339442	MIR3659 - TUBB6P1	100500801	100418964		       78.88	      215.64	rs12140275-A	rs12140275	0	12140275	Intergenic	1	0.81	2E-9	8.698970004336019		   1.11	[1.07-1.14] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q23.3	1	161435263	FCGR2A	TRNAN32 - TRNAG7	100189402	100188997		        7.11	        4.91	rs72717009-T	rs72717009	0	72717009	Intergenic	1	0.1	1E-7	7		   1.13	[1.08-1.18] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.1	2	201289674	CFLAR, CASP8	ALS2CR12			130540			rs6715284-G	rs6715284	0	6715284	intron	0	0.1	2E-9	8.698970004336019		   1.15	[1.10-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	19p13.11	19	17323284	ANKRD55	ANO8;DDA1			57719;79016			rs77331626-G	rs77331626	0	77331626	UTR-3;UTR-3	0	0.71	7E-24	23.15490195998574		   1.21	[1.17-1.26] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	8q24.21	8	128529854	PVT1	LINC01263 - LINC00977	101927774	728724		      101.94	      686.61	rs1516971-T	rs1516971	0	1516971	Intergenic	1	0.89	1E-10	10		   1.15	[1.10-1.20] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	10	9007290	Intergenic	RNA5SP299 - LINC00709	100873574	100507163		      350.46	      268.32	rs12413578-C	rs12413578	0	12413578	Intergenic	1	0.9	5E-8	7.30102999566398		   1.20	[1.13-1.29] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/05/2014	24390342	Okada Y	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390342	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	NR			ATM	 - 						chr11:107967350-A	chr11:107967350					0.92	1E-8			   1.21	[1.13-1.29] 	Affymetrix & Illumina [up to 9,739,303] (Imputed)	N
08/02/2014	24390345	Williams AL	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390345	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean cases, 1959 Singaporean controls	17p13.1	17	7041768	SLC16A11, SLC16A13	SLC16A11			162515			rs75493593-?	rs75493593	0	75493593	missense	0	NR	5E-15	14.30102999566398		   1.25	[1.18-1.32] 	Illumina [9.2 million] (Imputed)	N
08/02/2014	24390345	Williams AL	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390345	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean cases, 1959 Singaporean controls	9p21.1	9	28772702	LINGO2	LINGO2			158038			rs824248-T	rs824248	0	824248	intron	0	NR	8E-6	5.096910013008055		   1.18	[1.10-1.26] 	Illumina [9.2 million] (Imputed)	N
08/02/2014	24390345	Williams AL	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390345	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean cases, 1959 Singaporean controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	NR	1E-14	14		   1.37	[1.27-1.48] 	Illumina [9.2 million] (Imputed)	N
08/02/2014	24390345	Williams AL	12/25/2013	Nature	http://www.ncbi.nlm.nih.gov/pubmed/24390345	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean cases, 1959 Singaporean controls	11p15.4	11	2837316	KCNQ1	KCNQ1			3784			rs2237897-C	rs2237897	0	2237897	intron	0	NR	9E-15	14.04575749056067		   1.31	[1.22-1.41] 	Illumina [9.2 million] (Imputed)	N
08/01/2014	24376798	Miki D	12/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24376798	HLA-DQB1*03 confers susceptibility to chronic hepatitis C in Japanese: a genome-wide association study.	Chronic hepatitis C infection	481 Japanese ancestry cases, 2,963 Japanese ancestry controls	5,737 Japanese ancestry cases, 26,931 Japanese ancestry controls	6p21.32	6	32711222	HLA-DQB1, HLA-DQA1	TRNAI25			100189401			rs9275572-T	rs9275572	0	9275572		0	0.359	4E-16	15.39794000867204		   1.27	[1.19-1.33] 	Illumina [458,207]	N
08/03/2014	24357727	Rocanin-Arjo A	12/19/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/24357727	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	9q32	9	114321523	ORM1	ORM1			5004			rs150611042-A	rs150611042	0	150611042	nearGene-5	0	0.082	7E-15	14.15490195998574	(Lag Time)	    .35	[0.27-0.44] min decrease	NR [6,652,054] (Imputed)	N
08/03/2014	24357727	Rocanin-Arjo A	12/19/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/24357727	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	9q32	9	114321523	ORM1	ORM1			5004			rs150611042-A	rs150611042	0	150611042	nearGene-5	0	0.082	8E-6	5.096910013008055	(ETP)	    .04	[0.020-0.056] nM/min decrease	NR [6,652,054] (Imputed)	N
08/03/2014	24357727	Rocanin-Arjo A	12/19/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/24357727	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	11p11.2	11	47351874	MYBPC3	MYBPC3			4607			rs2856656-C	rs2856656	0	2856656	intron	0	NR	5E-22	21.30102999566398	(ETP)	    .19	[0.15-0.23] nM/min increase	NR [6,652,054] (Imputed)	N
08/03/2014	24357727	Rocanin-Arjo A	12/19/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/24357727	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	11p11.2	11	48042642	NR	PTPRJ			5795			rs138315285-A	rs138315285	0	138315285	intron	0	NR	6E-11	10.22184874961635	(Peak)	  35.81	[25.11-46.51] nM increase	NR [6,652,054] (Imputed)	N
08/05/2014	24351856	Nanayakkara S	12/18/2013	J Occup Health	http://www.ncbi.nlm.nih.gov/pubmed/24351856	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Chronic kidney disease	301 Sinhalese Sri Lankan ancestry cases, 276 Sinhalese Sri Lankan ancestry controls	NA	20q13.12	20	46659814	SLC13A3	SLC13A3			64849			rs6066043-G	rs6066043	0	6066043	intron	0	0.62	2E-9	8.698970004336019		   2.13	[NR] 	Illumina [543,848]	N
08/02/2014	24351856	Nanayakkara S	12/18/2013	J Occup Health	http://www.ncbi.nlm.nih.gov/pubmed/24351856	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sinhalese Sri Lankan ancestry cases, 276 Sinhalese Sri Lankan ancestry controls	NA	1p21.1	1	102260843	OLFM3	DNAJA1P5 - COL11A1	94236	1301		      366.10	      615.62	rs17126268-C	rs17126268	0	17126268	Intergenic	1	0.10	7E-7	6.154901959985743		   2.78	[NR] unit increase	Illumina [543,848]	N
08/02/2014	24351856	Nanayakkara S	12/18/2013	J Occup Health	http://www.ncbi.nlm.nih.gov/pubmed/24351856	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sinhalese Sri Lankan ancestry cases, 276 Sinhalese Sri Lankan ancestry controls	NA	4p16.3	4	4251229	TMEM128	TMEM128 - LYAR	85013	55646		        2.99	       16.47	rs2980098-G	rs2980098	0	2980098	Intergenic	1	0.49	4E-6	5.397940008672037		   9.11	[NR] unit increase	Illumina [543,848]	N
08/02/2014	24351856	Nanayakkara S	12/18/2013	J Occup Health	http://www.ncbi.nlm.nih.gov/pubmed/24351856	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sinhalese Sri Lankan ancestry cases, 276 Sinhalese Sri Lankan ancestry controls	NA	8p23.1	8	9400229	LOC157273	PPP1R3B - TNKS	79660	8658		      248.59	      155.02	rs10099338-G	rs10099338	0	10099338	Intergenic	1	0.10	4E-6	5.397940008672037		  13.28	[NR] unit increase	Illumina [543,848]	N
08/02/2014	24351856	Nanayakkara S	12/18/2013	J Occup Health	http://www.ncbi.nlm.nih.gov/pubmed/24351856	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sinhalese Sri Lankan ancestry cases, 276 Sinhalese Sri Lankan ancestry controls	NA	20q13.12	20	46659814	SLC13A3	SLC13A3			64849			rs6066043-A	rs6066043	0	6066043	intron	0	0.38	2E-9	8.698970004336019		  12.17	[NR] unit increase	Illumina [543,848]	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	18q12.1	18	28206916	CDH2	CDH2 - ARIH2P1	1000	390844		       29.44	      444.61	rs11659841-?	rs11659841	0	11659841	Intergenic	1	0.13	9E-6	5.045757490560675	(PD1)	   2.48	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	18q12.2	18	36672786	FHOD3, TPGS2, KIAA1328	FHOD3			80206			rs8094794-?	rs8094794	0	8094794	intron	0	0.79	6E-6	5.221848749616356	(PD1)	   2.17	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	8q24.13	8	121684892	HAS2, HAS2AS	HAS2-AS1 - MRPS36P3	594842	347704		       39.57	      406.58	rs3870371-?	rs3870371	0	3870371	Intergenic	1	0.32	6E-6	5.221848749616356	(PD1)	   2.15	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	4p15.33	4	13241173	HSP90AB2P, RAB28, BOD1L, NKX3-2	RNA5SP156 - HSP90AB2P	100873422	391634		     1827.01	       95.21	rs733048-?	rs733048	0	733048	Intergenic	1	0.22	1E-6	5.999999999999999	(PD1)	   2.40	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	11p15.4	11	6728826	NR	GVINP1 - GVINP2	387751	100128135		        6.95	       19.30	rs12799172-?	rs12799172	0	12799172	Intergenic	1	0.64	5E-6	5.301029995663981	(PD1)	   2.12	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	6q22.33	6	129553210	LAMA2, ARHGAP18	LOC102723409			102723409			rs7749983-?	rs7749983	0	7749983	intron	0	0.19	2E-6	5.698970004336018	(PD1)	   2.39	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	4p15.33	4	13241173	HSP90AB2P, RAB28, BOD1L, NKX3-2	RNA5SP156 - HSP90AB2P	100873422	391634		     1827.01	       95.21	rs733048-?	rs733048	0	733048	Intergenic	1	0.22	4E-6	5.397940008672037	(PD2)	   1.95	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	3p23	3	31940275	OSBPL10, ZNF860, GPD1L, CMTM8, STT3B	OSBPL10			114884			rs12630931-?	rs12630931	0	12630931	intron	0	0.3	6E-6	5.221848749616356	(PD2)	   1.89	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	14q31.1	14	81832829	SEL1L	RPL9P6 - EIF3LP1	326311	319117		       55.20	       83.37	rs12589327-?	rs12589327	0	12589327	Intergenic	1	0.39	7E-6	5.154901959985742	(PD2)	   2.13	[NR] 	Illumina [~1.4 million] (Imputed)	N
08/02/2014	24347629	Shaffer JR	12/17/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/24347629	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotypes	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	14q21.3	14	50389923	SOS2, L2HGDH, ATP5S, CDKL1, MAP4K5, ATL1, SAV1, NIN	CDKL1			8814			rs3783412-?	rs3783412	0	3783412	intron	0	0.53	8E-6	5.096910013008055	(PD2)	   1.85	[NR] 	Illumina [~1.4 million] (Imputed)	N
07/30/2014	24379826	Voruganti VS	12/16/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24379826	Genome-wide association analysis confirms and extends the association of SLC2A9 with serum uric acid levels to Mexican Americans.	Serum uric acid levels	632 Mexican American individuals	NA	4p16.1	4	9922695	SLC2A9	SLC2A9			56606			rs6832439-A	rs6832439	0	6832439	intron	0	0.36	3E-8	7.522878745280337		NR	NR	Illumina [NR] (imputed)	N
07/30/2014	24379826	Voruganti VS	12/16/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24379826	Genome-wide association analysis confirms and extends the association of SLC2A9 with serum uric acid levels to Mexican Americans.	Serum uric acid levels	632 Mexican American individuals	NA	3p26.2	3	2779932	CNTN4	CNTN4			152330			rs7652782-A	rs7652782	0	7652782	intron	0	0.06	7E-7	6.154901959985743		NR	NR	Illumina [NR] (imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	2p23.2	2	29025131	FAM179A	FAM179A			165186			rs13008299-G	rs13008299	0	13008299	intron	0	0.29	7E-8	7.154901959985742	(drinks/week)	    .07	[0.033-0.103] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	10q24.1	10	97049946	SLIT1	SLIT1			6585			rs7902871-G	rs7902871	0	7902871	intron	0	0.81	1E-6	5.999999999999999	(drinks/week)	    .12	[0.075-0.165] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	13q31.1	13	78451652	RNF219-AS1	RNF219-AS1			100874222			rs9318552-T	rs9318552	0	9318552	intron	0	0.79	5E-8	7.30102999566398	(Oz alcohol/week)	    .39	[0.25-0.53] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	18q22.3	18	74037957	FBXO15	MIR548AV - FBXO15	100847083	201456		     1184.58	       35.30	rs1943940-C	rs1943940	0	1943940	Intergenic	1	0.47	6E-7	6.221848749616355	(drinks/week)	    .10	[0.053-0.147] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	1q41	1	216583479	ESRRG	ESRRG			2104			rs17669622-A	rs17669622	0	17669622	intron	0	0.25	9E-7	6.045757490560675	(drinks/week)	    .09	[0.049-0.139] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	1q42.13	1	229201099	RAB4A	ISCA1P2 - RAB4A	100288517	5867		      158.51	       69.96	rs16849553-C	rs16849553	0	16849553	Intergenic	1	0.009	7E-7	6.154901959985743	(Oz alcohol/week)	   1.45	[0.95-1.95] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	3p24.3	3	20060071	KAT2B	KAT2B			8850			rs9874923-T	rs9874923	0	9874923	intron	0	0.43	4E-7	6.397940008672037	(drinks/week)	    .10	[0.063-0.145] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	5p15.32	5	5822534	Intergenic	KIAA0947 - HMGB3P3	23379	100419949		      332.30	      467.27	rs3852160-C	rs3852160	0	3852160	Intergenic	1	0.39	2E-6	5.698970004336018	(Days drinks/week)	    .53	[0.34-0.71] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	5p15.31	5	7243868	ADCY2	RNA5SP176 - ADCY2	100873438	108		      196.53	      152.36	rs4537030-G	rs4537030	0	4537030	Intergenic	1	0.38	7E-7	6.154901959985743	(drinks/week)	    .09	[0.046-0.128] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	7p14.1	7	42345021	GLI3	HMGN2P30 - TCP1P1	100131183	647047		      230.57	      449.88	rs7791745-T	rs7791745	0	7791745	Intergenic	1	0.8	7E-7	6.154901959985743	(drinks/week)	    .20	[0.12-0.27] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	10q21.2	10	59620724	SLC16A9	MRPL50P4 - SLC16A9	359751	220963		       68.85	       30.04	rs10826334-G	rs10826334	0	10826334	Intergenic	1	0.92	9E-7	6.045757490560675	(Oz alcohol/week)	    .53	[0.31-0.75] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	10q24.1	10	97034302	SLIT1	SLIT1			6585			rs12773465-G	rs12773465	0	12773465	intron	0	0.84	2E-7	6.698970004336019	(drinks/week)	    .16	[0.098-0.220] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	18q22.3	18	74037957	FBXO15	MIR548AV - FBXO15	100847083	201456		     1184.58	       35.30	rs1943940-C	rs1943940	0	1943940	Intergenic	1	0.47	8E-7	6.096910013008056	(drinks/week)	    .11	[0.053-0.159] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	2p21	2	46659003	CRIPT, SOCS5	CRIPT - SOCS5	9419	9655		       28.83	       39.96	rs4953404-G	rs4953404	0	4953404	Intergenic	1	0.72	8E-7	6.096910013008056	(Days drinks/week)	    .01	[-0.01164-0.02364] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	7p11.2	7	57524150	ZNF716	VN1R29P - NCOR1P3	100312786	100874183		       46.66	       75.64	rs11766519-C	rs11766519	0	11766519	Intergenic	1	0.13	1E-7	7	(Days drinks/week)	    .10	[0.067-0.137] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	11p12	11	39404549	Intergenic	RPL18P8 - LRRC4C	100129670	57689		      242.58	      709.65	rs12292796-C	rs12292796	0	12292796	Intergenic	1	0.07	3E-7	6.522878745280337	(drinks/week)	    .00	[-0.00288-0.00888] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	2p21	2	46659003	CRIPT, SOCS5	CRIPT - SOCS5	9419	9655		       28.83	       39.96	rs4953404-G	rs4953404	0	4953404	Intergenic	1	0.72	1E-6	5.999999999999999	(Oz alcohol/week)	    .00	[-0.01076-0.01276] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	1p31.1	1	78421523	MGC27382, PTGFR	RNA5SP23 - PTGFR	100873278	5737		       46.26	       54.72	rs648425-T	rs648425	0	648425	Intergenic	1	0.02	8E-7	6.096910013008056	(drinks/week)	    .32	[0.082-0.552] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	10q21.2	10	59620724	SLC16A9	MRPL50P4 - SLC16A9	359751	220963		       68.85	       30.04	rs10826334-G	rs10826334	0	10826334	Intergenic	1	0.91	1E-8	8	(drinks/week)	    .24	[0.14-0.34] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	11p14.3	11	23933767	Intergenic	RPS2P38 - LUZP2	196188	338645		      412.53	      563.20	rs7116456-T	rs7116456	0	7116456	Intergenic	1	0.003	1E-7	7	(drinks/week)	    .93	[0.6-1.26] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	12p12.2	12	20446178	PDE3A	PDE3A			5139			rs10841530-G	rs10841530	0	10841530	intron	0	0.56	6E-7	6.221848749616355	(drinks/week)	    .16	[0.098-0.212] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	12q21.33	12	91080645	KERA, LUM	KERA - LUM	11081	4060		       22.29	       22.81	rs991427-T	rs991427	0	991427	Intergenic	1	0.14	2E-7	6.698970004336019	(Oz alcohol/week)	    .41	[0.14-0.68] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	16q23.1	16	78019746	CLEC3A	VAT1L - CLEC3A	57687	10143		       39.64	        2.80	rs2735413-A	rs2735413	0	2735413	Intergenic	1	0.31	9E-7	6.045757490560675	(drinks/week)	    .16	[0.089-0.227] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	16q24.1	16	84304628	WFDC1	WFDC1			58189			rs16963349-C	rs16963349	0	16963349	intron	0	0.002	1E-7	7	(drinks/week)	   1.18	[0.67-1.68] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	21q22.2	21	39808149	IGSF5	IGSF5 - PCP4	150084	5121		        6.05	       59.27	rs2410182-A	rs2410182	0	2410182	Intergenic	1	0.4	7E-7	6.154901959985743	(Oz alcohol/week)	    .45	[0.27-0.63] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	21q22.2	21	39849329	IGSF5, PCP4	IGSF5 - PCP4	150084	5121		       47.23	       18.09	rs2837253-A	rs2837253	0	2837253	Intergenic	1	0.3	8E-7	6.096910013008056	(drinks/week)	    .18	[0.11-0.25] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	10q21.2	10	59620724	SLC16A9	MRPL50P4 - SLC16A9	359751	220963		       68.85	       30.04	rs10826334-G	rs10826334	0	10826334	Intergenic	1	0.92	4E-8	7.397940008672037	(Oz alcohol/week)	    .86	[0.54-1.19] unit decrease	Affymetrix [2.5 million] (Imputed)	N
07/29/2014	24376456	Simino J	12/12/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24376456	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	12q21.33	12	91083337	KERA, LUM	KERA - LUM	11081	4060		       24.98	       20.12	rs4494364-A	rs4494364	0	4494364	Intergenic	1	0.14	2E-7	6.698970004336019	(drinks/week)	    .14	[0.058-0.226] unit increase	Affymetrix [2.5 million] (Imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	15q26.1	15	93346230	SEPHS1P2, MCTP2	UNQ9370 - SEPHS1P2	400454	100420292		      138.19	       84.43	rs17541406-?	rs17541406	0	17541406	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	10q25.2	10	113120792	TCF7L2	TCF7L2			6934			rs12772424-?	rs12772424	0	12772424	intron	0	NR	3E-8	7.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	16q23.1	16	78432807	WWOX	WWOX			51741			rs11150078-?	rs11150078	0	11150078	intron	0	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q24.32	12	125658800	TMEM132B	TMEM132B			114795			rs1043607-?	rs1043607	0	1043607	UTR-3	0	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	10q22.1	10	71662527	CDH23	CDH23			64072			rs1625975-?	rs1625975	0	1625975	intron	0	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	4q31.21	4	144275053	GYPA	GYPA - KRT18P51	2993	391703		      134.30	      297.19	rs7690204-?	rs7690204	0	7690204	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q21	6	112803099	LOC100287612, MARCKS	PA2G4P5 - SOCS5P5	389424	643884		      185.07	      419.07	rs6934970-?	rs6934970	0	6934970	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	2p14	2	66031567	MIR4778	KRT18P33 - MIR4778	647162	100616464		      363.77	      326.68	rs2699783-?	rs2699783	0	2699783	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q21.3	5	107945920	FBXL17	FBXL17			64839			rs10070308-?	rs10070308	0	10070308	intron	0	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	3	140651170	TRIM42	LOC102724068			102724068			rs72977016-?	rs72977016	0	72977016	intron	0	NR	7E-9	8.154901959985743		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	3	140698604	NR	TRIM42			287015			rs79436609-?	rs79436609	0	79436609	intron	0	NR	3E-8	7.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	10q25.2	10	113114260	NR	TCF7L2			6934			rs290475-?	rs290475	0	290475	intron	0	NR	3E-7	6.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q24.31	12	125062029	NR	BRI3BP - AACS	140707	65985		       36.23	        3.35	rs12300899-?	rs12300899	0	12300899	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	17p13.1	17	6878094	NR	ALOX12P2			245			rs58630086-?	rs58630086	0	58630086	intron	0	NR	6E-7	6.221848749616355		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	8q21.3	8	92207493	NR	RPS26P10 - FLJ46284	401470	441369		       63.03	      505.47	rs116951791-?	rs116951791	0	116951791	Intergenic	1	NR	7E-7	6.154901959985743		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	1p34.2	1	43222879	NR	WDR65			149465			rs150404479-?	rs150404479	0	150404479	missense	0	NR	1E-6	5.999999999999999		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	19q13.41	19	51835388	NR	FPR3 - ZNF577	2359	84765		        9.31	        4.18	rs62110082-?	rs62110082	0	62110082	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q15	5	93007488	NR	CCT7P2 - POLD2P1	100288772	391811		      116.57	      259.85	rs147721431-?	rs147721431	0	147721431	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	15q11.2	15	23402602	NR	GOLGA8S - HERC2P6	653061	8918		       34.28	       28.24	rs183418565-?	rs183418565	0	183418565	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	2p16.1	2	55191799	NR	CLHC1			130162			rs7588591-?	rs7588591	0	7588591	intron	0	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q21	6	112813274	NR	PA2G4P5 - SOCS5P5	389424	643884		      195.24	      408.89	rs10782174-?	rs10782174	0	10782174	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	18	67802897	NR	LOC643542			643542			rs11660238-?	rs11660238	0	11660238	intron	0	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	18	67804281	NR	LOC643542			643542			rs74789784-?	rs74789784	0	74789784	intron	0	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	18	67804806	NR	LOC643542			643542			rs75687134-?	rs75687134	0	75687134	intron	0	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q31.3	5	144031781	NR	HMHB1 - YIPF5	57824	81555		      211.06	      126.38	rs391760-?	rs391760	0	391760	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q21.3	5	107946648	NR	FBXL17			64839			rs72795980-?	rs72795980	0	72795980	intron	0	NR	2E-6	5.698970004336018		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q31.3	5	144043380	NR	HMHB1 - YIPF5	57824	81555		      222.66	      114.78	rs409220-?	rs409220	0	409220	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q15	12	68562405	NR	RPSAP12 - RAP1B	387867	5908		        8.45	       48.43	rs114588203-?	rs114588203	0	114588203	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q15	12	68563384	NR	RPSAP12 - RAP1B	387867	5908		        9.43	       47.46	rs116075389-?	rs116075389	0	116075389	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q33.3	5	157518140	NR	ADAM19			8728			rs58873874-?	rs58873874	0	58873874	intron	0	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q26.31	3	175506108	NR	NAALADL2			254827			rs74619861-?	rs74619861	0	74619861	intron	0	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	20q13.2	20	53161584	NR	TSHZ2			128553			rs118174081-?	rs118174081	0	118174081	intron	0	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	20p11.23	20	19885312	NR	RIN2			54453			rs4814920-?	rs4814920	0	4814920	intron	0	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q21.3	5	107946647	NR	FBXL17			64839			rs72795979-?	rs72795979	0	72795979	intron	0	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5p13.3	5	31917136	NR	PDZD2			23037			rs11957407-?	rs11957407	0	11957407	intron	0	NR	3E-6	5.522878745280337		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	3	140963071	NR	SLC25A36			55186			rs150888153-?	rs150888153	0	150888153	intron	0	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	3	140957958	NR	SLC25A36			55186			rs141220432-?	rs141220432	0	141220432	intron	0	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	7q31.33	7	126256694	NR	RPL31P39 - GRM8	641790	2918		      955.79	      181.90	rs117982730-?	rs117982730	0	117982730	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6p12.3	6	50384423	NR	TRNAI25			100189401			rs6921059-?	rs6921059	0	6921059		0	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	NR			NR	 - 						rs191753171-?	rs191753171					NR	4E-6			NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q15	12	68561792	NR	RPSAP12 - RAP1B	387867	5908		        7.83	       49.05	rs150516896-?	rs150516896	0	150516896	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q21	6	112839142	NR	PA2G4P5 - SOCS5P5	389424	643884		      221.11	      383.02	rs62421103-?	rs62421103	0	62421103	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	7q22.3	7	105582004	NR	EFCAB10			100130771			rs116979167-?	rs116979167	0	116979167	nearGene-5	0	NR	5E-6	5.301029995663981		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	7q22.3	7	105526406	NR	PUS7			54517			rs6963495-?	rs6963495	0	6963495	intron	0	NR	5E-6	5.301029995663981		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	20q13.33	20	61531817	NR	CDH4			1002			rs116896199-?	rs116896199	0	116896199	intron	0	NR	5E-6	5.301029995663981		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	16q24.2	16	87644970	NR	JPH3			57338			rs34975147-?	rs34975147	0	34975147	cds-synon	0	NR	5E-6	5.301029995663981		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	22q13.32	22	48527647	NR	FAM19A5			25817			rs80088139-?	rs80088139	0	80088139	intron	0	NR	5E-6	5.301029995663981		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	6q23.3	6	136224135	NR	COX5BP2 - MTFR2	1331	113115		      189.25	        6.90	rs113508841-?	rs113508841	0	113508841	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	18	67803512	NR	LOC643542			643542			rs114535501-?	rs114535501	0	114535501	intron	0	NR	6E-6	5.221848749616356		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	18	67816575	NR	LOC643542;LOC101927430			643542;101927430			rs11661646-?	rs11661646	0	11661646	intron;nearGene-5	0	NR	6E-6	5.221848749616356		NR	NR	NR [up to 8,466,825] (imputed)	N
07/28/2014	24322204	Winham SJ	12/10/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24322204	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	5q33.3	5	157543136	NR	ADAM19			8728			rs77372450-?	rs77372450	0	77372450	intron	0	NR	6E-6	5.221848749616356		NR	NR	NR [up to 8,466,825] (imputed)	N
07/29/2014	24325915	Purrington KS	12/09/2013	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/24325915	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	1q32.1	1	204549714	MDM4	MDM4			4194			rs4245739-C	rs4245739	0	4245739	ncRNA	0	NR	4E-6	5.397940008672037		   1.19	[1.11-1.29] 	Illumina [NR] (imputed)	N
07/29/2014	24325915	Purrington KS	12/09/2013	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/24325915	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	5p15.33	5	1279675	TERT	TERT			7015			rs10069690-A	rs10069690	0	10069690	intron	0	NR	1E-7	7		   1.24	[1.14-1.34] 	Illumina [NR] (imputed)	N
07/29/2014	24325915	Purrington KS	12/09/2013	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/24325915	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	6q25.1	6	151592978	ESR1	CCDC170			80129			rs3757318-A	rs3757318	0	3757318	intron	0	NR	9E-6	5.045757490560675		   1.33	[1.17-1.51] 	Illumina [NR] (imputed)	N
07/29/2014	24325915	Purrington KS	12/09/2013	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/24325915	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	19p13.11	19	17283315	Intergenic	ANKLE1			126549			rs2363956-C	rs2363956	0	2363956	missense	0	NR	2E-8	7.698970004336018		   1.22	[1.14-1.3] 	Illumina [NR] (imputed)	N
07/29/2014	24325915	Purrington KS	12/09/2013	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/24325915	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	12p11.22	12	28002147	PTHLH	PTHLH - CCDC91	5744	55297		       30.16	      188.28	rs10771399-G	rs10771399	0	10771399	Intergenic	1	NR	2E-8	7.698970004336018		   1.39	[1.25-1.56] 	Illumina [NR] (imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	17	27879388	LYRM9	LYRM9			201229			rs3751972-C	rs3751972  	0	3751972	UTR-3	0	0.25	2E-10	9.698970004336017		    .09	[0.059-0.113] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	17	27765011	NOS2	NOS2			4843			rs944722-C	rs944722  	0	944722	intron	0	0.38	1E-9	8.999999999999998		    .07	[0.049-0.097] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q12	17	39900944	ZPBP2, GSDMB	ZPBP2 - GSDMB	124626	55876		       23.05	        3.65	rs8069176-A	rs8069176  	0	8069176	Intergenic	1	0.43	2E-8	7.698970004336018		    .07	[0.042-0.09] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q25	4	112934321	ANK2	ANK2			287			rs12500579-G	rs12500579  	0	12500579	intron	0	0.06	8E-8	7.096910013008055		    .19	[0.12-0.26] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	8p22	8	13201165	DLC1	DLC1			10395			rs2016444-G	rs2016444  	0	2016444	intron	0	0.09	9E-7	6.045757490560675		    .13	[0.079-0.181] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q13.3	4	71162828	SLC4A4	SLC4A4			8671			rs7685921-G	rs7685921  	0	7685921	intron	0	0.13	9E-7	6.045757490560675		    .12	[0.069-0.163] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	3p14.3	3	54766289	LRTM1	CACNA2D3			55799			rs1820616-T	rs1820616  	0	1820616	intron	0	0.06	3E-6	5.522878745280337		    .11	[0.066-0.16] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	1q25.2	1	176454004	PAPPA2	MORF4L1P7 - PAPPA2	100130637	60676		       85.37	        9.17	rs4471226-C	rs4471226  	0	4471226	Intergenic	1	0.1	3E-6	5.522878745280337		    .10	[0.056-0.138] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	18q22.3	18	72879235	NETO1	LOC100505797			100505797			rs2156107-C	rs2156107  	0	2156107	intron	0	0.05	3E-6	5.522878745280337		    .14	[0.083-0.205] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	8q23.1	8	107365673	ANGPT1	ANGPT1			284			rs2163870-G	rs2163870  	0	2163870	intron	0	0.35	3E-6	5.522878745280337		    .06	[0.033-0.081] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	19q12	19	30888202	TSHZ3	ZNF536 - TSHZ3	9745	57616		      177.38	      386.74	rs7245959-C	rs7245959  	0	7245959	Intergenic	1	0.43	3E-6	5.522878745280337		    .06	[0.034-0.084] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	13q12.3	13	30342126	KATNAL	LINC00426			100188949			rs12429252-G	rs12429252  	0	12429252	intron	0	0.19	4E-6	5.397940008672037		    .12	[0.068-0.166] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	9q34.12	9	130658892	PRDM12	RPL19P15 - PRDM12	642306	59335		        6.43	        5.70	rs3802344-A	rs3802344  	0	3802344	Intergenic	1	0.07	5E-6	5.301029995663981		    .11	[0.064-0.158] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	20q12	20	42781261	PTPRT	PTPRT			11122			rs13042473-G	rs13042473  	0	13042473	intron	0	0.19	8E-6	5.096910013008055		    .07	[0.038-0.1] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	12p13.33	12	2639961	CACNA1C	CACNA1C			775			rs216026-T	rs216026  	0	216026	intron	0	0.21	8E-6	5.096910013008055		    .07	[0.038-0.096] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	1q44	1	246209578	SMYD3	SMYD3			64754			rs10802346-C	rs10802346  	0	10802346	intron	0	0.15	8E-6	5.096910013008055		    .08	[0.043-0.109] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	18q22.3	18	72879235	NETO1	LOC100505797			100505797			rs2156107-C	rs2156107 	0	2156107	intron	0	0.03	1E-6	5.999999999999999	(EA)	    .20	[0.12-0.29] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	8p22	8	13201165	DLC1	DLC1			10395			rs2016444-G	rs2016444 	0	2016444	intron	0	0.01	1E-12	12	(EA)	    .29	[0.21-0.37] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	20q12	20	42781261	PTPRT	PTPRT			11122			rs13042473-G	rs13042473 	0	13042473	intron	0	0.18	2E-6	5.698970004336018	(EA)	    .09	[0.053-0.127] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	17	27765011	NOS2	NOS2			4843			rs944722-C	rs944722 	0	944722	intron	0	0.4	3E-7	6.522878745280337	(EA)	    .08	[0.046-0.104] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q12	17	39900944	ZPBP2, GSDMB	ZPBP2 - GSDMB	124626	55876		       23.05	        3.65	rs8069176-A	rs8069176 	0	8069176	Intergenic	1	0.45	5E-6	5.301029995663981	(EA)	    .07	[0.039-0.093] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q25	4	112934321	ANK2	ANK2			287			rs12500579-G	rs12500579 	0	12500579	intron	0	0.01	5E-13	12.30102999566398	(EA)	    .42	[0.31-0.53] unit decrease	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	19q12	19	30888202	TSHZ3	ZNF536 - TSHZ3	9745	57616		      177.38	      386.74	rs7245959-C	rs7245959 	0	7245959	Intergenic	1	0.44	6E-6	5.221848749616356	(EA)	    .07	[0.04-0.098] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	17	27879388	LYRM9	LYRM9			201229			rs3751972-C	rs3751972 	0	3751972	UTR-3	0	0.26	7E-9	8.154901959985743	(EA)	    .10	[0.064-0.126] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24315451	van der Valk RJ	12/05/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24315451	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	4q13.3	4	71162828	SLC4A4	SLC4A4			8671			rs7685921-G	rs7685921 	0	7685921	intron	0	0.13	9E-7	6.045757490560675	(EA)	    .12	[0.069-0.163] unit increase	Illumina & Affymetrix [2,253,077] (Imputed)	N
07/29/2014	24405752	An P	12/04/2013	Metabolism	http://www.ncbi.nlm.nih.gov/pubmed/24405752	Genome-wide association study identifies common loci influencing circulating glycated hemoglobin (HbA1c) levels in non-diabetic subjects: the Long Life Family Study (LLFS).	Glycated hemoglobin levels	4,088 European ancestry non-diabetic elderly individuals	up to 47,822 European ancestry non-diabetic elderly individuals	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-T	rs560887	0	560887	intron	0	0.33	1E-17	17		    .03	[0.024-0.040] unit decrease	Illumina [9.25 million] (Imputed)	N
07/26/2014	24324648	Yatagai Y	12/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324648	Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population.	IgE levels 	967 Japanese ancestry individuals, 213 Japanese ancestry asthmatics	1,894 Japanese ancestry individuals, 580 Japanese ancestry asthmatics	6p21.33	6	31229737	HLA-C, HCG27	TRNAI25			100189401			rs3130941-C	rs3130941	0	3130941		0	0.25	1E-10	10		    .10	 unit increase	Illumina [479,940]	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	0.39	1E-7	7		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	18q21.32	18	60006567	MC4R	NFE2L3P1 - SDCCAG3P1	642996	388478		       34.46	        3.42	rs12964056-A	rs12964056	0	12964056	Intergenic	1	0.24	7E-7	6.154901959985743		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	3p22.1	3	42258378	CCK	CCK			885			rs8192472-A	rs8192472	0	8192472	intron	0	0.37	1E-6	5.999999999999999		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	3q22.1	3	130418627	COL6A5	COL6A5			256076			rs1542829-?	rs1542829	0	1542829	intron	0	0.05	1E-8	8		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	14q23.2	14	62889535	KCNH5	KCNH5			27133			rs10136789-?	rs10136789	0	10136789	intron	0	NR	5E-7	6.30102999566398		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	22q12.3	22	35729217	APOL5	APOL5			80831			rs2016586-?	rs2016586	0	2016586	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	1p31.1	1	69741396	LRRC7	LRRC7			57554			rs10889850-?	rs10889850	0	10889850	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
07/29/2014	24348519	Namjou B	12/03/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24348519	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	2q24.1	2	154314627	GALNT13	GALNT13			114805			rs12693973-?	rs12693973	0	12693973	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina & Affymetrix [up to 583,824] (imputed)	N
08/06/2014	24778558	Domarkiene I	12/01/2013	Balkan J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24778558	RTN4 and FBXL17 Genes are Associated with Coronary Heart Disease in Genome-Wide Association Analysis of Lithuanian Families.	Coronary heart disease	31 European ancestry cases and 63 European ancestry controls from 32 families	NA	1q32.1	1	202500595	PPP1R12B	PPP1R12B			4660			rs12734338-G	rs12734338	0	12734338	intron	0	NR	3E-7	6.522878745280337		  29.00	[3.95-212.9] 	Illumina [646,445]	N
08/06/2014	24778558	Domarkiene I	12/01/2013	Balkan J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24778558	RTN4 and FBXL17 Genes are Associated with Coronary Heart Disease in Genome-Wide Association Analysis of Lithuanian Families.	Coronary heart disease	31 European ancestry cases and 63 European ancestry controls from 32 families	NA	4q25	4	110812980	Intergenic	PITX2 - MIR297	5308	100126354		      170.86	       47.60	rs3853444-G	rs3853444	0	3853444	Intergenic	1	NR	5E-6	5.301029995663981		   7.69	[2.70-20.0] 	Illumina [646,445]	N
08/06/2014	24778558	Domarkiene I	12/01/2013	Balkan J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24778558	RTN4 and FBXL17 Genes are Associated with Coronary Heart Disease in Genome-Wide Association Analysis of Lithuanian Families.	Coronary heart disease	31 European ancestry cases and 63 European ancestry controls from 32 families	NA	15q25.2	15	84545426	UBE2Q2P1	UBE2Q2P1			388165			rs3883013-G	rs3883013	0	3883013	intron	0	NR	3E-7	6.522878745280337		  29.00	[3.95-212.9] 	Illumina [646,445]	N
03/13/2014	23918589	Negi S	12/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23918589	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	5q11.2	5	54015672	ARL15	ARL15			54622			rs255758-C	rs255758	0	255758	intron	0	0.18	7E-6	5.154901959985742		   1.42	[1.22-1.66] 	Illumina [559,348]	N
03/13/2014	23918589	Negi S	12/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23918589	A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for rheumatoid arthritis in North Indians.	Rheumatoid arthritis	706 North Indian ancestry cases, 761 North Indian ancestry controls	927 North Indian ancestry cases, 1,148 North Indian ancestry controls	6p21.32	6	32702178	HLA-DQB1, HLA-DQA2, HLA-DQA1, C6orf10	TRNAI25			100189401			rs9275406-T	rs9275406	0	9275406		0	0.17	3E-12	11.52287874528034		   2.10	[1.72-2.68] 	Illumina [559,348]	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	3q26.2	3	169774313	MYNN	MYNN			55892			rs10936599-C	rs10936599	0	10936599	cds-synon	0	NR	2E-9	8.698970004336019		   1.26	[1.17-1.35] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	4q26	4	113762688	CAMK2D	CAMK2D			817			rs6858698-C	rs6858698	0	6858698	nearGene-5	0	NR	3E-9	8.522878745280337		   1.31	[1.20-1.44] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	5p15.33	5	1344343	CLPTM1L	CLPTM1L			81037			rs31490-A	rs31490	0	31490	intron	0	NR	2E-7	6.698970004336019		   1.18	[1.11-1.26] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6q25.2	6	154157305	IPCEF1	OPRM1;IPCEF1			4988;26034			rs2236256-C	rs2236256	0	2236256	intron;UTR-3	0	NR	2E-10	9.698970004336017		   1.23	[1.15-1.30] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	7q31.33	7	124822607	POT1	POT1			25913			rs17246404-C	rs17246404	0	17246404	ncRNA	0	NR	3E-8	7.522878745280337		   1.22	[1.14-1.31] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	2p22.2	2	37240121	QPCT, PRKD3	NDUFAF7			55471			rs2041840-C	rs2041840	0	2041840	intron	0	0.62	9E-6	5.045757490560675		   1.20	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	2q13	2	111114320	ACOXL, BCL2L11	ACOXL;FLJ44006			55289;400997			rs1439287-A	rs1439287	0	1439287	intron;nearGene-5	0	0.48	5E-15	14.30102999566398		   1.37	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	2q37.1	2	230226508	SP110, SP140	SP110;SP140			3431;11262			rs13397985-G	rs13397985	0	13397985	nearGene-5;intron	0	0.19	5E-13	12.30102999566398		   1.43	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p25.3	6	411064	IRF4	IRF4			3662			rs872071-G	rs872071	0	872071	ncRNA	0	0.51	3E-16	15.52287874528034		   1.39	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.32	6	32289789	HLA	C6orf10			10665			rs926070-A	rs926070	0	926070	intron	0	NR	4E-8	7.397940008672037	0.66	   1.27	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	6p21.31	6	33572432	BAK1	BAK1			578			rs210134-G	rs210134	0	210134	nearGene-3	0	0.68	3E-6	5.522878745280337		   1.31	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	8q24.21	8	127175774	POU5F1B	SRRM1P1 - CCAT1	401475	100507056		       87.24	       31.61	rs2466024-A	rs2466024	0	2466024	Intergenic	1	0.41	3E-6	5.522878745280337		   1.21	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	10q23.31	10	88990206	ACTA, FAS	ACTA2;FAS			59;355			rs1800682-A	rs1800682	0	1800682	intron;intron	0	0.54	2E-8	7.698970004336018		   1.25	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	11p15.5	11	2301599	C11orf21, TSPAN32	TSPAN32;C11orf21			10077;29125			rs11022157-A	rs11022157	0	11022157	nearGene-5;intron	0	0.36	3E-6	5.522878745280337		   1.22	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	11q24.1	11	123490689	SCN3B, GRAMD1B	GRAMD1B			57476			rs735665-A	rs735665	0	735665	intron	0	0.19	4E-24	23.39794000867204		   1.64	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	15q15.1	15	40121915	BMF, BUB1B	BMF - BUB1B	90427	701		       13.03	       39.09	rs8023845-G	rs8023845	0	8023845	Intergenic	1	0.78	2E-6	5.698970004336018		   1.27	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	15q21.3	15	56090097	RFX7, NEDD4	RFX7			64864			rs16976734-G	rs16976734	0	16976734	nearGene-3	0	0.11	4E-7	6.397940008672037		   1.36	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	15q23	15	69726651	RPLP1	RPLP1 - GEMIN8P1	6176	100128431		      271.11	       76.46	rs7176508-A	rs7176508	0	7176508	Intergenic	1	0.38	8E-18	17.09691001300806		   1.42	[NR] 	Illumina [450,000] (Imputed)	N
06/19/2014	24292274	Speedy HE	12/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24292274	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	16q24.1	16	85922065	IRF8	IRF8			3394			rs1044873-C	rs1044873	0	1044873	UTR-3	0	0.61	1E-9	8.999999999999998		   1.29	[NR] 	Illumina [450,000] (Imputed)	N
06/21/2014	24282030	Pan L	11/28/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24282030	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	6	32601914	HLA-DRB1, BTNL2, HLA-DRA, C6orf10	TRNAI25			100189401			rs477515-T	rs477515	0	477515		0	0.442	3E-19	18.52287874528033		   2.05	[1.75-2.41] 	Illumina [588,026]	N
06/21/2014	24282030	Pan L	11/28/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24282030	A genome-wide association study identifies polymorphisms in the HLA-DR region associated with non-response to hepatitis B vaccination in Chinese Han populations.	Hepatitis B vaccine response	108 Han Chinese ancestry high-responder cases, 77 Han Chinese ancestry non-responder controls	1,336 Han Chinese ancestry high-responder cases, 420 Han Chinese ancestry non-responder controls	6p21.32	6	32421871	HLA-DR	TRNAI25			100189401			rs3135363-?	rs3135363	0	3135363		0	NR	8E-7	6.096910013008056		   1.51	[1.28-1.78] 	Illumina [588,026]	N
07/25/2014	24281739	Boardman JD	11/27/2013	Demography	http://www.ncbi.nlm.nih.gov/pubmed/24281739	Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index.	Body mass index (education interaction)	816 non-college graduate individuals and 1,061 college graduate individuals	NA	5q23.3	5	130760567	NR	ARL2BPP4 - RPL11P2	100130265	133629		      230.47	      229.31	rs12518350-?	rs12518350	0	12518350	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [260,402]	N
07/25/2014	24281739	Boardman JD	11/27/2013	Demography	http://www.ncbi.nlm.nih.gov/pubmed/24281739	Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index.	Body mass index (education interaction)	816 non-college graduate individuals and 1,061 college graduate individuals	NA	9q31.3	9	110129355	NR	AKAP2;PALM2-AKAP2			11217;445815			rs17806457-?	rs17806457	0	17806457	intron;intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [260,402]	N
07/25/2014	24281739	Boardman JD	11/27/2013	Demography	http://www.ncbi.nlm.nih.gov/pubmed/24281739	Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index.	Body mass index (education interaction)	816 non-college graduate individuals and 1,061 college graduate individuals	NA	3p23	3	31926475	NR	OSBPL10			114884			rs6810295-?	rs6810295	0	6810295	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [260,402]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Alcohol consumption (maxi-drinks)	272 Han Chinese ancestry individuals	NA	5p15.2	5	10797774	NR	CTD-2154B17.1 - CTNND2	102723441	1501		       12.25	      174.07	rs6882716-?	rs6882716	0	6882716	Intergenic	1	NR	2E-6	5.698970004336018		    .53	 unit increase	Illumina [247,725]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Alcohol consumption (maxi-drinks)	272 Han Chinese ancestry individuals	NA	11q25	11	134396073	NR	B3GAT1			27087			rs7928758-?	rs7928758	0	7928758	intron	0	NR	3E-6	5.522878745280337		    .70	 unit decrease	Illumina [247,725]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Alcohol consumption (maxi-drinks)	272 Han Chinese ancestry individuals	NA	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-?	rs671	0	671	missense	0	NR	1E-16	16		    .16	 unit increase	Illumina [247,725]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Alcohol dependence	102 Han Chinese ancestry cases, 212 Han Chinese ancestry controls	NA	4q28.2	4	130091985	Intergenic	CYCSP14 - PGBD4P4	360170	100421146		       69.10	      402.69	rs11933661-?	rs11933661	0	11933661	Intergenic	1	NR	4E-6	5.397940008672037		    .54	 unit decrease	Illumina [247,725]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Alcohol dependence	102 Han Chinese ancestry cases, 212 Han Chinese ancestry controls	NA	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-?	rs671	0	671	missense	0	NR	5E-8	7.30102999566398		    .88	 unit increase	Illumina [247,725]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Response to alcohol consumption (flushing response)	108 Han Chinese ancestry cases, 190 Han Chinese ancestry controls	NA	14q24.2	14	71520348	Intergenic	SIPA1L1			26037			rs11158907-?	rs11158907	0	11158907	intron	0	NR	2E-6	5.698970004336018		    .56	 unit increase	Illumina [247,725]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Response to alcohol consumption (flushing response)	108 Han Chinese ancestry cases, 190 Han Chinese ancestry controls	NA	8q24.22	8	134866916	Intergenic	LOC101927845			101927845			rs4909801-?	rs4909801	0	4909801	intron	0	NR	3E-6	5.522878745280337		    .53	 unit increase	Illumina [247,725]	N
06/28/2014	24277619	Quillen EE	11/26/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural chinese sample.	Response to alcohol consumption (flushing response)	108 Han Chinese ancestry cases, 190 Han Chinese ancestry controls	NA	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-?	rs671	0	671	missense	0	NR	5E-26	25.30102999566398		   1.81	 unit decrease	Illumina [247,725]	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	12p13.33	12	2236129	CACNA1C	CACNA1C			775			rs1006737-?	rs1006737	0	1006737	intron	0	NR	6E-13	12.22184874961636	(SCZ and BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	6p22.1	6	27742386	MHC	TRNAI25			100189401			rs17693963-?	rs17693963	0	17693963		0	NR	3E-11	10.52287874528034	(SCZ and BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	3p22.2	3	36814539	TRANK1	HSPD1P6 - TRANK1	645548	9881		       45.65	       12.28	rs9834970-?	rs9834970	0	9834970	Intergenic	1	NR	1E-10	10	(SCZ and BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	7p22.3	7	1881190	MAD1L1	MAD1L1			8379			rs10275045-?	rs10275045	0	10275045	intron	0	NR	2E-9	8.698970004336019	(SCZ and BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	11p15.1	11	17138601	PIK3C2A	PIK3C2A			5286			rs4356203-?	rs4356203	0	4356203	intron	0	NR	6E-9	8.221848749616356	(SCZ and BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	1p31.1	1	78772330	IFI44L	RPL23P3 - ELTD1	100130630	64123		      105.63	      117.43	rs4650608-?	rs4650608	0	4650608	Intergenic	1	NR	8E-9	8.096910013008056	(SCZ and BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	17q21.32	17	48763179	NR	TTLL6			284076			rs7219021-?	rs7219021	0	7219021	intron	0	NR	1E-7	7	(SCZ vs. BP)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	12p13.33	12	2236129	CACNA1C	CACNA1C			775			rs1006737-?	rs1006737	0	1006737	intron	0	NR	7E-8	7.154901959985742	(BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	3p22.2	3	36814539	TRANK1	HSPD1P6 - TRANK1	645548	9881		       45.65	       12.28	rs9834970-?	rs9834970	0	9834970	Intergenic	1	NR	4E-7	6.397940008672037	(BP vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	12p13.33	12	2236129	CACNA1C	CACNA1C			775			rs1006737-?	rs1006737	0	1006737	intron	0	NR	2E-6	5.698970004336018	(SCZ vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	6p22.1	6	27742386	MHC	TRNAI25			100189401			rs17693963-?	rs17693963	0	17693963		0	NR	3E-9	8.522878745280337	(SCZ vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
06/28/2014	24280982	Ruderfer DM	11/26/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24280982	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	up to 2,461 European ancestry schizophrenia cases, up to 6,908 schizophrenia cases, up to 4,903 European ancestry bipolar disorder cases, up to 5,507 bipolar disorder cases, up to 7,213 European ancestry controls, up to 12,210 controls 	NA	7p22.3	7	1881190	MAD1L1	MAD1L1			8379			rs10275045-?	rs10275045	0	10275045	intron	0	NR	2E-6	5.698970004336018	(SCZ vs. controls)	NR	NR	Illumina and Affymetrix [~1.1 Million] (imputed)	N
07/25/2014	24280104	Wu AC	11/23/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24280104	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41	19	52104512	NR	ZNF841 - ZNF616	284371	90317		        8.75	        8.58	rs10411428-T	rs10411428	0	10411428	Intergenic	1	0.41	1E-9	8.999999999999998		NR	NR	Illumina [449,540]	N
07/25/2014	24280104	Wu AC	11/23/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24280104	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41	19	52098146	ZNF841	ZNF841 - ZNF616	284371	90317		        2.38	       14.95	rs11666341-A	rs11666341	0	11666341	Intergenic	1	0.45	1E-9	8.999999999999998		NR	NR	Illumina [449,540]	N
07/25/2014	24280104	Wu AC	11/23/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24280104	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41[rs12460587]; 19q13.41[rs3450]			ZNF841, ZNF432	 - 						rs12460587-G	rs12460587, rs3450, rs3752120					0.33	2E-9			NR	NR	Illumina [449,540]	N
07/25/2014	24280104	Wu AC	11/23/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24280104	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41	19	52029018	ZNF614	ZNF614			80110			rs2288884-T	rs2288884	0	2288884	nearGene-5	0	0.34	5E-8	7.30102999566398		NR	NR	Illumina [449,540]	N
07/25/2014	24280104	Wu AC	11/23/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/24280104	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	8q23.3	8	113873203	NR	RPL18P7 - TRPS1	100270945	7227		      495.91	     1535.29	rs6469488-G	rs6469488	0	6469488	Intergenic	1	0.07	7E-6	5.154901959985742		NR	NR	Illumina [449,540]	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	9p21.3	9	22125504	CDKN2BAS	UBA52P6 - DMRTA1	100130239	63951		      112.97	      321.34	rs1333049-C	rs1333049 	0	1333049	Intergenic	1	NR	3E-56	55.52287874528033		   1.24	[1.21-1.28] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6p24.1	6	12901209	PHACTR1	PHACTR1			221692			rs9369640-C	rs9369640 	0	9369640	intron	0	NR	3E-11	10.52287874528034		   1.10	[1.08-1.14] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	19p13.2	19	11052925	LDLR, SMARCA4	SMARCA4			6597			rs1122608-T	rs1122608 	0	1122608	intron	0	NR	3E-11	10.52287874528034		   1.14	[1.09-1.18] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	21q22.11	21	34226827	KCNE2	LINC00310 - KCNE2	114036	9992		       36.91	      137.20	rs9982601-T	rs9982601 	0	9982601	Intergenic	1	NR	3E-10	9.522878745280336		   1.18	[1.12-1.24] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	7q32.2	7	130023656	ZC3HC1	ZC3HC1			51530			rs11556924-T	rs11556924 	0	11556924	missense	0	NR	3E-10	9.522878745280336		   1.10	[1.06-1.12] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6q23.2	6	133893387	TCF21	TCF21			6943			rs12190287-G	rs12190287 	0	12190287	UTR-3	0	NR	2E-9	8.698970004336019		   1.11	[1.08-1.15] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	1p32.2	1	56497149	PPAP2B	PPAP2B			8613			rs17114036-G	rs17114036 	0	17114036	intron	0	NR	1E-8	8		   1.15	[1.1-1.22] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	1p13.3	1	109278889	SORT1	CELSR2 - PSRC1	1952	84722		        3.13	         .67	rs602633-T	rs602633 	0	602633	Intergenic	1	NR	1E-8	8		   1.11	[1.08-1.15] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	2q33.2	2	202881162	WDR12	WDR12			55759			rs6725887-C	rs6725887 	0	6725887	intron	0	NR	2E-8	7.698970004336018		   1.14	[1.10-1.19] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	15q25.1	15	78849442	ADAMTS7	ADAMTS7 - TRNAK6	11173	100189013		       37.98	       11.12	rs7173743-C	rs7173743 	0	7173743	Intergenic	1	NR	7E-8	7.154901959985742		   1.08	[1.05-1.11] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	3q22.3	3	138403280	MRAS	MRAS			22808			rs9818870-T	rs9818870 	0	9818870	UTR-3	0	NR	1E-7	7		   1.11	[1.07-1.15] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	17p13.3	17	2214651	SMG6	SMG6			23293			rs2281727-G	rs2281727 	0	2281727	intron	0	NR	1E-7	7		   1.07	[1.04-1.10] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	17p11.2	17	17640408	RAI1, PEMT, RASD1	EEF1A1P43 - RAI1	1918	10743		       54.26	       41.07	rs12936587-A	rs12936587 	0	12936587	Intergenic	1	NR	2E-7	6.698970004336019		   1.08	[1.04-1.11] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-C	rs579459 	0	579459	Intergenic	1	NR	2E-7	6.698970004336019		   1.10	[1.06-1.14] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	8p21.3	8	19955669	LPL	LPL			4023			rs264-A	rs264 	0	264	intron	0	NR	3E-7	6.522878745280337		   1.11	[1.06-1.15] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	11q23.3	11	116741017	ZNF259, APO5A, APOA1	RPL15P15 - BUD13	100128347	84811		      790.22	        7.15	rs9326246-C	rs9326246 	0	9326246	Intergenic	1	NR	3E-7	6.522878745280337		   1.15	[1.09-1.21] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504 	0	3184504	missense	0	NR	9E-7	6.045757490560675		   1.07	[1.04-1.11] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	4q31.22	4	147472512	EDNRA	PRMT5P1 - EDNRA	100420927	1909		       13.19	        8.41	rs1878406-T	rs1878406 	0	1878406	Intergenic	1	NR	1E-6	5.999999999999999		   1.10	[1.06-1.14] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	10q24.32	10	102959339	CYP17A1, CNNM2, NT5C2	CNNM2			54805			rs12413409-A	rs12413409 	0	12413409	intron	0	NR	1E-6	5.999999999999999		   1.12	[1.08-1.19] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6q25.3	6	160442500	SLC22A3, LPAL2, LPA	SLC22A3			6581			rs2048327-C	rs2048327 	0	2048327	intron	0	NR	1E-6	5.999999999999999		   1.07	[1.05-1.10] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	10q11.21	10	44258419	CXCL12	LINC00841 - CXCL12	283033	6387		      288.51	      111.73	rs501120-C	rs501120 	0	501120	Intergenic	1	NR	2E-6	5.698970004336018		   1.09	[1.05-1.14] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	13q34	13	110308365	COL4A1, COL4A2	COL4A1;COL4A2			1282;1284			rs4773144-G	rs4773144 	0	4773144	nearGene-5;intron	0	NR	2E-6	5.698970004336018		   1.08	[1.05-1.12] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	6p21.31	6	34930678	ANKS1A	ANKS1A			23294			rs12205331-T	rs12205331 	0	12205331	intron	0	NR	6E-6	5.221848749616356		   1.08	[1.04-1.11] 	Illumina [575,000] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	9p21.3	9	22125504	CDKN2BAS	UBA52P6 - DMRTA1	100130239	63951		      112.97	      321.34	rs1333049-?	rs1333049	0	1333049	Intergenic	1	NR	1E-56	56		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	12q24.12	12	111634620	SH2B3	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-?	rs11065987	0	11065987	Intergenic	1	NR	4E-14	13.39794000867204		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6q26	6	160589086	SLC22A3, LPAL2, LPA	LPA			4018			rs10455872-?	rs10455872	0	10455872	intron	0	NR	2E-12	11.69897000433602		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	19p13.2	19	11052925	LDLR, SMARCA4	SMARCA4			6597			rs1122608-?	rs1122608	0	1122608	intron	0	NR	3E-12	11.52287874528034		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6p24.1	6	12903203	PHACTR1	PHACTR1			221692			rs4714955-?	rs4714955	0	4714955	intron	0	NR	4E-11	10.39794000867204		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	7q32.2	7	130023656	ZC3HC1	ZC3HC1			51530			rs11556924-?	rs11556924	0	11556924	missense	0	NR	9E-10	9.045757490560675		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	11q23.3	11	116778201	ZNF259	ZPR1			8882			rs964184-?	rs964184	0	964184	intron	0	NR	2E-5	4.698970004336019		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-?	rs579459	0	579459	Intergenic	1	NR	2E-9	8.698970004336019		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	15q25.1	15	78737381	ADAMTS7	DNM1P37			100216516			rs2219939-?	rs2219939	0	2219939		0	NR	2E-9	8.698970004336019		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	2q33.2	2	202888349	WDR12	WDR12			55759			rs7582720-?	rs7582720	0	7582720	intron	0	NR	4E-9	8.397940008672036		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	1p13.3	1	109279544	SORT1	PSRC1			84722			rs599839-?	rs599839	0	599839	nearGene-3	0	NR	1E-8	8		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6q23.2	6	133893387	TCF21	TCF21			6943			rs12190287-?	rs12190287	0	12190287	UTR-3	0	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	17p11.2	17	17641390	RAI1, PEMT, RASD1	EEF1A1P43 - RAI1	1918	10743		       55.24	       40.08	rs12449964-?	rs12449964	0	12449964	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	1p32.2	1	56497149	PPAP2B	PPAP2B			8613			rs17114036-?	rs17114036	0	17114036	intron	0	NR	3E-8	7.522878745280337		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	6q13	6	71484004	C6orf155	LINC00472 - KRT19P1	79940	441160		       63.26	      100.66	rs9351814-?	rs9351814	0	9351814	Intergenic	1	NR	5E-8	7.30102999566398		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	9p21.3	9	22125504	CDKN2BAS	UBA52P6 - DMRTA1	100130239	63951		      112.97	      321.34	rs1333049-?	rs1333049	0	1333049	Intergenic	1	NR	1E-59	59		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	6q26	6	160589086	SLC22A3, LPAL2, LPA	LPA			4018			rs10455872-?	rs10455872	0	10455872	intron	0	NR	9E-14	13.04575749056067		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	7p21.1	7	19009765	HDAC9	TWIST1			7291			rs2107595-?	rs2107595	0	2107595	intron	0	NR	3E-12	11.52287874528034		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	19p13.2	19	11052925	LDLR, SMARCA4	SMARCA4			6597			rs1122608-?	rs1122608	0	1122608	intron	0	NR	2E-11	10.69897000433602		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	6p24.1	6	12903203	PHACTR1	PHACTR1			221692			rs4714955-?	rs4714955	0	4714955	intron	0	NR	2E-11	10.69897000433602		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	17p11.2	17	17640408	RAI1, PEMT, RASD1	EEF1A1P43 - RAI1	1918	10743		       54.26	       41.07	rs12936587-?	rs12936587	0	12936587	Intergenic	1	NR	2E-10	9.698970004336017		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	12q24.12	12	111634620	SH2B3	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-?	rs11065987	0	11065987	Intergenic	1	NR	3E-10	9.522878745280336		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	7q32.2	7	130023656	ZC3HC1	ZC3HC1			51530			rs11556924-?	rs11556924	0	11556924	missense	0	NR	8E-10	9.096910013008054		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	1p13.3	1	109279544	SORT1	PSRC1			84722			rs599839-?	rs599839	0	599839	nearGene-3	0	NR	8E-17	16.09691001300806		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	11q23.3	11	116778201	ZNF259	ZPR1			8882			rs964184-?	rs964184	0	964184	intron	0	NR	9E-10	9.045757490560675		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	6q23.2	6	133893387	TCF21	TCF21			6943			rs12190287-?	rs12190287	0	12190287	UTR-3	0	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	10q24.32	10	102959339	YP17A1, CNNM2, NT5C2	CNNM2			54805			rs12413409-?	rs12413409	0	12413409	intron	0	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	4q31.22	4	147480038	EDNRA	EDNRA			1909			rs6841581-?	rs6841581	0	6841581	nearGene-5	0	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	1p32.2	1	56497149	PPAP2B	PPAP2B			8613			rs17114036-?	rs17114036	0	17114036	intron	0	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	15q25.1	15	78727236	ADAMTS7	RPL18P11 - DNM1P37	390612	100216516		       65.60	        9.90	rs899997-?	rs899997	0	899997	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	2q33.2	2	202888349	WDR12	WDR12			55759			rs7582720-?	rs7582720	0	7582720	intron	0	NR	3E-8	7.522878745280337		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-?	rs579459	0	579459	Intergenic	1	NR	3E-8	7.522878745280337		NR	NR	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	1p36.23	1	8035440	ERRFI1	ERRFI1 - RPL7AP18	54206	390993		        9.11	       21.74	rs225132-G	rs225132	0	225132	Intergenic	1	NR	6E-8	7.221848749616355		   1.12	[1.08-1.16] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	3q23	3	141080371	SPSB4	SPSB4			92369			rs16851055-A	rs16851055	0	16851055	intron	0	NR	7E-7	6.154901959985743		   1.11	[1.06-1.16] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	1p36.23	1	7982766	PARK7	PARK7			11315			rs161802-T	rs161802	0	161802	intron	0	NR	2E-7	6.698970004336019		   1.11	[1.08-1.16] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	17p12	17	11482573	FLJ45455	SHISA6			388336			rs4792143-T	rs4792143	0	4792143	intron	0	NR	5E-6	5.301029995663981		   1.10	[1.05-1.15] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	12q24.13	12	112049014	SH2B3	NAA25			80018			rs17696736-G	rs17696736	0	17696736	intron	0	NR	6E-8	7.221848749616355		   1.10	[1.06-1.14] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	4q25	4	110778170	PITX2	PITX2 - MIR297	5308	100126354		      136.05	       82.41	rs12646447-C	rs12646447	0	12646447	Intergenic	1	NR	3E-8	7.522878745280337		   1.14	[1.09-1.20] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	7p21.1	7	19009765	HDAC9	TWIST1			7291			rs2107595-A	rs2107595	0	2107595	intron	0	NR	3E-12	11.52287874528034		   1.39	[1.27-1.52] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	11q22.3	11	107483586	ALKBH8	SMARCE1P1 - ALKBH8	100271884	91801		       78.95	       19.14	rs7937106-C	rs7937106	0	7937106	Intergenic	1	NR	6E-8	7.221848749616355		   1.69	[1.40-2.04] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	5q21.1	5	99544595	Intergenic	CTD-2151A2.1			102724855			rs17167021-G	rs17167021	0	17167021	intron	0	NR	1E-7	7		   1.81	[1.42-2.30] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	14q24.3	14	75707517	TTLL5	TTLL5			23093			rs1005224-T	rs1005224	0	1005224	intron	0	NR	1E-7	7		   1.20	[1.11-1.3] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	9p21.3	9	22124505	Intergenic	UBA52P6 - DMRTA1	100130239	63951		      111.97	      322.34	rs1333047-T	rs1333047	0	1333047	Intergenic	1	NR	2E-7	6.698970004336019		   1.20	[1.11-1.29] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	6p21.1	6	44628604	SUPT3H	TRNAI25			100189401			rs632728-T	rs632728	0	632728		0	NR	2E-7	6.698970004336019		   1.19	[1.11-1.28] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	14q24.3	14	77135476	ZDHHC22	ZDHHC22			283576			rs1465330-A	rs1465330	0	1465330	intron	0	NR	4E-7	6.397940008672037		   1.19	[1.1-1.28] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	13q31.1	13	78664790	RNF219	RNF219 - RPL21P111	79596	100271439		        5.61	       96.34	rs4304924-G	rs4304924	0	4304924	Intergenic	1	NR	5E-6	5.301029995663981		   1.18	[1.1-1.27] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24262325	Dichgans M	11/21/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/24262325	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	2q21.3	2	134456999	TMEM163	TMEM163			81615			rs10179686-T	rs10179686	0	10179686	intron	0	NR	8E-6	5.096910013008055		   1.69	[1.34-2.13] 	Illumina and Affymetrix [~2.4 Million] (imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p14.1	3	66429063	LRIG1	LRIG1			26018			rs13078828-?	rs13078828	0	13078828	intron	0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q24	3	146691396	NR	PLSCR5 - RPL21P71	389158	729962		       85.18	      585.33	rs114774257-?	rs114774257	0	114774257	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p16.3	4	2291194	NR	ZFYVE28			57732			rs4602560-?	rs4602560	0	4602560	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.2	5	125968854	NR	RPSAP37 - GRAMD3	100270915	65983		        1.35	      391.24	rs1910003-?	rs1910003	0	1910003	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p25.1	6	6169657	NR	F13A1;MIR5683;MIR7853			2162;100847034;102466866			rs6934608-?	rs6934608	0	6934608	intron;nearGene-3;nearGene-5	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9p23	9	9015087	NR	PTPRD			5789			rs78925264-?	rs78925264	0	78925264	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q21.1	10	57215048	NR	ZWINT - MIR3924	11130	100500834		      853.75	       89.43	rs11005694-?	rs11005694	0	11005694	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q22.3	11	110061343	NR	RPSAP50 - ZC3H12C	644109	85463		       78.33	       31.60	rs17110679-?	rs17110679	0	17110679	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q14.2	12	64333676	NR	C12orf56			115749			rs7487873-?	rs7487873	0	7487873	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q21.33	12	91981819	NR	DCN - C12orf79	1634	256021		      798.79	        3.16	rs12146838-?	rs12146838	0	12146838	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q14.3	13	52035072	NR	UTP14C - NEK5	9724	341676		        1.47	       29.69	rs12430077-?	rs12430077	0	12430077	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q21.33	13	70675397	NR	ATXN8OS - MTCL1P1	6315	100288130		      535.64	      248.26	rs186967887-?	rs186967887	0	186967887	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q24.2	14	72345817	NR	RGS6			9628			rs2681735-?	rs2681735	0	2681735	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q24.2	15	75578210	NR	PTPN9			5780			rs75393192-?	rs75393192	0	75393192	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q23	15	71316280	NR	THSD4			79875			rs17786786-?	rs17786786	0	17786786	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q12.1	18	33666280	NR	ASXL3			80816			rs55916387-?	rs55916387	0	55916387	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19q12	19	30064044	NR	TAF9P3 - ZNF536	163088	9745		       25.65	      308.34	rs6509942-?	rs6509942	0	6509942	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.2	19	12926920	NR	FARSA			2193			rs62109865-?	rs62109865	0	62109865	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	20q11.23	20	38196318	NR	TGM2 - KIAA1755	7052	85449		       31.02	       14.19	rs75727053-?	rs75727053	0	75727053	Intergenic	1	NR	1E-8	8		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	22q11.21	22	21076765	NR	TUBA3GP - BCRP2	645348	400892		        6.59	       26.25	rs400946-?	rs400946	0	400946	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	1p36.21	1	14466039	NR	KAZN			23254			rs2480054-?	rs2480054	0	2480054	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	3p13	3	69774942	NR	MITF			4286			rs78356356-?	rs78356356	0	78356356	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.31	6	33566949	NR	TRNAI25			100189401			rs6910233-?	rs6910233	0	6910233		0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.31	6	34614497	C6orf106	C6orf106			64771			rs182503338-?	rs182503338	0	182503338	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.2	6	40360639	NR	LOC101929515			101929515			rs2038868-?	rs2038868	0	2038868	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	6p21.1	6	44204326	NR	TRNAI25			100189401			rs35131064-?	rs35131064	0	35131064		0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	8p22	8	17604713	NR	PDGFRL			5157			rs7829987-?	rs7829987	0	7829987	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	8p12	8	32460839	NR	NRG1			3084			rs12542743-?	rs12542743	0	12542743	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	11p15.4	11	7374960	SYT9	SYT9			143425			rs10769783-?	rs10769783	0	10769783	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	12p12.3	12	18871624	NR	CAPZA3 - RPL7P6	93661	90193		      132.44	      217.51	rs12319113-?	rs12319113	0	12319113	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	12p12.2	12	21138627	SLCO1B1	SLCO1B1			10599			rs4149018-?	rs4149018	0	4149018	intron	0	NR	1E-7	7		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	14q11.2	14	21728267	NR	TRA			6955			rs10132760-?	rs10132760	0	10132760		0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	14q23.3	14	64852643	NR	SPTB			6710			rs35955841-?	rs35955841	0	35955841	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	15q14	15	38142690	NR	TMCO5A - SPRED1	145942	161742		      191.27	      110.03	rs10468092-?	rs10468092	0	10468092	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	15q15.1	15	42142639	NR	PLA2G4F			255189			rs1356410-?	rs1356410	0	1356410	missense	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	19p12	19	21952468	NR	BNIP3P27 - ZNF208	100421708	7757		      125.19	       13.63	rs2262909-?	rs2262909	0	2262909	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	21q22.11	21	31512535	NR	TIAM1			7074			rs73199525-?	rs73199525	0	73199525	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	22q12.3	22	34748420	NR	LARGE-AS1 - ISX	100506195	91464		      997.60	      317.72	rs4493363-?	rs4493363	0	4493363	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q25.3	1	185715491	NR	GS1-204I12.1 - HMCN1	101929093	83872		       86.99	       19.06	rs74133262-?	rs74133262	0	74133262	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p34.2	1	40417423	NR	SMAP2			64744			rs2235701-?	rs2235701	0	2235701	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4q24	4	100980253	NR	LINC01216 - PPP3CA	100874275	5530		      305.14	       43.18	rs72927357-?	rs72927357	0	72927357	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q11.2	5	58184866	NR	PGAM1P1 - PLK2	100130514	10769		       23.12	      269.12	rs2964186-?	rs2964186	0	2964186	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q12.1	5	62945099	NR	ISCA1P1 - HTR1A	389293	3350		      167.76	     1014.95	rs112730887-?	rs112730887	0	112730887	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q23.3	6	137941636	NR	TNFAIP3 - RPSAP42	7128	100270919		       58.32	       53.63	rs17781283-?	rs17781283	0	17781283	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p22.3	6	16699829	NR	ATXN1			6310			rs73725220-?	rs73725220	0	73725220	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p22.1	7	6734504	NR	PMS2CL			441194			rs60111824-?	rs60111824	0	60111824	nearGene-5	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p12.1	7	51547455	NR	CICP17 - POM121L12	642663	285877		      162.80	     1488.20	rs35205176-?	rs35205176	0	35205176	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.13	7	91314953	NR	FZD1 - NIPA2P1	8321	100132321		       46.14	        5.05	rs1429524-?	rs1429524	0	1429524	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.32	7	122701095	NR	CADPS2;RNF133			93664;168433			rs6466832-?	rs6466832	0	6466832	intron;nearGene-5	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q34	7	142490201	NR	TRB			6957			rs11982969-?	rs11982969	0	11982969		0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p23.1	8	11801600	FDFT1	FDFT1			2222			rs2645430-?	rs2645430	0	2645430	intron	0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8q21.3	8	90558134	NR	RNA5SP273 - LINC01030	100873526	101937451		       46.89	       34.64	rs1018836-?	rs1018836	0	1018836	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9p21.3	9	25192575	NR	IZUMO3 - TUSC1	100129669	286319		      646.68	      483.81	rs181881383-?	rs181881383	0	181881383	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p15.3	10	1410591	NR	ADARB2			105			rs17293817-?	rs17293817	0	17293817	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p12.1	10	25302224	NR	GPR158			57512			rs59132240-?	rs59132240	0	59132240	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q24.31	10	101004290	LZTS2	LZTS2			84445			rs807029-?	rs807029	0	807029	intron	0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q22.3	11	105642334	NR	GRIA4			2893			rs3170-?	rs3170	0	3170	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q14.11	13	42037531	NR	RPS28P8 - DGKH	100271381	160851		       33.90	        2.51	rs9525562-?	rs9525562	0	9525562	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q22.1	14	52397519	NR	PTGER2 - TXNDC16	5732	57544		       68.91	       33.07	rs6572843-?	rs6572843	0	6572843	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p12.1	16	24868642	NR	SLC5A11			115584			rs12926788-?	rs12926788	0	12926788	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.31	18	3814148	NR	DLGAP1			9229			rs3786431-?	rs3786431	0	3786431	cds-synon	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	19	2714172	NR	DIRAS1			148252			rs185543003-?	rs185543003	0	185543003	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	19	2547017	NR	GNG7			2788			rs6510683-?	rs6510683	0	6510683	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p36.23	1	7661300	NR	CAMTA1			23261			rs3011925-?	rs3011925	0	3011925	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p36.12	1	22411453	NR	MIR4418 - ZBTB40	100616433	9923		      145.15	       40.40	rs111724808-?	rs111724808	0	111724808	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p32.3	1	53418785	NR	LOC102724125			102724125			rs1776421-?	rs1776421	0	1776421	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p32.3	1	53978192	NR	HNRNPA3P12 - LDLRAD1	100421395	388633		        2.16	       29.11	rs114147144-?	rs114147144	0	114147144	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p32.2	1	57190938	NR	DAB1			1600			rs1394397-?	rs1394397	0	1394397	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p21.3	1	98006146	NR	MIR137HG			400765			rs77177281-?	rs77177281	0	77177281	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q21.1	1	147507700	NR	LINC00624			100289211			rs631288-?	rs631288	0	631288	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p24.3	2	16051423	NR	MYCN - FAM49A	4613	81553		      104.42	      498.04	rs55678912-?	rs55678912	0	55678912	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p14	2	68158894	NR	PNO1;WDR92			56902;116143			rs78556816-?	rs78556816	0	78556816	intron;nearGene-5	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p13.2	2	71460988	DYSF	DYSF			8291			rs56988800-?	rs56988800	0	56988800	intron	0	NR	1E-7	7		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2q24.1	2	155723148	NR	MTND5P30 - NR4A2	100873266	4929		      409.72	      601.28	rs4664774-?	rs4664774	0	4664774	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2q35	2	215064402	NR	ABCA12			26154			rs10210200-?	rs10210200	0	10210200	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.3	3	1088135	CNTN6	RPSAP32 - CNTN6	402123	27255		      469.78	        4.52	rs76090503-?	rs76090503	0	76090503	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p12.1	3	86495236	NR	LOC101927494			101927494			rs188655146-?	rs188655146	0	188655146	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q21.2	3	124105614	NR	KALRN			8997			rs13067260-?	rs13067260	0	13067260	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q21.3	3	126182110	NR	ALDH1L1;ALDH1L1-AS2			10840;100862662			rs114542799-?	rs114542799	0	114542799	nearGene-5;intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q22.3	3	138378692	NR	MRAS			22808			rs1678443-?	rs1678443	0	1678443	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q23	3	139522529	NR	RBP1;LOC100507291			5947;100507291			rs295490-?	rs295490	0	295490	intron;intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q23	3	142816424	NR	TRPC1 - PCOLCE2	7220	26577		        8.54	        1.44	rs116465281-?	rs116465281	0	116465281	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q24	3	144711980	NR	RNA5SP144 - LARP7P4	100873411	100421509		      524.96	      811.55	rs183670238-?	rs183670238	0	183670238	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q26.2	3	168534516	NR	EGFEM1P			93556			rs6782264-?	rs6782264	0	6782264	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q26.32	3	179265272	NR	KCNMB3;LOC101929571			27094;101929571			rs115965187-?	rs115965187	0	115965187	intron;nearGene-5	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p15.32	4	15352761	C1QTNF7	C1QTNF7			114905			rs114133078-?	rs114133078	0	114133078	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4q28.3	4	137169858	NR	TERF1P3 - SERF1AP1	646316	100131921		      813.52	      131.15	rs75900745-?	rs75900745	0	75900745	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5p15.31	5	9619752	NR	SNORD123 - TAS2R1	100113384	50834		       70.84	        9.25	rs77202753-?	rs77202753	0	77202753	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5p15.2	5	11366045	NR	CTNND2			1501			rs20476-?	rs20476	0	20476	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5p13.2	5	36436477	NR	RANBP3L - RNA5SP181	202151	100873443		      134.57	       48.87	rs114846327-?	rs114846327	0	114846327	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q13.3	5	76353455	NR	SV2C			22987			rs73117804-?	rs73117804	0	73117804	UTR-3	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q15	5	97613369	NR	LOC102546227			102546227			rs55988457-?	rs55988457	0	55988457	intron	0	NR	6E-8	7.221848749616355		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.1	5	120343753	NR	FAM170A - PRR16	340069	51334		      707.93	      120.53	rs78979090-?	rs78979090	0	78979090	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.3	5	128540043	NR	FBN2 - SLC27A6	2201	28965		        2.00	      425.22	rs186263310-?	rs186263310	0	186263310	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q31.1	5	132143804	NR	CSF2 - P4HA2-AS1	1437	100861518		       67.63	       41.07	rs115545556-?	rs115545556	0	115545556	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q31.3	5	142544830	NR	SPRY4 - RPS12P10	81848	100271056		      219.78	       21.87	rs152439-?	rs152439	0	152439	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q33.1	5	153124378	NR	TRNAC32P - GRIA1	100189508	2890		      515.17	      366.15	rs57917647-?	rs57917647	0	57917647	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q33.3	5	158391732	NR	LOC101927697			101927697			rs74620148-?	rs74620148	0	74620148	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p22.1	6	27443950	NR	TRNAI25			100189401			rs76439045-?	rs76439045	0	76439045		0	NR	5E-8	7.30102999566398		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.1	6	43225580	NR	DNPH1			10591			rs115842765-?	rs115842765	0	115842765	nearGene-3	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.1	6	43481492	TJAP1	TJAP1			93643			rs61018535-?	rs61018535	0	61018535	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.1	6	44487396	NR	TRNAI25			100189401			rs116755262-?	rs116755262	0	116755262		0	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q15	6	87322672	NR	SMIM8;GJB7			57150;375519			rs7341237-?	rs7341237	0	7341237	intron;intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.3	7	9510942	NR	RPL9P19 - GAPDHP68	100129634	100132601		      571.49	      103.97	rs12702919-?	rs12702919	0	12702919	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.2	7	14189078	NR	DGKB			1607			rs2068399-?	rs2068399	0	2068399	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.1	7	18683609	NR	HDAC9			9734			rs73313346-?	rs73313346	0	73313346	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.1	7	20642227	ABCB5	ABCB5			340273			rs73276602-?	rs73276602	0	73276602	intron	0	NR	1E-7	7		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p14.1	7	41235906	NR	SUGCT - INHBA	79783	3624		      375.14	      453.10	rs12019358-?	rs12019358	0	12019358	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p11.2	7	56071812	NR	SUMF2			25870			rs7806994-?	rs7806994	0	7806994	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.11	7	78209193	NR	MAGI2			9863			rs113527903-?	rs113527903	0	113527903	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.12	7	87745553	RUNDC3B	RUNDC3B			154661			rs114137957-?	rs114137957	0	114137957	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.3	7	94250781	NR	BET1 - COL1A2	10282	1278		      246.40	      143.78	rs2110483-?	rs2110483	0	2110483	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.3	7	94432092	COL1A2	COL1A2 - CASD1	1278	64921		         .86	       77.43	rs115744676-?	rs115744676	0	115744676	Intergenic	1	NR	7E-9	8.154901959985743		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q22.1	7	101486484	NR	COL26A1			136227			rs73712171-?	rs73712171	0	73712171	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.1	7	110700918	NR	IMMP2L			83943			rs17157913-?	rs17157913	0	17157913	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.1	7	111811603	NR	DOCK4;DOCK4-AS1			9732;100506413			rs2074114-?	rs2074114	0	2074114	intron;intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.2	7	115274554	NR	RAC1P6 - TFEC	100422657	22797		      137.39	      660.59	rs10274759-?	rs10274759	0	10274759	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.2	7	116565860	NR	CAV1 - MET	857	4233		        4.68	      106.50	rs7802124-?	rs7802124	0	7802124	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.33	7	127284650	NR	MIR592 - ZNF800	693177	168850		      226.47	       62.53	rs17869724-?	rs17869724	0	17869724	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8q23.1	8	109232394	NR	TRHR - NUDCD1	7201	84955		      112.81	        8.53	rs79076257-?	rs79076257	0	79076257	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p12	8	29224768	KIF13B	KIF13B			23303			rs75609241-?	rs75609241	0	75609241	intron	0	NR	5E-7	6.30102999566398		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9q21.31	9	79548398	NR	CHCHD2P9 - TLE4	645345	7091		      156.36	       23.38	rs11138290-?	rs11138290	0	11138290	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9q21.31	9	78753738	NR	MTND2P8 - KRT18P24	100873178	340460		       10.99	      282.62	rs117347249-?	rs117347249	0	117347249	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9q22.33	9	99463262	NR	NAMA - NR4A3	100996569	8013		       88.01	      358.59	rs35775808-?	rs35775808	0	35775808	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p11.21	10	35629304	NR	GJD4 - FZD8	219770	8325		       20.37	        8.95	rs114088342-?	rs114088342	0	114088342	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p15.3	10	2734506	NR	LINC00701 - PFKP	399708	5214		      419.43	      332.97	rs79619559-?	rs79619559	0	79619559	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q22.1	10	69989919	NR	COL13A1 - H2AFY2	1305	55506		       30.77	       62.68	rs113808744-?	rs113808744	0	113808744	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p15.1	11	21483354	NR	NELL1			4745			rs73469144-?	rs73469144	0	73469144	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q13.3	11	70212313	NR	FADD - PPFIA1	8772	8500		        4.91	       58.37	rs78972067-?	rs78972067	0	78972067	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p12	11	40855036	NR	LRRC4C			57689			rs78015633-?	rs78015633	0	78015633	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	12	16366329	NR	MGST1			4257			rs9332958-?	rs9332958	0	9332958	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q12	12	42329106	NR	PPHLN1			51535			rs116975820-?	rs116975820	0	116975820	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q24.13	12	113499191	NR	LHX5 - LINC01234	64211	100506465		       27.12	      245.39	rs76270203-?	rs76270203	0	76270203	Intergenic	1	NR	9E-7	6.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q24.23	12	119182192	HSPB8	HSPB8			26353			rs78852656-?	rs78852656	0	78852656	intron	0	NR	4E-8	7.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q33.1	13	104097486	NR	ATP6V1G1P7 - RPL7P45	100874514	100271225		      651.92	      716.83	rs149773673-?	rs149773673	0	149773673	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q13.3	15	31694040	NR	OTUD7A			161725			rs192142097-?	rs192142097	0	192142097	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p13.13	16	10499346	NR	ATF7IP2 - EMP2	80063	2013		       15.71	       29.08	rs184822539-?	rs184822539	0	184822539	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17p13.3	17	2882601	RAP1GAP2	RAP1GAP2			23108			rs59403466-?	rs59403466	0	59403466	intron	0	NR	6E-7	6.221848749616355		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q12	17	33979404	ACCN1	ASIC2			40			rs117364231-?	rs117364231	0	117364231	intron	0	NR	1E-7	7		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q21.1	17	40236899	WIPF2	WIPF2			147179			rs75041531-?	rs75041531	0	75041531	intron	0	NR	9E-7	6.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q21.2	17	41797709	LEPREL4	JUP - LEPREL4	3728	10609		       11.00	        4.24	rs191392302-?	rs191392302	0	191392302	Intergenic	1	NR	3E-8	7.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q23.3	17	64510162	NR	CEP95			90799			rs57166100-?	rs57166100	0	57166100	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q24.2	17	68629653	NR	LOC101928104			101928104			rs77325336-?	rs77325336	0	77325336	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	807367	YES1	YES1			7525			rs11664027-?	rs11664027	0	11664027	intron	0	NR	3E-7	6.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	1366300	NR	LINC00470 - METTL4	56651	64863		        6.67	     1171.23	rs1146075-?	rs1146075	0	1146075	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	1818384	NR	LINC00470 - METTL4	56651	64863		      458.76	      719.14	rs2345595-?	rs2345595	0	2345595	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	1977712	NR	LINC00470 - METTL4	56651	64863		      618.08	      559.81	rs6505987-?	rs6505987	0	6505987	Intergenic	1	NR	3E-8	7.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	2452178	NR	LINC00470 - METTL4	56651	64863		     1092.55	       85.35	rs3914785-?	rs3914785	0	3914785	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	2614476	NR	NDC80			10403			rs182046301-?	rs182046301	0	182046301	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.31	18	2967847	NR	LPIN2			9663			rs8087073-?	rs8087073	0	8087073	intron	0	NR	1E-9	8.999999999999998		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.31	18	3465134	NR	LOC100505592			100505592			rs58882377-?	rs58882377	0	58882377	nearGene-5	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.23	18	8479687	NR	RFWD2P1 - THEMIS3P	729391	100420484		       65.06	       33.14	rs12185468-?	rs12185468	0	12185468	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q21.33	18	63478474	NR	SERPINB5			5268			rs79285331-?	rs79285331	0	79285331	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q22.1	18	67032737	NR	CDH19 - MIR5011	28513	100847002		      428.60	       48.85	rs73963343-?	rs73963343	0	73963343	Intergenic	1	NR	9E-8	7.045757490560674		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	19	1205890	NR	STK11			6794			rs147615524-?	rs147615524	0	147615524	UTR-5	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	19	4883729	NR	PLIN3 - ARRDC5	10226	645432		       15.96	        6.71	rs35967093-?	rs35967093	0	35967093	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	20p11.21	20	23051019	THBD	THBD			7056			rs3176130-?	rs3176130	0	3176130	nearGene-5	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	21q22.11	21	30931947	NR	KRTAP11-1 - KRTAP19-8	337880	728299		       50.39	      106.21	rs8134605-?	rs8134605	0	8134605	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	22q11.21	22	21693680	NR	PPIL2			23759			rs79384503-?	rs79384503	0	79384503	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.3	3	1259446	NR	CNTN6			27255			rs9815195-?	rs9815195	0	9815195	intron	0	NR	7E-7	6.154901959985743		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p24.2	3	25139539	NR	RNA5SP125 - CFL1P7	100873395	100505919		      114.41	      184.58	rs9840225-?	rs9840225	0	9840225	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q15	6	88173605	NR	CNR1 - RPS14P9	1268	644119		        6.92	       91.57	rs9450906-?	rs9450906	0	9450906	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.12	7	87913722	NR	DBF4 - ADAM22	10926	53616		        4.18	       20.53	rs6966264-?	rs6966264	0	6966264	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q21.31	17	42967552	NR	PTGES3L-AARSD1			100885850			rs188757965-?	rs188757965	0	188757965	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	2865507	NR	EMILIN2			84034			rs28877609-?	rs28877609	0	28877609	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q21.3	1	152914398	NR	IVL - SPRR4	3713	163778		        2.51	       56.25	rs34599045-?	rs34599045	0	34599045	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q23.3	1	161983610	NR	OLFML2B			25903			rs12039519-?	rs12039519	0	12039519	UTR-3	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p21	2	47254502	NR	LOC101927043			101927043			rs10190105-?	rs10190105	0	10190105	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p24.2	3	24071761	NR	NR1D2 - NPM1P23	9975	100422256		       91.14	       24.86	rs6800768-?	rs6800768	0	6800768	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q13.31	3	117308665	NR	PTMAP8 - IGSF11	728873	152404		      281.63	     1591.97	rs7632070-?	rs7632070	0	7632070	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4q23	4	99374083	NR	ADH1C - ADH7	126	131		       21.32	       38.18	rs56279505-?	rs56279505	0	56279505	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p16.1	4	8641359	NR	CPZ - HMX1	8532	3166		       21.60	      204.72	rs12510524-?	rs12510524	0	12510524	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p15.32	4	17681211	NR	FAM184B			27146			rs1008375-?	rs1008375	0	1008375	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p24.3	6	8169567	NR	SCARNA27 - SLC35B3	100124533	51000		       83.03	      243.50	rs11964561-?	rs11964561	0	11964561	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q14.1	6	77388936	NR	IMPG1 - HTR1B	3617	3351		     1316.26	       73.30	rs1936166-?	rs1936166	0	1936166	Intergenic	1	NR	9E-7	6.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6q14.1	6	79403878	NR	HMGN3-AS1 - DBIP1	100288198	1624		      167.08	       32.81	rs196670-?	rs196670	0	196670	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q11.22	7	68126052	NR	STAG3L4 - MTND4P3	64940	100873189		      804.53	      140.27	rs77689838-?	rs77689838	0	77689838	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p23.2	8	3886182	NR	CSMD1			64478			rs10113221-?	rs10113221	0	10113221	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8p21.3	8	23081148	NR	LOC286059			286059			rs57302454-?	rs57302454	0	57302454	intron	0	NR	6E-7	6.221848749616355		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	8q24.12	8	120206362	COL14A1	COL14A1			7373			rs10955961-?	rs10955961	0	10955961	intron	0	NR	3E-7	6.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p13	10	13646798	NR	FRMD4A;LOC101928524			55691;101928524			rs56161216-?	rs56161216	0	56161216	UTR-3;nearGene-5	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q21.3	10	68183877	NR	MYPN			84665			rs58180147-?	rs58180147	0	58180147	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q24.2	11	124951679	CCDC15	HEPN1 - CCDC15	641654	80071		       31.00	        2.44	rs4408325-?	rs4408325	0	4408325	Intergenic	1	NR	1E-7	7		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q21.1	14	38443191	NR	CLEC14A - KRT8P1	161198	338017		      186.82	      283.77	rs34310550-?	rs34310550	0	34310550	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p12.1	16	25933223	NR	HS3ST4			9951			rs117559033-?	rs117559033	0	117559033	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q12.2	18	35376967	ZNF396	ZNF396			252884			rs116303449-?	rs116303449	0	116303449	intron	0	NR	6E-7	6.221848749616355		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	21q21.3	21	25457465	NR	LINC00158 - MIR155HG	54072	114614		       25.76	      104.68	rs12483240-?	rs12483240	0	12483240	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	22q12.3	22	37190752	NR	C1QTNF6			114904			rs2160908-?	rs2160908	0	2160908	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	21q22.11	21	31841738	NR	TPT1P1 - HUNK	100131268	30811		         .68	       31.58	rs77292666-?	rs77292666	0	77292666	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p36.13	1	19022787	NR	IFFO2 - UBR4	126917	23352		       66.46	       51.72	rs28829049-?	rs28829049	0	28829049	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p21.3	1	94564025	NR	F3 - KATNBL1P2	2152	100130235		       22.17	       86.53	rs1146509-?	rs1146509	0	1146509	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p21.1	1	102737551	NR	DNAJA1P5 - COL11A1	94236	1301		      842.81	      138.92	rs1376359-?	rs1376359	0	1376359	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q24.1	1	167077218	NR	GPA33			10223			rs73028893-?	rs73028893	0	73028893	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p22.1	2	40257805	NR	SLC8A1			6546			rs3749056-?	rs3749056	0	3749056	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.1	3	6520644	NR	MRPS35P1 - MRPS36P1	339910	347705		     1073.54	      252.39	rs155206-?	rs155206	0	155206	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p24.3	3	21405844	NR	VENTXP7			391518			rs409974-?	rs409974	0	409974	ncRNA	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q23	3	142610077	NR	PLS1			5357			rs9826463-?	rs9826463	0	9826463	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p15.2	4	24776658	NR	ATP5LP3 - SOD3	53409	6649		      118.24	       18.81	rs78792420-?	rs78792420	0	78792420	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	5q23.1	5	121570787	NR	PRR16 - RPL23AP44	51334	391825		      883.47	        5.06	rs12109307-?	rs12109307	0	12109307	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p21.31	6	34614497	C6orf1	C6orf106			64771			rs182503338-?	rs182503338	0	182503338	intron	0	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q21.3	7	96070696	NR	DYNC1I1			1780			rs77909595-?	rs77909595	0	77909595	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p21.3	7	9283590	NR	RPL9P19 - GAPDHP68	100129634	100132601		      344.14	      331.32	rs1919796-?	rs1919796	0	1919796	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7p12.3	7	45361296	NR	RAMP3 - ELK1P1	10268	647102		      177.05	       30.18	rs1852612-?	rs1852612	0	1852612	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	9p23	9	10054522	NR	PTPRD			5789			rs447578-?	rs447578	0	447578	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p12.31	10	20573472	NR	MIR4675 - NEBL	100616383	10529		       21.43	      206.50	rs11012167-?	rs11012167	0	11012167	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p12.1	10	25481096	GPR158	GPR158			57512			rs72786268-?	rs72786268	0	72786268	intron	0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q11.23	10	50500034	NR	SGMS1			259230			rs12251514-?	rs12251514	0	12251514	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p15.4	11	5534825	NR	OR52V1P - OR52H1	81242	390067		        6.70	        9.74	rs79243044-?	rs79243044	1	7125848	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p15.4	11	7374960	SYT9	SYT9			143425			rs10769783-?	rs10769783	0	10769783	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p14.3	11	25200053	NR	LUZP2 - RPL36AP40	338645	554234		      117.41	      388.31	rs113652043-?	rs113652043	0	113652043	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p11.2	11	45529203	NR	HMGN2P37 - CHST1	100874481	8534		       14.75	      118.49	rs74360883-?	rs74360883	0	74360883	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q12.2	11	60274516	NR	MIR6503 - MS4A4A	102465250	51338		       65.36	        6.03	rs77406754-?	rs77406754	0	77406754	Intergenic	1	NR	9E-7	6.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q14.1	11	83869263	NR	DLG2			1740			rs76809954-?	rs76809954	0	76809954	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q23.2	11	113242430	NR	NCAM1			4684			rs61902539-?	rs61902539	0	61902539	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p13.33	12	1878079	NR	CACNA2D4			93589			rs7308134-?	rs7308134	0	7308134	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	12	17576057	NR	TIMM17BP1 - MIR3974	390298	100616279		      174.87	       97.24	rs1186300-?	rs1186300	0	1186300	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	12	18871624	NR	CAPZA3 - RPL7P6	93661	90193		      132.44	      217.51	rs12319113-?	rs12319113	0	12319113	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q21.32	12	86751446	NR	MGAT4C			25834			rs2217235-?	rs2217235	0	2217235	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q12.3	13	30387331	NR	LINC00426 - UBE2L5P	100188949	171222		       13.43	       40.65	rs6490455-?	rs6490455	0	6490455	Intergenic	1	NR	9E-7	6.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q13.1	14	33360114	NPAS3	NPAS3			64067			rs2274511-?	rs2274511	0	2274511	intron	0	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q21.2	14	44577426	NR	FSCB - DOCK11P1	84075	100132537		       70.13	      282.53	rs113317269-?	rs113317269	0	113317269	Intergenic	1	NR	6E-7	6.221848749616355		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q22.31	15	63599762	NR	FBXL22;USP3-AS1			283807;100130855			rs57017013-?	rs57017013	0	57017013	intron;intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q15.1	15	42142639	NR	PLA2G4F			255189			rs1356410-?	rs1356410	0	1356410	missense	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16q12.2	16	55845708	NR	CES5A			221223			rs7184362-?	rs7184362	0	7184362	nearGene-3	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p13.12	16	13124048	NR	SHISA9			729993			rs4781415-?	rs4781415	0	4781415	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	18	1807673	NR	LINC00470 - METTL4	56651	64863		      448.04	      729.85	rs9964595-?	rs9964595	0	9964595	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	19	3435547	NR	NFIC			4782			rs72974768-?	rs72974768	0	72974768	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p33	1	46962886	NR	CYP4A11 - CYP4X1	1579	260293		       21.40	       60.68	rs150968551-?	rs150968551	0	150968551	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p31.3	1	67134418	NR	C1orf141			400757			rs12069782-?	rs12069782	0	12069782	intron	0	NR	3E-7	6.522878745280337		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p16.3	2	47942243	NR	RPS27AP7 - VN1R18P	728971	100133087		       58.33	       47.38	rs34198350-?	rs34198350	0	34198350	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2q32.1	2	184429189	NR	MIR548AE1 - ZNF804A	100616305	91752		       50.15	      169.18	rs11691711-?	rs11691711	0	11691711	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q24	3	143724261	NR	SLC9A9			285195			rs7645841-?	rs7645841	0	7645841	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.3	3	212236	NR	CHL1			10752			rs11917787-?	rs11917787	0	11917787	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p22.1	6	30256461	NR	HCG17			414778			rs116624347-?	rs116624347	1	1579220	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	6p24.1	6	13225739	NR	PHACTR1			221692			rs12195574-?	rs12195574	0	12195574	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q31.1	7	109701895	NR	C7orf66 - EIF3IP1	154907	442720		      817.32	      257.33	rs2692877-?	rs2692877	0	2692877	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	7q11.22	7	68561096	NR	MTND4P3 - RNA5SP231	100873189	100873489		      294.23	      162.82	rs13236930-?	rs13236930	0	13236930	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q21.1	10	58908811	NR	FAM133CP - LINC00844	728640	100507008		      191.28	       90.71	rs61458523-?	rs61458523	0	61458523	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q26.11	10	117494227	NR	EMX2OS			196047			rs11198013-?	rs11198013	0	11198013	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	12	17487017	NR	TIMM17BP1 - MIR3974	390298	100616279		       85.83	      186.28	rs10219673-?	rs10219673	0	10219673	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [5,486,770] (Imputed)	N
07/23/2014	24324551	Deng X	11/20/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24324551	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q12	17	34095680	NR	ASIC2			40			rs116908816-?	rs116908816	0	116908816	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [5,486,770] (Imputed)	N
05/28/2014	24256812	Fogh I	11/20/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24256812	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	17q11.2	17	28283226	SALM1	KRT18P55			284085			rs34517613-T	rs34517613	0	34517613	intron	0	NR	9E-9	8.045757490560675		   1.20	[1.12-1.29] 	Illumina [~ 7 Million] (imputed)	N
05/28/2014	24256812	Fogh I	11/20/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24256812	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	18q11.2	18	23664073	ANKRD29	ANKRD29			147463			rs1788776-A	rs1788776	0	1788776	intron	0	NR	8E-6	5.096910013008055		   1.11	[1.06-1.16] 	Illumina [~ 7 Million] (imputed)	N
05/28/2014	24256812	Fogh I	11/20/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24256812	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	19p13.11	19	17641880	UNC13A	UNC13A			23025			rs12608932-?	rs12608932	0	12608932	intron	0	0.335	6E-6	5.221848749616356		NR	NR	Illumina [~ 7 Million] (imputed)	N
05/28/2014	24256812	Fogh I	11/20/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24256812	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	9p21.2	9	27543283	Intergenic	IFNK - C9orf72	56832	203228		       16.79	        3.26	rs3849942-?	rs3849942	0	3849942	Intergenic	1	0.237	1E-8	8		NR	NR	Illumina [~ 7 Million] (imputed)	N
07/22/2014	24253340	Lencz T	11/19/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24253340	Genome-wide association study implicates NDST3 in schizophrenia and bipolar disorder.	Schizophrenia	904 Ashkenzai Jewish cases, 1,640 Ashkenzai Jewish controls	3,944 European ancestry cases, 3,049 European ancestry controls, 921 African American cases, 954 African American controls, 550 Japanese ancestry cases, 530 Japanese ancestry controls	4q26	4	117725752	NDST3	NT5C3AP1 - NDST3	90859	9348		      149.57	      307.77	rs11098403-G	rs11098403	0	11098403	Intergenic	1	NR	3E-8	7.522878745280337		   1.15	[1.08-1.21] 	Illumina [762,372] 	N
07/25/2014	24241537	Bonnelykke K	11/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24241537	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood, severe)	1,173 European ancestry cases, 2,511 European ancestry controls	7,178 European ancestry cases, 10,383 European ancestry controls, 63 cases, 3,605 controls	7q22.3	7	106018005	CDHR3	CDHR3			222256			rs6967330-A	rs6967330	0	6967330	missense	0	0.19	3E-14	13.52287874528034		   1.26	[1.18-1.33] 	Affymetrix and Illumina [124,514]	N
07/25/2014	24241537	Bonnelykke K	11/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24241537	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood, severe)	1,173 European ancestry cases, 2,511 European ancestry controls	7,178 European ancestry cases, 10,383 European ancestry controls, 63 cases, 3,605 controls	17q12	17	39905943	GSDMB	GSDMB			55876			rs2305480-G	rs2305480	0	2305480	missense	0	0.6	6E-23	22.22184874961636		   1.32	[1.23-1.39] 	Affymetrix and Illumina [124,514]	N
07/25/2014	24241537	Bonnelykke K	11/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24241537	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood, severe)	1,173 European ancestry cases, 2,511 European ancestry controls	7,178 European ancestry cases, 10,383 European ancestry controls, 63 cases, 3,605 controls	9p24.1	9	6213387	IL33	IL33			90865			rs928413-G	rs928413	0	928413	nearGene-5	0	0.28	9E-13	12.04575749056067		   1.24	[1.17-1.32] 	Affymetrix and Illumina [124,514]	N
07/25/2014	24241537	Bonnelykke K	11/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24241537	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood, severe)	1,173 European ancestry cases, 2,511 European ancestry controls	7,178 European ancestry cases, 10,383 European ancestry controls, 63 cases, 3,605 controls	5q31.1	5	132634182	RAD50	RAD50			10111			rs6871536-C	rs6871536	0	6871536	intron	0	0.22	8E-7	6.096910013008056		   1.17	[1.10-1.25] 	Affymetrix and Illumina [124,514]	N
07/25/2014	24241537	Bonnelykke K	11/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24241537	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood, severe)	1,173 European ancestry cases, 2,511 European ancestry controls	7,178 European ancestry cases, 10,383 European ancestry controls, 63 cases, 3,605 controls	17q21.1	17	39965740	GSDMA	GSDMA			284110			rs3894194-A	rs3894194	0	3894194	missense	0	NR	3E-21	20.52287874528034		   1.59	[1.44-1.76] 	Affymetrix and Illumina [124,514]	N
07/25/2014	24241537	Bonnelykke K	11/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24241537	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood, severe)	1,173 European ancestry cases, 2,511 European ancestry controls	7,178 European ancestry cases, 10,383 European ancestry controls, 63 cases, 3,605 controls	5q31.1	5	132660151	IL13	IL13			3596			rs1295686-T	rs1295686	0	1295686	intron	0	NR	2E-6	5.698970004336018		   1.31	[1.17-1.48] 	Affymetrix and Illumina [124,514]	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	14q24.2	14	69989982	SMOC1	SMOC1			64093			rs227425-G	rs227425	0	227425	intron	0	0.53	4E-13	12.39794000867204	(spine)	   2.20	[NR] unit decrease	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	21q22.13	21	36476036	CLDN14	CLDN14			23562			rs170183-G	rs170183	0	170183	intron	0	0.53	4E-9	8.397940008672036	(hip, female)	   1.92	[NR] unit increase	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	21q22.13	21	36476036	CLDN14	CLDN14			23562			rs170183-G	rs170183	0	170183	intron	0	0.53	6E-8	7.221848749616355	(FNK, female)	   1.70	[NR] unit increase	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	4p16.3	4	1005657	FGFRL1	IDUA - FGFRL1	3425	53834		        1.10	        6.17	rs6827815-?	rs6827815	0	6827815	Intergenic	1	NR	5E-12	11.30102999566398	(FNK)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	14q24.2	14	69989982	SMOC1	SMOC1			64093			rs227425-G	rs227425	0	227425	intron	0	0.53	2E-6	5.698970004336018	(hip)	   1.50	[NR] (unit decrease)	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	14q24.2	14	69989982	SMOC1	SMOC1			64093			rs227425-G	rs227425	0	227425	intron	0	0.53	4E-7	6.397940008672037	(spine, EA)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	14q24.2	14	69989982	SMOC1	SMOC1			64093			rs227425-G	rs227425	0	227425	intron	0	0.48	1E-6	5.999999999999999	(spine, East Asian)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	21q22.13	21	36476036	CLDN14	CLDN14			23562			rs170183-G	rs170183	0	170183	intron	0	0.53	2E-7	6.698970004336019	(hip, female, EA)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	1p36.12	1	22373858	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      107.56	       77.99	rs34920465-?	rs34920465	0	34920465	Intergenic	1	NR	3E-13	12.52287874528034	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	1p31.3	1	68191827	GPR177	WLS;GNG12-AS1			79971;100289178			rs1430740-?	rs1430740	0	1430740	intron;intron	0	NR	1E-11	11	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	4q22.1	4	87878558	MEPE	MEPE - HSP90AB3P	56955	3327		       31.74	       13.19	rs1463104-?	rs1463104	0	1463104	Intergenic	1	NR	2E-9	8.698970004336019	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	5q14.3	5	89031965	MEF2C	MEF2C-AS1			101929423			rs6894139-?	rs6894139	0	6894139	ncRNA	0	NR	7E-18	17.15490195998574	(FNK)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	6q25.1	6	151577371	C6orf97	CCDC170			80129			rs1871859-?	rs1871859	0	1871859	intron	0	NR	9E-13	12.04575749056067	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	7q21.3	7	96490169	FLJ42280	C7orf76			401388			rs10429035-?	rs10429035	0	10429035	intron	0	NR	4E-12	11.39794000867204	(hip)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	7q31.31	7	121343289	WNT16	WNT16 - FAM3C	51384	10447		        2.19	        5.56	rs10242100-?	rs10242100	0	10242100	Intergenic	1	NR	2E-10	9.698970004336017	(hip)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	8q24.12	8	119001037	TNFRSF11B	COLEC10			10584			rs4424296-?	rs4424296	0	4424296	intron	0	NR	9E-14	13.04575749056067	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	11p15.2	11	15688538	SOX6	LOC102724957			102724957			rs7108738-?	rs7108738	0	7108738	intron	0	NR	1E-15	15	(FNK)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	11q13.2	11	68427636	LRP5	LRP5			4041			rs525592-?	rs525592	0	525592	intron	0	NR	3E-11	10.52287874528034	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	13q14.11	13	42394913	TNFSF11	FABP3P2 - TNFSF11	56677	8600		       25.16	      167.82	rs9533095-?	rs9533095	0	9533095	Intergenic	1	NR	2E-15	14.69897000433602	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	16q24.1	16	86681109	FOXL1	FOXL1 - RPL39P30	2300	100271519		       99.41	      587.02	rs71390846-?	rs71390846	0	71390846	Intergenic	1	NR	2E-10	9.698970004336017	(hip)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	1p36.12	1	22373858	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      107.56	       77.99	rs34920465-?	rs34920465	0	34920465	Intergenic	1	NR	3E-8	7.522878745280337	(FNK)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	16q24.1	16	86681109	FOXL1	FOXL1 - RPL39P30	2300	100271519		       99.41	      587.02	rs71390846-?	rs71390846	0	71390846	Intergenic	1	NR	2E-6	5.698970004336018	(FNK)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	13q14.11	13	42377313	AKAP11	FABP3P2 - TNFSF11	56677	8600		        7.56	      185.42	rs9533090-?	rs9533090	0	9533090	Intergenic	1	NR	3E-7	6.522878745280337	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/20/2014	24249740	Zhang L	11/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24249740	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males 	10p12.1	10	28191013	MPP7	MPP7			143098			rs3905706-?	rs3905706	0	3905706	intron	0	NR	8E-6	5.096910013008055	(spine)	NR	NR	Illumina & Affymetrix [5,842,825] (Imputed)	N
07/22/2014	24234648	Goris A	11/13/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24234648 	No evidence for shared genetic basis of common variants in multiple sclerosis and amyotrophic lateral sclerosis.	Multiple sclerosis or amyotrophic lateral sclerosis	4,088 Multiple sclerosis cases, 3,762 Amyotrophic lateralsclerosis cases, 12,030 controls	NA	17q21.32	17	47530206	NPEPPS	NPEPPS			9520			rs2935183-?	rs2935183	0	2935183	nearGene-5	0	NR	5E-7	6.30102999566398		NR	NR	NR [5,440,446] (imputed)	N
07/22/2014	24220699	Gudmundsson J	11/13/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24220699	A common variant at 8q24.21 is associated with renal cell cancer.	Renal cell carcinoma	1,505 European ancestry cases, 67,725 European ancestry controls	906 European ancestry cases, 3,772 European ancestry controls	8q24.21[rs35252396]; 8q24.21[rs6470588]			MYC, PVT1	 - 						2-SNP haplotype	rs35252396, rs6470588, rs6470589					0.46	5E-11		(rs35252396-CG, rs6470588-C, rs6470589-G)	   1.27	[1.18-1.37] 	Illumina [785,863] (imputed)	N
07/22/2014	24265751	Li W	11/12/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24265751	DNA pooling base genome-wide association study identifies variants at NRXN3 associated with delayed encephalopathy after acute carbon monoxide poisoning.	Delayed encephalopathy in acute carbon monoxide poisoning	175 Han Chinese ancestry cases, 244 Han Chinese ancestry controls	234 Han Chinese ancestry cases, 271 Han Chinese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
07/22/2014	24220910	Purdue MP	11/12/2013	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/24220910	A genome-wide association study of renal cell carcinoma among African Americans.	Renal cell carcinoma	255 African American cases, 375 African American controls	140 African American cases, 543 African American controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [1,136,723]	N
07/22/2014	24244560	Chen P	11/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24244560	A study assessing the association of glycated hemoglobin A1C (HbA1C) associated variants with HbA1C, chronic kidney disease and diabetic retinopathy in populations of Asian ancestry.	Glycated hemoglobin levels	3,427 Chinese ancestry individuals, 1,735 Malay ancestry individuals, 1,520 Asian Indian ancestry individuals	NA	7p13	7	44189469	GCK	GCK			2645			rs1799884-T	rs1799884	0	1799884	nearGene-5	0	0.17	6E-8	7.221848749616355	(HbA1c)	    .44	[0.42-0.46] unit increase	Illumina [up to 2.4 Million] (imputed)	N
07/22/2014	24244560	Chen P	11/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24244560	A study assessing the association of glycated hemoglobin A1C (HbA1C) associated variants with HbA1C, chronic kidney disease and diabetic retinopathy in populations of Asian ancestry.	Glycated hemoglobin levels	3,427 Chinese ancestry individuals, 1,735 Malay ancestry individuals, 1,520 Asian Indian ancestry individuals	NA	17q25.3	17	82727657	FN3K	FN3KRP			79672			rs1046896-T	rs1046896	0	1046896	ncRNA	0	0.47	2E-7	6.698970004336019	(HbA1c)	    .03	[0.019-0.043] unit increase	Illumina [up to 2.4 Million] (imputed)	N
07/22/2014	24244560	Chen P	11/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24244560	A study assessing the association of glycated hemoglobin A1C (HbA1C) associated variants with HbA1C, chronic kidney disease and diabetic retinopathy in populations of Asian ancestry.	Glycated hemoglobin levels	3,427 Chinese ancestry individuals, 1,735 Malay ancestry individuals, 1,520 Asian Indian ancestry individuals	NA	17q21.31	17	44164561	G6PC3	C17orf53 - ASB16	78995	92591		        2.09	        6.15	rs12602486-G	rs12602486	0	12602486	Intergenic	1	0.03	1E-24	24	(HbA1c, Malay)	    .36	[0.29-0.43] unit decrease	Illumina [up to 2.4 Million] (imputed)	N
05/13/2014	24223155	Behr ER	11/06/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24223155	Genome wide analysis of drug-induced torsades de pointes: lack of common variants with large effect sizes.	Drug-induced torsades de pointes	216 European ancestry cases, 386 European ancestry drug-exposed controls, 385 European ancestry population controls 	NA	18q12.2	18	35977503	C18orf21, RPRD1A, MIR187, GALNT1	C18orf21			83608			rs2276314-?	rs2276314	0	2276314	missense	0	0.19	4E-7	6.397940008672037	(all controls combined)	   2.00	[1.5-2.6] 	Illumina [3,542,142] (imputed)	N
06/25/2014	24190013	Earp MA	11/05/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24190013	Genome-wide association study of subtype-specific epithelial ovarian cancer risk alleles using pooled DNA.	Epithelial ovarian cancer	84 European ancestry mucinous cases, 114 European ancestry endometroid or clear cell cases, 75 European ancestry low malignant potential serous cases, 272 European ancestry invasive serous cases, 398 European ancestry controls	1,483 European ancestry mucinous cases, 2,903 European ancestry endometroid or clear cell cases, 892 European ancestry low malignant potential serous cases, 6,881 European ancestry invasive serous cases, up to 21,530 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to 448,500] (pooled)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2	1	114405659	TRIM33, BCAS2, DENND2C	TRIM33;LOC101928890			51592;101928890			rs6537825-A	rs6537825	0	6537825	missense;intron	0	NR	3E-8	7.522878745280337		   1.40	[NR] 	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2	1	114697195	AMPD1, NRAS, CSDE1	AMPD1			270			rs926938-A	rs926938	0	926938	nearGene-5	0	0.50	4E-8	7.397940008672037		   1.27	[NR] 	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	12q23.1	12	97040442	NEDD1	NEDD1 - TRNAQ46P	121441	100189509		       86.75	       56.47	rs6538761-A	rs6538761	0	6538761	Intergenic	1	NR	2E-6	5.698970004336018		   1.24	[NR] 	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs926938]; 1p13.2[rs8453]			AMPD1, NRAS, CASDE1	 - 						2-SNP haplotype	rs926938, rs8453					0.481	3E-8		(rs926938-A, rs8453-G)	NR	NR	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs926938]; 1p13.2[rs8453]			AMPD, NRAS, CASDE1	 - 						3-SNP haplotype	rs926938, rs8453, rs10489525					0.465	9E-8		(rs926938-A, rs8453-G, rs10489525-G)	NR	NR	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs6537825]; 1p13.2[rs11582563]			TRIM33	 - 						6-SNP haplotype	rs6537825, rs11582563, rs11585926, rs11589568, rs7511633, rs6661053					0.382	2E-7		(AGTTGT)	NR	NR	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs6537825]; 1p13.2[rs11582563]			TRIM33	 - 						7-SNP haplotype	rs6537825, rs11582563, rs11585926, rs11589568, rs7511633, rs6661053, rs11102800					0.382	6E-8		(AGTTGTC)	NR	NR	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs6537825]; 1p13.2[rs11582563]			TRIM33	 - 						8-SNP haplotype	rs6537825, rs11582563, rs11585926, rs11589568, rs7511633, rs6661053, rs11102800, rs3827735					0.382	6E-8		(AGTTGTCC)	NR	NR	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs6537825]; 1p13.2[rs11582563]			TRIM33	 - 						9-SNP haplotype	rs6537825, rs11582563, rs11585926, rs11589568, rs7511633, rs6661053, rs11102800, rs3827735, rs11102807 					0.382	4E-8		(AGTTGTCCA)	NR	NR	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs10858047]; 1p13.2[rs11587400]			TRIM33, BCAS2	 - 						3-SNP haplotype	rs10858047, rs11587400, rs1877455					0.444	8E-8		(rs10858047-T, rs11587400-C, rs1877455-T)	NR	NR	Illumina [702,234] (imputed)	N
07/23/2014	24189344	Xia K	11/05/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24189344	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 cases and 550 controls from 275 Chinese ancestry trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 cases and 2,598 controls from 1,299 European ancestry trios	1p13.2[rs11587400]; 1p13.2[rs1877455]			TRIM33, BCAS2	 - 						2-SNP haplotype	rs11587400, rs1877455 					0.449	7E-8		(rs11587400-C, rs1877455-T)	NR	NR	Illumina [702,234] (imputed)	N
04/02/2014	24080446	Rudolph A	11/04/2013	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/24080446	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Breast cancer (menopausal hormone therapy interaction)	2,920 European ancestry cases	7,689 European ancestry cases, 9,266 European ancestry controls	13q12.3	13	28590646	POMP	FLT1 - EIF4A1P7	2321	341784		       95.52	        8.17	rs9579199-?	rs9579199	0	9579199	Intergenic	1	NR	8E-6	5.096910013008055		   1.20	[1.11-1.32] 	Illumina [2.5 million] (Imputed)	N
04/02/2014	24080446	Rudolph A	11/04/2013	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/24080446	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Breast cancer (menopausal hormone therapy interaction)	2,920 European ancestry cases	7,689 European ancestry cases, 9,266 European ancestry controls	16q23.3	16	81924693	PLCG2	PLCG2			5336			rs7192724-?	rs7192724	0	7192724	intron	0	NR	3E-6	5.522878745280337		   1.24	[1.13-1.36] 	Illumina [2.5 million] (Imputed)	N
04/02/2014	24080446	Rudolph A	11/04/2013	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/24080446	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Lobular breast cancer (menopausal hormone therapy interaction)	541 European ancestry cases	676 European ancestry cases, 9,266 European ancestry controls	3q13.33	3	119542528	CD80	CD80			941			rs7648642-?	rs7648642	0	7648642	intron	0	NR	5E-6	5.301029995663981		   1.56	[1.28-1.89] 	Illumina [2.5 million] (Imputed)	N
04/02/2014	24080446	Rudolph A	11/04/2013	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/24080446	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Lobular breast cancer (menopausal hormone therapy interaction)	541 European ancestry cases	676 European ancestry cases, 9,266 European ancestry controls	17q12	17	34662519	TMEM132E	TMEM132E - CCT6B	124842	10693		       23.20	      265.34	rs11654964-?	rs11654964	0	11654964	Intergenic	1	NR	3E-6	5.522878745280337		   1.67	[1.35-2.06] 	Illumina [2.5 million] (Imputed)	N
05/13/2014	24185611	Cook MB	11/02/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24185611	A genome-wide association study of prostate cancer in West African men.	Prostate cancer	474 West African ancestry cases, 458 West African ancestry controls	5,096 African American cases, 4,972 African American controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,837,019]	N
06/26/2014	24236485	Cornejo-Garcia JA	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24236485	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	3q12.2	3	100872081	ABI3BP	ABI3BP			25890			rs9833094-T	rs9833094	0	9833094	intron	0	0.1683	5E-7	6.30102999566398	(East Asian)	   2.95	[1.88-4.64] 	Affymetrix [up to 644,046]	N
06/26/2014	24236485	Cornejo-Garcia JA	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24236485	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	14q24.3	14	76033960	IFT43	IFT43			112752			rs9323624-A	rs9323624	0	9323624	intron	0	0.6436	1E-6	5.999999999999999	(East Asian)	   2.88	[1.84-4.51] 	Affymetrix [up to 644,046]	N
06/26/2014	24236485	Cornejo-Garcia JA	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24236485	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	3q12.2	3	100872081	ABI3BP	ABI3BP			25890			rs9833094-?	rs9833094	0	9833094	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [up to 644,046]	N
06/26/2014	24236485	Cornejo-Garcia JA	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24236485	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	4q24	4	101511545	NR	FLJ20021 - BANK1	90024	55024		      162.66	      279.06	rs890448-?	rs890448	0	890448	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [up to 644,046]	N
06/26/2014	24236485	Cornejo-Garcia JA	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24236485	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	14q24.1	14	68285926	RAD51L1	RAD51B			5890			rs8008961-A	rs8008961	0	8008961	intron	0	0.2944	6E-6	5.221848749616356	(EA)	   2.44	[1.67-3.56] 	Affymetrix [up to 644,046]	N
06/26/2014	24236485	Cornejo-Garcia JA	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24236485	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	6q13	6	72197050	RIMS1	RIMS1			22999			rs2249625-C	rs2249625	0	2249625	intron	0	0.3821	5E-6	5.301029995663981	(EA)	   2.24	[1.55-3.24] 	Affymetrix [up to 644,046]	N
06/26/2014	24236485	Cornejo-Garcia JA	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24236485	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	5q15	5	98594262	RGMB, AKAP9	CTBP2P4 - DDX18P4	642909	402222		       17.01	       85.04	rs461409-?	rs461409	0	461409	Intergenic	1	NR	3E-6	5.522878745280337	(EA)	NR	NR	Affymetrix [up to 644,046]	N
05/13/2014	24192120	Kamide K	11/01/2013	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/24192120	Genome-wide response to antihypertensive medication using home blood pressure measurements: a pilot study nested within the HOMED-BP study.	Blood pressure (response to antihypertensive medication)	265 Japanese ancestry individuals	79 Japanese ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [298,046]	N
04/15/2014	24172245	Haga S	10/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24172245	A genome-wide association study of third molar agenesis in Japanese and Korean populations.	Tooth agenesis (mandibular third molar)	80 East Asian ancestry mandibular cases, 69 East Asian ancestry maxillary cases, 338 East Asian ancestry controls	N/A	10q21.3	10	63898984	Intergenic	MRPL35P2 - RPL7AP50	359743	87688		      264.16	        3.40	rs938036-T	rs938036	0	938036	Intergenic	1	NR	8E-6	5.096910013008055		   2.88	[1.81-4.59] 	Illumina [532,105]	N
04/15/2014	24172245	Haga S	10/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24172245	A genome-wide association study of third molar agenesis in Japanese and Korean populations.	Tooth agenesis (mandibular third molar)	80 East Asian ancestry mandibular cases, 69 East Asian ancestry maxillary cases, 338 East Asian ancestry controls	N/A	11q25	11	134868376	Intergenic	B3GAT1 - A1BG	27087			      456.39		rs906628-G	rs906628	0	906628	Intergenic	1	NR	8E-6	5.096910013008055		   4.35	[2.28-8.30] 	Illumina [532,105]	N
04/15/2014	24172245	Haga S	10/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24172245	A genome-wide association study of third molar agenesis in Japanese and Korean populations.	Tooth agenesis (maxillary third molar)	125 East Asian ancestry maxillary cases, 24 East Asian ancestry mandibular cases, 338 East Asian ancestry controls	N/A	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [532,105]	N
04/15/2014	24172245	Haga S	10/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24172245	A genome-wide association study of third molar agenesis in Japanese and Korean populations.	Tooth agenesis (third molar)	149 East Asian ancestry cases, 338 East Asian ancestry controls	N/A	2q22.1	2	137118305	THSD7B	THSD7B			80731			rs1469622-T	rs1469622	0	1469622	intron	0	NR	8E-6	5.096910013008055		   1.88	[1.43-2.47] 	Illumina [532,105]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	14q11.2	14	22533736	TRA	TRA			6955			rs1154155-G	rs1154155	0	1154155		0	0.148	5E-49	48.30102999566397		   1.64	[1.53-1.75] 	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	19p13.2[rs1551570]; 19p13.2[rs2305795]			P2RY11, DNMT1	 - 						rs1551570-?	rs1551570, rs2305795					0.458	4E-10			   1.32	[1.2-1.43] 	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	7q34	7	142357119	TRB	TRB			6957			rs2854536-?	rs2854536	0	2854536		0	0.292	4E-8	7.397940008672037		   1.28	[1.18-1.41] 	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	21q22.11[rs2834188]; 21q22.11[rs2409488]			IL10RB, INFAR1	 - 						rs2834188-?	rs2834188, rs2409488					0.705	2E-8			   1.30	[1.18-1.41] 	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	10q21.2	10	62631615	ZNF365	ZNF365			22891			rs10995245-A	rs10995245	0	10995245	intron	0	0.348	1E-11	11		   1.23	[1.16-1.31] 	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	6	32665936	NR	HLA-DQB1			3119			rs9274477-G	rs9274477	0	9274477	intron	0	0.292	2E-8	7.698970004336018		   1.82	 year decrease	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	6	32683763	NR	TRNAI25			100189401			rs17212223-T	rs17212223	0	17212223		0	0.191	3E-8	7.522878745280337		   1.95	 year decrease	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (age of onset)	at least 1,000 Chinese ancestry cases	NA	6p21.32	6	32658353	NR	TRNAI25			100189401			rs7744020-A	rs7744020	0	7744020		0	0.272	8E-9	8.096910013008056		   1.90	 year decrease	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	6	32605694	NR	TRNAI25			100189401			rs9270965-?	rs9270965	0	9270965		0	NR	5E-12	11.30102999566398		   1.72	[NR] 	Affymetrix [603,382]	N
05/13/2014	24204295	Han F	10/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24204295 	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy (onset before 2009 H1N1 influenza pandemic)	up to 893 Chinese ancestry cases with onset before the 2009 H1N1 influenza pandemic, up to 373 Chinese ancestry cases with onset after the 2009 H1N1 influenza pandemic	NA	6p21.32	6	32609018	NR	TRNAI25			100189401			rs9271117-?	rs9271117	0	9271117		0	NR	6E-14	13.22184874961636		   1.75	[NR] 	Affymetrix [603,382]	N
04/15/2014	24182552	Matteini AM	10/29/2013	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/24182552	Novel gene variants predict serum levels of the cytokines IL-18 and IL-1ra in older adults.	Inflammatory biomarkers	4,443 European ancestry older adults	N/A	11q23.1	11	112214593	BCO2, IL18, TEX12	BCO2			83875			rs2250417-T	rs2250417	0	2250417	intron	0	0.48	2E-32	31.69897000433602	(IL18)	    .10	[0.08-0.12] unit increase	Illumina [2,543,887] (imputed)	N
04/15/2014	24182552	Matteini AM	10/29/2013	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/24182552	Novel gene variants predict serum levels of the cytokines IL-18 and IL-1ra in older adults.	Inflammatory biomarkers	4,443 European ancestry older adults	N/A	2p22.3	2	32053713	SRD5A2, DPY30, SPAST, SLC30A6, NLRC4	DPY30 - SPAST	84661	6683		       13.89	        9.88	rs7577696-G	rs7577696	0	7577696	Intergenic	1	0.41	3E-19	18.52287874528033	(IL18)	    .08	[0.060-0.100] unit increase	Illumina [2,543,887] (imputed)	N
04/15/2014	24182552	Matteini AM	10/29/2013	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/24182552	Novel gene variants predict serum levels of the cytokines IL-18 and IL-1ra in older adults.	Inflammatory biomarkers	4,443 European ancestry older adults	N/A	2q13	2	113074756	IL1F10	IL1F10			84639			rs6743376-A	rs6743376	0	6743376	missense	0	0.43	2E-26	25.69897000433602	(IL-1ra)	    .13	[0.11-0.15] unit increase	Illumina [2,543,887] (imputed)	N
05/03/2014	24166486	Sleiman P	10/29/2013	Sci Rep	http://www.ncbi.nlm.nih.gov/pubmed/24166486 	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 schizophrenia cases, 377 schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 controls	2652 individuals	1q43	1	243445665	SDCCAG8	SDCCAG8			10806			rs6703335-?	rs6703335	0	6703335	intron	0	0.562	4E-9	8.397940008672036		NR	NR	Illumina & Affymetrix [NR] (imputed)	N
05/03/2014	24166486	Sleiman P	10/29/2013	Sci Rep	http://www.ncbi.nlm.nih.gov/pubmed/24166486 	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 schizophrenia cases, 377 schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 controls	2652 individuals	3p21.1	3	52781889	ITIH1	ITIH1			3697			rs2710323-?	rs2710323	0	2710323	intron	0	0.466	3E-8	7.522878745280337		NR	NR	Illumina & Affymetrix [NR] (imputed)	N
05/03/2014	24166486	Sleiman P	10/29/2013	Sci Rep	http://www.ncbi.nlm.nih.gov/pubmed/24166486 	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 schizophrenia cases, 377 schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 controls	2652 individuals	6p22.1	6	27742386	MHC	TRNAI25			100189401			rs17693963-?	rs17693963	0	17693963		0	0.904	2E-9	8.698970004336019		NR	NR	Illumina & Affymetrix [NR] (imputed)	N
05/03/2014	24166486	Sleiman P	10/29/2013	Sci Rep	http://www.ncbi.nlm.nih.gov/pubmed/24166486 	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 schizophrenia cases, 377 schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 controls	2652 individuals	7p22.3	7	1997034	MAD1L1	MAD1L1			8379			rs4721295-?	rs4721295	0	4721295	intron	0	0.378	6E-10	9.221848749616356		NR	NR	Illumina & Affymetrix [NR] (imputed)	N
05/03/2014	24166486	Sleiman P	10/29/2013	Sci Rep	http://www.ncbi.nlm.nih.gov/pubmed/24166486 	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 schizophrenia cases, 377 schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 controls	2652 individuals	8p23.2	8	4380617	CSMD1	CSMD1			64478			rs6558872-?	rs6558872	0	6558872	intron	0	0.571	5E-8	7.30102999566398		NR	NR	Illumina & Affymetrix [NR] (imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	7q22.1	7	102878584	FBXL13	FBXL13			222235			rs17135875-C	rs17135875	0	17135875	intron	0	0.01	1E-6	5.999999999999999	(DBP, Time 0)	   2.81	[1.67-3.95] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	2q37.1	2	233910224	TRPM8	MSL3P1 - TRPM8	151507	79054		       41.82	        7.17	rs7577262-A	rs7577262	0	7577262	Intergenic	1	0.37	7E-7	6.154901959985743	(MAP, Time 0)	   1.00	[0.61-1.39] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	7q22.1	7	102878584	FBXL13	FBXL13			222235			rs17135875-C	rs17135875	0	17135875	intron	0	0.01	4E-9	8.397940008672036	(MAP, Time 0)	   3.44	[2.30-4.58] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	7q22.1	7	102878584	FBXL13	FBXL13			222235			rs17135875-C	rs17135875	0	17135875	intron	0	0.01	3E-6	5.522878745280337	(SBP, Time 0)	   4.81	[2.81-6.81] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	2q37.1	2	233910224	TRPM8	MSL3P1 - TRPM8	151507	79054		       41.82	        7.17	rs7577262-A	rs7577262	0	7577262	Intergenic	1	0.37	3E-8	7.522878745280337	(SBP, Time 0)	   1.71	[1.1-2.32] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	22q12.3	22	33990484	LARGE	LARGE-AS1 - ISX	100506195	91464		      239.67	     1075.65	rs7286472-G	rs7286472	0	7286472	Intergenic	1	0.02	3E-7	6.522878745280337	(DBP)	   2.25	[1.39-3.11] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	2q31.2	2	178873542	CCDC141	CCDC141			285025			rs11693319-T	rs11693319	0	11693319	intron	0	0.02	2E-7	6.698970004336019	(SBP)	   4.72	[2.94-6.50] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q31.1	2	173462117	CDCA7	CDCA7 - RPL5P7	83879	344178		       93.13	      409.46	rs10930597-T	rs10930597	0	10930597	Intergenic	1	0.05	4E-8	7.397940008672037	(DBP, during intervention)	   3.20	[2.06-4.34] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q37.1	2	234394166	ARL4C	RPS20P12 - ARL4C	100271083	10123		       64.29	       98.88	rs11887188-T	rs11887188	0	11887188	Intergenic	1	0.03	2E-8	7.698970004336018	(DBP, during intervention)	   3.28	[2.14-4.42] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	16q12.1	16	51576036	SALL1	UNGP1 - HNRNPA1P48	57004	642659		      296.33	       69.72	rs2030114-A	rs2030114	0	2030114	Intergenic	1	0.01	7E-13	12.15490195998574	(DBP, during intervention)	   3.14	[2.28-4.00] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	17q24.2	17	66231245	APOH	APOH			350			rs11867410-C	rs11867410	0	11867410	nearGene-5	0	0.02	3E-7	6.522878745280337	(DBP, during intervention)	   3.96	[2.43-5.49] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q31.1	2	173462117	CDCA7	CDCA7 - RPL5P7	83879	344178		       93.13	      409.46	rs10930597-T	rs10930597	0	10930597	Intergenic	1	0.05	1E-8	8	(MAP, during intervention)	   3.48	[2.28-4.68] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q37.1	2	234394166	ARL4C	RPS20P12 - ARL4C	100271083	10123		       64.29	       98.88	rs11887188-T	rs11887188	0	11887188	Intergenic	1	0.03	1E-6	5.999999999999999	(MAP, during intervention)	   2.98	[1.76-4.20] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	6q14.1	6	78846449	IRAK1BP1	MEI4 - IRAK1BP1	101928601	134728		      921.69	       21.10	rs16890334-C	rs16890334	0	16890334	Intergenic	1	0.06	5E-7	6.30102999566398	(MAP, during intervention)	   3.20	[1.95-4.45] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	16q12.1	16	51576036	SALL1	UNGP1 - HNRNPA1P48	57004	642659		      296.33	       69.72	rs2030114-A	rs2030114	0	2030114	Intergenic	1	0.01	2E-6	5.698970004336018	(MAP, during intervention)	   4.12	[2.43-5.81] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	4q26	4	113940144	ARSJ	ARSJ			79642			rs4460079-C	rs4460079b	0	4460079	intron	0	0.21	3E-6	5.522878745280337	(MAP, during intervention)	   1.58	[0.91-2.25] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	17q24.2	17	66231245	APOH	APOH			350			rs11867410-C	rs11867410	0	11867410	nearGene-5	0	0.02	3E-7	6.522878745280337	(MAP, during intervention)	   4.21	[2.58-5.84] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q31.1	2	173462117	CDCA7	CDCA7 - RPL5P7	83879	344178		       93.13	      409.46	rs10930597-T	rs10930597	0	10930597	Intergenic	1	0.05	6E-6	5.221848749616356	(SBP, during intervention)	   3.99	[2.27-5.71] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	6q14.1	6	78846449	IRAK1BP1	MEI4 - IRAK1BP1	101928601	134728		      921.69	       21.10	rs16890334-C	rs16890334	0	16890334	Intergenic	1	0.06	1E-10	10	(SBP, during intervention)	   5.38	[3.73-7.03] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	4q26	4	113940144	ARSJ	ARSJ			79642			rs4460079-C	rs4460079b	0	4460079	intron	0	0.21	2E-7	6.698970004336019	(SBP, during intervention)	   2.33	[1.45-3.21] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	8p23.2	8	2923434	CSMD1	MIR7160 - CSMD1	102465695	64478		      846.79	       11.92	rs2627282-A	rs2627282	0	2627282	Intergenic	1	0.02	6E-7	6.221848749616355	(DBP, response to intervention)	   2.29	[1.39-3.19] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	11p11.2	11	44356606	ALX4	ALX4 - CD82	60529	3732		       46.42	      207.82	rs11037965-T	rs11037965	0	11037965	Intergenic	1	0.07	2E-6	5.698970004336018	(DBP, response to intervention)	   1.40	[0.83-1.97] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	8p23.2	8	2923434	CSMD1	MIR7160 - CSMD1	102465695	64478		      846.79	       11.92	rs2627282-A	rs2627282	0	2627282	Intergenic	1	0.02	3E-7	6.522878745280337	(MAP, response to intervention)	   2.33	[1.45-3.21] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	11p15.5	11	2631427	KCNQ1	KCNQ1;KCNQ1OT1			3784;10984			rs10832417-T	rs10832417	0	10832417	intron;ncRNA	0	0.31	4E-7	6.397940008672037	(MAP, response to intervention)	   1.05	[0.64-1.46] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	11p11.2	11	44356606	ALX4	ALX4 - CD82	60529	3732		       46.42	      207.82	rs11037965-T	rs11037965	0	11037965	Intergenic	1	0.07	3E-7	6.522878745280337	(MAP, response to intervention)	   1.40	[0.87-1.93] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	17p13.3	17	1422003	KCNQ1	CRK			1398			rs10832417-T	rs1083 2417	0	1083	UTR-3	0	0.31	1E-6	5.999999999999999	(SBP, response to intervention)	   1.30	[0.77-1.83] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	3q11.2	3	94524869	NSUN3	ARMC10P1 - WDR82P1	389137	728505		       17.22	      410.73	rs13067306-A	rs13067306	0	13067306	Intergenic	1	0.01	4E-7	6.397940008672037	(DBP, during intervention)	   4.86	[2.98-6.74] mmHg increase	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	6q14.1	6	78846449	IRAK1BP1	MEI4 - IRAK1BP1	101928601	134728		      921.69	       21.10	rs16890334-C	rs16890334	0	16890334	Intergenic	1	0.06	2E-6	5.698970004336018	(MAP, during intervention)	   3.39	[1.98-4.80] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	3q11.2	3	94524869	NSUN3	ARMC10P1 - WDR82P1	389137	728505		       17.22	      410.73	rs13067306-A	rs13067306	0	13067306	Intergenic	1	0.01	5E-6	5.301029995663981	(MAP, during intervention)	   4.51	[2.57-6.45] mmHg increase	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	6q14.1	6	78846449	IRAK1BP1	MEI4 - IRAK1BP1	101928601	134728		      921.69	       21.10	rs16890334-C	rs16890334	0	16890334	Intergenic	1	0.06	4E-9	8.397940008672036	(SBP, during intervention)	   5.43	[3.63-7.23] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	4q26	4	113942550	ARSJ	ARSJ			79642			rs7658266-T	rs7658266b	0	7658266	intron	0	0.21	3E-7	6.522878745280337	(SBP, during intervention)	   2.35	[1.45-3.25] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	8q12.1	8	57876522	FAM110B	RPL30P10 - FAM110B	100270982	90362		      483.64	      117.99	rs10504249-G	rs10504249	0	10504249	Intergenic	1	0.02	1E-7	7	(DBP, response to intervention)	   3.22	[2.02-4.42] mmHg increase	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	8q12.1	8	57876522	FAM110B	RPL30P10 - FAM110B	100270982	90362		      483.64	      117.99	rs10504249-G	rs10504249	0	10504249	Intergenic	1	0.02	4E-7	6.397940008672037	(MAP, response to intervention)	   2.95	[1.81-4.09] mmHg increase	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	1p21.1	1	106293321	PRMT6	SEPT2P1 - NDE1P1	100873333	100422372		      595.09	      524.33	rs1330225-C	rs1330225	0	1330225	Intergenic	1	0.01	1E-8	8	(DBP, during intervention)	   5.48	[3.60-7.36] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	2q31.1	2	173462117	CDCA7	CDCA7 - RPL5P7	83879	344178		       93.13	      409.46	rs10930597-T	rs10930597	0	10930597	Intergenic	1	0.05	5E-7	6.30102999566398	(DBP, during intervention)	   3.11	[1.89-4.33] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	1p21.1	1	106293321	PRMT6	SEPT2P1 - NDE1P1	100873333	100422372		      595.09	      524.33	rs1330225-C	rs1330225	0	1330225	Intergenic	1	0.01	7E-9	8.154901959985743	(MAP, during intervention)	   5.16	[3.42-6.90] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	2q31.1	2	173462117	CDCA7	CDCA7 - RPL5P7	83879	344178		       93.13	      409.46	rs10930597-T	rs10930597	0	10930597	Intergenic	1	0.05	4E-8	7.397940008672037	(MAP, during intervention)	   3.37	[2.17-4.57] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	2q31.1	2	173462117	CDCA7	CDCA7 - RPL5P7	83879	344178		       93.13	      409.46	rs10930597-T	rs10930597	0	10930597	Intergenic	1	0.05	7E-6	5.154901959985742	(SBP, during intervention)	   3.72	[2.09-5.35] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	5q21.2	5	105011948	RAB9BP1	NUDT12 - RAB9BP1	83594	9366		     1449.16	       87.53	rs13178964-G	rs13178964	0	13178964	Intergenic	1	0.05	5E-7	6.30102999566398	(SBP, during intervention)	   3.42	[2.09-4.75] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	6q14.1	6	78846449	IRAK1BP1	MEI4 - IRAK1BP1	101928601	134728		      921.69	       21.10	rs16890334-C	rs16890334	0	16890334	Intergenic	1	0.06	2E-7	6.698970004336019	(SBP, during intervention)	   4.32	[2.67-5.97] mmHg decrease	Affymetrix [2,216,774] (Imputed)	N
04/26/2014	24165912	He J	10/28/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24165912 	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	13q22.1	13	72985844	PIBF1	PIBF1			10464			rs8002688-T	rs8002688	0	8002688	intron	0	0.04	2E-9	8.698970004336019	(SBP, response to intervention)	   2.04	[1.37-2.71] mmHg increase	Affymetrix [2,216,774] (Imputed)	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	2q34	2	213683813	SPAG16	SPAG16			79582			rs6707387-A	rs6707387	0	6707387	intron	0	0.272	6E-7	6.221848749616355	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	3q23	3	140504952	CLSTN2	CLSTN2			64084			rs9862730-A	rs9862730	0	9862730	intron	0	0.109	3E-6	5.522878745280337	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	4q25	4	109806404	CFI, NOLA1	CFI - GAR1	3426	54433		        4.18	        9.11	rs4698790-T	rs4698790	0	4698790	Intergenic	1	0.279	9E-6	5.045757490560675	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	4q34.3	4	181861392	LOC728191, LOC100128118	LINC00290 - MGC45800	728081	90768		      702.24	      277.61	rs10520514-A	rs10520514	0	10520514	Intergenic	1	0.415	5E-6	5.301029995663981	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	5q11.2	5	56537692	LOC441073, MAP3K1	LOC101928448			101928448			rs30360-G	rs30360	0	30360	intron	0	0.293	9E-7	6.045757490560675	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	5q12.1	5	62778891	ISCA1L, HTR1A	ISCA1P1 - HTR1A	389293	3350		        1.55	     1181.16	rs16891077-A	rs16891077	0	16891077	Intergenic	1	0.209	9E-10	9.045757490560675	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	6p25.2	6	3307629	SLC22A23	SLC22A23			63027			rs9391988-A	rs9391988	0	9391988	intron	0	0.353	2E-6	5.698970004336018	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	10q23.1	10	81806930	LOC727960, NRG3	RPA2P2 - NRG3	389990	10718		      669.61	       68.38	rs9787485-T	rs9787485	0	9787485	Intergenic	1	0.149	5E-8	7.30102999566398	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	12p13.32	12	3759002	EFCAB4B, PARP11	EFCAB4B - PARP11	84766	57097		        5.80	       49.86	rs10744625-C	rs10744625	0	10744625	Intergenic	1	0.188	8E-6	5.096910013008055	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	13q14.11	13	44128733	LOC121838, SERP2	SMIM2-AS1			101929212			rs9525916-T	rs9525916	0	9525916	intron	0	0.43	7E-6	5.154901959985742	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	13q34	13	111128713	ARHGEF7	ARHGEF7			8874			rs12853515-G	rs12853515	0	12853515	intron	0	0.14	4E-6	5.397940008672037	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	15q25.3	15	86117489	LOC100129082, AGBL1	LOC101929701			101929701			rs12914656-C	rs12914656	0	12914656	nearGene-5	0	0.114	2E-6	5.698970004336018	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	16p13.13	16	12091953	SNX29, FLJ32790	SNX29;FLJ32790			92017;642696			rs8048589-C	rs8048589	0	8048589	intron;nearGene-5	0	0.181	4E-6	5.397940008672037	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (interaction)	820 European ancestry individuals	NA	20p11.23	20	18905094	C20orf79, LOC100130062	SCP2D1 - SLC24A3	140856	57419		       90.70	      307.55	rs742731-A	rs742731	0	742731	Intergenic	1	0.407	2E-6	5.698970004336018	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	1q42.2	1	233203465	PCNXL2	PCNXL2;LOC101927736			80003;101927736			rs4649444-A	rs4649444	0	4649444	intron;intron	0	0.205	1E-6	5.999999999999999	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	2p15	2	61649830	LOC100132037, LOC647077	RPS29P10 - RPS24P7	100132037	100216342		       60.17	      153.20	rs2421332-C	rs2421332	0	2421332	Intergenic	1	0.24	3E-9	8.522878745280337	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	3p14.1	3	65393619	MAGI1	MAGI1			9223			rs1016553-A	rs1016553	0	1016553	intron	0	0.058	6E-6	5.221848749616356	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	3q13.13	3	109132944	MORC1, FLJ22763	MORC1 - FLJ22763	27136	401081		       14.80	        3.77	rs4441659-A	rs4441659	0	4441659	Intergenic	1	0.122	3E-7	6.522878745280337	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	4q24	4	102428583	LOC100133085, NFKB1	SLC39A8 - NFKB1	64116	4790		       83.09	       72.75	rs6533014-A	rs6533014	0	6533014	Intergenic	1	0.479	7E-6	5.154901959985742	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	7q32.3	7	132168842	PLXNA4	PLXNA4			91584			rs12386622-A	rs12386622	0	12386622	intron	0	0.162	3E-6	5.522878745280337	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	10q26.11	10	117774246	EMX2, RAB11FIP2	EMX2 - RAB11FIP2	2018	22841		      224.70	      230.67	rs7088969-T	rs7088969	0	7088969	Intergenic	1	0.312	3E-8	7.522878745280337	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	11q14.3	11	92367190	FAT3, LOC401705, LOC100130038, LOC390239	FAT3			120114			rs7129229-T	rs7129229	0	7129229	intron	0	0.151	1E-6	5.999999999999999	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	12p13.2	12	12576382	LOC644467	RPL19P17 - CREBL2	100271287	1389		        7.58	       35.45	rs12302103-A	rs12302103	0	12302103	Intergenic	1	0.267	4E-6	5.397940008672037	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	13q21.33	13	69512198	LOC100128625, KLHL1	SRSF1P1 - KLHL1	100128625	57626		      103.46	      188.40	rs9572182-T	rs9572182	0	9572182	Intergenic	1	0.499	4E-7	6.397940008672037	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	16q22.1	16	69508473	CYB5B, NFAT5	CYB5B - MIR1538	80777	100302119		       42.21	       57.34	rs744972-C	rs744972	0	744972	Intergenic	1	0.256	9E-6	5.045757490560675	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (interaction)	820 European ancestry individuals	NA	16q23.3	16	83521920	CDH13	CDH13			1012			rs4074373-G	rs4074373	0	4074373	intron	0	0.158	7E-6	5.154901959985742	(n-6 PUFA)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	2q34	2	213683813	SPAG16	SPAG16			79582			rs6707387-A	rs6707387	0	6707387	intron	0	0.272	1E-6	5.999999999999999	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	3q23	3	140504952	CLSTN2	CLSTN2			64084			rs9862730-A	rs9862730	0	9862730	intron	0	0.109	4E-6	5.397940008672037	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	4q25	4	109806404	CFI, NOLA1	CFI - GAR1	3426	54433		        4.18	        9.11	rs4698790-T	rs4698790	0	4698790	Intergenic	1	0.279	5E-6	5.301029995663981	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	4q34.3	4	181861392	LOC728191, LOC100128118	LINC00290 - MGC45800	728081	90768		      702.24	      277.61	rs10520514-A	rs10520514	0	10520514	Intergenic	1	0.415	5E-6	5.301029995663981	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	5p15.2	5	14752741	ANKH	ANKH			56172			rs17250963-A	rs17250963	0	17250963	intron	0	0.217	7E-6	5.154901959985742	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	5q11.2	5	56537692	LOC441073, MAP3K1	LOC101928448			101928448			rs30360-G	rs30360	0	30360	intron	0	0.293	1E-6	5.999999999999999	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	5q12.1	5	62778891	ISCA1L, HTR1A	ISCA1P1 - HTR1A	389293	3350		        1.55	     1181.16	rs16891077-A	rs16891077	0	16891077	Intergenic	1	0.209	1E-9	8.999999999999998	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	6p25.2	6	3307629	SLC22A23	SLC22A23			63027			rs9391988-A	rs9391988	0	9391988	intron	0	0.353	2E-6	5.698970004336018	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	10q23.1	10	81806930	LOC727960, NRG3	RPA2P2 - NRG3	389990	10718		      669.61	       68.38	rs9787485-T	rs9787485	0	9787485	Intergenic	1	0.149	4E-8	7.397940008672037	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	12p13.32	12	3759002	EFCAB4B, PARP11	EFCAB4B - PARP11	84766	57097		        5.80	       49.86	rs10744625-C	rs10744625	0	10744625	Intergenic	1	0.188	9E-6	5.045757490560675	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	13q14.11	13	44128733	LOC121838, SERP2	SMIM2-AS1			101929212			rs9525916-T	rs9525916	0	9525916	intron	0	0.43	5E-6	5.301029995663981	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	13q34	13	111128713	ARHGEF7	ARHGEF7			8874			rs12853515-G	rs12853515	0	12853515	intron	0	0.14	2E-6	5.698970004336018	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	15q25.3	15	86117489	LOC100129082, AGBL1	LOC101929701			101929701			rs12914656-C	rs12914656	0	12914656	nearGene-5	0	0.114	2E-6	5.698970004336018	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	16p13.13	16	12091953	SNX29, FLJ32790	SNX29;FLJ32790			92017;642696			rs8048589-C	rs8048589	0	8048589	intron;nearGene-5	0	0.181	4E-6	5.397940008672037	(Protein (control))	NR	NR	Affymetrix [590,000]	N
05/13/2014	24204828	Zheng JS	10/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24204828	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (interaction)	820 European ancestry individuals	NA	20p11.23	20	18905094	C20orf79, LOC100130062	SCP2D1 - SLC24A3	140856	57419		       90.70	      307.55	rs742731-A	rs742731	0	742731	Intergenic	1	0.407	5E-6	5.301029995663981	(Carbohydrate)	NR	NR	Affymetrix [590,000]	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	1q32.2	1	207518704	CR1	CR1			1378			rs6656401-A	rs6656401	0	6656401	intron	0	0.197	6E-24	23.22184874961635		   1.18	[1.14-1.22] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	2q14.3	2	127135234	BIN1	BIN1 - CYP27C1	274	339761		       27.91	       48.60	rs6733839-T	rs6733839	0	6733839	Intergenic	1	0.409	7E-44	43.15490195998574		   1.22	[1.18-1.25] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p12.3	6	47520026	CD2AP	CD2AP			23607			rs10948363-G	rs10948363	0	10948363	intron	0	0.266	5E-11	10.30102999566398		   1.10	[1.07-1.13] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	7q35	7	143413669	EPHA1	EPHA1-AS1			285965			rs11771145-G	rs11771145	0	11771145	intron	0	0.662	1E-13	13		   1.11	[1.08-1.14] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	8p21.1	8	27610169	CLU	CLU;MIR6843			1191;102465508			rs9331896-T	rs9331896	0	9331896	intron;nearGene-3	0	0.621	3E-25	24.52287874528033		   1.16	[1.12-1.19] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11q12.2	11	60156035	MS4A6A	MS4A2 - MS4A6A	2206	64231		       57.57	       15.57	rs983392-A	rs983392	0	983392	Intergenic	1	0.597	6E-16	15.22184874961635		   1.11	[1.09-1.15] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11q14.2	11	86156833	PICALM	PICALM - FNTAP1	8301	283226		       86.95	       38.30	rs10792832-G	rs10792832	0	10792832	Intergenic	1	0.642	9E-26	25.04575749056067		   1.15	[1.12-1.18] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	19p13.3	19	1063444	ABCA7	ABCA7			10347			rs4147929-A	rs4147929	0	4147929	intron	0	0.19	1E-15	15		   1.15	[1.11-1.19] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	2q37.1	2	233159830	INPP5D	INPP5D			3635			rs35349669-T	rs35349669	0	35349669	intron	0	0.488	3E-8	7.522878745280337		   1.08	[1.05-1.11] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	5q14.3	5	88927603	MEF2C	MEF2C-AS1			101929423			rs190982-A	rs190982	0	190982	intron	0	0.592	3E-8	7.522878745280337		   1.08	[1.05-1.11] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	7p14.1	7	37801932	NME8	NECAP1P1 - NME8	442668	51314		      215.60	       46.67	rs2718058-A	rs2718058	0	2718058	Intergenic	1	0.627	5E-9	8.301029995663981		   1.08	[1.05-1.11] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	7q22.1	7	100406823	ZCWPW1	ZCWPW1			55063			rs1476679-T	rs1476679	0	1476679	intron	0	0.713	6E-10	9.221848749616356		   1.10	[1.06-1.12] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11p11.2	11	47536319	CELF1	CELF1			10658			rs10838725-C	rs10838725	0	10838725	intron	0	0.316	1E-8	8		   1.08	[1.05-1.11] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	14q22.1	14	52933911	FERMT2	FERMT2			10979			rs17125944-C	rs17125944	0	17125944	intron	0	0.092	8E-9	8.096910013008056		   1.14	[1.09-1.19] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	20q13.31	20	56443204	CASS4	CASS4			57091			rs7274581-T	rs7274581	0	7274581	intron	0	0.917	3E-8	7.522878745280337		   1.14	[1.09-1.19] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.32	6	32610753	HLA-DRB5,HLA-DRB1	TRNAI25			100189401			rs9271192-C	rs9271192	0	9271192		0	0.276	3E-12	11.52287874528034		   1.11	[1.08-1.18] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	8p21.2	8	27337604	PTK2B	PTK2B			2185			rs28834970-C	rs28834970	0	28834970	intron	0	0.366	7E-14	13.15490195998574		   1.10	[1.08-1.13] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11q24.1	11	121564878	SORL1	SORL1			6653			rs11218343-T	rs11218343	0	11218343	intron	0	0.961	1E-14	14		   1.30	[1.22-1.39] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	14q32.12	14	92460608	SLC24A4, RIN3	SLC24A4			123041			rs10498633-G	rs10498633	0	10498633	intron	0	0.783	6E-9	8.221848749616356		   1.10	[1.06-1.14] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	1q31.2	1	193656103	Intergenic	B3GALT2 - RPL23AP22	8707	100271291		      469.49	      100.71	rs6678275-C	rs6678275	0	6678275	Intergenic	1	0.169	3E-7	6.522878745280337		   1.09	[1.05-1.13] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	4p15.33	4	11628425	HS3ST1	RNA5SP156 - HSP90AB2P	100873422	391634		      214.27	     1707.96	rs6448799-T	rs6448799	0	6448799	Intergenic	1	0.3	7E-8	7.154901959985742		   1.08	[1.05-1.11] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	5q35.3	5	179811261	SQSTM1	SQSTM1			8878			rs72807343-T	rs72807343	0	72807343	intron	0	0.016	7E-7	6.154901959985743		   1.35	[1.20-1.52] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	6p21.1	6	41186912	TREML2	TRNAI25			100189401			rs9381040-C	rs9381040	0	9381040		0	0.703	6E-7	6.221848749616355		   1.08	[1.04-1.1] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	8q22.1	8	95041772	NDUFAF6	NDUFAF6			137682			rs7818382-T	rs7818382	0	7818382	intron	0	0.469	8E-8	7.096910013008055		   1.07	[1.04-1.10] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	10p14	10	11678309	ECHDC3	USP6NL-IT1 - ECHDC3	100507213	79746		      104.81	       64.05	rs7920721-G	rs7920721	0	7920721	Intergenic	1	0.387	3E-7	6.522878745280337		   1.07	[1.04-1.10] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11p15.5	11	941941	AP2A2	AP2A2			161			rs10751667-T	rs10751667	0	10751667	intron	0	0.634	6E-7	6.221848749616355		   1.08	[1.04-1.1] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	12q12	12	43573874	ADAMTS20	RPL21P101 - EEF1A1P17	100271431	401717		       12.54	       73.05	rs7295246-G	rs7295246	0	7295246	Intergenic	1	0.406	3E-7	6.522878745280337		   1.07	[1.04-1.10] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	14q32.33	14	106772332	IGH	IGH			3492			rs2337406-C	rs2337406	0	2337406		0	0.897	3E-7	6.522878745280337		   1.15	[1.09-1.2] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	15q21.2	15	50748601	SPPL2A	SPPL2A			84888			rs8035452-T	rs8035452	0	8035452	intron	0	0.661	3E-7	6.522878745280337		   1.08	[1.04-1.1] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	15q22.31	15	64433291	TRIP4	TRIP4			9325			rs74615166-C	rs74615166	0	74615166	intron	0	0.02	4E-7	6.397940008672037		   1.29	[1.17-1.42] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	17p13.2	17	5233752	SCIMP	SCIMP;LOC100130950			388325;100130950			rs7225151-A	rs7225151	0	7225151	intron;intron	0	0.121	4E-7	6.397940008672037		   1.10	[1.06-1.15] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	NR			ACE	 - 						chr17:61538148-A	chr17:61538148					0.018	3E-7			   1.34	[1.20-1.50] 	Illumina [7,055,881] (Imputed)	N
04/16/2014	24162737	European Alzheimer's Disease Initiative (EADI)	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162737	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	19q13.41	19	51224706	CD33	CD33			945			rs3865444-C	rs3865444	0	3865444	nearGene-5	0	0.693	3E-6	5.522878745280337		   1.06	[1.04-1.1] 	Illumina [7,055,881] (Imputed)	N
04/15/2014	24162738	Hu Z	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162738	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.32	6	32762235	HLA-DQB2	HLA-DQB2			3120			rs7453920-G	rs7453920	0	7453920	intron	0	0.87	5E-37	36.30102999566397		   1.89	[1.69-2.08] 	Illumina [490,610]	N
04/15/2014	24162738	Hu Z	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162738	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	6p21.33	6	31264334	HLA-C	TRNAI25			100189401			rs3130542-A	rs3130542	0	3130542		0	0.13	9E-14	13.04575749056067		   1.33	[1.23-1.44] 	Illumina [490,610]	N
04/15/2014	24162738	Hu Z	10/27/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24162738	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	22q11.21	22	21619030	UBE2L3	UBE2L3			7332			rs4821116-G	rs4821116	0	4821116	intron	0	0.59	2E-12	11.69897000433602		   1.22	[1.15-1.3] 	Illumina [490,610]	N
04/11/2014	24513584	Oei L	10/25/2013	Bone	http://www.ncbi.nlm.nih.gov/pubmed/24513584 	Genome-wide Association Study for Radiographic Vertebral Fractures: A Potential Role for the 16q24 BMD Locus versus Lessons Learned from Challenging Phenotype Definition.	Fractures (vertebral)	329 European ancesty cases, 2,666 European ancesty controls	5,619 European ancesty cases, 20,598 European ancesty controls, 101 Korean ancestry cases, 1,193 Korean ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,543,887] (Imputed)	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	3q26.2	3	169774313	TERC, ACTRT3, MYNN, LRRC34	MYNN			55892			rs10936599-C	rs10936599	0	10936599	cds-synon	0	0.76	5E-9	8.301029995663981		   1.18	[1.11-1.23] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	11p15.5	11	1852842	LSP1	LSP1			4046			rs907611-A	rs907611	0	907611	nearGene-5	0	0.31	4E-8	7.397940008672037		   1.15	[1.09-1.21] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	20p12.2	20	11007451	C20orf187, LOC339593	FAT1P1 - RPS11P1	170513	128718		      118.36	      337.93	rs6104690-A	rs6104690	0	6104690	Intergenic	1	0.56	7E-7	6.154901959985743		   1.12	[1.08-1.18] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	6p22.3	6	20766466	CDKAL1	CDKAL1			54901			rs4510656-C	rs4510656	0	4510656	intron	0	0.55	7E-7	6.154901959985743		   1.12	[1.08-1.18] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	8q21.13	8	81074718	NR	PAG1			55824			rs5003154-?	rs5003154	0	5003154	intron	0	NR	1E-6	5.999999999999999		   1.11	[1.06-1.16] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	13q34	13	113004794	NR	MCF2L			23263			rs4907479-?	rs4907479	0	4907479	intron	0	NR	3E-6	5.522878745280337		   1.13	[1.07-1.18] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	2q37.1	2	233656637	UGT1A	UGT1A10;UGT1A8			54575;54576			rs11892031-A	rs11892031	0	11892031	intron;intron	0	0.92	1E-7	7		   1.17	[1.11-1.25] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	3q28	3	189928144	TP63	MIR944 - LEPREL1	100126340	55214		       98.14	       28.58	rs710521-A	rs710521	0	710521	Intergenic	1	0.73	2E-11	10.69897000433602		   1.14	[1.10-1.19] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	4p16.3	4	1732512	TMEM129, TACC3, FGFR3	TACC3			10460			rs798766-T	rs798766	0	798766	intron	0	0.19	7E-25	24.15490195998574		   1.22	[1.18-1.27] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	5p15.33	5	1321972	TERT, CLPTML	CLPTM1L			81037			rs401681-C	rs401681	0	401681	intron	0	0.54	4E-11	10.39794000867204		   1.12	[1.08-1.16] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	8p22	8	18415371	NAT2	NAT2 - PSD3	10	23362		       14.16	      111.93	rs1495741-A	rs1495741	0	1495741	Intergenic	1	0.8	2E-10	9.698970004336017		   1.14	[1.09-1.18] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	12q12	12	38045401	PSCA	RNA5SP357 - RNA5SP358	100873616	100873617		     3839.58	      116.07	rs2294008-T	rs2204008	0	2204008	Intergenic	1	0.46	3E-15	14.52287874528034		   1.13	[1.10-1.16] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	8q24.21	8	127705823	Intergenic	CASC8 - CASC11	727677	100270680		      223.68	       24.51	rs9642880-T	rs9642880	0	9642880	Intergenic	1	0.45	4E-38	37.39794000867204		   1.24	[1.20-1.28] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	18q12.3[rs10775480]; 18q12.3[rs10853535]			SLC14A2	 - 						rs10775480-T	rs10775480, rs10853535					0.43	6E-8			   1.13	[1.08-1.19] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	19q12	19	29805946	CCNE1	C19orf12 - CCNE1	83636	898		       90.16	        5.95	rs8102137-C	rs8102137	0	8102137	Intergenic	1	0.33	1E-11	11		   1.13	[1.09-1.17] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	22q13.1	22	38936618	CBX6, APOBEC3A	CBX6 - APOBEC3A	23466	200315		       64.33	       20.90	rs1014971-T	rs1014971	0	1014971	Intergenic	1	0.62	1E-11	11		   1.13	[1.09-1.17] 	Illumina [462,190]	N
05/01/2014	24163127	Figueroa JD	10/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24163127	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	6p22.3	6	20751084	NR	CDKAL1			54901			rs7747724-?	rs7747724	0	7747724	intron	0	NR	1E-6	5.999999999999999		   1.11	[1.06-1.16] 	Illumina [462,190]	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	1p22.3	1	85331427	DDAH1	DDAH1			23576			rs28489187-G	rs28489187	0	28489187	intron	0	0.216	1E-40	40		    .37	[0.32-0.42] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	2p16.2	2	52722180	Intergenic	MIR4431 - ASB3	100616431	51130		       19.57	      947.80	rs1349882-T	rs1349882	0	1349882	Intergenic	1	0.395	5E-6	5.301029995663981		    .09	[0.053-0.131] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	1p22.3	1	86537789	Intergenic	CLCA1 - CLCA4	1179	22802		       37.50	        9.23	rs11161841-A	rs11161841	0	11161841	Intergenic	1	0.114	7E-7	6.154901959985743		    .18	[0.3-0.44] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	20p11.21	20	25286264	Intergenic	PYGB			5834			rs139672965-A	rs139672965	0	139672965	intron	0	0.01	8E-6	5.096910013008055		    .65	[0.37-0.94] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	2p11.2	2	86633508	Intergenic	RNF103-CHMP3			100526767			rs114532231-T	rs114532231	0	114532231	intron	0	0.008	2E-6	5.698970004336018		    .68	[0.4-0.96] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	2q23.3	2	152892854	Intergenic	UBQLN4P2 - ATP5F1P4	100131393	100422514		       14.32	      266.08	rs78683678-T	rs78683678	0	78683678	Intergenic	1	0.09	5E-6	5.301029995663981		    .17	[0.095-0.241] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	3p26.3	3	1992671	Intergenic	RPL21P17 - CNTN4	727810	152330		       86.50	      106.20	rs2729313-T	rs2729313	0	2729313	Intergenic	1	0.075	8E-6	5.096910013008055		    .17	[0.095-0.243] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	3q13.31	3	117524949	Intergenic	PTMAP8 - IGSF11	728873	152404		      497.91	     1375.68	rs72951640-T	rs72951640	0	72951640	Intergenic	1	0.014	5E-6	5.301029995663981		    .41	[0.23-0.58] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	4q24	4	102881008	Intergenic	CISD2			493856			rs78640361-T	rs78640361	1	223320	intron	0	0.248	1E-6	5.999999999999999		    .13	[0.076-0.178] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	5p13.2	5	35039381	Intergenic	AGXT2			64902			rs37370-T	rs37370	0	37370	missense	0	0.906	1E-7	7		    .18	[0.12-0.25] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	5q33.3	5	157079641	Intergenic	HAVCR1 - HAVCR2	26762	84868		       20.68	        6.19	rs193098517-A	rs193098517	0	193098517	Intergenic	1	0.008	8E-7	6.096910013008056		    .59	[0.36-0.83] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	6p24.3	6	9937127	Intergenic	OFCC1			266553			rs149747749-A	rs149747749	0	149747749	intron	0	0.005	8E-6	5.096910013008055		    .65	[0.36-0.93] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	7q21.11	7	82138856	Intergenic	CACNA2D1			781			rs117576300-A	rs117576300	0	117576300	intron	0	0.028	6E-6	5.221848749616356		    .30	[0.17-0.43] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	8p21.3	8	22786194	Intergenic	PEBP4			157310			rs12155789-G	rs12155789	0	12155789	intron	0	0.144	1E-6	5.999999999999999		    .15	[0.088-0.206] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	10q26.2	10	128584974	Intergenic	LINC01163 - MGMT	101927381	4255		      267.25	      882.22	rs193189882-A	rs193189882	0	193189882	Intergenic	1	0.009	2E-6	5.698970004336018		    .71	[0.42-1] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	10q21.2	10	61432656	Intergenic	TMEM26			219623			rs7088627-A	rs7088627	0	7088627	intron	0	0.653	7E-6	5.154901959985742		    .11	[0.061-0.151] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	10p13	10	12830881	Intergenic	CAMK1D			57118			rs2431623-G	rs2431623	0	2431623	UTR-3	0	0.369	9E-6	5.045757490560675		    .09	[0.05-0.132] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	11q13.4	11	72564865	Intergenic	ART2P - PDE2A	418	5138		       43.23	       11.28	rs183778342-A	rs183778342	0	183778342	Intergenic	1	0.003	3E-6	5.522878745280337		   1.27	[0.74-1.8] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	16q22.1	16	68723866	Intergenic	HSPE1P5 - CDH1	100506000	999		       37.18	       13.43	rs192253604-A	rs192253604	0	192253604	Intergenic	1	0.096	8E-7	6.096910013008056		    .18	[0.11-0.24] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	19q12	19	30544779	Intergenic	ZNF536			9745			rs10418356-G	rs10418356	0	10418356	intron	0	0.03	7E-6	5.154901959985742		    .26	[0.15-0.37] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric)	5110 European ancestry individuals	NA	16q24.1	16	84276793	NR	RNA5SP433 - WFDC1	100873683	58189		       13.87	       17.85	rs138642423-G	rs138642423	0	138642423	Intergenic	1	0.011	7E-6	5.154901959985742		    .48	[0.27-0.68] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	5p13.2	5	35037010	AGXT2	AGXT2			64902			rs37369-T	rs37369	0	37369	missense	0	0.088	2E-32	31.69897000433602		    .41	[0.34-0.48] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	1p22.3	1	85331427	DDAH1	DDAH1			23576			rs28489187-G	rs28489187	0	28489187	intron	0	0.216	1E-20	20		    .26	[0.20-0.31] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	6p24.3	6	9993504	NR	OFCC1			266553			rs116201121-A	rs116201121	0	116201121	intron	0	0.011	1E-6	5.999999999999999		    .52	[0.31-0.73] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	16p13.13	16	12503078	NR	SNX29			92017			rs117147010-T	rs117147010	0	117147010	intron	0	0.029	3E-6	5.522878745280337		    .35	[0.2-0.49] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p25.3	2	2541962	NR	MYT1L-AS1 - LINC01250	730811	101927554		      214.85	      353.09	rs181867028-T	rs181867028	0	181867028	Intergenic	1	0.004	8E-6	5.096910013008055		    .91	[0.51-1.31] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p25.1	2	9505503	NR	ADAM17;IAH1			6868;285148			rs55794209-A	rs55794209	0	55794209	intron;ncRNA	0	0.066	3E-6	5.522878745280337		    .23	[0.13-0.32] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p13.3	2	68806451	NR	ARHGAP25			9938			rs115522963-T	rs115522963	0	115522963	intron	0	0.003	3E-6	5.522878745280337		   1.16	[0.67-1.65] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	3q27.3	3	187988099	NR	BCL6 - LPP-AS2	604	339929		      242.37	      163.11	rs184662298-G	rs184662298	0	184662298	Intergenic	1	0.996	3E-6	5.522878745280337		   1.39	[0.8-1.97] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	4p14	4	38159443	NR	MRPS33P2 - LINC01258	359775	101928776		      152.34	      261.22	rs115426111-T	rs115426111	0	115426111	Intergenic	1	0.998	7E-6	5.154901959985742		   1.40	[0.79-2.01] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	4q31.22	4	146438979	NR	SLC10A7			84068			rs191493117-C	rs191493117	0	191493117	intron	0	0.998	3E-6	5.522878745280337		   2.06	[1.2-2.92] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	4q35.1	4	184086240	NR	STOX2 - ENPP6	56977	133121		       62.71	        2.47	rs4862307-T	rs4862307	0	4862307	Intergenic	1	0.349	6E-6	5.221848749616356		    .10	[0.055-0.141] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	16q23.1	16	76812369	NR	CNTNAP4 - MIR4719	85445	100616172		      253.13	       56.57	rs113716969-C	rs113716969	0	113716969	Intergenic	1	0.016	2E-6	5.698970004336018		    .47	[0.28-0.67] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	6p24.2	6	10921298	NR	SYCP2L			221711			rs190994806-A	rs190994806	0	190994806	intron	0	0.003	9E-6	5.045757490560675		   1.20	[0.67-1.73] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	7p22.1	7	7219639	NR	C1GALT1			56913			rs12702595-A	rs12702595	0	12702595	intron	0	0.444	6E-7	6.221848749616355		    .10	[0.062-0.14] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	9p21.1	9	31450668	NR	LINC01243 - HMGB3P23	101929620	100288563		       69.18	      192.68	rs148359873-T	rs148359873	0	148359873	Intergenic	1	0.03	5E-6	5.301029995663981		    .34	[0.2-0.49] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10p11.22	10	32336090	NR	EPC1			80314			rs143713361-T	rs143713361	0	143713361	intron	0	0.022	8E-6	5.096910013008055		    .40	[0.22-0.57] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10q22.3	10	79425558	NR	ZCCHC24			219654			rs181715218-T	rs181715218	0	181715218	intron	0	0.996	3E-6	5.522878745280337		   1.30	[0.76-1.84] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10q25.2	10	113118108	NR	TCF7L2			6934			rs74157220-T	rs74157220	0	74157220	intron	0	0.031	6E-6	5.221848749616356		    .27	[0.15-0.38] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10q26.3	10	130839042	NR	GLRX3 - MIR378C	10539	100422867		      658.66	      123.55	rs7094308-T	rs7094308	0	7094308	Intergenic	1	0.424	6E-6	5.221848749616356		    .10	[0.054-0.136] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	11q13.1	11	65376421	NR	SLC25A45			283130			rs34400381-A	rs34400381	0	34400381	missense	0	0.043	2E-6	5.698970004336018		    .27	[0.16-0.38] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	13q32.1	13	94735863	NR	SOX21-AS1 - BRD7P5	100507533	100129259		       19.92	       21.45	rs184488877-A	rs184488877	0	184488877	Intergenic	1	0.007	2E-6	5.698970004336018		    .89	[-0.18048-0.55648] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	15q21.1	15	45830738	NR	SQRDL - SEMA6D	58472	80031		      139.44	     1353.47	rs35053544-C	rs35053544	0	35053544	Intergenic	1	0.075	8E-7	6.096910013008056		    .19	[0.11-0.26] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p16.1	2	58974894	NR	LINC01122			400955			rs111835151-C	rs111835151	0	111835151	intron	0	0.043	2E-6	5.698970004336018		    .29	[0.17-0.41] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	13q31.3	13	93556396	NR	GPC6			10082			rs190494527-G	rs190494527	0	190494527	intron	0	0.102	7E-6	5.154901959985742		    .18	[0.099-0.251] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	5p13.2	5	35037010	AGXT2	AGXT2			64902			rs37369-T	rs37369	0	37369	missense	0	0.088	1E-40	40		    .47	[0.4-0.54] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	1p22.3	1	85380315	DDAH1	DDAH1			23576			rs1884139-T	rs1884139	0	1884139	intron	0	0.371	1E-18	18		    .18	[0.14-0.22] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	7p22.1	7	7219639	NR	C1GALT1			56913			rs12702595-A	rs12702595	0	12702595	intron	0	0.444	1E-6	5.999999999999999		    .10	[0.06-0.138] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	22q12.3	22	34455673	NR	LARGE-AS1 - ISX	100506195	91464		      704.86	      610.46	rs55794228-T	rs55794228	1	35504497	Intergenic	1	0.739	7E-6	5.154901959985742		    .10	[0.059-0.149] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	1q32.1	1	205743402	NR	NUCKS1			64710			rs188212039-G	rs188212039	0	188212039	intron	0	0.998	5E-6	5.301029995663981		   1.79	[1.02-2.56] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	2q14.3	2	128785193	NR	ISCA1P6 - RPL22P7	100130549	100129819		      265.94	     1154.66	rs11690256-T	rs11690256	0	11690256	Intergenic	1	0.349	2E-6	5.698970004336018		    .10	[0.058-0.14] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	2q22.1	2	140511873	NR	LRP1B			53353			rs183373550-A	rs183373550	0	183373550	intron	0	0.002	7E-6	5.154901959985742		   1.26	[0.71-1.8] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	2q34	2	212432529	NR	ERBB4			2066			rs1505368-A	rs1505368	0	1505368	intron	0	0.509	1E-6	5.999999999999999		    .10	[0.058-0.136] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	3p24.3	3	18540356	NR	LOC101927777			101927777			rs7633075-T	rs7633075	0	7633075	intron	0	0.134	6E-6	5.221848749616356		    .13	[0.076-0.19] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	3q27.3	3	187988099	NR	BCL6 - LPP-AS2	604	339929		      242.37	      163.11	rs184662298-G	rs184662298	0	184662298	Intergenic	1	0.996	2E-6	5.698970004336018		   1.43	[0.85-2.02] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	4p14	4	38159443	NR	MRPS33P2 - LINC01258	359775	101928776		      152.34	      261.22	rs115426111-T	rs115426111	0	115426111	Intergenic	1	0.998	1E-6	5.999999999999999		   1.52	[0.91-2.13] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	6p24.2	6	10921298	NR	SYCP2L			221711			rs190994806-A	rs190994806	0	190994806	intron	0	0.003	3E-6	5.522878745280337		   1.26	[0.73-1.79] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	6p11.1	6	58438253	NR	RBBP4P4 - GAPDHP41	727842	100131935		      317.33	     2280.89	rs4513829-G	rs4513829	0	4513829	Intergenic	1	0.104	6E-6	5.221848749616356		    .18	[0.1-0.26] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	6q16.1	6	95731128	NR	MANEA - KRT18P50	79694	442236		      121.67	      259.97	rs143247165-A	rs143247165	0	143247165	Intergenic	1	0.006	8E-6	5.096910013008055		    .71	[0.4-1.03] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	22q13.33	22	49448640	NR	C22orf34			348645			rs9627735-T	rs9627735	0	9627735		0	0.203	6E-6	5.221848749616356		    .15	[0.085-0.219] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	8p23.3	8	290578	NR	ZNF596 - FAM87A	169270	157693		       43.24	       85.35	rs55680580-A	rs55680580	0	55680580	Intergenic	1	0.043	8E-6	5.096910013008055		    .29	[0.16-0.42] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	9p21.3	9	24720234	NR	IZUMO3 - TUSC1	100129669	286319		      174.34	      956.16	rs10491833-C	rs10491833	0	10491833	Intergenic	1	0.258	4E-6	5.397940008672037		    .11	[0.064-0.158] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	9p21.1	9	31450668	NR	LINC01243 - HMGB3P23	101929620	100288563		       69.18	      192.68	rs148359873-T	rs148359873	0	148359873	Intergenic	1	0.03	1E-6	5.999999999999999		    .36	[0.21-0.51] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	10q26.2	10	128571226	NR	LINC01163 - MGMT	101927381	4255		      253.50	      895.96	rs749141-C	rs749141	0	749141	Intergenic	1	0.076	4E-7	6.397940008672037		    .20	[0.12-0.27] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	11q13.5	11	76754737	NR	GUCY2EP - TSKU	390226	25987		       32.95	       27.58	rs147269019-C	rs147269019	0	147269019	Intergenic	1	0.011	9E-6	5.045757490560675		    .46	[0.26-0.66] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	11q24.1	11	121335740	NR	SC5D - BMPR1APS2	6309	100533800		       22.33	       26.11	rs116875324-T	rs116875324	0	116875324	Intergenic	1	0.05	9E-6	5.045757490560675		    .23	[0.13-0.33] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	13q21.32	13	67997905	NR	OR7E33P - ELL2P3	26640	100533713		       85.79	      291.80	rs7318913-G	rs7318913	0	7318913	Intergenic	1	0.049	4E-6	5.397940008672037		    .24	[0.14-0.34] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	15q21.1	15	45830738	NR	SQRDL - SEMA6D	58472	80031		      139.44	     1353.47	rs35053544-C	rs35053544	0	35053544	Intergenic	1	0.076	6E-6	5.221848749616356		    .17	[0.099-0.247] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	15q23	15	71280615	NR	THSD4			79875			rs76917273-C	rs76917273	0	76917273	intron	0	0.007	5E-6	5.301029995663981		    .59	[0.34-0.84] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	15q26.1	15	92161801	NR	SLCO3A1			28232			rs2238341-G	rs2238341	0	2238341	intron	0	0.239	5E-6	5.301029995663981		    .15	[0.082-0.208] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	16p13.13	16	12503078	NR	SNX29			92017			rs117147010-T	rs117147010	0	117147010	intron	0	0.029	1E-6	5.999999999999999		    .36	[0.21-0.5] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	16q23.3	16	82631228	NR	CDH13			1012			rs139419280-G	rs139419280	0	139419280	intron	0	0.998	8E-6	5.096910013008055		   1.99	[1.11-2.86] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	18p11.31	18	3041399	NR	SNRPCP4 - MYOM1	100310848	8736		       50.09	       25.41	rs78192384-A	rs78192384	0	78192384	Intergenic	1	0.03	7E-6	5.154901959985742		    .27	[0.15-0.39] unit decrease	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	4q21.3	4	86762562	NR	PTPN13			5783			rs181519890-C	rs181519890	0	181519890	intron	0	0.003	6E-6	5.221848749616356		   1.06	[0.60-1.52] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
05/02/2014	24159190	Seppala I	10/24/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/24159190	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (symmetric)	5110 European ancestry individuals	NA	11q13.1	11	65376421	SLC25A45	SLC25A45			283130			rs34400381-A	rs34400381	0	34400381	missense	0	0.043	2E-10	9.698970004336017		    .36	[0.25-0.47] unit increase	Illumina and Affymetrix [10,085,758] (Imputed)	N
04/15/2014	24152035	Goodbourn PT	10/23/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/24152035	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	N/A	1q21.1	1	145707383	PDZK1	PDZK1			5174			rs1797052-?	rs1797052	0	1797052	UTR-5	0	0.0547	8E-9	8.096910013008056		   5.72	[NR] unit increase	Illumina [642,758]	N
04/15/2014	24152035	Goodbourn PT	10/23/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/24152035	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	N/A	2p12	2	78971042	REG3G, REG1B, REG1A, CTNNA2	CYCSP6 - REG3G	360159	130120		      557.95	       54.64	rs11683503-?	rs11683503	0	11683503	Intergenic	1	0.079	1E-7	7		   4.41	[NR] unit increase	Illumina [642,758]	N
04/15/2014	24152035	Goodbourn PT	10/23/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/24152035	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	N/A	2q34	2	214052678	SPAG16	SPAG16			79582			rs1510552-?	rs1510552	0	1510552	intron	0	0.1593	1E-6	5.999999999999999		   3.04	[NR] unit increase	Illumina [642,758]	N
04/15/2014	24152035	Goodbourn PT	10/23/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/24152035	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	N/A	2q37.1	2	233031788	NGEF, NEU2, INPP5D	NEU2			4759			rs2233375-?	rs2233375	0	2233375	nearGene-5	0	0.0992	4E-6	5.397940008672037		   3.63	[NR] unit increase	Illumina [642,758]	N
04/15/2014	24152035	Goodbourn PT	10/23/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/24152035	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	N/A	12q13.2	12	55522996	OR9K2, OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4, OR10P1	OR6C64P			403281			rs12230513-?	rs12230513	0	12230513		0	0.1822	5E-6	5.301029995663981		   2.69	[NR] unit decrease	Illumina [642,758]	N
05/13/2014	24149102	Frampton M	10/22/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24149102	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	3p24.1	3	27723132	EOMES	EOMES			8320			rs3806624-G	rs3806624	0	3806624	nearGene-5	0	0.45	1E-12	12		   1.26	[1.18-1.34] 	Illumina [296,129]	N
05/13/2014	24149102	Frampton M	10/22/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24149102	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6q23.3	6	135093866	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      114.43	       87.45	rs7745098-G	rs7745098	0	7745098	Intergenic	1	0.48	3E-9	8.522878745280337		   1.21	[1.14-1.29] 	Illumina [296,129]	N
05/13/2014	24149102	Frampton M	10/22/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24149102	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	2p16.1	2	60839531	NR	PAPOLG - LINC01185	64895	400957		       37.45	        8.23	rs1432295-G	rs1432295	0	1432295	Intergenic	1	0.4	1E-6	5.999999999999999		   1.24	[NR] 	Illumina [296,129]	N
05/13/2014	24149102	Frampton M	10/22/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24149102	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	10p14	10	8051071	NR	GATA3;GATA3-AS1			2625;399717			rs501764-C	rs501764	0	501764	intron;ncRNA	0	0.19	4E-10	9.397940008672037		   1.39	[NR] 	Illumina [296,129]	N
05/13/2014	24149102	Frampton M	10/22/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24149102	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	8q24.21	8	128180025	NR	MIR1208 - LINC01263	100302281	101927774		       29.84	      225.24	rs2019960-G	rs2019960	0	2019960	Intergenic	1	0.23	6E-10	9.221848749616356		   1.37	[NR] 	Illumina [296,129]	N
05/13/2014	24149102	Frampton M	10/22/2013	Nat Commun	http://www.ncbi.nlm.nih.gov/pubmed/24149102	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	6p21.32	6	32460508	NR	TRNAI25			100189401			rs6903608-G	rs6903608	0	6903608		0	0.27	5E-27	26.30102999566398		   1.62	[NR] 	Illumina [296,129]	N
04/25/2014	24141364	Perez-Andreu V	10/20/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24141364	Inherited GATA3 variants are associated with Ph-like childhood acute lymphoblastic leukemia and risk of relapse.	Acute lymphoblastic leukemia (childhood)	75 Ph-like ALL cases, 436 non Ph-like ALL cases, 6,661 non-ALL controls	781 ALL cases, 171 B-ALL cases, 5,755 non-ALL controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [718,890]	N
04/25/2014	24143882	Gelernter J	10/19/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24143882	Genome-wide association study of opioid dependence: multiple associations mapped to calcium and potassium pathways.	Opioid sensitivity	1,383 European ancestry cases, 996 European ancestry controls, 683 African American cases, 2,635 African Amercian controls	2,116 European ancestry individuals, 4,496 African American individuals	4p14	4	41054699	APBB2	APBB2			323			rs114070671-?	rs114070671	0	114070671	intron	0	0.08	1E-7	7	(AA)	NR	NR	Illumina [988,306]	N
04/25/2014	24143882	Gelernter J	10/19/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24143882	Genome-wide association study of opioid dependence: multiple associations mapped to calcium and potassium pathways.	Opioid sensitivity	1,383 European ancestry cases, 996 European ancestry controls, 683 African American cases, 2,635 African Amercian controls	2,116 European ancestry individuals, 4,496 African American individuals	11p15.1	11	17774564	KCNC1	KCNC1			3746			rs60349741-?	rs60349741	0	60349741	intron	0	0.06	5E-7	6.30102999566398	(AA)	NR	NR	Illumina [988,306]	N
04/25/2014	24143882	Gelernter J	10/19/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24143882	Genome-wide association study of opioid dependence: multiple associations mapped to calcium and potassium pathways.	Opioid sensitivity	1,383 European ancestry cases, 996 European ancestry controls, 683 African American cases, 2,635 African Amercian controls	2,116 European ancestry individuals, 4,496 African American individuals	18q23	18	79864479	KCNG2	KCNG2			26251			rs62103177-?	rs62103177	0	62103177	intron	0	0.06	4E-10	9.397940008672037	(AA)	NR	NR	Illumina [988,306]	N
04/10/2014	24143190	Low SK	10/15/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24143190	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japaneses ancestry controls	2,885 Japanese ancestry cases, 3,395 Japaneses ancestry controls	10q26.13	10	121580797	FGFR2	FGFR2			2263			rs2981578-C	rs2981578	0	2981578	intron	0	0.514	1E-12	12		   1.23	[1.158-1.296] 	Illumina [5,335,291] (imputed)	N
04/10/2014	24143190	Low SK	10/15/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24143190	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japaneses ancestry controls	2,885 Japanese ancestry cases, 3,395 Japaneses ancestry controls	16q12.2	16	52601088	LOC643714, TOX3	CASC16			643714			rs12922061-T	rs12922061	0	12922061	intron	0	0.241	4E-10	9.397940008672037		   1.23	[1.153-1.314] 	Illumina [5,335,291] (imputed)	N
04/10/2014	24143190	Low SK	10/15/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24143190	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japaneses ancestry controls	2,885 Japanese ancestry cases, 3,395 Japaneses ancestry controls	16q12.1	16	52552429	LOC643714, TOX3	CASC16			643714			rs3803662-T	rs3803662	0	3803662	ncRNA	0	0.522	3E-11	10.52287874528034		   1.21	[1.146-1.284] 	Illumina [5,335,291] (imputed)	N
04/10/2014	24143190	Low SK	10/15/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24143190	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japaneses ancestry controls	2,885 Japanese ancestry cases, 3,395 Japaneses ancestry controls	12p13.1	12	14257551	ATF7IP	GNAI2P1 - RPL30P11	2772	100271303		        1.97	       99.31	rs17221259-G	rs17221259	0	17221259	Intergenic	1	0.204	7E-6	5.154901959985742		   1.25	[1.136-1.381] 	Illumina [5,335,291] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	10q26.12	10	121185572	WDR11, FGFR2	LINC01153			101927889			rs3943077-A	rs3943077	0	3943077	ncRNA	0	0.567	3E-14	13.52287874528034		    .07	[0.050-0.090] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	12q13.11	12	48539450	OR8S1, LALBA	OR8S1 - OR5BS1P	341568	390313		       11.35	       20.43	rs11168618-T	rs11168618	0	11168618	Intergenic	1	0.137	1E-7	7		    .06	[0.040-0.080] unit decrease	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	6q24.2	6	142798695	HIVEP2	HIVEP2			3097			rs12211360-A	rs12211360	0	12211360	intron	0	0.966	6E-6	5.221848749616356		    .16	[0.10-0.22] unit decrease	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	16q23.3	16	82628663	CDH13	CDH13			1012			rs4783244-T	rs4783244	0	4783244	intron	0	0.360	7E-165	164.1549019599857		    .33	[0.31-0.35] unit decrease	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	3q27.3	3	186831906	ADIPOQ	RFC4 - ADIPOQ	5984	9370		       25.21	       10.77	rs10937273-A	rs10937273	0	10937273	Intergenic	1	0.404	2E-22	21.69897000433602		    .12	[0.10-0.14] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	19q13.11	19	33398094	PEPD	PEPD			5184			rs889140-A	rs889140	0	889140	intron	0	0.450	4E-12	11.39794000867204		    .08	[0.060-0.100] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	16q23.2	16	81501185	CMIP	CMIP			80790			rs2925979-T	rs2925979	0	2925979	intron	0	0.411	2E-10	9.698970004336017		    .08	[0.060-0.100] unit decrease	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	12q24.31	12	124006982	ZNF664	ZNF664;ZNF664-FAM101A;LOC102723902			144348;100533183;102723902			rs1187415-C	rs1187415	0	1187415	intron;intron;intron	0	0.920	2E-7	6.698970004336019		    .11	[0.071-0.149] unit decrease	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	12q24.31	12	122903375	GPR109A	VPS37B - ABCB9	79720	23457		        7.21	       16.80	rs10847980-T	rs10847980	0	10847980	Intergenic	1	0.771	7E-6	5.154901959985742		    .06	[0.040-0.080] unit decrease	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/26/2014	24105470	Wu Y	10/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24105470	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals	10,252 East Asian ancestry individuals	3q27.3	3	186783859	ADIPOQ	EIF4A2;SNORD2			1974;619567			rs266719-T	rs266719	0	266719	intron;nearGene-5	0	0.096	7E-7	6.154901959985743	(Conditioned on rs10937273)	    .13	[0.071-0.189] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	3p13	3	70879779	FOXP1	HMGB1P36 - FOXP1	100419968	27086		      125.21	       74.94	rs2687201-T	rs2687201	0	2687201	Intergenic	1	0.303	2E-6	5.698970004336018		   1.18	[1.10-1.26] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	5q11.1	5	51339044	NR	RPS10P12 - ISL1	133569	3670		       63.26	       44.08	rs6449586-A	rs6449586	0	6449586	Intergenic	1	0.553	1E-6	5.999999999999999		   1.16	[1.1-1.25] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	7q36.2	7	153574792	NR	ACTR3B - DPP6	57180	1804		      687.08	      173.40	rs11771429-G	rs11771429	0	11771429	Intergenic	1	0.816	7E-6	5.154901959985742		   1.22	[1.12-1.33] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	9q22.32	9	93953746	BARX1	BARX1			56033			rs11789015-A	rs11789015	0	11789015	intron	0	0.717	5E-6	5.301029995663981		   1.18	[1.1-1.27] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	10q23.2	10	86356722	NR	GRID1			2894			rs7904985-T	rs7904985	0	7904985	intron	0	0.29	6E-6	5.221848749616356		   1.17	[1.10-1.26] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	15q21.3	15	57960908	NR	ALDH1A2			8854			rs3784262-A	rs3784262	0	3784262	intron	0	0.54	4E-7	6.397940008672037		   1.18	[1.11-1.25] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	19p13.11	19	18692362	CRTC1	CRTC1			23373			rs10419226-A	rs10419226	0	10419226	intron	0	0.456	6E-8	7.221848749616355		   1.19	[1.12-1.26] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	3p13	3	70879779	FOXP1	HMGB1P36 - FOXP1	100419968	27086		      125.21	       74.94	rs2687201-T	rs2687201	0	2687201	Intergenic	1	0.303	5E-9	8.301029995663981		   1.18	[1.12-1.25] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	3q26.2	3	168007561	NR	HMGN2P26 - GOLIM4	100874470	27333		       48.48	        1.11	rs7632500-C	rs7632500	0	7632500	Intergenic	1	0.038	1E-6	5.999999999999999		   1.37	[1.21-1.55] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	6q11.1	6	61285855	NR	RBBP4P3 - MTRNR2L9	730180	100463487		      411.21	      288.25	rs2342002-T	rs2342002	0	2342002	Intergenic	1	0.214	7E-6	5.154901959985742		   1.15	[1.08-1.23] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	7q36.2	7	153574792	NR	ACTR3B - DPP6	57180	1804		      687.08	      173.40	rs11771429-G	rs11771429	0	11771429	Intergenic	1	0.816	8E-6	5.096910013008055		   1.19	[1.1-1.28] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	9q22.32	9	93953746	BARX1	BARX1			56033			rs11789015-A	rs11789015	0	11789015	intron	0	0.717	1E-9	8.999999999999998		   1.20	[1.14-1.27] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	15q21.3	15	57960908	NR	ALDH1A2			8854			rs3784262-A	rs3784262	0	3784262	intron	0	0.54	7E-7	6.154901959985743		   1.14	[1.09-1.2] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	16q24.1	16	86430089	FOXF1	LINC00917 - FENDRR	732275	400550		       84.41	       44.44	rs2178146-A	rs2178146	0	2178146	Intergenic	1	0.587	1E-6	5.999999999999999		   1.14	[1.09-1.2] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	19p13.11	19	18692362	CRTC1	CRTC1			23373			rs10419226-A	rs10419226	0	10419226	intron	0	0.456	4E-10	9.397940008672037		   1.18	[1.12-1.24] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	19q13.32	19	44738850	NR	CEACAM16 - BCL3	388551	602		       28.14	        3.97	rs2927438-C	rs2927438	0	2927438	Intergenic	1	0.778	2E-6	5.698970004336018		   1.16	[1.1-1.25] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	18q11.2	18	22074176	NR	RNU7-17P - GATA6-AS1	100147765	100128893		       30.76	       92.72	rs4800353-T	rs4800353	0	4800353	Intergenic	1	0.864	3E-7	6.522878745280337		   1.22	[1.14-1.32] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	3p13	3	70879779	FOXP1	HMGB1P36 - FOXP1	100419968	27086		      125.21	       74.94	rs2687201-T	rs2687201	0	2687201	Intergenic	1	0.303	6E-7	6.221848749616355		   1.20	[1.12-1.29] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	4q22.1	4	87478958	NR	SPARCL1			8404			rs4610302-G	rs4610302	0	4610302	intron	0	0.59	4E-6	5.397940008672037		   1.18	[1.1-1.27] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	6q11.1	6	61285855	NR	RBBP4P3 - MTRNR2L9	730180	100463487		      411.21	      288.25	rs2342002-T	rs2342002	0	2342002	Intergenic	1	0.214	9E-7	6.045757490560675		   1.22	[1.13-1.33] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	7p14.1	7	43247240	NR	HECW1;LOC102724911			23072;102724911			rs17172185-T	rs17172185	0	17172185	intron;nearGene-5	0	0.946	5E-6	5.301029995663981		   1.47	[1.25-1.75] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	9q22.32	9	93953746	BARX1	BARX1			56033			rs11789015-A	rs11789015	0	11789015	intron	0	0.717	2E-7	6.698970004336019		   1.23	[1.14-1.33] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	9q22.32	9	94096129	PTPDC1	PTPDC1			138639			rs6479527-C	rs6479527	0	6479527	intron	0	0.511	2E-6	5.698970004336018		   1.18	[1.1-1.27] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	16q24.1	16	86430089	FOXF1	LINC00917 - FENDRR	732275	400550		       84.41	       44.44	rs2178146-A	rs2178146	0	2178146	Intergenic	1	0.587	4E-6	5.397940008672037		   1.18	[1.1-1.27] 	Illumina [922,031]	N
04/10/2014	24121790	Levine DM	10/13/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24121790	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	19p13.11	19	18692362	CRTC1	CRTC1			23373			rs10419226-A	rs10419226	0	10419226	intron	0	0.456	8E-7	6.096910013008056		   1.19	[1.11-1.27] 	Illumina [922,031]	N
04/11/2014	24133439	Jones RM	10/11/2013	Front Hum Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/24133439	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adults	NR	4q31.3	4	150180520	DCLK2	DCLK2			166614			rs11947645-A	rs11947645	0	11947645	intron	0	NR	1E-6	5.999999999999999		   5.33	[3.17-7.48] unit increase	Illumina [2,462,046] (Imputed)	N
04/11/2014	24133439	Jones RM	10/11/2013	Front Hum Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/24133439	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adults	NR	16q12.1	16	49108595	N4BP1, CBLN1	KLF8P1 - CBLN1	100128777	869		      376.20	      169.32	rs16946931-C	rs16946931	0	16946931	Intergenic	1	NR	2E-6	5.698970004336018		   1.68	[1-2.37] unit increase	Illumina [2,462,046] (Imputed)	N
04/11/2014	24133439	Jones RM	10/11/2013	Front Hum Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/24133439	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adults	NR	6q27	6	167143546	CCR6, GPR31	CCR6 - GPR31	1235	2853		        4.41	       13.33	rs11575088-A	rs11575088	0	11575088	Intergenic	1	NR	3E-6	5.522878745280337		   1.62	[0.94-2.30] unit increase	Illumina [2,462,046] (Imputed)	N
04/11/2014	24133439	Jones RM	10/11/2013	Front Hum Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/24133439	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adults	NR	10q24.32	10	102448042	MIR146B, LOC100505761	RPARP-AS1			100505761			rs927821-A	rs927821	0	927821	nearGene-5	0	NR	3E-6	5.522878745280337		   1.70	[0.99-2.42] unit increase	Illumina [2,462,046] (Imputed)	N
04/11/2014	24133439	Jones RM	10/11/2013	Front Hum Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/24133439	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adults	NR	12q23.3	12	106835927	RIC8B	RIC8B			55188			rs10444533-C	rs10444533	0	10444533	intron	0	NR	4E-6	5.397940008672037		   1.46	[0.84-2.07] unit increase	Illumina [2,462,046] (Imputed)	N
04/11/2014	24133439	Jones RM	10/11/2013	Front Hum Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/24133439	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adults	NR	16q24.3	16	88901029	CBFA2T3	CBFA2T3			863			rs533581-C	rs533581	0	533581	intron	0	NR	8E-6	5.096910013008055		   1.36	[0.77-1.96] unit increase	Illumina [2,462,046] (Imputed)	N
04/10/2014	24114350	Zhang M	10/11/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24114350	A genome-wide association study of severe teenage acne in European Americans.	Acne (severe teenage)	81 European ancestry cases, 847 European ancestry controls	134 European ancestry cases, 1,258 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,165,857] (imputed)	N
04/25/2014	24064335	Pei YF	10/08/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24064335	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Body mass index	8,463 European ancestry individuals, 7,478 African American individuals, 3,348 Hispanic individuals, 1,624 Han Chinese ancestry individuals	4,979 European ancestry individuals, 2,740 Han Chinese ancestry individuals	18q21.32	18	60161902	MC4R	RPS3AP49 - MC4R	400652	4160		       11.50	      209.43	rs6567160-C	rs6567160	0	6567160	Intergenic	1	NR	8E-19	18.09691001300805		    .09	[0.070-0.110] kg/m2 increase	Affymetrix and Illumina [4,325,550] (Imputed)	N
04/25/2014	24064335	Pei YF	10/08/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24064335	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Body mass index	8,463 European ancestry individuals, 7,478 African American individuals, 3,348 Hispanic individuals, 1,624 Han Chinese ancestry individuals	4,979 European ancestry individuals, 2,740 Han Chinese ancestry individuals	16q12.2	16	53777876	FTO	FTO			79068			rs62033400-G	rs62033400	0	62033400	intron	0	NR	2E-14	13.69897000433602		    .08	[0.060-0.100] kg/m2 increase	Affymetrix and Illumina [4,325,550] (Imputed)	N
04/25/2014	24064335	Pei YF	10/08/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24064335	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Body mass index	8,463 European ancestry individuals, 7,478 African American individuals, 3,348 Hispanic individuals, 1,624 Han Chinese ancestry individuals	4,979 European ancestry individuals, 2,740 Han Chinese ancestry individuals	2p25.3	2	622531	TMEM18	FAM150B - TMEM18	285016	129787		      333.66	       45.44	rs939583-C	rs939583	0	939583	Intergenic	1	NR	1E-7	7		    .07	[0.050-0.090] kg/m2 decrease	Affymetrix and Illumina [4,325,550] (Imputed)	N
04/25/2014	24064335	Pei YF	10/08/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24064335	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Fat body mass	6,433 European ancestry individuals, 709 African American individuals, 408 Hispanic individuals, 1,622 Han Chinese ancestry individuals	4,967 European ancestry individuals, 2,740 Han Chinese ancestry individuals	18q21.32	18	60161902	MC4R	RPS3AP49 - MC4R	400652	4160		       11.50	      209.43	rs6567160-C	rs6567160	0	6567160	Intergenic	1	NR	3E-11	10.52287874528034		    .09	[0.07-0.11] unit increase	Affymetrix and Illumina [4,325,550] (Imputed)	N
04/25/2014	24064335	Pei YF	10/08/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24064335	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Fat body mass	6,433 European ancestry individuals, 709 African American individuals, 408 Hispanic individuals, 1,622 Han Chinese ancestry individuals	4,967 European ancestry individuals, 2,740 Han Chinese ancestry individuals	1q21.3	1	150755063	CTSS	CTSS			1520			rs2230061-A	rs2230061	0	2230061	missense	0	NR	4E-8	7.397940008672037	(Adjusted by Lean body mass)	    .06	[0.040-0.080] unit decrease	Affymetrix and Illumina [4,325,550] (Imputed)	N
04/08/2014	24216480	Song YQ	10/08/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/24216480	Lumbar disc degeneration is linked to a carbohydrate sulfotransferase 3 variant.	Disc degeneration (lumbar)	366 Japanese ancestry cases, 3,331 Japanese ancestry controls	1,628 East Asian ancestry cases, 17,469 East Asian ancestry controls, 399 European ancestry cases, 5,035 European ancestry control	10q22.1	10	72018509	CHST3	CHST3 - SPOCK2	9469	9806		        4.95	       40.53	rs1245582-?	rs1245582	0	1245582	Intergenic	1	0.44	1E-6	5.999999999999999	(East Asians)	NR	NR	Illumina [464,775]	N
04/08/2014	24216480	Song YQ	10/08/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/24216480	Lumbar disc degeneration is linked to a carbohydrate sulfotransferase 3 variant.	Disc degeneration (lumbar)	366 Japanese ancestry cases, 3,331 Japanese ancestry controls	1,628 East Asian ancestry cases, 17,469 East Asian ancestry controls, 399 European ancestry cases, 5,035 European ancestry control	10q22.1	10	72018509	CHST3	CHST3 - SPOCK2	9469	9806		        4.95	       40.53	rs1245582-?	rs1245582	0	1245582	Intergenic	1	0.44	4E-8	7.397940008672037		   1.20	[1.13-1.29] 	Illumina [464,775]	N
05/01/2014	24101674	Hanson RL	10/07/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/24101674	A genome-wide association study in American Indians implicates DNER as a susceptibility locus for type 2 diabetes.	Type 2 diabetes	278 American Indian ancestry young-onset cases, 129 American Indian ancestry cases, and 424 American Indian ancestry controls from 514 sibships	1,273 American Indian ancestry cases, 1,635 American Indian ancestry controls, 793 cases, 3,133 controls	2q36.3	2	229657682	DNER	DNER			92737			rs1861612-T	rs1861612	0	1861612	intron	0	0.64	7E-8	7.154901959985742		   1.29	[NR] 	Affymetrix [453,654]	N
05/01/2014	24101674	Hanson RL	10/07/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/24101674	A genome-wide association study in American Indians implicates DNER as a susceptibility locus for type 2 diabetes.	Type 2 diabetes	278 American Indian ancestry young-onset cases, 129 American Indian ancestry cases, and 424 American Indian ancestry controls from 514 sibships	1,273 American Indian ancestry cases, 1,635 American Indian ancestry controls, 793 cases, 3,133 controls	11p15.4	11	2810311	KCNQ1	KCNQ1			3784			rs8181588-A	rs8181588	0	8181588	intron	0	0.48	5E-9	8.301029995663981		   1.30	[NR] 	Affymetrix [453,654]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	22q13.32	22	48345986	Intergenic	MIR3201 - FAM19A5	100422916	25817		       71.57	      143.47	rs4407-?	rs4407	0	4407	Intergenic	1	NR	2E-6	5.698970004336018	(Endometroid subtype)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	2q36.3	2	228777706	Intergenic	LOC101928765			101928765			rs11679180-?	rs11679180	0	11679180	intron	0	NR	3E-6	5.522878745280337	(European, All type I)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	10q26.2	10	126158100	ADAM12	ADAM12			8038			rs12778749-?	rs12778749	0	12778749	intron	0	NR	9E-6	5.045757490560675	(European, All type I)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	9p21.1	9	28587996	LINGO2	LINGO2			158038			rs2891316-?	rs2891316	0	2891316	intron	0	NR	9E-6	5.045757490560675	(European, All type I)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	6q22.31	6	125701456	LOC643623	LOC643623			643623			rs1777220-?	rs1777220	0	1777220	intron	0	NR	2E-6	5.698970004336018	(European, All type I)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	22q13.32	22	48345986	Intergenic	MIR3201 - FAM19A5	100422916	25817		       71.57	      143.47	rs4407-?	rs4407	0	4407	Intergenic	1	NR	3E-6	5.522878745280337	(European, Endometroid subtype)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	10q26.2	10	126158100	ADAM12	ADAM12			8038			rs12778749-?	rs12778749	0	12778749	intron	0	NR	8E-6	5.096910013008055	(European, Endometroid subtype)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	6q27	6	166922663	RNASET2, LOC100131869	RPS6KA2-AS1 - RNASET2	100861523	8635		       17.59	        6.84	rs9459805-?	rs9459805	0	9459805	Intergenic	1	NR	8E-6	5.096910013008055	(European, Endometroid subtype)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	3p14.3	3	54983722	CACNA2D3	CACNA2D3			55799			rs3773582-?	rs3773582	0	3773582	intron	0	NR	8E-6	5.096910013008055	(European, Endometroid subtype)	NR	NR	Illumina [873,935]	N
05/12/2014	24096698	De Vivo I	10/06/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24096698	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	2,695 European ancestry cases, 2,777 European ancestry controls	2,261 cases,  3,357 controls 	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [873,935]	N
04/04/2014	24097066	Li Y	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097066	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23.	Sjögren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	7q11.23	7	74711703	GTF2I, GTF2IRD1	GTF2I;LOC101926943			2969;101926943			rs117026326-T	rs117026326	0	117026326	intron;intron	0	0.1501	1E-53	53		   2.20	[1.99-2.42] 	Affymetrix [556,134]	N
04/04/2014	24097066	Li Y	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097066	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23.	Sjögren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	2q32.3	2	191071078	STAT4	STAT4			6775			rs10168266-T	rs10168266	0	10168266	intron	0	0.3357	2E-17	16.69897000433602		   1.44	[1.32-1.57] 	Affymetrix [556,134]	N
04/04/2014	24097066	Li Y	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097066	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23.	Sjögren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6q23.3	6	137874586	TNFAIP3	TNFAIP3			7128			rs5029939-G	rs5029939	0	5029939	intron	0	0.0445	8E-9	8.096910013008056		   1.67	[1.40-1.99] 	Affymetrix [556,134]	N
04/04/2014	24097066	Li Y	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097066	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23.	Sjögren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	6	32623176	HLA-DRB1, HLA-DQA1	TRNAI25			100189401			rs9271588-T	rs9271588	0	9271588		0	0.532	9E-37	36.04575749056067		   1.75	[1.59-1.89] 	Affymetrix [556,134]	N
04/04/2014	24097066	Li Y	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097066	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23.	Sjögren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	6p21.32	6	33104395	HLA-DPB1, COL11A2	TRNAI25			100189401			rs4282438-G	rs4282438	0	4282438		0	0.3546	9E-25	24.04575749056067		   1.58	[1.45-1.72] 	Affymetrix [556,134]	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	9q31.1	9	104902020	ABCA1	ABCA1			19			rs1883025-T	rs1883025	0	1883025	intron	0	0.25	6E-53	52.22184874961636		    .07	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q31.1	2	168973645	ABCB11	ABCB11			8647			rs2287623-G	rs2287623	0	2287623	intron	0	0.41	4E-12	11.39794000867204		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2p21	2	43845437	ABCG5, ABCG8	ABCG8			64241			rs4299376-G	rs4299376	0	4299376	intron	0	0.31	3E-73	72.52287874528032		    .08	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	9q34.2	9	133279427	ABO	ABO - SURF6	28	6838		        4.21	       51.28	rs9411489-T	rs9411489	1	635634	Intergenic	1	0.21	3E-35	34.52287874528033		    .07	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p31.3	1	62560271	ANGPTL3	DOCK7			85440			rs2131925-G	rs2131925	0	2131925	intron	0	0.34	4E-80	79.39794000867202		    .08	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	11	116778201	APOA1	ZPR1			8882			rs964184-C	rs964184	0	964184	intron	0	0.84	3E-55	54.52287874528033		    .12	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2p24.1	2	21041028	APOB	APOB			338			rs1367117-A	rs1367117	0	1367117	missense	0	0.32	3E-139	138.5228787452803		    .10	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.32	19	44919689	APOE	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.19	1E-149	149		    .20	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.12	1	23439740	ASAP3	ASAP3			55616			rs1077514-C	rs1077514	0	1077514	intron	0	0.15	6E-9	8.221848749616356		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.12	12	111634620	BRAP	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-G	rs11065987	0	11065987	Intergenic	1	0.41	2E-16	15.69897000433602		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.31	6	34578783	C6orf106	TRNAI25			100189401			rs2814982-T	rs2814982	0	2814982		0	0.12	4E-15	14.39794000867204		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.32	4E-31	30.39794000867203		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.11	19	19296909	CILP2	SUGP1			57794			rs10401969-C	rs10401969	0	10401969	intron	0	0.09	4E-77	76.39794000867202		    .14	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	3p22.3	3	32491518	CMTM6	CMTM6			54918			rs7640978-T	rs7640978	0	7640978	intron	0	0.09	2E-8	7.698970004336018		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	5q23.2	5	123519722	CSNK1G3	CSNK1G3			1456			rs4530754-G	rs4530754	0	4530754	intron	0	0.46	2E-9	8.698970004336019		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q12.1	8	58476006	CYP7A1	UBXN2B - CYP7A1	137886	1581		       24.51	       14.17	rs2081687-T	rs2081687	0	2081687	Intergenic	1	0.36	9E-12	11.04575749056067		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	17p13.1	17	7188331	DLG4	ASGR1 - DLG4	432	1742		        8.77	        1.56	rs314253-C	rs314253	0	314253	Intergenic	1	0.37	3E-10	9.522878745280336		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.3	7	21567734	DNAH11	DNAH11			8701			rs12670798-C	rs12670798	0	12670798	intron	0	0.25	1E-16	16		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q11.22	20	35564866	ERGIC3	FER1L4			80307			rs2277862-T	rs2277862	0	2277862	ncRNA	0	0.15	5E-11	10.30102999566398		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p22.1	1	92543881	EVI5	EVI5			7813			rs7515577-C	rs7515577	0	7515577	intron	0	0.23	2E-8	7.698970004336018		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	11	61802358	FADS1, FADS2, FADS3	FADS1			3992			rs174546-T	rs174546	0	174546	UTR-3	0	0.36	3E-37	36.52287874528034		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q33.2	2	202667581	FAM117B	FAM117B			150864			rs11694172-G	rs11694172	0	11694172	intron	0	0.25	2E-9	8.698970004336019		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.33	19	48703160	FLJ36070	FUT2			2524			rs492602-G	rs492602	0	492602	cds-synon	0	0.47	1E-16	16		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.1	6	115991730	FRK	FRK			2444			rs9488822-T	rs9488822	0	9488822	intron	0	0.36	1E-9	8.999999999999998		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.39	3E-42	41.52287874528033		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	10q25.2	10	112174128	GPAM	GPAM			57678			rs2255141-A	rs2255141	0	2255141	intron	0	0.3	7E-16	15.15490195998574		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p22.3	7	1044141	GPR146	C7orf50			84310			rs1997243-G	rs1997243	0	1997243	intron	0	0.16	3E-10	9.522878745280336		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6q23.3	6	135090090	HBS1L	MIR3662 - MYB	100500880	4602		      110.66	       91.23	rs9376090-C	rs9376090	0	9376090	Intergenic	1	0.28	3E-9	8.522878745280337		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.07	2E-12	11.69897000433602		    .06	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	6	32444658	HLA	HLA-DRA			3122			rs3177928-A	rs3177928	0	3177928	UTR-3	0	0.17	1E-21	21		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	5q13.3	5	75360714	HMGCR	HMGCR			3156			rs12916-C	rs12916	0	12916	UTR-3	0	0.4	5E-74	73.30102999566397		    .68	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	12	120978847	HNF1A	HNF1A			6927			rs1169288-C	rs1169288	0	1169288	missense	0	0.34	4E-17	16.39794000867203		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	20	44413724	HNF4A	HNF4A			3172			rs1800961-T	rs1800961	0	1800961	missense	0	0.05	1E-24	24		    .11	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	16q22.2	16	72074194	HPR	HPR;TXNL4B			3250;54957			rs2000999-A	rs2000999	0	2000999	intron;intron	0	0.2	7E-41	40.15490195998574		    .06	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q14.2[rs10490626]; 2q14.2[rs17526895]			INSIG2	 - 						rs10490626-A	rs10490626, rs17526895					0.08	6E-9			    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.3	1	234722850	IRF2BP2	LINC01132			100506810			rs514230-A	rs514230	0	514230	nearGene-5	0	0.48	5E-14	13.30102999566398		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.2	6	39283061	KCNK17	TRNAI25			100189401			rs2758886-A	rs2758886	0	2758886		0	0.3	3E-8	7.522878745280337		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.12	5E-202	201.301029995664		    .19	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	1	25449242	LDLRAP1	TMEM57			55219			rs12027135-A	rs12027135	0	12027135	intron	0	0.46	5E-12	11.30102999566398		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-A	rs1532085	0	1532085	intron	0	0.40	7E-47	46.15490195998574		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	18q21.1	18	49634583	LIPG	LIPG - SMUG1P1	9388	100129143		       41.68	       15.77	rs7241918-G	rs7241918	0	7241918	Intergenic	1	0.19	4E-18	17.39794000867204		    .06	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6q25.3	6	160157828	LPA	SLC22A1			6580			rs1564348-C	rs1564348	0	1564348	intron	0	0.18	3E-23	22.52287874528034		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	4p16.3	4	3471412	LRPAP1	DOK7			285489			rs6831256-G	rs6831256	0	6831256	intron	0	0.42	1E-10	10		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	20	40462847	MAFB	HSPE1P1 - MAFB	140895	9935		      529.61	      223.00	rs2902940-G	rs2902940	0	2902940	Intergenic	1	0.3	9E-10	9.045757490560675		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	10q11.21	10	45517829	MARCH8, ALOX5	MARCH8			220972			rs970548-C	rs970548	0	970548	intron	0	0.26	8E-9	8.096910013008056		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.2	7	25952206	MIR148A	MIR148A - NFE2L3	406940	9603		        2.22	      200.02	rs4722551-C	rs4722551	0	4722551	Intergenic	1	0.2	7E-9	8.154901959985743		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1q41	1	220800221	MOSC1	MARC1			64757			rs2642442-C	rs2642442	0	2642442	intron	0	0.33	3E-11	10.52287874528034		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.3	6	16127176	MYLIP	MYLIP			29116			rs3757354-T	rs3757354	0	3757354	nearGene-5	0	0.24	2E-15	14.69897000433602		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8p22	8	18415371	NAT2	NAT2 - PSD3	10	23362		       14.16	      111.93	rs1495741-G	rs1495741	0	1495741	Intergenic	1	0.26	3E-8	7.522878745280337		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	7p13	7	44539581	NPC1L1	NPC1L1			29881			rs2072183-C	rs2072183	0	2072183	cds-synon	0	0.29	4E-15	14.39794000867204		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	17q21.32	17	47347749	OSBPL7	EFCAB13			124989			rs7206971-A	rs7206971	0	7206971	intron	0	0.49	1E-7	7		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p32.3	1	55038977	PCSK9	PCSK9			255738			rs2479409-G	rs2479409	0	2479409	nearGene-5	0	0.32	2E-39	38.69897000433601		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	12p13.31	12	8929985	PHC1, A2ML1	PHC1			1911			rs4883201-G	rs4883201	0	4883201	intron	0	0.12	2E-9	8.698970004336019		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	11	118615352	PHLDB1	PHLDB1			23187			rs11603023-T	rs11603023	0	11603023	intron	0	0.42	1E-8	8		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.3	8	143969375	PLEC1	PLEC			5339			rs11136341-G	rs11136341	0	11136341	intron	0	0.40	6E-9	8.221848749616356		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	22q13.31	22	46231706	PPARA	PPARA			5465			rs4253772-T	rs4253772	0	4253772	intron	0	0.11	1E-8	8		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	8	9325848	PPP1R3B	LOC157273			157273			rs9987289-A	rs9987289	0	9987289	intron	0	0.10	2E-36	35.69897000433601		    .08	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	3p14.3	3	58395560	PXK	PXK			54899			rs13315871-A	rs13315871	0	13315871	intron	0	0.1	4E-8	7.397940008672037		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q21.3	2	135080336	RAB3GAP1	RAB3GAP1			22930			rs7570971-A	rs7570971	0	7570971	intron	0	0.35	1E-13	13		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	3p25.2	3	12587421	RAF1	RAF1			5894			rs2290159-C	rs2290159	0	2290159	intron	0	0.23	2E-9	8.698970004336019		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p13.3	1	109275684	SORT1	CELSR2			1952			rs629301-G	rs629301	0	629301	UTR-3	0	0.24	2E-170	169.698970004336		    .13	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q11.23	8	54509054	SOX17	TRMT112P7 - SEC11B	100287567	157708		       29.06	       13.44	rs10102164-A	rs10102164	0	10102164	Intergenic	1	0.21	5E-11	10.30102999566398		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11p15.1	11	18611437	SPTY2D1	SPTY2D1			144108			rs10128711-T	rs10128711	0	10128711	intron	0	0.3	1E-11	11		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.2	11	126374057	ST3GAL4	ST3GAL4			6484			rs11220462-A	rs11220462	0	11220462	intron	0	0.14	6E-15	14.22184874961635		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	5q33.3	5	156963286	TIMD4	TIMD4			91937			rs6882076-T	rs6882076	0	6882076	nearGene-5	0	0.36	5E-41	40.30102999566398		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	22q12.3	22	35315105	TOM1	TOM1			10043			rs138777-A	rs138777	0	138777	intron	0	0.36	5E-8	7.30102999566398		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	20	41043978	TOP1	TOP1			7150			rs6029526-A	rs6029526	0	6029526	intron	0	0.47	1E-16	16		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.47	2E-65	64.69897000433602		    .06	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	9p22.3	9	15305380	TTC39B	TTC39B			158219			rs581080-G	rs581080	0	581080	intron	0	0.21	1E-13	13		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.1	11	122651667	UBASH3B	GLULP3 - UBASH3B	401708	84959		       37.10	        4.02	rs7941030-C	rs7941030	0	7941030	Intergenic	1	0.39	2E-14	13.69897000433602		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q37.1	2	233770738	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs11563251-T	rs11563251	0	11563251	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.12	1E-9	8.999999999999998		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	10p13	10	17218291	VIM, CUBN	VIM-AS1			100507347			rs10904908-G	rs10904908	0	10904908	intron	0	0.43	3E-11	10.52287874528034		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	9p24.2	9	2640759	VLDLR	VLDLR			7436			rs3780181-G	rs3780181	0	3780181	intron	0	0.08	7E-10	9.154901959985741		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	9q31.1	9	104902020	ABCA1	ABCA1			19			rs1883025-T	rs1883025	0	1883025	intron	0	0.25	2E-65	64.69897000433602		    .07	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q24.2	17	68879153	ABCA8	ABCA8			10351			rs4148008-G	rs4148008	0	4148008	intron	0	0.33	1E-12	12		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3q22.1	3	132444356	ACAD11	DNAJC13			23317			rs17404153-T	rs17404153	0	17404153	intron	0	0.14	5E-9	8.301029995663981		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4q23	4	99093654	ADH5	LOC100507053			100507053			rs2602836-A	rs2602836	0	2602836	intron	0	0.44	5E-8	7.30102999566398		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11p15.4	11	10367235	AMPD3	CAND1.11			100130460			rs2923084-G	rs2923084	0	2923084	intron	0	0.18	5E-8	7.30102999566398		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q25.2	1	178546177	ANGPTL1	C1orf220			400798			rs4650994-G	rs4650994	0	4650994	intron	0	0.49	7E-9	8.154901959985743		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	19	8368312	ANGPTL4	ANGPTL4			51129			rs7255436-C	rs7255436	0	7255436	intron	0	0.47	2E-8	7.698970004336018		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	19	11236817	ANGPTL8	DOCK6			57572			rs737337-C	rs737337	0	737337	cds-synon	0	0.11	5E-17	16.30102999566398		    .06	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	11	116778201	APOA1	ZPR1			8882			rs964184-C	rs964184	0	964184	intron	0	0.84	6E-48	47.22184874961635		    .11	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.32	19	44919689	APOE	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.19	2E-21	20.69897000433602		    .07	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q11.2	5	54002195	ARL15	ARL15			54622			rs6450176-A	rs6450176	0	6450176	intron	0	0.26	7E-10	9.154901959985741		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p25.3	3	11358775	ATG7	ATG7			10533			rs2606736-C	rs2606736	0	2606736	intron	0	0.39	5E-8	7.30102999566398		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4p15.2	4	26061368	C4orf52	SMIM20 - RBPJ	389203	3516		      131.49	      102.13	rs10019888-G	rs10019888	0	10019888	Intergenic	1	0.18	5E-8	7.30102999566398		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.32	1E-769	769		    .24	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q24.1	6	139508529	CITED2	CITED2 - ATP5F1P6	10370	645440		      133.88	      105.91	rs605066-C	rs605066	0	605066	Intergenic	1	0.42	3E-8	7.522878745280337		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q23.2	16	81501185	CMIP	CMIP			80790			rs2925979-T	rs2925979	0	2925979	intron	0	0.31	1E-19	19		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q24.3	2	164684290	COBLL1	COBLL1			22837			rs12328675-C	rs12328675	0	12328675	UTR-3	0	0.13	2E-15	14.69897000433602		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q34	2	210675783	CPS1	CPS1			1373			rs1047891-A	rs1047891	0	1047891	missense	0	0.33	9E-10	9.045757490560675		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p22.1	7	6409641	DAGLB	DAGLB			221955			rs702485-G	rs702485	0	702485	UTR-3	0	0.45	6E-12	11.22184874961635		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	11	61802358	FADS1, FADS2, FADS3	FADS1			3992			rs174546-T	rs174546	0	174546	UTR-3	0	0.36	8E-28	27.09691001300805		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4q22.1	4	88820118	FAM13A	FAM13A			10144			rs3822072-A	rs3822072	0	3822072	intron	0	0.46	4E-12	11.39794000867204		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q12.2	16	53775335	FTO	FTO			79068			rs1121980-A	rs1121980	0	1121980	intron	0	0.43	7E-9	8.154901959985743		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.13	1	230159944	GALNT2	GALNT2			2590			rs4846914-G	rs4846914	0	4846914	intron	0	0.41	4E-41	40.39794000867204		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3q13.33	3	119841759	GSK3B	GSK3B			2932			rs6805251-T	rs6805251	0	6805251	intron	0	0.39	1E-8	8		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.41	19	51820963	HAS1	FPR3			2359			rs17695224-A	rs17695224	0	17695224	intron	0	0.26	2E-13	12.69897000433602		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q23.1	1	156730859	HDGF, PMVK	RRNAD1			51093			rs12145743-G	rs12145743	0	12145743	intron	0	0.34	2E-8	7.698970004336018		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	20	44413724	HNF4A	HNF4A			3172			rs1800961-T	rs1800961	0	1800961	missense	0	0.05	2E-34	33.69897000433602		    .13	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p12.2	7	50266267	IKZF1	C7orf72 - IKZF1	100130988	10320		      107.01	       38.52	rs4917014-G	rs4917014	0	4917014	Intergenic	1	0.32	1E-8	8		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q36.3	2	226235982	IRS1	NYAP2 - MIR5702	57624	100847053		      581.96	      422.73	rs2972146-G	rs2972146	0	2972146	Intergenic	1	0.37	2E-17	16.69897000433602		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q13.1	11	65623846	KAT5	PCNXL3			399909			rs12801636-A	rs12801636	0	12801636	intron	0	0.23	3E-8	7.522878745280337		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7q32.3	7	130748625	KLF14	KLF14 - MIR29A	136259	407021		       14.59	      128.12	rs4731702-T	rs4731702	0	4731702	Intergenic	1	0.49	5E-17	16.30102999566398		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	15q22.2	15	63104668	LACTB	TPM1 - LACTB	7168	114294		       32.75	       17.13	rs2652834-A	rs2652834	0	2652834	Intergenic	1	0.21	4E-11	10.39794000867204		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q22.1	16	67894139	LCAT	PSKH1			5681			rs16942887-A	rs16942887	0	16942887	intron	0	0.14	8E-54	53.09691001300806		    .08	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.42	19	54288907	LILRA3	MIR4752 - LILRA5	100616171	353514		        6.73	       18.16	rs386000-C	rs386000	0	386000	Intergenic	1	0.26	3E-23	22.52287874528034		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-A	rs1532085	0	1532085	intron	0	0.4	1E-188	188		    .11	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	18q21.1	18	49634583	LIPG	LIPG - SMUG1P1	9388	100129143		       41.68	       15.77	rs7241918-G	rs7241918	0	7241918	Intergenic	1	0.19	1E-44	44		    .09	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-G	rs12678919	0	12678919	Intergenic	1	0.13	1E-149	149		    .16	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q13.3	12	57398797	LRP1	R3HDM2			22864			rs11613352-T	rs11613352	0	11613352	intron	0	0.26	2E-13	12.69897000433602		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11p11.2	11	46721697	LRP4	F2			2147			rs3136441-C	rs3136441	0	3136441	intron	0	0.18	7E-29	28.15490195998574		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11p11.2	11	46721697	LRP4	F2			2147			rs3136441-C	rs3136441	0	3136441	intron	0	0.18	7E-29	28.15490195998574		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	10q11.21	10	45517829	MARCH8, ALOX5	MARCH8			220972			rs970548-C	rs970548	0	970548	intron	0	0.26	2E-10	9.698970004336017		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	18q21.32	18	60181790	MC4R	RPS3AP49 - MC4R	400652	4160		       31.38	      189.54	rs12967135-A	rs12967135	0	12967135	Intergenic	1	0.25	4E-8	7.397940008672037		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7q11.23	7	73568544	MLXIPL	TBL2			26608			rs17145738-T	rs17145738	0	17145738	nearGene-3	0	0.13	5E-13	12.30102999566398		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q13.5	11	75743976	MOGAT2, DGAT2	MOGAT2 - DGAT2	80168	84649		       12.69	       24.76	rs499974-A	rs499974	0	499974	Intergenic	1	0.19	1E-8	8		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.11	12	109562388	MVK	MMAB			326625			rs7134594-C	rs7134594	0	7134594	intron	0	0.48	2E-13	12.69897000433602		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11p11.12	11	54607190	OR4C46	OR4C46 - OR4C7P	119749	79294		        3.19	       27.74	rs11246602-C	rs11246602	0	11246602	Intergenic	1	0.15	2E-10	9.698970004336017		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p34.3	1	39562508	PABPC4	PABPC4			8761			rs4660293-G	rs4660293	0	4660293	intron	0	0.24	3E-18	17.52287874528034		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12p12.2	12	20320824	PDE3A	TCP1P3 - PDE3A	400013	5139		      377.72	       47.26	rs7134375-A	rs7134375	0	7134375	Intergenic	1	0.43	1E-8	8		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.11	19	33408159	PEPD	PEPD			5184			rs731839-G	rs731839	0	731839	intron	0	0.35	3E-9	8.522878745280337		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q25.3	17	78407903	PGS1	PGS1			9489			rs4129767-G	rs4129767	0	4129767	intron	0	0.48	2E-11	10.69897000433602		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	1	26811902	PIGV, NR0B2	PIGV - ZDHHC18	55650	84243		       13.50	       14.81	rs12748152-T	rs12748152	0	12748152	Intergenic	1	0.09	1E-15	15		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	20	45925376	PLTP	PLTP - PCIF1	5360	63935		       13.01	        9.30	rs6065906-C	rs6065906	0	6065906	Intergenic	1	0.19	5E-40	39.30102999566397		    .06	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	8	9325848	PPP1R3B	LOC157273			157273			rs9987289-A	rs9987289	0	9987289	intron	0	0.1	2E-41	40.69897000433602		    .08	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p21.31	3	50091966	RBM5	RBM5			10181			rs2013208-T	rs2013208	0	2013208	intron	0	0.5	9E-12	11.04575749056067		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.33	6	127114919	RSPO3	RPS4XP9 - RSPO3	442257	84870		      431.01	        3.78	rs1936800-C	rs1936800	0	1936800	Intergenic	1	0.49	3E-10	9.522878745280336		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	12	123311691	SBNO1	SBNO1			55206			rs4759375-T	rs4759375	0	4759375	intron	0	0.08	3E-8	7.522878745280337		    .06	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	12	124777047	SCARB1	MIR6880 - SCARB1	102466204	949		      439.81	         .58	rs838880-C	rs838880	0	838880	Intergenic	1	0.34	6E-32	31.22184874961635		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p21.31	3	47019693	SETD2	SETD2			29072			rs2290547-A	rs2290547	0	2290547	intron	0	0.2	4E-9	8.397940008672036		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4q24	4	102267552	SLC39A8	SLC39A8			64116			rs13107325-T	rs13107325	0	13107325	missense	0	0.08	1E-15	15		    .07	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p21.1	7	17879635	SNX13	SNX13			23161			rs4142995-T	rs4142995	0	4142995	intron	0	0.38	9E-12	11.04575749056067		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p21.1	3	52498102	STAB1	STAB1			23166			rs13326165-A	rs13326165	0	13326165	intron	0	0.21	9E-11	10.04575749056067		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q12	17	39657603	STARD3	STARD3			10948			rs11869286-G	rs11869286	0	11869286	intron	0	0.35	3E-17	16.52287874528034		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7q36.1	7	150832361	TMEM176A	AOC1			26			rs17173637-C	rs17173637	0	17173637	intron	0	0.12	2E-8	7.698970004336018		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.47	3E-29	28.52287874528033		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q23.3	8	115586972	TRPS1	TRPS1			7227			rs2293889-T	rs2293889	0	2293889	intron	0	0.41	4E-17	16.39794000867203		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	9p22.3	9	15305380	TTC39B	TTC39B			158219			rs581080-G	rs581080	0	581080	intron	0	0.21	1E-19	19		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.1	11	122651667	UBASH3B	GLULP3 - UBASH3B	401708	84959		       37.10	        4.02	rs7941030-C	rs7941030	0	7941030	Intergenic	1	0.39	1E-14	14		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	22q11.21	22	21577779	UBE2L3	UBE2L3			7332			rs181362-T	rs181362	0	181362	intron	0	0.23	4E-18	17.39794000867204		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.1	6	43790159	VEGFA	TRNAI25			100189401			rs998584-A	rs998584	0	998584		0	0.49	2E-11	10.69897000433602		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	14q32.33	14	104810872	ZBTB42, AKT1	ZBTB42 - LINC00638	100128927	196872		        6.16	       10.33	rs4983559-G	rs4983559	0	4983559	Intergenic	1	0.4	1E-8	8		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q25.3	1	182199750	ZNF648	LOC100130996			100130996			rs1689800-G	rs1689800	0	1689800		0	0.35	5E-20	19.30102999566398		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	12	123975620	ZNF664	ZNF664;ZNF664-FAM101A;LOC102723902			144348;100533183;102723902			rs4765127-T	rs4765127	0	4765127	intron;intron;intron	0	0.35	8E-10	9.096910013008054		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	up to 4,420 African ancestry individuals	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-?	rs6511720	0	6511720	intron	0	0.13	3E-115	114.5228787452803		NR	NR	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2p21	2	43845437	ABCG5, ABCG58	ABCG8			64241			rs4299376-G	rs4299376	0	4299376	intron	0	0.31	4E-72	71.39794000867202		    .08	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	9q34.2	9	133279427	ABO	ABO - SURF6	28	6838		        4.21	       51.28	rs9411489-T	rs9411489	1	635634	Intergenic	1	0.21	2E-41	40.69897000433602		    .08	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3q22.1	3	132444356	ACAD11	DNAJC13			23317			rs17404153-T	rs17404153	0	17404153	intron	0	0.14	2E-9	8.698970004336019		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p31.3	1	62560271	ANGPTL3	DOCK7			85440			rs2131925-G	rs2131925	0	2131925	intron	0	0.34	3E-32	31.52287874528033		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q21.3	1	150986360	ANXA9, CERS2	ANXA9			8416			rs267733-G	rs267733	0	267733	missense	0	0.16	5E-9	8.301029995663981		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	11	116778201	APOA1	ZPR1			8882			rs964184-C	rs964184	0	964184	intron	0	0.84	2E-26	25.69897000433602		    .09	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2p24.1	2	21041028	APOB	APOB			338			rs1367117-A	rs1367117	0	1367117	missense	0	0.32	1E-182	182		    .12	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.32	19	44919689	APOE	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.19	2E-178	177.698970004336		    .23	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q24.2	17	66214462	APOH, PRXCA	APOH			350			rs1801689-C	rs1801689	0	1801689	missense	0	0.04	1E-11	11		    .10	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.12	12	111634620	BRAP	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-G	rs11065987	0	11065987	Intergenic	1	0.41	1E-11	11		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	13q13.1	13	32379251	BRCA2	BRCA2			675			rs4942486-T	rs4942486	0	4942486	intron	0	0.48	2E-11	10.69897000433602		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.32	2E-34	33.69897000433602		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.11	19	19296909	CILP2	SUGP1			57794			rs10401969-C	rs10401969	0	10401969	intron	0	0.09	3E-54	53.52287874528033		    .12	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p22.3	3	32491518	CMTM6	CMTM6			54918			rs7640978-T	rs7640978	0	7640978	intron	0	0.09	1E-8	8		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q23.2	5	123519722	CSNK1G3	CSNK1G3			1456			rs4530754-G	rs4530754	0	4530754	intron	0	0.46	4E-12	11.39794000867204		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q12.1	8	58476006	CYP7A1	UBXN2B - CYP7A1	137886	1581		       24.51	       14.17	rs2081687-T	rs2081687	0	2081687	Intergenic	1	0.36	1E-7	7		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17p13.1	17	7188331	DLG4	ASGR1 - DLG4	432	1742		        8.77	        1.56	rs314253-C	rs314253	0	314253	Intergenic	1	0.37	3E-10	9.522878745280336		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.3	7	21567734	DNAH11	DNAH11			8701			rs12670798-C	rs12670798	0	12670798	intron	0	0.25	5E-14	13.30102999566398		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2p15	2	62922422	EHBP1	EHBP1			23301			rs2710642-G	rs2710642	0	2710642	intron	0	0.35	6E-9	8.221848749616356		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	11	61802358	FADS1, FADS2, FADS3	FADS1			3992			rs174546-T	rs174546	0	174546	UTR-3	0	0.36	2E-39	38.69897000433601		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q35	2	215439661	FN1	FN1 - LINC00607	2335	646324		        3.49	      171.90	rs1250229-T	rs1250229	0	1250229	Intergenic	1	0.27	3E-8	7.522878745280337		    .02	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.1	6	115991730	FRK	FRK			2444			rs9488822-T	rs9488822	0	9488822	intron	0	0.36	2E-7	6.698970004336019		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	10q25.2	10	112174128	GPAM	GPAM			57678			rs2255141-A	rs2255141	0	2255141	intron	0	0.30	1E-13	13		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.07	8E-14	13.09691001300805		    .06	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.32	6	32444658	HLA	HLA-DRA			3122			rs3177928-A	rs3177928	0	3177928	UTR-3	0	0.17	3E-17	16.52287874528034		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q13.3	5	75360714	HMGCR	HMGCR			3156			rs12916-C	rs12916	0	12916	UTR-3	0	0.40	8E-78	77.09691001300804		    .07	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	12	120978847	HNF1A	HNF1A			6927			rs1169288-C	rs1169288	0	1169288	missense	0	0.34	6E-21	20.22184874961635		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q22.2	16	72074194	HPR	HPR;TXNL4B			3250;54957			rs2000999-A	rs2000999	0	2000999	intron;intron	0	0.20	4E-41	40.39794000867204		    .07	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q14.2	2	118078265	INSIG2	CCDC93 - INSIG2	54520	51141		       64.10	       10.21	rs10490626-A	rs10490626	0	10490626	Intergenic	1	0.08	2E-12	11.69897000433602		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.3	1	234722850	IRF2BP2	LINC01132			100506810			rs514230-A	rs514230	0	514230	nearGene-5	0	0.48	9E-12	11.04575749056067		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.12	4E-262	261.397940008672		    .22	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	1	25449242	LDLRAP1	TMEM57			55219			rs12027135-A	rs12027135	0	12027135	intron	0	0.46	2E-14	13.69897000433602		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q14.2	2	120551912	LOC84931	LINC01101 - GLI2	84931	2736		       85.56	      245.38	rs2030746-T	rs2030746	0	2030746	Intergenic	1	0.4	9E-9	8.045757490560675		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6q25.3	6	160157828	LPA	SLC22A1			6580			rs1564348-C	rs1564348	0	1564348	intron	0	0.18	3E-21	20.52287874528034		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4p16.3	4	3471412	LRPAP1	DOK7			285489			rs6831256-G	rs6831256	0	6831256	intron	0	0.42	2E-8	7.698970004336018		    .02	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	20	40462847	MAFB	HSPE1P1 - MAFB	140895	9935		      529.61	      223.00	rs2902940-G	rs2902940	0	2902940	Intergenic	1	0.30	2E-11	10.69897000433602		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.2	7	25952206	MIR148A	MIR148A - NFE2L3	406940	9603		        2.22	      200.02	rs4722551-C	rs4722551	0	4722551	Intergenic	1	0.2	4E-14	13.39794000867204		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q41	1	220800221	MOSC1	MARC1			64757			rs2642442-C	rs2642442	0	2642442	intron	0	0.33	5E-11	10.30102999566398		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	22q12.2	22	29982714	MTMR3	MTMR3			8897			rs5763662-T	rs5763662	0	5763662	intron	0	0.04	1E-8	8		    .08	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	6p22.3	6	16127176	MYLIP	MYLIP			29116			rs3757354-T	rs3757354	0	3757354	nearGene-5	0	0.24	2E-17	16.69897000433602		    .04	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	7p13	7	44539581	NPC1L1	NPC1L1			29881			rs2072183-C	rs2072183	0	2072183	cds-synon	0	0.29	7E-16	15.15490195998574		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	14q12	14	24414681	NYNRIN	NYNRIN			57523			rs8017377-A	rs8017377	0	8017377	missense	0	0.46	3E-15	14.52287874528034		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q21.32	17	47347749	OSBPL7	EFCAB13			124989			rs7206971-A	rs7206971	0	7206971	intron	0	0.49	3E-7	6.522878745280337		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p32.3	1	55038977	PCSK9	PCSK9			255738			rs2479409-G	rs2479409	0	2479409	nearGene-5	0	0.32	3E-50	49.52287874528033		    .06	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	1	26811902	PIGV, NR0B2	PIGV - ZDHHC18	55650	84243		       13.50	       14.81	rs12748152-T	rs12748152	0	12748152	Intergenic	1	0.09	3E-12	11.52287874528034		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.3	8	143969375	PLEC1	PLEC			5339			rs11136341-G	rs11136341	0	11136341	intron	0	0.4	7E-12	11.15490195998574		    .05	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	22q13.31[rs4253772]; 22q13.31[rs4253776]			PPARA	 - 						rs4253772-T	rs4253772, rs4253776					0.11	3E-8			    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	8	9325848	PPP1R3B	LOC157273			157273			rs9987289-A	rs9987289	0	9987289	intron	0	0.10	9E-24	23.04575749056067		    .07	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20p12.1	20	17865277	SNX5	BANF2 - SNX5	140836	27131		      129.41	       76.32	rs2328223-C	rs2328223	0	2328223	Intergenic	1	0.21	6E-9	8.221848749616356		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p13.3	1	109275684	SORT1	CELSR2			1952			rs629301-G	rs629301	0	629301	UTR-3	0	0.24	5E-241	240.301029995664		    .17	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q11.23	8	54509054	SOX17	TRMT112P7 - SEC11B	100287567	157708		       29.06	       13.44	rs10102164-A	rs10102164	0	10102164	Intergenic	1	0.21	4E-11	10.39794000867204		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20p12.1	20	12982070	SPTLC3	PA2G4P2 - SPTLC3	170533	55304		      600.55	       26.91	rs364585-A	rs364585	0	364585	Intergenic	1	0.38	4E-10	9.397940008672037		    .03	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.2	11	126374057	ST3GAL4	ST3GAL4			6484			rs11220462-A	rs11220462	0	11220462	intron	0	0.14	7E-21	20.15490195998574		    .06	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	5q33.3	5	156963286	TIMD4	TIMD4			91937			rs6882076-T	rs6882076	0	6882076	nearGene-5	0	0.36	3E-31	30.52287874528034		    .05	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	20	41043978	TOP1	TOP1			7150			rs6029526-A	rs6029526	0	6029526	intron	0	0.47	5E-18	17.30102999566398		    .04	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.47	2E-50	49.69897000433602		    .06	[NR] unit decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q37.1	2	233770738	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs11563251-T	rs11563251	0	11563251	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.12	5E-8	7.30102999566398		    .03	[NR] unit increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	9p24.2	9	2640759	VLDLR	VLDLR			7436			rs3780181-G	rs3780181	0	3780181	intron	0	0.08	2E-9	8.698970004336019		    .04	[NR] unit decrease	NR (Imputed)	N
05/13/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	8,743 East Asian ancestry individuals	11q23.3	11	116776891	APOA5, A4, C3, A1	BUD13 - ZPR1	84811	8882		        3.89	        1.67	rs2160669-?	rs2160669	0	2160669	Intergenic	1	0.73	3E-128	127.5228787452803		NR	NR	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	10p15.1	10	5212884	AKR1C4	AKR1C4			1109			rs1832007-G	rs1832007	0	1832007	intron	0	0.18	2E-12	11.69897000433602		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	1p31.3	1	62560271	ANGPTL3	DOCK7			85440			rs2131925-G	rs2131925	0	2131925	intron	0	0.34	3E-74	73.52287874528034		    .07	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	11	116778201	APOA1	ZPR1			8882			rs964184-C	rs964184	0	964184	intron	0	0.84	7E-224	223.1549019599858		    .23	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	15q15.1	15	42391589	CAPN3	CAPN3			825			rs2412710-A	rs2412710	0	2412710	intron	0	0.04	2E-11	10.69897000433602		    .10	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.32	2E-25	24.69897000433602		    .04	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.11	19	19296909	CILP2	SUGP1			57794			rs10401969-C	rs10401969	0	10401969	intron	0	0.09	1E-69	68.99999999999999		    .12	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16p11.2	16	30907166	CTF1	CTF2P			100289419			rs11649653-G	rs11649653	0	11649653		0	0.4	2E-7	6.698970004336019		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	10q23.33	10	93079885	CYP26A1	CYP26A1 - NIP7P1	1592	389997		        2.00	       25.86	rs2068888-A	rs2068888	0	2068888	Intergenic	1	0.45	2E-11	10.69897000433602		    .02	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	11	61802358	FADS1, FADS2, FADS3	FADS1			3992			rs174546-T	rs174546	0	174546	UTR-3	0	0.36	7E-38	37.15490195998574		    .05	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	15q15.3	15	43953733	FRMD5	FRMD5			84978			rs2929282-T	rs2929282	0	2929282	intron	0	0.07	2E-9	8.698970004336019		    .07	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16q12.2[rs1121980]; 16q12.2[rs9930333]			FTO	 - 						rs1121980-A	rs1121980, rs9930333					0.43	3E-8			    .02	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.13	1	230159944	GALNT2	GALNT2			2590			rs4846914-G	rs4846914	0	4846914	intron	0	0.41	7E-31	30.15490195998574		    .04	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.39	2E-239	238.698970004336		    .12	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	19	7224420	INSR	INSR;LOC100996405			3643;100996405			rs7248104-A	rs7248104	0	7248104	intron;UTR-3	0	0.42	5E-10	9.301029995663981		    .02	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	2q36.3	2	226235982	IRS1	NYAP2 - MIR5702	57624	100847053		      581.96	      422.73	rs2972146-G	rs2972146	0	2972146	Intergenic	1	0.37	3E-15	14.52287874528034		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	10q21.3	10	63267850	JMJD1C	JMJD1C			221037			rs10761731-T	rs10761731	0	10761731	intron	0	0.44	8E-12	11.09691001300806		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	4q22.1	4	87109109	KLHL8	AFF1			4299			rs442177-G	rs442177	0	442177	intron	0	0.42	1E-18	18		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-A	rs1532085	0	1532085	intron	0	0.40	2E-18	17.69897000433602		    .03	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-G	rs12678919	0	12678919	Intergenic	1	0.13	2E-199	198.698970004336		    .17	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	12q13.3	12	57398797	LRP1	R3HDM2			22864			rs11613352-T	rs11613352	0	11613352	intron	0	0.26	9E-14	13.04575749056067		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	4p16.3	4	3471412	LRPAP1	DOK7			285489			rs6831256-G	rs6831256	0	6831256	intron	0	0.42	2E-12	11.69897000433602		    .03	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	5q11.2	5	56565959	MAP3K1	LOC101928448			101928448			rs9686661-T	rs9686661	0	9686661	intron	0	0.2	3E-16	15.52287874528034		    .04	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7q31.2	7	116717990	MET	MET			4233			rs38855-G	rs38855	0	38855	intron	0	0.47	2E-8	7.698970004336018		    .02	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7p15.2	7	25952206	MIR148A	MIR148A - NFE2L3	406940	9603		        2.22	      200.02	rs4722551-C	rs4722551	0	4722551	Intergenic	1	0.2	9E-11	10.04575749056067		    .02	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7q11.23	7	73568544	MLXIPL	TBL2			26608			rs17145738-T	rs17145738	0	17145738	nearGene-3	0	0.13	9E-99	98.04575749056066		    .12	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	17q21.31	17	43800798	MPP3	MPP3			4356			rs8077889-C	rs8077889	0	8077889	nearGene-3	0	0.22	1E-8	8		    .03	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	3q22.3	3	136207780	MSL2L1	RPL31P23 - PCCB	391581	5096		        1.85	       42.55	rs645040-G	rs645040	0	645040	Intergenic	1	0.23	2E-12	11.69897000433602		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8p22	8	18415371	NAT2	NAT2 - PSD3	10	23362		       14.16	      111.93	rs1495741-G	rs1495741	0	1495741	Intergenic	1	0.26	3E-12	11.52287874528034		    .04	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16p13.11	16	15036083	PDXDC1	PDXDC1			23042			rs3198697-T	rs3198697	0	3198697	cds-synon	0	0.43	2E-8	7.698970004336018		    .02	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.11	19	33408159	PEPD	PEPD			5184			rs731839-G	rs731839	0	731839	intron	0	0.35	3E-9	8.522878745280337		    .02	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	1	26811902	PIGV, NR0B2	PIGV - ZDHHC18	55650	84243		       13.50	       14.81	rs12748152-T	rs12748152	0	12748152	Intergenic	1	0.09	1E-9	8.999999999999998		    .04	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8p23.1	8	10826419	PINX1	PINX1;MIR1322			54984;100302166			rs11776767-C	rs11776767	0	11776767	intron;nearGene-5	0	0.37	3E-11	10.52287874528034		    .02	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	22q13.1	22	38150026	PLA2G6	PLA2G6			8398			rs5756931-C	rs5756931	0	5756931	intron	0	0.40	3E-8	7.522878745280337		    .02	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	20	45925376	PLTP	PLTP - PCIF1	5360	63935		       13.01	        9.30	rs6065906-C	rs6065906	0	6065906	Intergenic	1	0.19	2E-34	33.69897000433602		    .05	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	6q22.33[rs1936800]; 6q22.33[rs719726]			RSPO3	 - 						rs1936800-C	rs1936800, rs719726					0.49	3E-8			    .02	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	5q33.3	5	156963286	TIMD4	TIMD4			91937			rs6882076-T	rs6882076	0	6882076	nearGene-5	0	0.36	2E-15	14.69897000433602		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.47	1E-107	107		    .08	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	7q11.22	7	72664689	TYW1B	TYW1B			441250			rs13238203-T	rs13238203	0	13238203	intron	0	0.04	3E-6	5.522878745280337		    .06	[NR] mg/dL decrease	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	6p21.1	6	43790159	VEGFA	TRNAI25			100189401			rs998584-A	rs998584	0	998584		0	0.49	3E-15	14.52287874528034		    .49	[NR] mg/dL increase	NR (Imputed)	N
05/12/2014	24097068	Willer CJ	10/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/24097068	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	12	123975620	ZNF664	ZNF664;ZNF664-FAM101A;LOC102723902			144348;100533183;102723902			rs4765127-T	rs4765127	0	4765127	intron;intron;intron	0	0.35	2E-8	7.698970004336018		    .03	[NR] mg/dL decrease	NR (Imputed)	N
05/01/2014	24094242	Li J	10/05/2013	BMC Genomics	http://www.ncbi.nlm.nih.gov/pubmed/24094242	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	9	133278431	SURF6, ABO	ABO - SURF6	28	6838		        3.22	       52.28	rs651007-A	rs651007	0	651007	Intergenic	1	0.226	1E-56	56		    .08	[0.069-0.089] U/L decrease	Affymetrix [658,288]	N
05/01/2014	24094242	Li J	10/05/2013	BMC Genomics	http://www.ncbi.nlm.nih.gov/pubmed/24094242	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	9	133257486	ABO	ABO			28			rs8176720-C	rs8176720	0	8176720	cds-synon	0	0.452	3E-21	20.52287874528034		    .04	[0.033-0.049] U/L increase	Affymetrix [658,288]	N
05/01/2014	24094242	Li J	10/05/2013	BMC Genomics	http://www.ncbi.nlm.nih.gov/pubmed/24094242	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	9	133290774	SURF6, ABO	ABO - SURF6	28	6838		       15.56	       39.93	rs7025162-A	rs7025162	0	7025162	Intergenic	1	0.384	3E-27	26.52287874528033		    .05	[0.039-0.055] U/L decrease	Affymetrix [658,288]	N
05/01/2014	24094242	Li J	10/05/2013	BMC Genomics	http://www.ncbi.nlm.nih.gov/pubmed/24094242	Genome-wide association study on serum alkaline phosphatase levels in a Chinese population.	Serum alkaline phosphatase levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	9q34.2	9	133263862	ABO	ABO			28			rs657152-T	rs657152	0	657152	intron	0	0.46	4E-8	7.397940008672037		    .06	[NR] U/L decrease	Affymetrix [658,288]	N
04/16/2014	24098343	Polfus LM	10/03/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24098343	Genome-wide association study of gene by smoking interactions in coronary artery calcification.	Coronary artery calcification (smoking interaction)	915 European ancestry individuals	1,025 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [2,171,047] Imputed	N
04/09/2014	24159609	Choi H	10/01/2013	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/24159609	Genome-wide genotype-based risk model for survival in acute myeloid leukaemia patients with normal karyotype.	Acute myeloid leukemia	118 Korean ancestry individuals	129 Korean ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [632,957]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	7p14.3	7	29178543	CHN2, CPVL	CPVL			54504			rs245914-?	rs245914	0	245914	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	6p12.1	6	56085576	COL21A1	COL21A1			81578			rs12196860-?	rs12196860	0	12196860	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	2q12.1	2	102959630	Intergenic	TMEM182 - AHCYP3	130827	402093		      115.79	     1435.37	rs12105421-?	rs12105421	0	12105421	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	14q22.1	14	50980053	PYGL, TRIM9	TRIM9			114088			rs1959536-?	rs1959536	0	1959536	intron	0	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	20p11.23	20	19232246	SLC24A3	SLC24A3			57419			rs6081541-?	rs6081541	0	6081541	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	3p24.3	3	23152437	UBE2E2, RPL24P7	RPL24P7 - UBE2E2-AS1	100270963	100505877		       17.57	       42.63	rs4619807-?	rs4619807	0	4619807	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	8q24.21	8	127907951	PVT1	PVT1			5820			rs16902460-?	rs16902460	0	16902460	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	13q33.1	13	101407725	ITGBL1, NALCN	NALCN			259232			rs1572591-?	rs1572591	0	1572591	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	15q14	15	38441646	FAM98B, RASGRP1	SPRED1 - FAM98B	161742	283742		       84.40	       12.48	rs8029989-?	rs8029989	0	8029989	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [545,513]	N
04/09/2014	24132900	Kanazawa T	10/01/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24132900	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NR	6p21.33	6	31623121	MICB, TNF	PRRC2A;SNORA38			7916;677820			rs2736172-?	rs2736172	0	2736172	intron;ncRNA	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [545,513]	N
04/05/2014	24084763	Wang J	10/01/2013	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24084763	Germline variants and advanced colorectal adenomas: adenoma prevention with celecoxib trial genome-wide association study.	Colorectal adenoma (advanced)	139 European ancestry cases, 1,267 European ancestry controls	4,175 European ancestry cases, 5,036 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
03/26/2014	24124408	Hong KW	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124408	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NR	2p12	2	81628601	CTNNA2	LRRTM1 - MTND4P25	347730	100873246		     1324.01	     1186.37	rs6736587-C	rs6736587	0	6736587	Intergenic	1	0.16	5E-8	7.30102999566398	(Delta SBP)	   1.38	[NR] mmHg decrease	Affymetrix [333,651]	N
03/26/2014	24124408	Hong KW	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124408	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NR	10q24.1	10	96658173	PIK3AP1	PIK3AP1			118788			rs7098785-T	rs7098785	0	7098785	intron	0	0.361	5E-6	5.301029995663981	(Delta SBP)	    .90	[NR] mmHg decrease	Affymetrix [333,651]	N
03/26/2014	24124408	Hong KW	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124408	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NR	5q11.2	5	57514311	ACTBL2	ACTBL2 - PGAM1P1	345651	100130514		       31.50	      646.89	rs6892553-G	rs6892553	0	6892553	Intergenic	1	0.137	2E-6	5.698970004336018	(Delta DBP)	   1.08	[NR] mmHg increase	Affymetrix [333,651]	N
03/26/2014	24124408	Hong KW	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124408	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NR	8p11.23	8	38146907	STAR	STAR			6770			rs16887217-C	rs16887217	0	16887217	intron	0	0.105	4E-6	5.397940008672037	(Delta DBP)	   1.16	[NR] mmHg increase	Affymetrix [333,651]	N
03/26/2014	24124408	Hong KW	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124408	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NR	6p25.2	6	2500586	MYLK4	HMGN2P28 - C6orf195	100128372	154386		      158.09	      122.15	rs4959677-C	rs4959677	0	4959677	Intergenic	1	0.216	9E-6	5.045757490560675	(Delta DBP)	    .83	[NR] mmHg increase	Affymetrix [333,651]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	3p14.1	3	64550972	ADAMTS9	ADAMTS9			56999			rs80311637-A	rs80311637	0	80311637	missense	0	0.029	7E-6	5.154901959985742		    .14	[0.078-0.196] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	16q12.1	16	50403617	BRD7	BRD7 - NKD1	29117	85407		       34.68	      144.71	rs9941219-A	rs9941219	0	9941219	Intergenic	1	0.024	4E-6	5.397940008672037		    .15	[0.089-0.219] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	18q22.1	18	68877518	CCDC102B	CCDC102B			79839			rs1539893-G	rs1539893	0	1539893	intron	0	0.188	3E-6	5.522878745280337		    .06	[0.035-0.085] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	20p11.21	20	23161018	CD93	RNA5SP478 - NXT1	100873720	29107		         .05	      189.72	rs844917-A	rs844917	0	844917	Intergenic	1	0.041	6E-6	5.221848749616356		    .11	[0.064-0.158] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	10p14	10	11182702	CELF2	CELF2			10659			rs596406-G	rs596406	0	596406	intron	0	0.044	9E-6	5.045757490560675		    .11	[0.063-0.157] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	2q24.1	2	154377806	GALNT13	GALNT13			114805			rs12621256-G	rs12621256	0	12621256	intron	0	0.066	4E-6	5.397940008672037		    .09	[0.053-0.131] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	2q23.3	2	149707970	MMADHC	LOC101929231			101929231			rs17801127-A	rs17801127	0	17801127	intron	0	0.03	2E-7	6.698970004336019		    .15	[0.097-0.211] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	1q23.3	1	163172765	RGS5	RGS5;LOC101928404			8490;101928404			rs12035879-A	rs12035879	0	12035879	intron;intron	0	0.419	4E-6	5.397940008672037		    .05	[0.028-0.068] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	20p13	20	1948896	SIRPA	LOC727993			727993			rs6035126-A	rs6035126	0	6035126	intron	0	0.019	5E-6	5.301029995663981		    .18	[0.1-0.25] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	17q25.1	17	73065795	SLC39A11	SLC39A11			201266			rs903107-G	rs903107	0	903107	intron	0	0.052	6E-6	5.221848749616356		    .10	[0.059-0.149] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NR	1p31.1	1	76433779	ST6GALNAC3	ST6GALNAC3			256435			rs4949718-A	rs4949718	0	4949718	intron	0	0.402	2E-7	6.698970004336019		    .05	[0.033-0.073] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	3p14.1	3	64550972	ADAMTS9	ADAMTS9			56999			rs80311637-A	rs80311637	0	80311637	missense	0	0.029	2E-6	5.698970004336018		    .08	[0.047-0.109] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	10p14	10	11182702	CELF2	CELF2			10659			rs596406-G	rs596406	0	596406	intron	0	0.044	4E-7	6.397940008672037		    .07	[0.042-0.092] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	14q12	14	26019261	CYB5AP5	OR7K1P - CYB5AP5	81114	100289051		      660.49	      188.70	rs862946-A	rs862946	0	862946	Intergenic	1	0.112	2E-7	6.698970004336019		    .04	[0.027-0.059] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	21q21.3	21	27285630	EIF4A1P1	GPX1P2 - EIF4A1P1	2884	54052		      141.63	       81.38	rs457603-G	rs457603	0	457603	Intergenic	1	0.033	5E-6	5.301029995663981		    .07	[0.041-0.099] unit decrease	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	10q24.2	10	99397681	GOT1	GOT1			2805			rs76850691-C	rs76850691	0	76850691	missense	0	0.019	9E-7	6.045757490560675		    .10	[0.06-0.138] unit decrease	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	3p12.3	3	79554914	ROBO1	ROBO1			6091			rs7617400-A	rs7617400	0	7617400	intron	0	0.161	6E-6	5.221848749616356		    .03	[0.02-0.048] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	1p31.1	1	76433779	ST6GALNAC3	ST6GALNAC3			256435			rs4949718-A	rs4949718	0	4949718	intron	0	0.402	1E-6	5.999999999999999		    .03	[0.016-0.036] unit increase	Illumina [747,076]	N
03/27/2014	24124411	Park TJ	09/30/2013	Genomics Inform	http://www.ncbi.nlm.nih.gov/pubmed/24124411	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NR	2q22.1	2	137115777	THSD7B	THSD7B			80731			rs892877-A	rs892877	0	892877	intron	0	0.18	4E-6	5.397940008672037		    .03	[0.018-0.046] unit decrease	Illumina [747,076]	N
04/01/2014	24065183	Armour JA	09/25/2013	Heredity (Edinb)	http://www.ncbi.nlm.nih.gov/pubmed/24065183	Genome-wide association study of handedness excludes simple genetic models.	Handedness	263 left-handed European ancestry individuals, 2,092 right-handed European ancestry individuals	NA	3p22.2	3	39013826	Intergenic	SCN11A - WDR48	11280	57599		       60.18	       38.16	rs883565-?	rs883565	0	883565	Intergenic	1	NR	3E-7	6.522878745280337		NR	NR	Illumina [2,535,688] (imputed)	N
04/01/2014	24065183	Armour JA	09/25/2013	Heredity (Edinb)	http://www.ncbi.nlm.nih.gov/pubmed/24065183	Genome-wide association study of handedness excludes simple genetic models.	Handedness	173 left-handed European ancestry individuals, 1,412 right-handed European ancestry individuals	NA	9p24.1	9	4774015	Intergenic	ECM1P1 - RPS5P6	100420354	392282		        4.12	        7.40	rs296859-?	rs296859 	0	296859	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Illumina [2,499,296] (imputed)	N
03/26/2014	24065354	Al-Qahtani A	09/24/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24065354	Genome-wide association study of chronic hepatitis B virus infection reveals a novel candidate risk allele on 11q22.3.	Liver disease in chronic hepatitis B virus infection	up to 305 Arab ancestry cases, 343 Arab ancestry controls	48 Arab ancestry cases, 177 Arab ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [530,480]	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	22q12.2	22	30285268	GATSL3	GATSL3			652968			rs1043099-?	rs1043099	0	1043099	UTR-3	0	0.79	7E-9	8.154901959985743		   1.19	[1.12-1.27] 	Affymetrix [1,831,729] (imputed)	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	1p36.32	1	2622185	TNFRSF14	MMEL1			79258			rs3890745-?	rs3890745	0	3890745	intron	0	NR	1E-6	5.999999999999999		   1.18	[1.1-1.27] 	Affymetrix [1,831,729] (imputed)	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-?	rs2476601	0	2476601	missense;intron	0	NR	5E-33	32.30102999566397		   1.77	[1.61-1.95] 	Affymetrix [1,831,729] (imputed)	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	4p15.2	4	26106575	RBPJ	SMIM20 - RBPJ	389203	3516		      176.70	       56.92	rs874040-?	rs874040	0	874040	Intergenic	1	NR	4E-7	6.397940008672037		   1.19	[1.11-1.28] 	Affymetrix [1,831,729] (imputed)	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6p21.32	6	32315077	HLA-DRB1	C6orf10			10665			rs6910071-?	rs6910071	0	6910071	intron	0	NR	2E-124	123.698970004336		   2.30	[2.14-2.46] 	Affymetrix [1,831,729] (imputed)	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	6q23.3	6	137685367	TNFAIP3	BTF3L4P3 - TNFAIP3	391040	7128		      140.92	      181.82	rs6920220-?	rs6920220	0	6920220	Intergenic	1	NR	3E-8	7.522878745280337		   1.23	[1.14-1.32] 	Affymetrix [1,831,729] (imputed)	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	10p15.1	10	6057082	IL2RA	IL2RA			3559			rs2104286-?	rs2104286	0	2104286	intron	0	NR	1E-6	5.999999999999999		   1.19	[1.11-1.28] 	Affymetrix [1,831,729] (imputed)	N
04/04/2014	24449572	Orozco G	09/24/2013	Arthritis Rheumatol	http://www.ncbi.nlm.nih.gov/pubmed/24449572	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	12q13.3	12	57574932	KIF5A	KIF5A			3798			rs1678542-?	rs1678542	0	1678542	intron	0	NR	1E-7	7		   1.20	[1.12-1.28] 	Affymetrix [1,831,729] (imputed)	N
04/09/2014	24086445	Wang Q	09/24/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24086445	Genome-wide association analysis with gray matter volume as a quantitative phenotype in first-episode treatment-naïve patients with schizophrenia.	Gray matter volume (schizophrenia interaction)	74 Han Chinese ancestry cases, 51 Han Chinese ancestry controls	NR	6q21	6	114226817	HS3ST5	HS3ST5			222537			rs9488343-?	rs9488343	0	9488343	intron	0	NR	7E-7	6.154901959985743		    .04	[NR] unit increase	[1,983,054] (Imputed)	N
04/09/2014	24086445	Wang Q	09/24/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24086445	Genome-wide association analysis with gray matter volume as a quantitative phenotype in first-episode treatment-naïve patients with schizophrenia.	Gray matter volume (schizophrenia interaction)	74 Han Chinese ancestry cases, 51 Han Chinese ancestry controls	NR	7q34	7	139806781	TBXAS1	TBXAS1			6916			rs10277664-?	rs10277664	0	10277664	intron	0	NR	1E-7	7		    .04	[NR] unit decrease	[1,983,054] (Imputed)	N
04/09/2014	24086445	Wang Q	09/24/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24086445	Genome-wide association analysis with gray matter volume as a quantitative phenotype in first-episode treatment-naïve patients with schizophrenia.	Gray matter volume (schizophrenia interaction)	74 Han Chinese ancestry cases, 51 Han Chinese ancestry controls	NR	12p12.3	12	18355318	PIK3C2G	PIK3C2G			5288			rs11044045-?	rs11044045	0	11044045	intron	0	NR	3E-6	5.522878745280337		    .04	[NR] unit decrease	[1,983,054] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	3q21.1	3	122284910	CASR	CASR			846			rs1801725-T	rs1801725	0	1801725	missense	0	0.15	9E-86	85.04575749056067		    .07	[0.063-0.079] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	2q37.1	2	233356202	DGKD	DGKD			8527			rs1550532-C	rs1550532	0	1550532	intron	0	0.31	8E-11	10.09691001300805		    .02	[0.012-0.024] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	0.42	1E-10	10		    .02	[0.016-0.018] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	10p14	10	9286688	GATA3	LINC00709;LOC101928272			100507163;101928272			rs10491003-T	rs10491003	0	10491003	ncRNA;intron	0	0.09	5E-9	8.301029995663981		    .03	[0.017-0.037] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	11p15.4	11	3007859	CARS	CARS			833			rs7481584-A	rs7481584	0	7481584	intron	0	0.3	1E-10	10		    .02	[0.012-0.024] unit decrease	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	13q14.11	13	41984940	DGKH, KIAA0564	VWA8-AS1 - RPS28P8	100507240	100271381		        3.38	       18.49	rs7336933-A	rs7336933	0	7336933	Intergenic	1	0.15	9E-10	9.045757490560675		    .02	[0.014-0.03] unit decrease	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	20q13.2	20	54157888	CYP24A1	CYP24A1			1591			rs1570669-A	rs1570669	0	1570669	intron	0	0.66	9E-12	11.04575749056067		    .02	[0.012-0.024] unit decrease	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	5q35.3	5	177370342	RGS14, SLC34A1	RGS14			10636			rs4074995-A	rs4074995	0	4074995	intron	0	0.28	5E-6	5.301029995663981		    .01	[0.0071-0.0189] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	6q13	6	73749014	CD109	CD109			135228			rs9447004-A	rs9447004	0	9447004	intron	0	0.48	3E-6	5.522878745280337		    .01	[0.0061-0.0179] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	6q25.3	6	156807123	ARID1B	ARID1B			57492			rs11967485-A	rs11967485	0	11967485	intron	0	0.1	9E-7	6.045757490560675		    .03	[0.016-0.036] unit decrease	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	7q11.21	7	65806210	VKORC1L1	LOC101929414			101929414			rs17711722-T	rs17711722	0	17711722	intron	0	0.47	8E-9	8.096910013008056		    .02	[0.0091-0.0209] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	17p13.3	17	1730810	WDR81, SERPINF2	WDR81			124997			rs12150338-T	rs12150338	0	12150338	cds-synon	0	0.09	2E-6	5.698970004336018		    .03	[0.018-0.042] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
03/27/2014	24068962	O'Seaghdha CM	09/19/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068962	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	20p11.21	20	25259553	PYGB	PYGB			5834			rs2281558-T	rs2281558	0	2281558	intron	0	0.25	5E-6	5.301029995663981		    .02	[0.0091-0.0209] unit increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety and major depressive disorder	1,080 European ancestry cases, 1,588 European ancestry controls	NA	6p24.1	6	11811081	C6orf105	ADTRP - HIVEP1	84830	3096		       31.45	      201.41	rs3950186-T	rs3950186	0	3950186	Intergenic	1	0.338	8E-6	5.096910013008055		   1.32	[NR] 	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety and major depressive disorder	1,080 European ancestry cases, 1,588 European ancestry controls	NA	9p23	9	10192290	PTPRD	PTPRD			5789			rs294856-?	rs294856	0	294856	intron	0	0.58	2E-6	5.698970004336018		   1.34	[NR] 	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety and major depressive disorder	1,080 European ancestry cases, 1,588 European ancestry controls	NA	17q25.3	17	78637883	CYTH1	DNAH17-AS1 - CYTH1	100996295	9267		      134.83	       36.17	rs4796827-A	rs4796827	0	4796827	Intergenic	1	0.409	2E-6	5.698970004336018		   1.33	[NR] 	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	1p33	1	47553550	RPL21P24	ATP6V0E1P4 - TRABD2B	100874504	388630		        2.80	      206.98	rs17420782-G	rs17420782	0	17420782	Intergenic	1	0.16	9E-6	5.045757490560675	(Quantitative)	    .55	[NR] unit increase	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	11q14.3	11	89733564	LOC100130203	TRIM77 - UBTFL2	390231	120126		       15.69	       19.45	rs17221829-A	rs17221829	0	17221829	Intergenic	1	0.38	5E-6	5.301029995663981	(Quantitative)	    .44	[NR] unit decrease	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	Xp21.1	23	32195845	DMD	DMD			1756			rs921896-C	rs921896	0	921896	intron	0	0.47	4E-6	5.397940008672037	(Quantitative)	    .47	[NR] unit increase	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	3q22.3	3	137049168	IL20RB	IL20RB - RNA5SP142	53833	100873409		       38.08	      468.97	rs17374749-?	rs17374749	0	17374749	Intergenic	1	0.78	7E-6	5.154901959985742	(Dichotomous)	   1.54	[NR] 	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	6q26	6	161254459	AGPAT4	AGPAT4			56895			rs3798943-?	rs3798943	0	3798943	intron	0	0.53	8E-6	5.096910013008055	(Dichotomous)	   1.45	[NR] 	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	7p14.3	7	28772876	CREB5	CREB5			9586			rs10238623-A	rs10238623	0	10238623	intron	0	0.28	5E-6	5.301029995663981	(Dichotomous)	   1.55	[NR] 	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	9q22.32	9	96065532	LOC158435	LOC158435			158435			rs7867155-?	rs7867155	0	7867155	nearGene-5	0	0.88	9E-7	6.045757490560675	(Dichotomous)	   1.84	[NR] 	Illumina [471,581]	N
08/08/2014	24047446	Schosser A	09/19/2013	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/24047446	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA   	21q22.2	21	40514656	DSCAM	DSCAM			1826			rs9980603-?	rs9980603	0	9980603	intron	0	0.58	3E-7	6.522878745280337	(Dichotomous)	   1.53	[NR] 	Illumina [471,581]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicule stimulating hormone	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	15	51232095	CYP19A1	CYP19A1			1588			rs2414095-A	rs2414095	0	2414095	intron	0	0.31	2E-16	15.69897000433602	(FSH)	    .11	[0.090-0.130] unit increase	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicule stimulating hormone	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	9q33.3	9	124565484	NR	NR6A1			2649			rs10114038-G	rs10114038	0	10114038	intron	0	0.18	2E-6	5.698970004336018	(FSH)	NR	NR	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicule stimulating hormone	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	14q32.13	14	95425937	NR	SYNE3			161176			rs12895389-A	rs12895389	0	12895389	intron	0	0.13	2E-7	6.698970004336019	(FSH)	NR	NR	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicule stimulating hormone	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	15	51360922	NR	GLDN			342035			rs12148477-G	rs12148477	0	12148477	intron	0	0.21	7E-7	6.154901959985743	(FSH)	NR	NR	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicule stimulating hormone	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	16q24.2	16	88462372	NR	ZFPM1			161882			rs904790-G	rs904790	0	904790	intron	0	0.47	8E-6	5.096910013008055	(FSH)	NR	NR	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicule stimulating hormone	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	19q13.33	19	48993898	NR	GYS1;RUVBL2			2997;10856			rs3764618-G	rs3764618	0	3764618	nearGene-5;UTR-5	0	0.08	4E-8	7.397940008672037	(FSH)	NR	NR	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	17	7583790	SHBG	MPDU1;LOC102724164			9526;102724164			rs2075230-G	rs2075230	0	2075230	ncRNA;UTR-5	0	0.29	1E-8	8	(Testosterone)	    .28	[0.18-0.38] unit decrease	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	17	7583790	SHBG	MPDU1;LOC102724164			9526;102724164			rs2075230-G	rs2075230	0	2075230	ncRNA;UTR-5	0	0.29	5E-19	18.30102999566398	(SHBG)	    .09	[0.070-0.110] unit decrease	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	15	51232095	CYP19A1	CYP19A1			1588			rs2414095-A	rs2414095	0	2414095	intron	0	0.31	7E-31	30.15490195998574	(Oestradiol)	    .08	[0.060-0.100] unit decrease	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	15	51325511	CYP19A1	CYP19A1			1588			rs2445762-C	rs2445762	0	2445762	intron	0	0.28	8E-28	27.09691001300805	(Oestradiol)	    .11	[0.090-0.130] unit increase	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	2q11.2	2	101996551	NR	IL1R2			7850			rs4321386-G	rs4321386	0	4321386	intron	0	0.34	9E-8	7.045757490560674	(Testosterone)	NR	NR	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	2q37.1	2	231294499	NR	ARMC9			80210			rs745962-T	rs745962	0	745962	intron	0	0.18	7E-6	5.154901959985742	(Oestradiol)	NR	NR	Illumina [709,211]	N
04/04/2014	24049095	Chen Z	09/18/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/24049095	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	14q31.3	14	88971072	NR	TTC8 - TRNAA17	123016	100189117		       93.08	        8.03	rs12589060-G	rs12589060	0	12589060	Intergenic	1	0.48	9E-6	5.045757490560675	(Oestradiol)	NR	NR	Illumina [709,211]	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	21q22.3	21	41923401	C2CD2	C2CD2			25966			rs451390-G	rs451390	0	451390	intron	0	0.85	2E-7	6.698970004336019		   4.55	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	4q21.1	4	77684215	CNOT6L	CXCL13 - CNOT6L	10563	246175		       72.38	       29.17	rs958617-G	rs958617	0	958617	Intergenic	1	0.7	3E-7	6.522878745280337		   6.67	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	10q23.33	10	95032445	CYP2C8	CYP2C59P - CYP2C8	100874505	1558		       24.88	        4.33	rs1934954-T	rs1934954	0	1934954	Intergenic	1	0.98	3E-6	5.522878745280337		   7.14	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11q22.3	11	103076736	DCUN1D5	DCUN1D5			84259			rs7947821-T	rs7947821	0	7947821	intron	0	0.75	2E-6	5.698970004336018		   7.14	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	21q22.2	21	40845029	DSCAM	DSCAM			1826			rs2837857-T	rs2837857	0	2837857	intron	0	0.7	2E-6	5.698970004336018		   3.33	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11q22.3	11	103256336	DYNC2H1	DYNC2H1			79659			rs12294076-T	rs12294076	0	12294076	intron	0	0.83	1E-7	7		   6.25	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	12q21.2	12	77344225	E2F7	NAV3			89795			rs6538140-G	rs6538140	0	6538140	intron	0	0.74	4E-6	5.397940008672037		   4.35	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	22q12.3	22	37148446	IL2RB	IL2RB			3560			rs3218255-G	rs3218255	0	3218255	intron	0	0.69	2E-7	6.698970004336019		   4.00	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	3p24.1	3	26501929	Intergenic	VENTXP4 - LRRC3B	152101	116135		      154.20	      120.88	rs2202157-T	rs2202157	0	2202157	Intergenic	1	0.84	8E-7	6.096910013008056		   4.00	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	Xp11.23	23	48047088	Intergenic	SPACA5 - ZNF630	389852	57232		       37.26	       11.09	rs142513793-C	rs142513793	0	142513793	Intergenic	1	0.97	2E-7	6.698970004336019		   5.00	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	Xp21.1	23	33765946	Intergenic	TBCAP1 - FAM47A	494540	158724		      724.05	      363.81	rs5928363-C	rs5928363	0	5928363	Intergenic	1	0.98	4E-6	5.397940008672037		   8.33	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	6p25.2	6	2355441	LOC100508120	GMDS-AS1			100508120			rs2505675-T	rs2505675	0	2505675	intron	0	0.85	4E-6	5.397940008672037		   4.55	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	16p13.3	16	3459056	NAA60	NAA60			79903			rs40363-G	rs40363	0	40363	intron	0	0.72	3E-6	5.522878745280337		  11.11	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	1q43	1	242711583	PLD5	RPL10AP5 - RSL24D1P4	645998	391183		      345.74	       60.99	rs6676375-T	rs6676375	0	6676375	Intergenic	1	0.87	8E-7	6.096910013008056		   3.03	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	1q42.13	1	228515588	RNF187	BTNL10 - RNA5SP19	100129094	100873274		        3.30	       40.21	rs1925714-G	rs1925714	0	1925714	Intergenic	1	0.86	2E-7	6.698970004336019		   2.86	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	14q24.2	14	70035333	SMOC1	RPL7AP6 - SLC8A3	326310	6547		      149.17	        8.88	rs17175227-G	rs17175227	0	17175227	Intergenic	1	0.98	9E-9	8.045757490560675		   7.14	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	2p25.2	2	5113465	SOX11	LINC01249 - LINC01248	727982	102723818		      457.24	      520.68	rs1075309-T	rs1075309	0	1075309	Intergenic	1	0.91	7E-7	6.154901959985743		   2.86	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	13q14.11	13	41931538	VWA8	VWA8			23078			rs1900442-T	rs1900442	0	1900442	intron	0	0.85	5E-6	5.301029995663981		   2.70	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11p13	11	32342641	WT1	RCN1 - WT1	5954	7490		      236.92	       45.13	rs2057178-A	rs2057178	0	2057178	Intergenic	1	0.92	3E-6	5.522878745280337		   1.61	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	8q23.1	8	105601093	ZFPM2	ZFPM2			23414			rs17217757-G	rs17217757	0	17217757	intron	0	0.82	3E-6	5.522878745280337		   2.33	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	9p21.3	9	22488679	DMRTA1	DMRTA1 - LINC01239	63951	441389		       36.21	      157.52	rs586716-G	rs586716	0	586716	Intergenic	1	0.846	8E-6	5.096910013008055		   4.76	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11q22.3	11	103109865	Intergenic	DYNC2H1			79659			rs12283022-G	rs12283022	0	12283022	intron	0	0.75	2E-6	5.698970004336018		   7.14	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11p15.2	11	13974608	SPON1	SPON1			10418			rs1819084-C	rs1819084	0	1819084	intron	0	0.71	9E-6	5.045757490560675		   6.25	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	14q32.31	14	101212918	SNORD114-31	MEG9 - DIO3OS	100507257	64150		      139.98	      339.31	rs6575836-G	rs6575836	0	6575836	Intergenic	1	0.79	8E-6	5.096910013008055		   4.00	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	Xq27.3	23	143759024	Intergenic	SPANXN2 - UBE2NL	494119	389898		       37.60	      125.05	rs139956886-C	rs139956886	0	139956886	Intergenic	1	0.98	6E-6	5.221848749616356		   8.33	[NR] 	Affymetrix [up to 4,467,279] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls, (see Thye 2010) 	NA	11p13	11	32342641	WT1	RCN1 - WT1	5954	7490		      236.92	       45.13	rs2057178-?	rs2057178	0	2057178	Intergenic	1	NR	1E-12	12	(binary model)	NR	NR	Affymetrix [1,009,364] (imputed)	N
04/10/2014	24057671	Chimusa ER	09/18/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/24057671	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls, (see Thye 2010) 	NA	18q11.2	18	22610832	NR	RPS4XP18 - UBE2CP2	646583	646595		       23.55	      289.65	rs4331426-?	rs4331426	0	4331426	Intergenic	1	NR	2E-8	7.698970004336018	(binary model)	NR	NR	Affymetrix [1,009,364] (imputed)	N
03/26/2014	24047826	Kleber ME	09/18/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24047826	Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: the AtheroRemo Consortium.	Homoarginine levels	5,143 European ancestry individuals	1,474 European ancestry individuals	15q21.1	15	45360505	GATM	SLC28A2 - GATM	9153	2628		       84.57	         .62	rs1153858-C	rs1153858	0	1153858	Intergenic	1	0.72	1E-45	44.99999999999999		    .27	[NR] unit decrease	Affymetrix & Illumina [2,543,887] (Imputed)	N
04/01/2014	24047820	St Pourcain B	09/18/2013	Mol Autism	http://www.ncbi.nlm.nih.gov/pubmed/24047820	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	6p22.1	6	29212944	OR2J2, TRIM27, ZNF311, OR2W1, OR2B3, OR2J3, LOC651503, OR214J1, OR5V1, OR12D3	TRNAI25			100189401			rs9257616-G	rs9257616	0	9257616		0	0.56	3E-7	6.522878745280337		    .09	[0.058-0.128] unit increase	Illumina [~2.5 million] (Imputed)	N
04/01/2014	24047820	St Pourcain B	09/18/2013	Mol Autism	http://www.ncbi.nlm.nih.gov/pubmed/24047820	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	10q25.1	10	107866308	Intergenic	RNA5SP326 - MAPKAPK5P1	100873592	100533849		      404.64	      981.90	rs1834180-A	rs1834180	0	1834180	Intergenic	1	0.68	5E-7	6.30102999566398		    .10	[0.060-0.134] unit increase	Illumina [~2.5 million] (Imputed)	N
04/01/2014	24047820	St Pourcain B	09/18/2013	Mol Autism	http://www.ncbi.nlm.nih.gov/pubmed/24047820	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	14q21.3	14	48968728	Intergenic	RPL18P1 - ATP5G2P2	326291	319119		      478.26	      405.18	rs2352908-G	rs2352908	0	2352908	Intergenic	1	0.84	1E-6	5.999999999999999		    .12	[0.071-0.169] unit increase	Illumina [~2.5 million] (Imputed)	N
04/01/2014	24047820	St Pourcain B	09/18/2013	Mol Autism	http://www.ncbi.nlm.nih.gov/pubmed/24047820	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	15q22.2	15	59136459	MYO1E, RNF111	MYO1E			4643			rs4218-G	rs4218	0	4218	UTR-3	0	0.29	1E-7	7		    .10	[0.063-0.137] unit increase	Illumina [~2.5 million] (Imputed)	N
03/26/2014	24046328	Bradley DT	09/17/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/24046328	A variant in LDLR is associated with abdominal aortic aneurysm.	Abdominal aortic aneurysm	1,755 European ancestry cases, 5,314 European ancestry controls	1,658 European ancestry cases, 28,962 European ancestry controls, 1,725 cases, 3,791 controls	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-?	rs6511720	0	6511720	intron	0	0.901	2E-10	9.698970004336017		   1.32	[1.20-1.43] 	Illumina [503,892]	N
03/23/2014	24045676	Pyun JA	09/16/2013	Menopause	http://www.ncbi.nlm.nih.gov/pubmed/24045676	Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.	Menarche (age at onset)	3,437 Korean ancestry females	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [343,637]	N
03/23/2014	24045676	Pyun JA	09/16/2013	Menopause	http://www.ncbi.nlm.nih.gov/pubmed/24045676	Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.	Menopause (age at onset)	1,827 Korean ancestry females	NA	10q26.13	10	123228637	RPS26P39, BUB3	RPS26P39 - GPR26	100128168	2849		       55.99	      437.72	rs11597068-G	rs11597068	0	11597068	Intergenic	1	0.939	1E-7	7		   1.37	[0.86-1.88] unit increase	Affymetrix [343,107]	N
03/23/2014	24045676	Pyun JA	09/16/2013	Menopause	http://www.ncbi.nlm.nih.gov/pubmed/24045676	Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.	Menopause (age at onset)	1,827 Korean ancestry females	NA	15q14	15	35566382	ATPBD4, AS1	DPH6-AS1			100507466			rs6495785-A	rs6495785	0	6495785	intron	0	0.787	5E-6	5.301029995663981		    .69	[0.40-0.98] unit decrease	Affymetrix [343,107]	N
03/27/2014	24043878	Wong EH	09/16/2013	Schizophr Bull	http://www.ncbi.nlm.nih.gov/pubmed/24043878	Common variants on Xq28 conferring risk of schizophrenia in Han Chinese.	Schizophrenia	481 Han Chinese ancestry cases, 2,025 Han Chinese ancestry controls	1,088 Han Chinese ancestry cases, 1,063 Han Chinese ancestry controls	Xq28	23	153942092	RENBP, ARHGAP4, MECP2	RENBP			5973			rs2269372-A	rs2269372	0	2269372	intron	0	NR	4E-8	7.397940008672037		   1.31	[NR] 	Illumina [2,383,054] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	2q12.2	2	105998818	NCK2, C2orf40	NCK2 - C2orf40	8440	84417		      104.54	       65.48	rs1669539-T	rs1669539	0	1669539	Intergenic	1	0.74	1E-6	5.999999999999999		   1.52	[0.89-2.15] mmHg increase	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	2q14.1	2	114223390	ACTR3, DPP10	LINC01191 - SEPHS1P7	440900	391428		      216.08	       36.66	rs3105491-T	rs3105491	0	3105491	Intergenic	1	0.3	2E-6	5.698970004336018		   1.52	[0.89-2.15] mmHg increase	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	2q31.1	2	168996710	ABCB11	ABCB11			8647			rs11568377-A	rs11568377	0	11568377	missense	0	0.17	4E-6	5.397940008672037		   1.64	[0.95-2.33] mmHg decrease	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	3p24.2	3	24226945	THRB	THRB;LOC101927854			7068;101927854			rs826221-A	rs826221	0	826221	intron;intron	0	0.93	7E-6	5.154901959985742		   2.66	[1.50-3.82] mmHg decrease	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	4q35.1	4	182339448	ODZ3	TENM3			55714			rs10520528-T	rs10520528	0	10520528	intron	0	0.43	2E-6	5.698970004336018		   1.30	[0.77-1.83] mmHg increase	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	6q25.1	6	150688753	PLEKHG1	PLEKHG1			57480			rs4869931-A	rs4869931	0	4869931	intron	0	0.47	8E-6	5.096910013008055		   1.21	[0.68-1.74] mmHg increase	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	8p23.2	8	3234062	CSMD1	CSMD1			64478			rs1442407-T	rs1442407	0	1442407	intron	0	0.1	8E-6	5.096910013008055		   1.98	[1.12-2.84] mmHg increase	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	9p24.2	9	2978377	KIAA0020, RFX3	CARM1P1			100130873			rs7045640-A	rs7045640	0	7045640		0	0.76	8E-6	5.096910013008055		   1.75	[0.99-2.51] mmHg decrease	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	11q23.2	11	113553836	DRD2, MIR4301	MIR4301 - TMPRSS5	100422855	80975		      103.75	      133.71	rs7952106-G	rs7952106	0	7952106	Intergenic	1	0.23	9E-7	6.045757490560675		   1.54	[0.93-2.15] mmHg increase	Illumina [1,019,297] (imputed)	N
03/25/2014	24058526	Bhatnagar P	09/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24058526	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	12p13.2	12	10018128	CLEC12B	CLEC12B;LOC102724020			387837;102724020			rs11053548-A	rs11053548	0	11053548	intron;intron	0	0.91	5E-6	5.301029995663981		   2.12	[1.22-3.02] mmHg increase	Illumina [1,019,297] (imputed)	N
03/23/2014	24037343	Chang AL	09/13/2013	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/24037343	Identification of genes promoting skin youthfulness by genome-wide association study.	Skin youthfulness	218 Ashkenazi Jewish cases, 210 Ashkenazi Jewish controls	408 Ashkenazi Jewish cases, 399 Ashkenazi Jewish controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [901,470]	N
04/01/2014	24039173	McGrath LM	09/13/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24039173	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NR	3q24	3	147098924	Intergenic	PLSCR5 - RPL21P71	389158	729962		      492.71	      177.80	rs4681346-?	rs4681346	0	4681346	Intergenic	1	NR	3E-6	5.522878745280337	(MCS)	NR	NR	Affymetrix [1,633,452] (Imputed)	N
04/01/2014	24039173	McGrath LM	09/13/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24039173	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NR	1q23.3	1	161493797	HSPA6, FCGR3A, FCGR2A	TRNAG25 - FCGR2A	100189274	2212		       13.16	       11.62	rs7535475-?	rs7535475	0	7535475	Intergenic	1	NR	3E-6	5.522878745280337	(MCS)	NR	NR	Affymetrix [1,633,452] (Imputed)	N
04/01/2014	24039173	McGrath LM	09/13/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24039173	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NR	8q24.22	8	133462834	ST3GAL1	ST3GAL1			6482			rs2736871-?	rs2736871	0	2736871	intron	0	NR	3E-6	5.522878745280337	(MCS)	NR	NR	Affymetrix [1,633,452] (Imputed)	N
04/01/2014	24039173	McGrath LM	09/13/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24039173	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NR	5p15.32	5	5297087	ADAMTS16	ADAMTS16			170690			rs16875288-?	rs16875288	0	16875288	intron	0	NR	6E-8	7.221848749616355	(PCS)	NR	NR	Affymetrix [1,633,452] (Imputed)	N
04/01/2014	24039173	McGrath LM	09/13/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/24039173	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NR	17p13.2	17	4104300	ZZEF1, CYB5D2, ANKFY1	ZZEF1			23140			rs7221595-?	rs7221595	0	7221595	intron	0	NR	5E-6	5.301029995663981	(PCS)	NR	NR	Affymetrix [1,633,452] (Imputed)	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill	2,666 European ancestry individuals 	NA	Xq26.2	23	133991764	GPC3	RPSAP63 - TIMM8BP2	100270755	100874417		      228.01	      174.92	rs7883190-?	rs7883190	0	7883190	Intergenic	1	0.62	2E-6	5.698970004336018		    .12	[0.071-0.169] unit increase	Illumina [NR] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill	2,666 European ancestry individuals 	NA	20p12.2	20	11228874	LOC339593	FAT1P1 - RPS11P1	170513	128718		      339.78	      116.51	rs6040449-?	rs6040449	0	6040449	Intergenic	1	0.63	4E-6	5.397940008672037		    .14	[0.081-0.199] unit increase	Illumina [NR] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill	2,666 European ancestry individuals 	NA	20q13.2	20	54794480	Intergenic	DOK5 - RPL12P4	55816	116149		      143.31	      280.08	rs13037755-?	rs13037755	0	13037755	Intergenic	1	0.71	5E-6	5.301029995663981		    .26	[0.15-0.37] unit increase	Illumina [NR] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	17q24.3	17	72588126	LOC100499467, SLC39A11, LINC00511	LINC00673			100499467			rs718073-?	rs718073	0	718073	intron	0	0.84	5E-6	5.301029995663981		    .35	[0.20-0.50] unit increase	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	17p13.1	17	10664166	MYH3, MAGOH2, SCO1, TMEM220, C17orf48	MYH3 - SCO1	4621	6341		        6.86	       16.17	rs169313-?	rs169313	0	169313	Intergenic	1	0.44	8E-6	5.096910013008055		    .25	[0.14-0.36] unit increase	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	15q26.3	15	101325267	PCSK6, VIMP, LOC100507472, CHSY1, SNRPA1	PCSK6			5046			rs7182874-T	rs7182874	0	7182874	intron	0	0.71	9E-9	8.045757490560675		    .37	[0.24-0.50] unit decrease	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	NR			Intergenic	 - 						 rs10802047-?	 rs10802047					0.38	2E-6			    .25	[0.15-0.36] unit decrease	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	3p25.3	3	11652993	VGLL4, ATG7	VGLL4			9686			rs4684792-?	rs4684792	0	4684792	intron	0	0.18	9E-6	5.045757490560675		    .28	[0.16-0.4] unit decrease	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	7p22.1	7	5485174	FBXL18, TNRC18, ACTB, MIR589	FBXL18			80028			rs10216189-?	rs10216189	0	10216189	intron	0	0.39	4E-6	5.397940008672037		    .24	[0.14-0.34] unit decrease	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	11p13	11	35473893	PAMR1, SLC1A2	PAMR1			25891			rs1996369-?	rs1996369	0	1996369	intron	0	0.21	9E-6	5.045757490560675		    .27	[0.15-0.39] unit increase	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	14q11.2	14	22487722	DAD1	LOC101929755			101929755			rs227869-?	rs227869	0	227869	intron	0	0.32	4E-6	5.397940008672037		    .25	[0.14-0.36] unit decrease	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	15q21.3	15	56444280	MNS1, TEX9	MNS1;TEX9			55329;374618			rs6493858-?	rs6493858	0	6493858	intron;intron	0	0.41	4E-6	5.397940008672037		    .25	[0.14-0.35] unit increase	Illumina [2,095,209] 	N
04/02/2014	24068947	Brandler WM	09/12/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/24068947	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability 	NR	16q21	16	62764948	Intergenic	LOC102723560			102723560			rs2962462-?	rs2962462	0	2962462	intron	0	0.56	2E-6	5.698970004336018		    .29	[0.17-0.41] unit increase	Illumina [2,095,209] 	N
03/22/2014	24029427	Sandholm N	09/12/2013	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/24029427	Chromosome 2q31.1 associates with ESRD in women with type 1 diabetes.	End-stage renal disease in Type 1 diabetics	258 European ancestry female cases, 935 European ancestry female controls, 387 European ancestry male cases, 655 European ancestry male controls	178 European ancestry female cases, 594 European ancestry female controls, 251 European ancestry male cases, 494 European ancestry male controls, 252 female cases, 479 female controls, 256 male cases, 342 male controls	2q31.1	2	173598126	SP3, CDCA7	CDCA7 - RPL5P7	83879	344178		      229.14	      273.45	rs4972593-A	rs4972593	0	4972593	Intergenic	1	0.14	4E-8	7.397940008672037	(Women)	   1.81	[1.47-2.24] 	Illumina [2.4 Million] (imputed)	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	12q13.13	12	54293448	COPZ1, NFE2	NFE2			4778			rs10506328-C	rs10506328	0	10506328	intron	0	0.64	2E-9	8.698970004336019		    .09	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	1q24.3	1	171980610	DNM3	DNM3			26052			rs10914144-T	rs10914144	0	10914144	intron	0	NR	2E-8	7.698970004336018		    .11	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	1q32.1	1	205280322	TMCC2, CNTN2, RBBP5, RIPK5	TMCC2 - NUAK2	9911	81788		        6.98	       21.74	rs9660992-A	rs9660992	0	9660992	Intergenic	1	0.57	3E-13	12.52287874528034		    .11	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	4p16.1	4	6889792	KIAA0232	KIAA0232 - TBC1D14	9778	57533		        5.62	       19.65	rs11734132-G	rs11734132	0	11734132	Intergenic	1	NR	6E-7	6.221848749616355		    .10	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	3p14.3	3	56815721	ARHGEF3	ARHGEF3			50650			rs1354034-C	rs1354034	0	1354034	intron	0	0.61	9E-34	33.04575749056067		    .19	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	7q22.3	7	106731773	FLJ36031, PIK3CG	CCDC71L - RNA5SP236	168455	100873494		       70.59	       49.83	rs342293-A	rs342293	0	342293	Intergenic	1	0.56	5E-22	21.30102999566398		    .15	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	20q13.32	20	59012716	CTSZ	CTSZ - TUBB1	1522	81027		        5.46	        6.54	rs4812048-C	rs4812048	0	4812048	Intergenic	1	NR	7E-6	5.154901959985742		    .09	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	2p23.1	2	31241519	EHD3	EHD3			30845			rs649729-A	rs649729	0	649729	intron	0	NR	4E-6	5.397940008672037		    .07	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	10q21.3	10	63290899	JMJD1C, NRBF2, REEP3	JMJD1C			221037			rs7075195-A	rs7075195	0	7075195	intron	0	NR	3E-18	17.52287874528034		    .13	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	12q24.31	12	121927677	WDR66, TMEM120B, SETD1B, PSMD9, BCL7A	WDR66			144406			rs7961894-T	rs7961894	0	7961894	intron	0	0.89	6E-38	37.22184874961636		    .31	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	17q11.2	17	29442580	TAOK1	TAOK1			57551			rs9900280-G	rs9900280	0	9900280	intron	0	0.52	1E-10	10		    .10	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	10q21.3	10	63267850	JMJD1C	JMJD1C			221037			rs10761731-A	rs10761731	0	10761731	intron	0	NR	2E-6	5.698970004336018		   3.81	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	18q11.2	18	23141009	CABLES1	CABLES1			91768			rs11082304-T	rs11082304	0	11082304	intron	0	NR	5E-6	5.301029995663981		   3.49	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	9p24.1	9	4792339	RCL1	RCL1			10171			rs423955-G	rs423955	0	423955	nearGene-5	0	0.66	1E-9	8.999999999999998		   4.94	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	3p14.3	3	56815721	ARHGEF3	ARHGEF3			50650			rs1354034-T	rs1354034	0	1354034	intron	0	0.61	6E-24	23.22184874961635		   7.97	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	6p21.31	6	33572432	BAK1	BAK1			578			rs210134-A	rs210134	0	210134	nearGene-3	0	NR	6E-8	7.221848749616355		   4.66	[NR] unit increase	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	12q24.12	12	111446804	SH2B3, ATXN2	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.5	5E-11	10.30102999566398		   5.33	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	6q23.3	6	135097880	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-T	rs9399137	0	9399137	Intergenic	1	NR	8E-10	9.096910013008054		   5.51	[NR] unit decrease	Illumina [476,395]	N
03/25/2014	24026423	Shameer K	09/12/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24026423	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet counts	13,582 European ancestry individuals	NA	11p15.5	11	202856	BET1L, PSMD13, SIRT3, RIC8A, ODF3, SCGB1C1	BET1L			51272			rs11602954-A	rs11602954	0	11602954	intron	0	0.78	5E-12	11.30102999566398		   6.46	[NR] unit decrease	Illumina [476,395]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia)	303 Japanese ancestry cases, 880 Japanese ancestry controls	23 Japanese ancestry cases	2q23.3	2	152100897	CACNB4	CACNB4			785			rs3820706-G	rs3820706	0	3820706	nearGene-5	0	0.57	2E-9	8.698970004336019	(Recessive)	   2.38	[1.44-3.93] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia)	303 Japanese ancestry cases, 880 Japanese ancestry controls	23 Japanese ancestry cases	2q23.3	2	152124821	STAM2	STAM2			10254			rs16830728-T	rs16830728	0	16830728	intron	0	0.59	3E-8	7.522878745280337	(Recessive)	   3.61	[2.17-5.98] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia)	303 Japanese ancestry cases, 880 Japanese ancestry controls	23 Japanese ancestry cases	10q21.1	10	54444531	PCDH15	PCDH15			65217			rs7476422-G	rs7476422	0	7476422	intron	0	0.82	3E-7	6.522878745280337	(Allelic)	   2.06	[1.54-2.75] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	9q31.2	9	106914612	ZNF462	ZNF462			58499			rs1858231-C	rs1858231	0	1858231	intron	0	0.22	2E-6	5.698970004336018	(Allelic)	   2.71	[1.79-4.12] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	11q14.2	11	86477110	ME3	ME3			10873			rs1870323-T	rs1870323	0	1870323	intron	0	0.64	2E-6	5.698970004336018	(Allelic)	   2.92	[1.87-4.57] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	15q25.3	15	85919621	KLHL25	MIR548AP - RNA5SP400	100847084	100873653		       93.89	      218.65	rs4262906-C	rs4262906	0	4262906	Intergenic	1	0.35	3E-6	5.522878745280337	(Allelic)	   2.50	[1.71-3.67] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	5q14.3	5	86881956	RPL10AP9	MIR3607 - RPL10AP9	100500805	728979		      261.38	        2.25	rs2471042-T	rs2471042	0	2471042	Intergenic	1	0.21	5E-6	5.301029995663981	(Dominant)	   2.51	[1.64-3.81] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	10p14	10	8282926	LOC100507143	LINC00708 - KRT8P37	100507143	100287325		       14.62	      230.57	rs11255615-G	rs11255615	0	11255615	Intergenic	1	0.38	5E-6	5.301029995663981	(Allelic)	   2.40	[1.65-3.53] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	5q14.3	5	86878330	RPL10AP9	MIR3607 - RPL10AP9	100500805	728979		      257.76	        5.88	rs1493354-T	rs1493354	0	1493354	Intergenic	1	0.22	9E-6	5.045757490560675	(Dominant)	   2.37	[1.56-3.6] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	18q21.33	18	63509033	SERPINB5	ATP5G1P6 - SERPINB12	100505704	89777		       11.54	       47.13	rs2032224-A	rs2032224	0	2032224	Intergenic	1	0.62	9E-6	5.045757490560675	(Recessive)	   2.16	[1.42-3.27] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	1q21.2	1	147548685	BCL9	BCL9			607			rs594206-A	rs594206	0	594206	intron	0	0.78	6E-7	6.221848749616355	(Dominant)	  36.30	[4.58-287] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	1p31.1	1	70421416	CTH	CTH			1491			rs672203-A	rs672203	0	672203	intron	0	0.52	2E-6	5.698970004336018	(Dominant)	   5.33	[2.59-11.0] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	9p24.2	9	2203938	SMARCA2	SMARCA2 - VLDLR-AS1	6595	401491		       10.31	      331.71	rs6475600-C	rs6475600	0	6475600	Intergenic	1	0.63	2E-6	5.698970004336018	(Allelic)	   7.78	3.25-18.6] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	4p15.31	4	18864546	LCORL	KRT18P63 - RPL21P46	100288868	645174		      951.50	      949.19	rs6845621-C	rs6845621	0	6845621	Intergenic	1	0.20	2E-6	5.698970004336018	(Allelic)	   5.53	[2.61-11.7] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	9q33.3	9	123933491	DENND1A	PIGFP2 - LHX2	100422349	9355		       89.61	       78.12	rs10818894-G	rs10818894	0	10818894	Intergenic	1	0.70	2E-6	5.698970004336018	(Dominant)	  10.40	[3.56-30.1] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	8p23.2	8	5017650	LOC100129861	PAICSP4 - RSL24D1P7	780813	100129861		      175.75	       53.64	rs10112481-A	rs10112481	0	10112481	Intergenic	1	0.22	4E-6	5.397940008672037	(Allelic)	   5.12	[2.46-10.6] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	18q22.1	18	65231430	CDH7	LINC00305 - CDH7	221241	1005		     1082.40	      518.82	rs637644-G	rs637644	0	637644	Intergenic	1	0.80	7E-6	5.154901959985742	(Allelic)	  32.50	[4.08-259] 	Illumina [555,600]	N
03/27/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	16q23.3	16	83292454	CDH13	CDH13			1012			rs11644424-T	rs11644424	0	11644424	intron	0	0.44	8E-6	5.096910013008055	(Dominant)	   3.32	[1.71-6.44] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU)	116 Japanese ancestry cases, 108 Japanese ancestry controls	NA	13q12.3	13	30740318	ALOX5AP	ALOX5AP			241			rs3885907-G	rs3885907	0	3885907	intron	0	0.18	1E-6	5.999999999999999	(Dominant)	   2.66	[1.71-4.13] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU)	116 Japanese ancestry cases, 108 Japanese ancestry controls	NA	1p21.3	1	94615889	LOC100130235	LOC102723542			102723542			rs4474258-A	rs4474258	0	4474258	nearGene-3	0	0.43	5E-6	5.301029995663981	(Recessive)	   1.89	[1.29-2.75] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU)	116 Japanese ancestry cases, 108 Japanese ancestry controls	NA	10p13	10	13625731	PRPF18	PRPF18			8559			rs7089227-G	rs7089227	0	7089227	intron	0	0.41	7E-6	5.154901959985742	(Dominant)	   1.99	[1.37-2.90] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	15q25.3	15	85919621	KLHL25	MIR548AP - RNA5SP400	100847084	100873653		       93.89	      218.65	rs4262906-C	rs4262906	0	4262906	Intergenic	1	0.31	7E-7	6.154901959985743	(Allelic)	   4.36	[2.41-7.89] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	3q21.3	3	127231283	C3orf56	C3orf56 - TPRA1	285311	131601		       33.10	      341.78	rs4234284-T	rs4234284	0	4234284	Intergenic	1	0.23	3E-6	5.522878745280337	(Dominant)	   3.01	[1.62-5.6] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	20p13	20	778672	C20orf54	SLC52A3 - FAM110A	113278	83541		        2.66	       55.03	rs6117615-C	rs6117615	0	6117615	Intergenic	1	0.24	7E-6	5.154901959985742	(Dominant)	   3.89	[2.1-7.18] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	1p32.2	1	55647101	LOC100507652	GOT2P1 - RPSAP20	645538	127406		      278.33	      560.37	rs10443215-C	rs10443215	0	10443215	Intergenic	1	0.04	9E-6	5.045757490560675	(Allelic)	   9.39	[2.77-31.8] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	12q24.32	12	128297477	TMEM132C	TMEM132C			92293			rs11059635-G	rs11059635	0	11059635	intron	0	0.67	2E-7	6.698970004336019	(Dominant)	   6.63	[2.95-14.9] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	16q23.3	16	82612728	CDH13	MPHOSPH6 - CDH13	10200	1012		      442.50	       14.07	rs3844412-A	rs3844412	0	3844412	Intergenic	1	0.11	4E-7	6.397940008672037	(Dominant)	   5.22	[2.67-10.2] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	5p15.2	5	14071948	TRIO	DNAH5 - TRIO	1767	7204		       60.22	       71.76	rs163818-C	rs163818	0	163818	Intergenic	1	0.02	6E-7	6.221848749616355	(Dominant)	  11.50	[3.37-39.3] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	2p21	2	44478476	C2orf34	CAMKMT			79823			rs698813-C	rs698813	0	698813	intron	0	0.52	1E-6	5.999999999999999	(Allelic)	   4.27	[2.35-7.76] 	Illumina [555,600]	N
03/26/2014	24025145	Chung S	09/11/2013	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/24025145	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	21q22.3	21	41672041	NCRNA00111	TMPRSS2 - LINC00111	7113	54090		      163.88	        7.26	rs2838088-A	rs2838088	0	2838088	Intergenic	1	0.12	1E-6	5.999999999999999	(Dominant)	   4.48	[2.32-8.66] 	Illumina [555,600]	N
04/02/2014	24024963	Eicher JD	09/11/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/24024963	Genome-wide association study of shared components of reading disability and language impairment.	Reading disability and language impairment	174 European ancestry cases, 4,117 European ancestry controls	440 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to 500,527]	N
03/22/2014	24023261	Keller M	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023261	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 Sorb individuals	up to 5,248 European ancestry individuals	22q12.2	22	29533250	THOC5	THOC5			8563			rs8135828-A	rs8135828	0	8135828	intron	0	0.15	2E-7	6.698970004336019	(HDL-C)	    .11	[0.034-0.186] unit decrease	Affymetrix [390,619]	N
03/22/2014	24023261	Keller M	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023261	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 Sorb individuals	up to 5,248 European ancestry individuals	16q13	16	56951227	CETP	HERPUD1 - CETP	9709	1071		        7.35	       10.70	rs9989419-A	rs9989419	0	9989419	Intergenic	1	0.42	5E-11	10.30102999566398	(HDL-C)	   6.57	 unit decrease	Affymetrix [390,619]	N
03/22/2014	24023261	Keller M	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023261	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 Sorb individuals	up to 5,248 European ancestry individuals	9p21.3	9	21499625	IFNE1	MIR31HG			554202			rs7849420-A	rs7849420	0	7849420	intron	0	0.36	1E-6	5.999999999999999	(HDL-C)	   4.88	 unit increase	Affymetrix [390,619]	N
03/22/2014	24023261	Keller M	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023261	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 Sorb individuals	up to 5,248 European ancestry individuals	19q13.32	19	44919689	APOC1	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.17	1E-14	14	(LDL-C)	    .25	 unit increase	Affymetrix [390,619]	N
03/22/2014	24023261	Keller M	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023261	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 Sorb individuals	up to 5,248 European ancestry individuals	8p21.3	8	19975135	LPL	LPL - RPL30P9	4023	100270981		        7.88	      138.20	rs17482753-T	rs17482753	0	17482753	Intergenic	1	0.09	6E-10	9.221848749616356	(Triglycerides)	   -.24	 unit decrease	Affymetrix [390,619]	N
03/22/2014	24023261	Keller M	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023261	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 Sorb individuals	up to 5,248 European ancestry individuals	11q23.3	11	116748357	BUD13	BUD13			84811			rs28927680-G	rs28927680	0	28927680	ncRNA	0	0.09	3E-7	6.522878745280337	(Triglycerides)	    .22	 unit increase	Affymetrix [390,619]	N
04/04/2014	24023260	Wu Y	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023260	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	19q13.32	19	44908822	APOE	APOE			348			rs7412-T	rs7412	0	7412	missense	0	0.12	3E-53	52.52287874528033	(LDL-C)	    .48	[0.42-0.54] unit decrease	Affymetrix [~3.7 million] (Imputed)	N
04/04/2014	24023260	Wu Y	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023260	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	19q13.32	19	44908822	APOE	APOE			348			rs7412-T	rs7412	0	7412	missense	0	0.12	2E-30	29.69897000433602	(TC)	    .09	[0.070-0.110] unit decrease	Affymetrix [~3.7 million] (Imputed)	N
04/04/2014	24023260	Wu Y	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023260	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	11q23.3	11	116792991	APOA5	APOA5			116519			rs662799-A	rs662799	0	662799	nearGene-5	0	0.76	6E-24	23.22184874961635	(TG)	    .14	[0.12-0.16] unit decrease	Affymetrix [~3.7 million] (Imputed)	N
04/04/2014	24023260	Wu Y	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023260	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	2p23.3	2	27520287	GCKR	GCKR			2646			rs780092-A	rs780092	0	780092	intron	0	0.68	2E-9	8.698970004336019	(TG)	    .08	[0.060-0.100] unit increase	Affymetrix [~3.7 million] (Imputed)	N
04/04/2014	24023260	Wu Y	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023260	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	16q13	16	56961324	CETP	CETP			1071			rs1800775-A	rs1800775	0	1800775	nearGene-5	0	0.4	3E-9	8.522878745280337	(HDL-C)	    .04	[0.020-0.060] unit increase	Affymetrix [~3.7 million] (Imputed)	N
04/04/2014	24023260	Wu Y	09/10/2013	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/24023260	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	15q21.3	15	58438299	LIPC	LIPC;LOC101928694			3990;101928694			rs588136-?	rs588136	0	588136	intron;intron	0	0.69	2E-12	11.69897000433602	(HDL-C)	    .05	[0.030-0.070] unit decrease	Affymetrix [~3.7 million] (Imputed)	N
03/22/2014	24015780	Wetherill L	09/09/2013	Alcohol Clin Exp Res	http://www.ncbi.nlm.nih.gov/pubmed/24015780	Family-based association analysis of alcohol dependence criteria and severity.	Alcohol dependence	up to 2,322 European ancestry individuals from 118 families	2,647 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [591,785]	N
03/24/2014	24080187	Guffanti G	09/08/2013	Psychoneuroendocrinology	http://www.ncbi.nlm.nih.gov/pubmed/24080187 	Genome-wide association study implicates a novel RNA gene, the lincRNA AC068718.1, as a risk factor for post-traumatic stress disorder in women.	Post-traumatic stress disorder	81 African American female cases, 261 African American female controls, 10 European ancestry female cases, 35 European ancestry female controls, 3 female cases, 22 female controls	578 European ancestry female cases, 1,963 European ancestry female controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [688,890]	N
03/22/2014	24014518	Kasperaviciute D	09/06/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/24014518	Epilepsy, hippocampal sclerosis and febrile seizures linked by common genetic variation around SCN1A.	Mesial temporal lobe epilepsy with hippocampal sclerosis	up to 1,018 European ancestry cases, 7,552 European ancestry controls	959 European ancestry cases, 3,591 European ancestry controls	2q24.3	2	166122240	SCN1A	SCN1A;LOC101929680			6323;101929680			rs7587026-A	rs7587026	0	7587026	intron;intron	0	0.263	4E-8	7.397940008672037	(MTLEHS vs. Controls)	   1.24	[1.15-1.34] 	Illumina [531,164]	N
03/22/2014	24014518	Kasperaviciute D	09/06/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/24014518	Epilepsy, hippocampal sclerosis and febrile seizures linked by common genetic variation around SCN1A.	Mesial temporal lobe epilepsy with hippocampal sclerosis	up to 1,018 European ancestry cases, 7,552 European ancestry controls	959 European ancestry cases, 3,591 European ancestry controls	2q24.3	2	166122240	SCN1A	SCN1A;LOC101929680			6323;101929680			rs7587026-A	rs7587026	0	7587026	intron;intron	0	0.263	3E-9	8.522878745280337	(MTLEHS+FS vs. Controls)	   1.42	[1.26-1.59] 	Illumina [531,164]	N
04/02/2014	24023777	Miyake A	09/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023777	Identification of a susceptibility locus for severe adolescent idiopathic scoliosis on chromosome 17q24.3.	Adolescent idiopathic scoliosis (severe)	554 Japanese ancestry cases, 1,474 Japanese ancestry controls	839 East Asian ancestry cases, 10,149 East Asian ancestry controls	17q24.3	17	71240857	SOX9, KCNJ2	CASC17 - LINC01152	101928165	102606463		       38.68	      789.80	rs12946942-T	rs12946942	0	12946942	Intergenic	1	0.213	6E-12	11.22184874961635		   2.21	[1.76-2.77] 	Illumina [455,121]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	6p12.3	6	51757651	PKHD1	PKHD1			5314			rs2025751-A	rs2025751	0	2025751	intron	0	0.46	7E-7	6.154901959985743		    .60	[0.33-0.87] mmHg increase	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	1q24.1	1	165767643	TMCO1	TMCO1;LOC100147773			54499;100147773			rs7518099-G	rs7518099	0	7518099	intron;nearGene-5	0	0.14	8E-8	7.096910013008055		    .94	[0.55-1.33] mmHg increase	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	15q14	15	37367848	MEIS2	MIR8063 - RPS15P8	102466875	390576		      394.95	      122.83	rs587847-C	rs587847	0	587847	Intergenic	1	0.38	1E-6	5.999999999999999		    .69	[0.42-0.96] mmHg decrease	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	8q24.11	8	117077274	SLC30A8	SLC30A8			169026			rs7815720-A	rs7815720	0	7815720	intron	0	0.13	2E-6	5.698970004336018		   1.02	[0.61-1.43] mmHg decrease	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	6q23.3	6	136183898	PDE7B	PDE7B			27115			rs560713-A	rs560713	0	560713	intron	0	0.32	2E-6	5.698970004336018		    .53	[0.24-0.82] mmHg decrease	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	17p13.1	17	10127773	GAS7	GAS7			8522			rs12150284-A	rs12150284	0	12150284	intron	0	0.35	2E-6	5.698970004336018		    .62	[0.33-0.91] mmHg decrease	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	16p13.3	16	6058429	A2BP1	RBFOX1			54715			rs1906060-G	rs1906060	0	1906060	intron	0	0.2	4E-6	5.397940008672037		    .59	[0.24-0.94] mmHg increase	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	8q24.22	8	133603507	ST3GAL1	ST3GAL1 - MTND2P7	6482	100873179		       31.05	      151.23	rs2945733-A	rs2945733	0	2945733	Intergenic	1	0.13	4E-6	5.397940008672037		    .51	[0.098-0.922] mmHg increase	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	3p13	3	71006011	FOXP1	FOXP1			27086			rs13093086-A	rs13093086	0	13093086	intron	0	0.49	5E-6	5.301029995663981		    .57	[0.30-0.84] mmHg decrease	Illumina [466,573]	N
04/01/2014	24002674	Ozel AB	09/04/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24002674	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NR	14q11.2	14	21767650	TRAJ17	TRA			6955			rs718433-G	rs718433	0	718433		0	0.39	8E-6	5.096910013008055		    .59	[0.32-0.86] mmHg decrease	Illumina [466,573]	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102316102	IL1RL1	IL1RL1			9173			rs950880-A	rs950880	0	950880	intron	0	0.39	7E-94	93.15490195998574		    .18	[0.16-0.20] unit decrease	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102340831	IL1RL1	IL1RL1			9173			rs13029918-G	rs13029918	0	13029918	intron	0	0.05	2E-39	38.69897000433601		    .29	[0.25-0.33] unit decrease	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102332172	IL1RL1	IL1RL1			9173			rs1420103-A	rs1420103	0	1420103	intron	0	0.23	1E-35	35		    .13	[0.11-0.15] unit increase	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102532641	SLC9A4	SLC9A4			389015			rs1014286-G	rs1014286	0	1014286	missense	0	0.36	3E-33	32.52287874528034		    .11	[0.09-0.13] unit increase	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102336984	IL1RL1	IL1RL1			9173			rs17639215-A	rs17639215	0	17639215	intron	0	0.13	2E-30	29.69897000433602		    .15	[0.13-0.17] unit increase	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102348932	IL1RL1	IL1RL1			9173			rs12999542-C	rs12999542	0	12999542	intron	0	0.11	2E-27	26.69897000433602		    .15	[0.13-0.17] unit decrease	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102159742	IL1R1	IL1R1			3554			rs13019803-T	rs13019803	0	13019803	intron	0	0.11	6E-20	19.22184874961636		    .14	[0.1-0.18] unit decrease	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102193708	IL1RL2	IL1RL2			8808			rs1558648-G	rs1558648	0	1558648	intron	0	0.12	4E-16	15.39794000867204		    .13	[0.091-0.169] unit decrease	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102235248	IL1RL2	IL1RL2			8808			rs2302612-C	rs2302612	0	2302612	missense	0	0.17	2E-11	10.69897000433602		    .08	[0.06-0.1] unit decrease	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102299202	IL1RL1	IL1RL2 - IL1RL1	8808	9173		       59.20	       12.30	rs11693697-C	rs11693697	0	11693697	Intergenic	1	0.22	7E-11	10.15490195998574		    .08	[0.06-0.1] unit decrease	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	2q12.1	2	102438307	IL18RAP	IL18RAP			8807			rs11465699-A	rs11465699	0	11465699	intron	0	0.06	2E-8	7.698970004336018		    .14	[0.1-0.18] unit increase	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	1q31.3	1	197660212	DENND1B	DENND1B			163486			rs1775453-C	rs1775453	0	1775453	intron	0	0.26	2E-7	6.698970004336019		NR	NR	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	1p22.2	1	88186088	PKN2	LMO4 - RPL36AP10	8543	100271140		      837.17	      391.76	rs10923038-C	rs10923038	0	10923038	Intergenic	1	0.34	4E-7	6.397940008672037		NR	NR	Affymetrix [2.5 million] (Imputed)	N
04/04/2014	23999434	Ho JE	09/03/2013	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/23999434	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NR	18p11.22	18	10382886	APCDD1	RNA5SP450 - LINC01254	100873695	101927350		      458.87	       22.25	rs206548-T	rs206548	0	206548	Intergenic	1	0.48	9E7	-7.954242509439324		NR	NR	Affymetrix [2.5 million] (Imputed)	N
03/26/2014	24001895	Kelly TN	09/03/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/24001895	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	10q24.32	10	102836092	CYP17A1	CYP17A1			1586			rs3824755-C	rs3824755	0	3824755	intron	0	0.32	1E-6	5.999999999999999	(MAP)	    .50	[0.3-0.7] mm of mercury decrease	Affymetrix & Illumina [~2.4 million] (Imputed)	N
03/26/2014	24001895	Kelly TN	09/03/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/24001895	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	10q24.33	10	103179458	NT5C2	NT5C2			22978			rs11191593-T	rs11191593	0	11191593	intron	0	0.74	1E-6	5.999999999999999	(MAP)	    .54	[0.32-0.76] mm of mercury increase	Affymetrix & Illumina [~2.4 million] (Imputed)	N
03/26/2014	24001895	Kelly TN	09/03/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/24001895	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	12q21.33	12	89666809	ATP2B1	ATP2B1			490			rs17249754-A	rs17249754	0	17249754	intron	0	0.35	7E-15	14.15490195998574	(MAP)	    .80	[0.6-1] mm of mercury decrease	Affymetrix & Illumina [~2.4 million] (Imputed)	N
03/26/2014	24001895	Kelly TN	09/03/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/24001895	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	8q24.22	8	134857733	MIR30D	LOC101927845			101927845			rs12541063-A	rs12541063	0	12541063	intron	0	0.39	3E-6	5.522878745280337	(PP)	    .81	[0.48-1.14] mm of mercury decrease	Affymetrix & Illumina [~2.4 million] (Imputed)	N
03/26/2014	24001895	Kelly TN	09/03/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/24001895	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	10q21.1	10	57964643	MRPS35P3	MIR3924 - MRPS35P3	100500834	359779		      660.08	       17.83	rs7088591-A	rs7088591	0	7088591	Intergenic	1	0.97	9E-7	6.045757490560675	(PP)	   1.44	[0.87-2.01] mm of mercury decrease	Affymetrix & Illumina [~2.4 million] (Imputed)	N
03/26/2014	24001895	Kelly TN	09/03/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/24001895	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	13q21.1	13	55410861	MIR5007	MIR5007 - HNF4GP1	100846996	100130462		      236.31	      585.63	rs2315885-T	rs2315885	0	2315885	Intergenic	1	0.06	2E-6	5.698970004336018	(PP)	   1.41	[0.84-1.98] mm of mercury increase	Affymetrix & Illumina [~2.4 million] (Imputed)	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	9q22.33	9	99275688	NR	SEC61B - KRT8P11	10952	347265		       45.07	       29.40	rs10819643-?	rs10819643	0	10819643	Intergenic	1	NR	1E-6	5.999999999999999	(EA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	3p25.1	3	16150636	NR	IMPDH1P8 - GALNT15	131961	117248		      270.34	       23.94	rs6771632-?	rs6771632	0	6771632	Intergenic	1	NR	9E-6	5.045757490560675	(EA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	22q13.33	22	50223440	NR	TUBGCP6			85378			rs5771242-?	rs5771242	0	5771242	intron	0	NR	1E-6	5.999999999999999	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	3q25.1	3	151324676	NR	MED12L			116931			rs12107539-?	rs12107539	0	12107539	intron	0	NR	4E-6	5.397940008672037	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	3q13.32	3	118957645	NR	IGSF11			152404			rs4687833-?	rs4687833	0	4687833	intron	0	NR	4E-6	5.397940008672037	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	15q13.1	15	27960418	NR	OCA2			4948			rs4778214-?	rs4778214	0	4778214	intron	0	NR	9E-6	5.045757490560675	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	10q23.1	10	84961425	NR	RPS3AP5 - GRID1-AS1	439992	100507470		      400.12	      616.31	rs12266096-?	rs12266096	0	12266096	Intergenic	1	NR	6E-6	5.221848749616356	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	5q33.3	5	156755037	NR	SGCD			6444			rs11135380-?	rs11135380	0	11135380	intron	0	NR	9E-6	5.045757490560675	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	22q11.21	22	17800481	NR	MICAL3			57553			rs5992105-?	rs5992105	0	5992105	intron	0	NR	9E-6	5.045757490560675	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	14q22.2	14	54709626	NR	SAMD4A			23034			rs17657012-?	rs17657012	0	17657012	intron	0	NR	9E-6	5.045757490560675	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	17q23.2	17	61820094	NR	BRIP1			83990			rs12453935-?	rs12453935	0	12453935	intron	0	NR	9E-6	5.045757490560675	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow between 25% and 75% of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	13q33.3	13	108858711	NR	MYO16			23026			rs814141-?	rs814141	0	814141	intron	0	NR	5E-6	5.301029995663981	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second to forced vital capacity ratio)	1,015 European ancestry individuals, 541 African American individuals	NR	10q11.21	10	45058281	NR	LOC102724306			102724306			rs12358699-?	rs12358699	0	12358699	nearGene-5	0	NR	9E-6	5.045757490560675	(EA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second to forced vital capacity ratio)	1,015 European ancestry individuals, 541 African American individuals	NR	2q14.3	2	127762223	NR	WDR33			55339			rs13013415-?	rs13013415	0	13013415	intron	0	NR	3E-6	5.522878745280337	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second to forced vital capacity ratio)	1,015 European ancestry individuals, 541 African American individuals	NR	16p13.12	16	13145040	NR	SHISA9			729993			rs150063-?	rs150063	0	150063	intron	0	NR	9E-6	5.045757490560675	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second to forced vital capacity ratio)	1,015 European ancestry individuals, 541 African American individuals	NR	4q21.1	4	77420506	NR	FTLP9 - CXCL13	100462780	10563		      203.64	       91.25	rs7677281-?	rs7677281	0	7677281	Intergenic	1	NR	6E-6	5.221848749616356	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second to forced vital capacity ratio)	1,015 European ancestry individuals, 541 African American individuals	NR	2p12	2	78312540	NR	SNAR-H - CYCSP6	100170221	360159		      357.51	      100.24	rs2037723-?	rs2037723	0	2037723	Intergenic	1	NR	3E-6	5.522878745280337	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	4q24	4	105657597	INTS12, GSTCD	ARHGEF38			54848			rs1982346-?	rs1982346	0	1982346	intron	0	NR	1E-7	7		NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	8p22	8	18816221	NR	PSD3			23362			rs2638663-?	rs2638663	0	2638663	intron	0	NR	8E-7	6.096910013008056	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	2q33.3	2	204503735	NR	DSTNP5 - PARD3B	100132132	117583		      196.37	       42.06	rs4673301-?	rs4673301	0	4673301	Intergenic	1	NR	4E-6	5.397940008672037	(EA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	4q28.3	4	134026646	NR	PCDH10 - PABPC4L	57575	132430		      835.07	      169.69	rs1494978-?	rs1494978	0	1494978	Intergenic	1	NR	6E-6	5.221848749616356	(EA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	14q31.1	14	80120798	NR	TRNASUP6P - DIO2	100189470	1734		     1886.23	       76.73	rs10220309-?	rs10220309	0	10220309	Intergenic	1	NR	6E-6	5.221848749616356	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	2q31.3	2	181647129	NR	CERKL			375298			rs1441147-?	rs1441147	0	1441147	intron	0	NR	3E-6	5.522878745280337	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	12p13.2	12	11789786	NR	ETV6			2120			rs2856329-?	rs2856329	0	2856329	intron	0	NR	6E-6	5.221848749616356	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	3p14.1	3	63827978	NR	C3orf49			132200			rs7614311-?	rs7614311	0	7614311	intron	0	NR	6E-6	5.221848749616356	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory volume in 1 second)	1,015 European ancestry individuals, 541 African American individuals	NR	12q23.2	12	101626668	MYBPC1	MYBPC1			4604			rs10860757-?	rs10860757	0	10860757	intron	0	NR	7E-7	6.154901959985743	(EA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	18q12.1	18	28544724	CDH2	CDH2 - ARIH2P1	1000	390844		      367.24	      106.81	rs879500-?	rs879500	0	879500	Intergenic	1	NR	5E-6	5.301029995663981	(EA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	10q21.3	10	66204615	CTNNA3	CTNNA3			29119			rs1471384-?	rs1471384	0	1471384	intron	0	NR	4E-6	5.397940008672037	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	19q13.33	19	47845106	NR	CRX - TPRX2P	1406	503627		        1.78	       15.08	rs11668505-?	rs11668505	0	11668505	Intergenic	1	NR	2E-6	5.698970004336018	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	2q31.3	2	181647129	NR	CERKL			375298			rs1441147-?	rs1441147	0	1441147	intron	0	NR	9E-6	5.045757490560675	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	18q21.1	18	48790717	NR	CTIF			9811			rs12455557-?	rs12455557	0	12455557	intron	0	NR	6E-6	5.221848749616356	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	13q34	13	109919863	NR	RN7SKP10 - COL4A1	100873873	1282		        4.44	      229.10	rs7323507-?	rs7323507	0	7323507	Intergenic	1	NR	8E-6	5.096910013008055	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	8q22.1	8	96251190	NR	MTERFD1			51001			rs7814319-?	rs7814319	0	7814319	intron	0	NR	2E-6	5.698970004336018	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	3p14.1	3	63827978	NR	C3orf49			132200			rs7614311-?	rs7614311	0	7614311	intron	0	NR	1E-6	5.999999999999999	(AA)	NR	NR	Illumina [up to 524,000]	N
03/28/2014	24023788	Ong BA	09/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/24023788	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NR	7p22.1	7	4683903	NR	FOXK1			221937			rs9791644-?	rs9791644	0	9791644	intron	0	NR	3E-6	5.522878745280337	(AA)	NR	NR	Illumina [up to 524,000]	N
03/01/2014	23836404	Shulman JM	09/01/2013	JAMA Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23836404 	Genetic susceptibility for Alzheimer disease neuritic plaque pathology.	Alzheimer's disease (neuritic plaque pathology)	651 individuals	114 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [2,465,581] (Imputed)	N
12/10/2013	23740775	Xie G	09/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23740775	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	6p21.32	6	33087761	HLA-DPB1, HLA-DPB2, HSD17B8, RING1, COL11A2, RXRB, HLA-DOA, HLA-DPB1*04	HLA-DPB1			3115			rs9277554-C	rs9277554	0	9277554	UTR-3	0	0.708	2E-50	49.69897000433602		   4.17	[3.33-5.00] 	Illumina [287,802]	N
12/10/2013	23740775	Xie G	09/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23740775	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	4q35.1	4	182829876	DCTD	MIR1305 - DCTD	100302270	1635		      660.50	       60.22	rs4862110-C	rs4862110	0	4862110	Intergenic	1	0.174	2E-6	5.698970004336018		   1.44	[1.24-1.67] 	Illumina [287,802]	N
12/10/2013	23740775	Xie G	09/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23740775	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	7p12.1	7	51470190	COBL	CICP17 - POM121L12	642663	285877		       85.53	     1565.47	rs1949829-T	rs1949829	0	1949829	Intergenic	1	0.055	4E-7	6.397940008672037		   1.78	[1.42-2.24] 	Illumina [287,802]	N
12/10/2013	23740775	Xie G	09/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23740775	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	11q12.2	11	60824803	CCDC86	MS4A10 - CCDC86	341116	79080		       23.50	       17.15	rs595018-A	rs595018	0	595018	Intergenic	1	0.216	2E-7	6.698970004336019		   1.46	[1.27-1.69] 	Illumina [287,802]	N
12/10/2013	23740775	Xie G	09/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23740775	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	17p13.2	17	6238357	WSCD1	WSCD1 - BTF3P14	23302	100132641		      113.93	       84.06	rs7503953-A	rs7503953	0	7503953	Intergenic	1	0.171	2E-7	6.698970004336019		   1.50	[1.29-1.76] 	Illumina [287,802]	N
12/10/2013	23740775	Xie G	09/01/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23740775	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	528 European ancestry cases, 1,228 European ancestry controls	5q23.1	5	116423793	SEMA6A	HMGN2P27 - SEMA6A	100874471	57556		      205.50	       19.76	rs26595-T	rs26595	0	26595	Intergenic	1	0.56	2E-8	7.698970004336018		   1.35	[1.22-1.49] 	Illumina [287,802]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	8p21.2	8	23778768	Intergenic	NKX2-6 - STC1	137814	6781		       72.17	       63.15	rs218869-?	rs218869	0	218869	Intergenic	1	NR	4E-6	5.397940008672037		    .29	[NR] unit increase	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	4q22.3	4	96959258	MGC46496	COX7A2P2 - STPG2	1348	285555		       56.07	      224.86	rs7694207-?	rs7694207	0	7694207	Intergenic	1	NR	4E-6	5.397940008672037		    .28	[NR] unit increase	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	9q33.3	9	126095572	PBX3	PBX3 - MVB12B	5090	89853		      128.20	      231.27	rs10987149-?	rs10987149	0	10987149	Intergenic	1	NR	5E-6	5.301029995663981		    .28	[NR] unit increase	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	16q24.1	16	84762997	USP10	USP10			9100			rs12932018-?	rs12932018	0	12932018	cds-synon	0	NR	6E-6	5.221848749616356		    .25	[NR] unit increase	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	4q34.3	4	178480279	AGA	RNA5SP173 - LINC00290	100873437	728081		       73.45	     2583.81	rs2702449-?	rs2702449	0	2702449	Intergenic	1	NR	7E-6	5.154901959985742		    .28	[NR] unit increase	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	4p15.33	4	12772370	Intergenic	RNA5SP156 - HSP90AB2P	100873422	391634		     1358.21	      564.02	rs16887552-?	rs16887552	0	16887552	Intergenic	1	NR	8E-6	5.096910013008055		    .24	[NR] unit decrease	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	21q21.3	21	29222211	C21orf7	LINC00189			193629			rs2832270-?	rs2832270	0	2832270	intron	0	NR	8E-6	5.096910013008055		    .28	[NR] unit increase	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	18q21.2	18	52689042	DCC	DCC			1630			rs1460196-?	rs1460196	0	1460196	intron	0	NR	9E-6	5.045757490560675		    .27	[NR] unit increase	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	1q23.3	1	163083499	RGS4, RGS5	RGS4 - RGS5	5999	8490		        6.70	       58.80	rs2063142-?	rs2063142	0	2063142	Intergenic	1	NR	4E-6	5.397940008672037		    .29	[NR] unit decrease	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	15q26.2	15	94775357	MCTP2	RPL26P5 - LINC01197	654386	400456		      501.36	      503.93	rs17664713-?	rs17664713	0	17664713	Intergenic	1	NR	5E-6	5.301029995663981		    .28	[NR] unit decrease	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	15q13.1	15	29046299	APBA2	APBA2			321			rs1873283-?	rs1873283	0	1873283	intron	0	NR	6E-6	5.221848749616356		    .28	[NR] unit decrease	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	3p24.3	3	20095467	PCAF	KAT2B			8850			rs12636856-?	rs12636856	0	12636856	intron	0	NR	7E-6	5.154901959985742		    .28	[NR] unit decrease	Illumina and Affymetrix [1,348,798]	N
03/15/2014	24009623	Jiang J	08/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/24009623	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NR	6q13	6	72483449	RIMS1	RIMS1 - KCNQ5	22999	56479		       80.31	      138.39	rs1334346-?	rs1334346	0	1334346	Intergenic	1	NR	8E-6	5.096910013008055		    .28	[NR] unit decrease	Illumina and Affymetrix [1,348,798]	N
03/18/2014	23996088	Migliorini G	08/30/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23996088	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	10p12.2	10	22550699	PIP4K2A	PIP4K2A			5305			rs10828317-T	rs10828317	1	2230469	missense	0	0.68	2E-9	8.698970004336019		   1.23	[1.15-1.32] 	Illumina [382,776] (imputed)	N
03/18/2014	23996088	Migliorini G	08/30/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23996088	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	10p14	10	8062245	GATA3	GATA3			2625			rs3824662-T	rs3824662	0	3824662	intron	0	0.17	9E-12	11.04575749056067		   1.31	[1.21-1.41] 	Illumina [382,776] (imputed)	N
03/18/2014	23996088	Migliorini G	08/30/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23996088	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	10q21.2	10	61961417	ARID5B 	ARID5B			84159			rs7090445-?	rs7090445	0	7090445	intron	0	NR	5E-54	53.30102999566397		NR	NR	Illumina [382,776] (imputed)	N
03/18/2014	23996088	Migliorini G	08/30/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23996088	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	9p21.3	9	21984662	CDKN2A/B	CDKN2A			1029			rs3731217-?	rs3731217	0	3731217	intron	0	NR	2E-8	7.698970004336018		NR	NR	Illumina [382,776] (imputed)	N
03/18/2014	23996088	Migliorini G	08/30/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23996088	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	14q11.2	14	23119848	CEBPE 	CEBPE			1053			rs2239633-?	rs2239633	0	2239633	nearGene-5	0	NR	1E-16	16		NR	NR	Illumina [382,776] (imputed)	N
03/18/2014	23996088	Migliorini G	08/30/2013	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23996088	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	7p12.2	7	50402283	IKZF1 	IKZF1			10320			rs11980379-?	rs11980379	0	11980379	UTR-3	0	NR	3E-33	32.52287874528034		NR	NR	Illumina [382,776] (imputed)	N
03/14/2014	23992748	Drake KA	08/29/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23992748	A genome-wide association study of bronchodilator response in Latinos implicates rare variants.	Asthma (bronchodilator response)	up to 1,782 Latino ancestry child cases	529 Latino ancestry child cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [568,037]	N
03/18/2014	23989986	Evangelou E	08/29/2013	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23989986	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	20q13.12	20	47466905	NCOA3	ZMYND8 - RPL35AP	23613	140716		      110.02	       11.31	rs6094710-A	rs6094710	0	6094710	Intergenic	1	0.04	2E-10	9.698970004336017		   1.28	[1.18-1.39] 	Illumina [2,567,279] (imputed)	N
03/18/2014	23989986	Evangelou E	08/29/2013	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23989986	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	7q31.1	7	112519123	IFRD1	LSMEM1 - NPM1P14	286006	10833		       28.06	        1.27	rs5009270-A	rs5009270	0	5009270	Intergenic	1	0.3	3E-6	5.522878745280337		   1.10	[1.06-1.14] 	Illumina [2,567,279] (imputed)	N
03/18/2014	23989986	Evangelou E	08/29/2013	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23989986	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	7p13	7	44237052	CAMK2B	CAMK2B			816			rs3757837-C	rs3757837	0	3757837	intron	0	0.06	8E-10	9.096910013008054	(Male-specifc)	   1.27	[1.15-1.41] 	Illumina [2,567,279] (imputed)	N
03/18/2014	23989986	Evangelou E	08/29/2013	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23989986	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	12q24.31	12	123890663	DNAH10	DNAH10			196385			rs10773046-G	rs10773046	0	10773046	intron	0	0.45	2E-6	5.698970004336018		   1.07	[1.03-1.11] 	Illumina [2,567,279] (imputed)	N
03/18/2014	23989986	Evangelou E	08/29/2013	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23989986	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	17q23.2	17	61590592	NACA2	NACA2			342538			rs17610181-A	rs17610181	0	17610181	STOP-GAIN	0	0.14	8E-6	5.096910013008055		   1.12	[1.06-1.18] 	Illumina [2,567,279] (imputed)	N
03/14/2014	23984888	Himes BE	08/28/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23984888	ITGB5 and AGFG1 variants are associated with severity of airway responsiveness.	Airway hyperresponsiveness	994 European ancestry asthma cases	650 European ancestry asthma cases, 3,354 European ancestry chronic obstructive pulmonary disease cases	2q36.3	2	227532850	ITGB5, AGFG1	AGFG1			3267			rs6731443-G	rs6731443	0	6731443	intron	0	0.36	2E-6	5.698970004336018		    .02	[NR] unit decrease	Affymetrix [2,154,322] (imputed)	N
03/14/2014	23982368	Qi L	08/28/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23982368	Association between a genetic variant related to glutamic acid metabolism and coronary heart disease in individuals with type 2 diabetes.	Cardiovascular heart disease in diabetics	669 European ancestry cases, 1,641 European ancestry controls	848 European ancestry cases, 1,030 European ancestry controls	1q25.3	1	182112825	ZNF648, GLUL	ZNF648 - GS1-122H1.2	127665	400799		       51.11	       91.12	rs10911021-C	rs10911021	0	10911021	Intergenic	1	0.679	2E-8	7.698970004336018		   1.36	[1.22-1.51] 	Affymetrix [2,543,016]	N
03/15/2014	23979607	Lubke GH	08/27/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23979607	Genome-wide analyses of borderline personality features.	Borderline personality disorder features	up to 7,125 individuals	1,301 individuals	5q14.1	5	80151081	SERINC5	SERINC5			256987			rs73772260-?	rs73772260	0	73772260	intron	0	NR	4E-7	6.397940008672037		   1.73	[-0.05589-3.51589] unit decrease	Affymetrix & Illumina [6,670,475]	N
03/14/2014	23983088	Miller FW	08/27/2013	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23983088	Genome-wide association study of dermatomyositis reveals genetic overlap with other autoimmune disorders.	Dermatomyositis	1,178 European ancestry cases, 4,724 European ancestry controls	NR	2q33.1[rs7572733]; 2q33.1[rs6738825]			PLCL1	 - 						rs7572733-?	rs7572733, rs6738825					NR	6E-6			   1.25	[1.14-1.39] 	Illumina [up to 242,876]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	6p21.32	6	32464185	HLA-DRB9	TRNAI25			100189401			rs114002140-A	rs114002140	1	9268895		0	0.763	9E-14	13.04575749056067		   1.67	[1.63-1.71] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	10q24.32	10	102869116	C10orf32, AS3MT, CALHM1, CALHM2, CALHM3,CNNM2, CYP17A1, INA, MIR1307, NT5C2, PCGF6, PDCD11, SFXN2, ST13P13, TAF5, USMG5, WBP1L	AS3MT;C10orf32-ASMT			57412;100528007			rs7085104-A	rs7085104	0	7085104	nearGene-5;intron	0	0.645	4E-13	12.39794000867204		   1.11	[1.08-1.14] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	7p22.3	7	1977810	MAD1L1, FTSJ2, NUDT1, SNX8	MAD1L1			8379			rs6461049-T	rs6461049	0	6461049	intron	0	0.571	6E-13	12.22184874961636		   1.11	[1.08-1.13] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	1p21.3	1	98087276	MIR137, DPYD	NFU1P2 - SNX7	100132699	51375		        9.78	      574.39	rs1198588-T	rs1198588	0	1198588	Intergenic	1	0.786	2E-12	11.69897000433602		   1.12	[1.09-1.16] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	12p13.33	12	2236129	CACNA1C	CACNA1C			775			rs1006737-A	rs1006737	0	1006737	intron	0	0.332	5E-12	11.30102999566398		   1.10	[1.08-1.13] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	10p12.31	10	18445599	CACNB2, NSUN6	CACNB2			783			rs17691888-G	rs17691888	0	17691888	intron	0	0.886	1E-10	10		   1.16	[1.11-1.21] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	8q24.3	8	142231572	TSNARE1	TSNARE1			203062			rs4129585-A	rs4129585	0	4129585	intron	0	0.439	2E-10	9.698970004336017		   1.09	[1.06-1.12] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	1p31.1	1	73359226	Intergenic	KRT8P21 - LRRIQ3	126811	127255		      252.74	      666.79	rs10789369-A	rs10789369	0	10789369	Intergenic	1	0.383	4E-10	9.397940008672037		   1.10	[1.07-1.12] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	11q25	11	130947684	SNX19	SNX19 - NTM	399979	50863		       31.20	      422.79	rs7940866-T	rs7940866	0	7940866	Intergenic	1	0.487	2E-9	8.698970004336019		   1.09	[1.06-1.12] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	5q33.1	5	153274919	GRIA1	TRNAC32P - GRIA1	100189508	2890		      665.71	      215.61	rs17504622-T	rs17504622	0	17504622	Intergenic	1	0.05	3E-9	8.522878745280337		   1.24	[1.17-1.31] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	19p13.11	19	19362636	MAU2, CILP2, GATAD2A, GMIP, HAPLN4, LPAR2, MIR640, NCAN, NDUFA13, PBX4, SUGP1, TM6SF2, TSSK6, YJEFN3	MAU2 - GATAD2A	23383	54815		        3.88	       23.20	rs2905424-T	rs2905424	0	2905424	Intergenic	1	0.348	3E-9	8.522878745280337		   1.09	[1.06-1.12] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	2p22.2	2	37365485	QPCT, C2orf56, CEBPZ, PRKD3, SULT6B1	QPCT			25797			rs2373000-T	rs2373000	0	2373000	intron	0	0.402	7E-9	8.154901959985743		   1.09	[1.06-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	5q21.1	5	102434022	SLCO6A1	SLCO6A1			133482			rs6878284-C	rs6878284	0	6878284	intron	0	0.363	9E-9	8.045757490560675		   1.09	[1.06-1.12] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	3p21.1	3	52804386	ITIH3, ALAS1, ALDOAP1, BAP1, C3orf78, DNAH1, GLT8D1, GLYCTK, GNL3, ITIH1, ITIH4, MIR135A1, MIRLET7G, MUSTN1, NEK4, NISCH, NT5DC2, PBRM1, PHF7, PPM1M, RFT1, SEMA3G, SFMBT1, SPCS1, STAB1, TLR9, TMEM110, TNNC1, TWF2, WDR82	ITIH3			3699			rs4687552-T	rs4687552	0	4687552	intron	0	0.641	1E-8	8		   1.09	[1.06-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	2q22.3	2	144383974	ZEB2	ZEB2			9839			rs12991836-C	rs12991836	0	12991836	nearGene-3	0	0.348	1E-8	8		   1.08	[1.05-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	2q33.1	2	199850665	FONG, C2orf47, C2orf69, SPATS2L, TYW5	FTCDNL1			348751			rs2949006-T	rs2949006	0	2949006	intron	0	0.192	1E-8	8		   1.10	[1.07-1.14] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	18q21.2	18	55085469	TCF4	MAP1LC3P - RNA5SP459	387615	100873703		      130.43	       61.08	rs4801131-C	rs4801131	0	4801131	Intergenic	1	0.582	1E-8	8		   1.08	[1.05-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	2q37.1	2	232878399	C2orf82, GIGYF2, KCNJ13, NGEF	NGEF			25791			rs778371-G	rs778371	0	778371	nearGene-3	0	0.281	2E-8	7.698970004336018		   1.09	[1.06-1.12] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	1q43	1	243500591	AKT3, CEP170	AKT3;SDCCAG8			10000;10806			rs14403-C	rs14403	0	14403	intron;nearGene-3	0	0.773	2E-8	7.698970004336018		   1.10	[1.07-1.13] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	12q24.31	12	123246876	C12orf65, ABCB9, ARL6IP4, CDK2AP1, MIR4304, MPHOSPH9, OGFOD2, PITPNM2, RILPL2, SBNO1, SETD8	C12orf65			91574			rs11532322-A	rs11532322	0	11532322	intron	0	0.318	2E-8	7.698970004336018		   1.09	[1.06-1.13] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	8q21.3	8	88579854	MMP16	RNA5SP272 - RIPK2	100873525	8767		      183.31	     1177.88	rs11995572-T	rs11995572	0	11995572	Intergenic	1	0.135	3E-8	7.522878745280337		   1.12	[1.08-1.16] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	5q12.1	5	61203304	ZSWIM6, C5orf43	CTC-436P18.1			101928630			rs171748-A	rs171748	0	171748	intron	0	0.471	4E-8	7.397940008672037		   1.08	[1.05-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	2q32.1	2	184947213	Intergenic	RPL23AP33 - ELF2P4	100271293	644935		       44.65	      598.51	rs4380187-A	rs4380187	0	4380187	Intergenic	1	0.529	6E-8	7.221848749616355		   1.08	[1.05-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	17p13.3	17	2305605	Intergenic	SMG6;SRR			23293;63826			rs4523957-T	rs4523957	0	4523957	nearGene-5;intron	0	0.616	6E-8	7.221848749616355		   1.08	[1.05-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	3p22.2	3	36822998	Intergenic	HSPD1P6 - TRANK1	645548	9881		       54.11	        3.82	rs6550435-G	rs6550435	0	6550435	Intergenic	1	0.344	6E-8	7.221848749616355		   1.08	[1.05-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	1q43	1	243381525	SDCCAG8	SDCCAG8			10806			rs1538774-G	rs1538774	0	1538774	intron	0	0.74	3E-8	7.522878745280337		   1.09	[1.06-1.12] 	Affymetrix & Illumina [9,871,789]	N
03/18/2014	23974872	Ripke S	08/25/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23974872	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 cases, 15,021 controls, 581 trios	5q33.1	5	153160794	Intergenic	TRNAC32P - GRIA1	100189508	2890		      551.58	      329.73	rs2910032-C	rs2910032	0	2910032	Intergenic	1	0.469	4E-8	7.397940008672037		   1.08	[1.05-1.11] 	Affymetrix & Illumina [9,871,789]	N
03/19/2014	23974705	Allen EK	08/23/2013	J Assoc Res Otolaryngol	http://www.ncbi.nlm.nih.gov/pubmed/23974705	A genome-wide association study of chronic otitis media with effusion and recurrent otitis media identifies a novel susceptibility locus on chromosome 2.	Otitis media (chronic/recurrent)	373 cases and 229 controls from 143 families	932 European ancestry cases and 652 European ancestry controls from 441 families	2q31.1	2	173432931	CDCA7, SP3	CDCA7 - RPL5P7	83879	344178		       63.94	      438.64	rs10497394-G	rs10497394	0	10497394	Intergenic	1	0.637	2E-8	7.698970004336018		   1.51	[1.30-1.70] 	Illumina [324,748]	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	14q24.1	14	68847342	ACTN1	ZFP36L1 - MAGOH3P	677	90352		       51.10	       14.38	rs434943-A	rs434943	0	434943	Intergenic	1	0.31	1E-8	8	(EA)	    .01	[0.005-0.009] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	5q31.1	5	132420366	C5orf56, IRF1	C5orf56			441108			rs11242111-A	rs11242111	0	11242111	intron	0	0.05	2E-21	20.69897000433602	(EA)	    .02	[0.019-0.027] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	17q25.1	17	74703694	CD300LF	CD300LF;RAB37			146722;326624			rs10512597-T	rs10512597	0	10512597	intron;intron	0	0.18	1E-8	8	(EA)	    .01	[0.006-0.01] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	16q12.2	16	53158419	CHD9	CHD9			80205			rs7204230-T	rs7204230	0	7204230	intron	0	0.7	1E-10	10	(EA)	    .01	[0.006-0.01] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q34	2	210678331	CPS1	CPS1			1373			rs715-T	rs715	0	715	UTR-3	0	0.68	2E-11	10.69897000433602	(EA)	    .01	[0.007-0.011] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	12q13.12	12	50740958	DIP2B	DIP2B			57609			rs7968440-A	rs7968440	0	7968440	intron	0	0.64	3E-8	7.522878745280337	(EA)	    .01	[0.004-0.008] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q37.3	2	241357034	FARP2	FARP2			9855			rs1476698-A	rs1476698	0	1476698	intron	0	0.65	2E-9	8.698970004336019	(EA)	    .01	[0.005-0.009] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	4q31.3[rs1800789]; 4q31.3[rs4463047]			FGB	 - 						rs1800789-A	rs1800789, rs4463047, rs4508864					0.21	2E-127			    .03	[0.029-0.033] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	4p16.3	4	3447925	HGFAC, LRPAP1	HGFAC			3083			rs16844401-A	rs16844401	0	16844401	missense	0	0.08	2E-8	7.698970004336018	(EA)	    .02	[0.0091-0.0209] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q13	2	113083453	IL1F10, IL1RN	IL1F10 - IL1RN	84639	3557		        7.60	       34.44	rs6734238-A	rs6734238	0	6734238	Intergenic	1	0.58	6E-19	18.22184874961635	(EA)	    .01	[0.007-0.011] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q12.1	2	102110201	IL1R1, IL1R2	IL1R1			3554			rs12712127-A	rs12712127	0	12712127	intron	0	0.41	3E-8	7.522878745280337	(EA)	    .01	[0.004-0.008] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	1q21.3	1	154453788	IL6R	IL6R			3570			rs4129267-T	rs4129267	0	4129267	intron	0	0.39	6E-27	26.22184874961635	(EA)	    .01	[0.009-0.013] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	10q21.3	10	63402393	JMJD1C	JMJD1C			221037			rs7896783-A	rs7896783	0	7896783	intron	0	0.48	9E-22	21.04575749056067	(EA)	    .01	[0.008-0.012] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	1p31.3	1	65652146	LEPR	LEPR - PDE4B	3953	5142		       14.65	      140.36	rs1938492-A	rs1938492	0	1938492	Intergenic	1	0.62	5E-14	13.30102999566398	(EA)	    .01	[0.006-0.01] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	11q12.2	11	60173126	MS4A6A	MS4A6A			64231			rs1019670-A	rs1019670	1	7232	missense	0	0.36	4E-9	8.397940008672036	(EA)	    .01	[0.005-0.009] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	3q22.3	3	136206349	MSL2,PCCB	RPL31P23 - PCCB	391581	5096		         .42	       43.98	rs1154988-A	rs1154988	0	1154988	Intergenic	1	0.78	1E-16	16	(EA)	    .01	[0.008-0.012] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	1q44	1	247442297	NLRP3	NLRP3			114548			rs10157379-T	rs10157379	0	10157379	intron	0	0.62	1E-19	19	(EA)	    .01	[0.008-0.012] unit increase	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	8q24.3	8	143946999	PLEC1	PLEC;MIR661			5339;724031			rs7464572-C	rs7464572	0	7464572	intron;nearGene-5	0	0.6	1E-9	8.999999999999998	(EA)	    .01	[0.005-0.009] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	21q22.2	21	39093586	PSMG1	RPSAP64 - RPL23AP12	100873797	391282		      198.39	       33.97	rs4817986-T	rs4817986	0	4817986	Intergenic	1	0.28	2E-11	10.69897000433602	(EA)	    .01	[0.006-0.01] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	22q13.33	22	50663510	SHANK3, ARSA, CPT1B	ARSA - SHANK3	410	85358		       35.34	       11.13	rs6010044-A	rs6010044	0	6010044	Intergenic	1	0.8	3E-8	7.522878745280337	(EA)	    .01	[0.006-0.01] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	7p21.1	7	17957989	SNx13, PRPS1L1	SNX13 - RNMTL1P2	23161	100420223		       17.47	        4.09	rs10226084-T	rs10226084	0	10226084	Intergenic	1	0.52	5E-10	9.301029995663981	(EA)	    .01	[0.005-0.009] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	15q21.2	15	50756405	SPPL2A	SPPL2A			84888			rs12915708-C	rs12915708	0	12915708	intron	0	0.3	7E-10	9.154901959985741	(EA)	    .01	[0.005-0.009] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	7p15.3	7	22816987	TOMM7, IL6	TOMM7			54543			rs2286503-T	rs2286503	0	2286503	intron	0	0.36	7E-9	8.154901959985743	(EA)	    .01	[0.004-0.008] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/14/2014	23969696	Sabater-Lleal M	08/22/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23969696	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	5q31.1	5	132433482	C5orf56, IRF1	C5orf56			441108			rs2106854-T	rs2106854	0	2106854	intron	0	0.21	2E-48	47.69897000433601	(EA)	    .02	[0.017-0.021] unit decrease	Affymetrix & Illumina [2,515,567] (Imputed)	N
03/04/2014	23990791	Thun GA	08/22/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23990791	Causal and synthetic associations of variants in the SERPINA gene cluster with alpha1-antitrypsin serum levels.	Serum alpha1-antitrypsin levels	1,392 European ancestry individuals	12,518 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,168,668] Imputed	N
03/21/2014	23989729	Feenstra B	08/21/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23989729	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 other ancestry cases, 697 other ancestry controls	11q23.3	11	116835331	APOA1	APOA1			335			rs12721025-A	rs12721025	0	12721025	nearGene-3	0	0.0569	2E-10	9.698970004336017		   1.59	[1.38-1.83] 	Illumina [9,737,928] (Imputed)	N
03/21/2014	23989729	Feenstra B	08/21/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23989729	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 other ancestry cases, 697 other ancestry controls	3q25.1	3	152112520	Intergenic	SUCNR1 - MBNL1	56670	4154		      230.43	      131.80	rs11712066-A	rs11712066	0	11712066	Intergenic	1	0.7484	3E-21	20.52287874528034		   1.55	[1.42-1.70] 	Illumina [9,737,928] (Imputed)	N
03/21/2014	23989729	Feenstra B	08/21/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23989729	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 other ancestry cases, 697 other ancestry controls	3q25.2	3	153754374	Intergenic	C3orf79 - RPL21P42	152118	100271162		      251.68	      269.42	rs573872-G	rs573872	0	573872	Intergenic	1	0.2282	5E-14	13.30102999566398		   1.37	[1.26-1.48] 	Illumina [9,737,928] (Imputed)	N
03/21/2014	23989729	Feenstra B	08/21/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23989729	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 other ancestry cases, 697 other ancestry controls	5q35.1	5	173168305	Intergenic	BNIP1 - RPL7AP33	662	391850		        3.92	       57.53	rs29784-T	rs29784	0	29784	Intergenic	1	0.4504	8E-18	17.09691001300806		   1.36	[1.27-1.46] 	Illumina [9,737,928] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q22.33	6	126794309	RSPO3	RPS4XP9 - RSPO3	442257	84870		      110.40	      324.39	rs13209747-T	rs13209747	0	13209747	Intergenic	1	0.19	3E-10	9.522878745280336	(SBP)	    .85	[0.44-1.26] unit increase	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q22.33	6	126794309	RSPO3	RPS4XP9 - RSPO3	442257	84870		      110.40	      324.39	rs13209747-T	rs13209747	0	13209747	Intergenic	1	0.19	2E-11	10.69897000433602	(DBP)	    .56	[0.32-0.80] unit increase	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q25.1	6	150683634	PLEKHG1	PLEKHG1			57480			rs17080102-C	rs17080102	0	17080102	intron	0	0.1	5E-8	7.30102999566398	(SBP)	   1.02	[0.53-1.51] unit decrease	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q25.1	6	150683634	PLEKHG1	PLEKHG1			57480			rs17080102-C	rs17080102	0	17080102	intron	0	0.1	2E-11	10.69897000433602	(DBP)	    .74	[0.45-1.03] unit decrease	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	6q14.1	6	81510835	C6orf37, FAM46A	RPL17P25 - FAM46A	442232	55603		     1136.23	      234.90	rs6924906-T	rs6924906	0	6924906	Intergenic	1	0.71	6E-7	6.221848749616355	(DBP)	    .51	[0.31-0.71] unit decrease	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	7p15.2	7	27298248	EVX1, HOXA	RPL35P4 - EIF4HP1	100271006	401316		       28.50	      158.12	rs17428471-T	rs17428471	0	17428471	Intergenic	1	0.14	2E-12	11.69897000433602	(SBP)	   1.20	[0.73-1.67] unit increase	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	7p15.2	7	27298248	EVX1, HOXA	RPL35P4 - EIF4HP1	100271006	401316		       28.50	      158.12	rs17428471-T	rs17428471	0	17428471	Intergenic	1	0.14	2E-9	8.698970004336019	(DBP)	    .61	[0.34-0.88] unit increase	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	3p22.1	3	41946428	ULK4	ULK4			54986			rs1717027-T	rs1717027	0	1717027	intron	0	0.64	5E-13	12.30102999566398	(DBP)	    .49	[0.29-0.69] unit increase	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	11p15.1	11	16228637	SOX6	SOX6			55553			rs1401454-T	rs1401454	0	1401454	intron	0	0.46	1E-6	5.999999999999999	(SBP)	    .55	[0.24-0.86] unit increase	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	11p15.1	11	16228637	SOX6	SOX6			55553			rs1401454-T	rs1401454	0	1401454	intron	0	0.46	5E-10	9.301029995663981	(DBP)	    .45	[0.25-0.65] unit increase	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/15/2014	23972371	Franceschini N	08/20/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23972371	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	11p15.4	11	7680272	CYB5R2	CYB5R2 - OVCH2	51700	341277		        3.09	        9.17	rs11041530-C	rs11041530	0	11041530	Intergenic	1	0.11	6E-6	5.221848749616356	(SBP)	   1.35	[0.86-1.84] unit decrease	Affymetrix & Illumina [~2.42 million] (Imputed)	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	2q14.2	2	119266116	STEAP3	STEAP3			55240			rs72840936-?	rs72840936	0	72840936	nearGene-3	0	NR	3E-6	5.522878745280337	(EA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	3q11.2	3	96134788	Intergenic	MTHFD2P1 - HNRNPKP4	100287639	644063		      451.60	      214.77	rs111325002-?	rs111325002	0	111325002	Intergenic	1	NR	4E-7	6.397940008672037	(AA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	4	173626006	Intergenic	MORF4 - RANP6	10934	100128266		        9.36	        7.73	rs4129566-?	rs4129566	0	4129566	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	4	173633681	RANP6	MORF4 - RANP6	10934	100128266		       17.04	         .05	rs11944332-?	rs11944332	0	11944332	Intergenic	1	NR	2E-6	5.698970004336018	(AA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	8q22.3	8	103561561	RIMS2	RIMS2			9699			rs75686122-?	rs75686122	0	75686122	intron	0	NR	3E-6	5.522878745280337	(AA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	17p13.3	17	3284718	OR3A2, OR3A1	OR3A2 - OR3A1	4995	4994		        5.74	        6.92	rs2005290-?	rs2005290	0	2005290	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q26.13	10	124737579	FAM53B	FAM53B			9679			rs2629540-?	rs2629540	0	2629540	intron	0	NR	4E-8	7.397940008672037	(Symptom count)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	12q24.31	12	124517777	NCOR2	NCOR2			9612			rs150954431-?	rs150954431	0	150954431	intron	0	NR	5E-7	6.30102999566398	(Symptom count, EA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q21.2	10	60792132	CDK1	CDK1			983			rs2456778-?	rs2456778	0	2456778	intron	0	NR	5E-6	5.301029995663981	(Cocaine–induced paranoia, AA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	1q31.3	1	195821528	Intergenic	EEF1A1P14 - KCNT2	647167	343450		     1630.99	      404.25	rs6677435-?	rs6677435	0	6677435	Intergenic	1	NR	9E-6	5.045757490560675	(EA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	4	173626006	Intergenic	MORF4 - RANP6	10934	100128266		        9.36	        7.73	rs4129566-?	rs4129566	0	4129566	Intergenic	1	NR	3E-6	5.522878745280337	(AA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	4q34.1	4	173633681	RANP6	MORF4 - RANP6	10934	100128266		       17.04	         .05	rs11944332-?	rs11944332	0	11944332	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	17p13.3	17	3284718	OR3A2, OR3A1	OR3A2 - OR3A1	4995	4994		        5.74	        6.92	rs2005290-?	rs2005290	0	2005290	Intergenic	1	NR	2E-6	5.698970004336018	(EA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q26.13	10	124737579	FAM53B	FAM53B			9679			rs2629540-?	rs2629540	0	2629540	intron	0	NR	1E-6	5.999999999999999	(Symptom count, AA)	NR	NR	Illumina [37,426,733] imputed	N
03/20/2014	23958962	Gelernter J	08/20/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q21.2	10	60792132	CDK1	CDK1			983			rs2456778-?	rs2456778	0	2456778	intron	0	NR	3E-6	5.522878745280337	(Cocaine–induced paranoia)	NR	NR	Illumina [37,426,733] imputed	N
03/13/2014	23966204	Ledda M	08/20/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966204	GWAS of human bitter taste perception identifies new loci and reveals additional complexity of bitter taste genetics.	Bitter taste perception	503 Brazillian ancestry individuals	104 Brazillian ancestry individuals	12p13.2[rs2708377]; 12p13.2[rs8181]			Tas2R46	 - 						rs2708377-?	rs2708377, rs8181					0.312	3E-8		(Caffeine)	    .11	[0.071-0.149] unit decrease	Illumina [~1 million]	N
03/13/2014	23966204	Ledda M	08/20/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966204	GWAS of human bitter taste perception identifies new loci and reveals additional complexity of bitter taste genetics.	Bitter taste perception	503 Brazillian ancestry individuals	104 Brazillian ancestry individuals	7q34	7	141972804	Tas2R38	TAS2R38;MGAM			5726;8972			rs10246939-?	rs10246939	0	10246939	missense;intron	0	NR	2E-62	61.69897000433601	(PROP)	    .39	[0.34-0.44] unit decrease	Illumina [~1 million]	N
03/13/2014	23966204	Ledda M	08/20/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966204	GWAS of human bitter taste perception identifies new loci and reveals additional complexity of bitter taste genetics.	Bitter taste perception	503 Brazillian ancestry individuals	104 Brazillian ancestry individuals	12p13.2	12	11126493	Tas2R31, Tas2R43	PRH1-PRR4			100533464			rs1031391-?	rs1031391	0	1031391	intron	0	NR	2E-19	18.69897000433602	(Quinine)	    .23	[0.18-0.28] unit increase	Illumina [~1 million]	N
03/20/2014	23962720	Speed D	08/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23962720	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 Epilepsy cases	NA	1q21.1	1	145789475	NR	RNF115			27246			rs12744221-C	rs12744221	0	12744221	intron	0	0.65	6E-6	5.221848749616356		   1.66	[NR] 	Illumina [6,923,995] (Imputed)	N
03/20/2014	23962720	Speed D	08/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23962720	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 Epilepsy cases	NA	4q34.1	4	175087067	NR	ADAM29 - TSEN2P1	11086	391718		      108.89	      407.50	rs72698613-A	rs72698613	0	72698613	Intergenic	1	0.92	4E-6	5.397940008672037		   2.39	[NR] 	Illumina [6,923,995] (Imputed)	N
03/20/2014	23962720	Speed D	08/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23962720	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 Epilepsy cases	NA	5p15.33	5	3276582	NR	C5orf38 - LINC01019	153571	285577		      521.19	      140.57	rs61670327-A	rs61670327	0	61670327	Intergenic	1	0.52	7E-7	6.154901959985743		   1.72	[NR] 	Illumina [6,923,995] (Imputed)	N
03/20/2014	23962720	Speed D	08/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23962720	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 Epilepsy cases	NA	6p12.2	6	52971097	GSTA4	TRNAI25			100189401			rs492146-A	rs492146	0	492146		0	0.52	2E-7	6.698970004336019		   1.75	[NR] 	Illumina [6,923,995] (Imputed)	N
03/20/2014	23962720	Speed D	08/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23962720	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 Epilepsy cases	NA	9p23	9	10505224	PTPRD	PTPRD			5789			rs72700966-C	rs72700966	0	72700966	intron	0	0.92	3E-7	6.522878745280337		   2.70	[NR] 	Illumina [6,923,995] (Imputed)	N
03/20/2014	23962720	Speed D	08/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23962720	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 Epilepsy cases	NA	15q13.2	15	30606129	ARHGAP11B	GOLGA8H;LOC101927579			728498;101927579			rs143536437-C	rs143536437	0	143536437	intron;intron	0	0.72	3E-6	5.522878745280337		   1.73	[NR] 	Illumina [6,923,995] (Imputed)	N
03/20/2014	23962720	Speed D	08/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23962720	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 Epilepsy cases	NA	16p13.2	16	8467743	NR	RPS26P51 - TMEM114	100271576	283953		     1341.10	      101.76	rs11861787-C	rs11861787	0	11861787	Intergenic	1	0.25	3E-6	5.522878745280337		   1.89	[NR] 	Illumina [6,923,995] (Imputed)	N
03/13/2014	23955597	Chubb D	08/18/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23955597	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	2q37.1	2	231311828	NR	ARMC9			80210			rs7580717-G	rs7580717	0	7580717	intron	0	NR	5E-6	5.301029995663981		   1.13	[NR] 	Illumina [414,804]	N
03/13/2014	23955597	Chubb D	08/18/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23955597	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	3q26.2	3	169774313	MYNN, TERC	MYNN			55892			rs10936599-G	rs10936599	0	10936599	cds-synon	0	0.8	9E-14	13.04575749056067		   1.26	[1.18-1.33] 	Illumina [414,804]	N
03/13/2014	23955597	Chubb D	08/18/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23955597	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	6p21.33	6	31139481	PSORS1C1, CCHCR1, CDSN, TCF19, POU5F1	PSORS1C1;PSORS1C2			170679;170680			rs2285803-A	rs2285803	0	2285803	intron;nearGene-5	0	0.32	1E-10	10		   1.19	[1.13-1.26] 	Illumina [414,804]	N
03/13/2014	23955597	Chubb D	08/18/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23955597	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	10q25.2	10	110277217	NR	MXI1			4601			rs11195062-A	rs11195062	0	11195062	intron	0	NR	3E-6	5.522878745280337		   1.13	[NR] 	Illumina [414,804]	N
03/13/2014	23955597	Chubb D	08/18/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23955597	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	17p11.2	17	16945825	TNFRSF13B	TNFRSF13B			23495			rs4273077-G	rs4273077	0	4273077	intron	0	0.12	8E-9	8.096910013008056		   1.26	[1.16-1.36] 	Illumina [414,804]	N
03/13/2014	23955597	Chubb D	08/18/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23955597	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	22q13.1	22	39146287	CBX7	CBX7			23492			rs877529-A	rs877529	0	877529	intron	0	0.51	8E-16	15.09691001300805		   1.23	[1.17-1.29] 	Illumina [414,804]	N
03/11/2014	23956247	Knevel R	08/16/2013	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23956247	Identification of a genetic variant for joint damage progression in autoantibody-positive rheumatoid arthritis.	Joint damage progression in ACPA-positive rheumatoid arthritis 	384 cases	301 European ancestry cases, 742 cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [391,733]	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	9q33.3	9	124021568	LHX2, DENND1A	LHX2			9355			rs2075064-T	rs2075064	0	2075064	intron	0	0.13	2E-8	7.698970004336018	(BMI_pooled)	    .07	[0.05-0.09] unit decrease	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	5q11.2	5	56558326	MAP3K1	LOC101928448			101928448			rs6867983-T	rs6867983	0	6867983	intron	0	0.24	1E-7	7	(men)	    .09	[0.051-0.129] unit decrease	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	2p23.2	2	28124815	BRE	BRE			9577			rs7601155-T	rs7601155	0	7601155	intron	0	0.13	2E-7	6.698970004336019	(pooled)	    .06	[0.04-0.08] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	5q15	5	96520975	PCSK1	PCSK1 - CAST	5122	831		       87.69	      141.06	rs2570467-A	rs2570467	0	2570467	Intergenic	1	0.86	1E-6	5.999999999999999	(men)	    .10	[0.061-0.139] unit decrease	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	7q31.2	7	117383481	ASZ1	ASZ1			136991			rs4730779-A	rs4730779	0	4730779	intron	0	0.86	4E-6	5.397940008672037	(BMI_men)	    .10	[0.061-0.139] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	2q12.1	2	102259127	IL1RL2, IL1RL1	IL1RL2 - IL1RL1	8808	9173		       19.13	       52.38	rs1345301-A	rs1345301	0	1345301	Intergenic	1	0.75	5E-6	5.301029995663981	(men)	    .08	[0.041-0.119] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	2q33.1	2	198720832	SATB2	PLCL1 - SATB2	5334	23314		      570.95	      548.67	rs16830366-T	rs16830366	0	16830366	Intergenic	1	0.07	6E-6	5.221848749616356	(women)	    .09	[0.031-0.109] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	6p24.3	6	7217284	RREB1	RREB1			6239			rs6931262-T	rs6931262	0	6931262	intron	0	0.25	3E-8	7.522878745280337	(BMI_pooled)	    .06	[0.04-0.08] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	11q25	11	132771851	OPCML	OPCML			4978			rs10894604-T	rs10894604	0	10894604	intron	0	0.83	4E-7	6.397940008672037	(BMI_pooled)	    .06	[0.04-0.08] unit decrease	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	16p13.11	16	15788110	MYH11	MYH11			4629			rs17213965-T	rs17213965	0	17213965	intron	0	0.14	9E-7	6.045757490560675	(BMI_men)	    .12	[0.081-0.159] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	8p23.2	8	5569009	CSMD1	RPL23AP54 - MCPH1	100271466	79648		       92.04	      837.58	rs11777345-C	rs11777345	0	11777345	Intergenic	1	0.9	3E-6	5.522878745280337	(BMI_men)	    .19	[0.11-0.27] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	2p14	2	67374839	ETAA1	DNMT3AP1 - ETAA1	130802	54465		      552.21	       22.47	rs6739392-A	rs6739392	0	6739392	Intergenic	1	0.23	4E-6	5.397940008672037	(BMI_women)	    .06	[0.04-0.08] unit increase	Affymetrix & Illumina [3.2 million] Imputed	N
03/04/2014	23966867	Liu CT	08/15/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23966867	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	6p25.1	6	6738519	LY86	LY86 - BTF3P7	9450	652960		       83.54	       56.14	rs1294410-T	rs1294410	0	1294410	Intergenic	1	0.23	1E-6	5.999999999999999	(BMI_pooled)	    .05	[0.030-0.070] unit decrease	Affymetrix & Illumina [3.2 million] Imputed	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	7q32.1	7	128222749	MIR129, LEP	LOC101928423			101928423			rs791595-A	rs791595	0	791595	intron	0	0.08	3E-13	12.52287874528034		   1.17	[1.12-1.22] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	9q34.3	9	136357696	GPSM1	GPSM1			26086			rs11787792-A	rs11787792	0	11787792	intron	0	0.874	2E-10	9.698970004336017		   1.15	[1.10-1.20] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	17p13.1	17	7037074	SLC16A13	SLC16A13			201232			rs312457-G	rs312457	0	312457	intron	0	0.078	8E-13	12.09691001300806		   1.20	[1.14-1.26] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	0.34	5E-14	13.30102999566398		   1.19	[1.14-1.24] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	3p24.3	3	23156993	UBE2E2	RPL24P7 - UBE2E2-AS1	100270963	100505877		       22.13	       38.08	rs6780569-G	rs6780569	0	6780569	Intergenic	1	0.83	4E-7	6.397940008672037		   1.17	[1.10-1.24] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	4p16.3	4	1316113	MAEA	MAEA			10296			rs6815464-G	rs6815464	0	6815464	intron	0	0.64	2E-7	6.698970004336019		   1.12	[1.08-1.18] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	6p22.3	6	20661019	CDKAL1	CDKAL1			54901			rs7754840-C	rs7754840	0	7754840	intron	0	0.42	2E-13	12.69897000433602		   1.18	[1.13-1.23] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.58	5E-7	6.30102999566398		   1.12	[1.07-1.17] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	9p21.3	9	22134095	CDKN2A, CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      121.56	      312.75	rs10811661-T	rs10811661	0	10811661	Intergenic	1	0.55	1E-18	18		   1.23	[1.18-1.29] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.04	2E-15	14.69897000433602		   1.48	[1.34-1.63] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	10q23.33	10	92703125	HHEX	HHEX - EXOC6	3087	54536		        7.47	      123.71	rs1111875-C	rs1111875	0	1111875	Intergenic	1	0.29	2E-8	7.698970004336018		   1.14	[1.09-1.20] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	11p15.4	11	2818521	KCNQ1	KCNQ1			3784			rs2237892-C	rs2237892	0	2237892	intron	0	0.61	4E-29	28.39794000867204		   1.30	[1.24-1.36] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	15q22.2	15	62104190	C2CD4A, C2CD4B	NPM1P47 - C2CD4B	100129972	388125		       20.88	       59.35	rs7172432-A	rs7172432	0	7172432	Intergenic	1	0.57	1E-6	5.999999999999999		   1.11	[1.07-1.16] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	15q26.1	15	89831025	AP3S2	AP3S2;C15orf38-AP3S2			10239;100526783			rs2028299-C	rs2028299	0	2028299	ncRNA;UTR-3	0	0.23	3E-6	5.522878745280337		   1.13	[1.07-1.19] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	17q12	17	37738049	HNF1B	HNF1B			6928			rs4430796-G	rs4430796	0	4430796	intron	0	0.37	4E-6	5.397940008672037		   1.11	[1.06-1.16] 	Illumina [6,209,637] (Imputed)	N
03/11/2014	23945395	Hara K	08/14/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23945395	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	18,207 Japanese ancestry cases, 6,780 Japanese ancestry controls, 6,209 Chinese ancestry cases, 7,205 Chinese ancestry controls	Xq28	23	153634467	DUSP9	KRT18P48 - DUSP9	340598	1852		       29.32	        7.98	rs5945326-A	rs5945326	0	5945326	Intergenic	1	0.68	2E-12	11.69897000433602		   1.14	[1.10-1.18] 	Illumina [6,209,637] (Imputed)	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Alcohol consumption	7,188 European ancestry individuals	NR	2p12	2	79405221	NR	REG3A - CTNNA2	5068	1496		      245.47	      107.71	rs2100290-G	rs2100290	0	2100290	Intergenic	1	0.49	2E-6	5.698970004336018		   3.44	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Alcohol consumption	7,188 European ancestry individuals	NR	2q37.1	2	233944048	NR	TRPM8			79054			rs12472151-A	rs12472151	0	12472151	intron	0	0.048	2E-6	5.698970004336018		   8.00	[NR] unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NR	1p36.11	1	24866664	NR	CLIC4 - RUNX3	25932	864		       22.34	       32.85	rs3131513-G	rs3131513	0	3131513	Intergenic	1	0.401	2E-6	5.698970004336018		    .35	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NR	4q32.2	4	162321901	Intergenic	FSTL5 - MTHFD2P4	56884	100131135		      157.87	        1.21	rs4440177-A	rs4440177	0	4440177	Intergenic	1	0.338	6E-6	5.221848749616356		    .35	[NR]  unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NR	8p23.1	8	11786406	NEIL2	NEIL2			252969			rs804292-G	rs804292	0	804292	UTR-3	0	0.234	2E-6	5.698970004336018		    .41	[NR]  unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NR	11q25	11	132714224	OPCML	OPCML			4978			rs1793257-A	rs1793257	0	1793257	intron	0	0.037	7E-6	5.154901959985742		    .83	[NR]  unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	5q33.2	5	154431930	GALNT10	SAP30L-AS1			386627			rs10037670-G	rs10037670	0	10037670	intron	0	0.208	4E-6	5.397940008672037	(Illicit drug use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	17q25.3	17	78223510	NR	BIRC5			332			rs2071214-G	rs2071214	0	2071214	missense	0	0.054	8E-6	5.096910013008055	(Non-substance related behavioral disinhibition)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	6q16.1	6	95519536	Intergenic	CYCSP17 - MANEA-AS1	360172	101927288		       15.04	       40.56	rs2380220-A	rs2380220	0	2380220	Intergenic	1	0.159	4E-6	5.397940008672037	(Alcohol dependence)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	8q21.12	8	77413649	NR	HIGD1AP18 - PKIA	100874456	5569		      399.60	     1102.45	rs13259667-A	rs13259667	0	13259667	Intergenic	1	0.074	8E-6	5.096910013008055	(Alcohol dependence)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	12p12.3	12	15236703	NR	RERG-AS1 - METTL8P1	100873980	728996		       81.42	       18.04	rs12311304-G	rs12311304	0	12311304	Intergenic	1	0.328	4E-6	5.397940008672037	(Alcohol dependence)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	12q21.31	12	84793732	SLC6A15	RPL6P25 - SLC6A15	401725	55117		     1641.50	       65.76	rs4761097-G	rs4761097	0	4761097	Intergenic	1	0.449	2E-6	5.698970004336018	(Alcohol dependence)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	13q13.1	13	33106717	NR	STARD13			90627			rs642899-C	rs642899	0	642899	intron	0	0.233	8E-6	5.096910013008055	(Alcohol dependence)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	1q43	1	241728933	NR	WDR64			128025			rs9782914-G	rs9782914	0	9782914	intron	0	0.145	8E-6	5.096910013008055	(Illicit drug use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	3p24.1	3	28165386	NR	EOMES - CMC1	8320	152100		      442.67	       75.96	rs9310862-G	rs9310862	0	9310862	Intergenic	1	0.496	4E-6	5.397940008672037	(Illicit drug use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	12p13.33	12	1825415	NR	CACNA2D4;LRTM2			93589;654429			rs2887631-G	rs2887631	0	2887631	intron;intron	0	0.275	4E-6	5.397940008672037	(Illicit drug use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	12q24.33	12	129745862	NR	TMEM132D			121256			rs7979367-C	rs7979367	0	7979367	intron	0	0.402	6E-6	5.221848749616356	(Illicit drug use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	22q12.3	22	34545584	NR	LARGE-AS1 - ISX	100506195	91464		      794.77	      520.55	rs4821261-A	rs4821261	0	4821261	Intergenic	1	0.132	9E-6	5.045757490560675	(Illicit drug use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	22q13.33	22	50118978	NR	MOV10L1			54456			rs138229-G	rs138229	0	138229	intron	0	0.467	9E-6	5.045757490560675	(Illicit drug use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	12q22	12	94135049	NR	CRADD - PLXNC1	8738	10154		      239.30	       13.67	rs3847794-G	rs3847794	0	3847794	Intergenic	1	0.357	7E-6	5.154901959985742	(Nicotine use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	14q32.31	14	102129288	NR	HSP90AA1			3320			rs1190596-A	rs1190596	0	1190596	intron	0	0.18	4E-6	5.397940008672037	(Nicotine use)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	2p16.3	2	49957256	NR	NRXN1			9378			rs11681792-A	rs11681792	0	11681792	intron	0	0.179	4E-7	6.397940008672037	(Non-substance related behavioral disinhibition)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	4q31.21	4	145847922	NR	ZNF827			152485			rs1027841-A	rs1027841	0	1027841	intron	0	0.162	2E-6	5.698970004336018	(Non-substance related behavioral disinhibition)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	16p13.2	16	9120023	NR	C16orf72			29035			rs3743832-A	rs3743832	0	3743832	intron	0	0.39	9E-7	6.045757490560675	(Non-substance related behavioral disinhibition)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	7p11.2	7	55656752	NR	TUBBP6 - FKBP9P1	442308	360132		        9.80	       24.32	rs9656709-C	rs9656709	0	9656709	Intergenic	1	0.488	5E-6	5.301029995663981	(Alcohol consumption)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NR	3p24.3	3	20311274	NR	RNY4P22 - VENTXP7	100873800	391518		      118.40	     1094.45	rs9871864-G	rs9871864	0	9871864	Intergenic	1	0.464	6E-6	5.221848749616356	(Alcohol dependence)	NR	NR	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	1p13.2	1	114135326	NR	SYT6			148281			rs529989-C	rs529989	0	529989	intron	0	0.443	6E-6	5.221848749616356		   8.56	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	1q21.2	1	150305958	NR	MRPS21			54460			rs12403795-A	rs12403795	0	12403795	intron	0	0.142	5E-6	5.301029995663981		  12.28	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	1q43	1	241730784	WDR64	WDR64			128025			rs10926554-A	rs10926554	0	10926554	intron	0	0.126	3E-6	5.522878745280337		  13.13	[NR]  unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	3p22.2	3	37813623	NR	ITGA9;ITGA9-AS1			3680;101928153			rs11129773-A	rs11129773	0	11129773	intron;intron	0	0.061	8E-6	5.096910013008055		  17.90	[NR] unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	3q27.3	3	186502274	CRYGS	DGKG - CRYGS	1608	1427		      140.04	       36.17	rs1868152-A	rs1868152	0	1868152	Intergenic	1	0.124	5E-8	7.30102999566398		  15.68	[NR]  unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	4p15.31	4	18127018	NR	KRT18P63 - RPL21P46	100288868	645174		      213.97	     1686.72	rs1503874-A	rs1503874	0	1503874	Intergenic	1	0.372	4E-6	5.397940008672037		   8.98	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	6q16.2	6	99335003	NR	FAXC			84553			rs17059400-C	rs17059400	0	17059400	intron	0	0.065	2E-6	5.698970004336018		  18.37	[NR] unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	8p23.2	8	4252510	CSMD1	CSMD1			64478			rs13259289-G	rs13259289	0	13259289	intron	0	0.399	6E-6	5.221848749616356		   8.68	[NR]  unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	12q24.33	12	129745862	NR	TMEM132D			121256			rs7979367-C	rs7979367	0	7979367	intron	0	0.402	2E-6	5.698970004336018		   9.22	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NR	17q25.3	17	77317253	SEPT9	SEPT9			10801			rs4788985-G	rs4788985	0	4788985	intron	0	0.492	9E-6	5.045757490560675		   8.35	[NR]  unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NR	1p32.3	1	53492930	GLIS1	DMRTB1 - GLIS1	63948	148979		       25.45	       13.30	rs1298637-A	rs1298637	0	1298637	Intergenic	1	0.261	5E-6	5.301029995663981		   5.97	[NR]  unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NR	2q37.1	2	230365456	SP140L	SP140L			93349			rs6712333-A	rs6712333	0	6712333	intron	0	0.119	5E-6	5.301029995663981		   8.32	[NR]  unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NR	7q36.2	7	153181248	NR	ACTR3B - DPP6	57180	1804		      293.53	      566.94	rs4285401-A	rs4285401	0	4285401	Intergenic	1	0.447	2E-6	5.698970004336018		   5.60	[NR] unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NR	8p23.1	8	11786406	NEIL2	NEIL2			252969			rs804292-G	rs804292	0	804292	UTR-3	0	0.234	3E-6	5.522878745280337		   6.53	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NR	8q24.13	8	122868979	NR	ZHX2			22882			rs6470120-A	rs6470120	0	6470120	intron	0	0.331	7E-7	6.154901959985743		   6.25	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NR	10q21.1	10	56579481	NR	ZWINT - MIR3924	11130	100500834		      218.18	      725.00	rs1907926-G	rs1907926	0	1907926	Intergenic	1	0.110	2E-7	6.698970004336019		   9.79	[NR] unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NR	1p32.3	1	54641346	GLIS1	MROH7;MROH7-TTC4			374977;100527960			rs1368882-A	rs1368882	0	1368882	nearGene-5;nearGene-5	0	0.379	2E-6	5.698970004336018		   1.75	[NR]  unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NR	3p22.3	3	33971713	NR	PDCD6IP - FECHP1	10015	2236		      102.01	      901.01	rs7620363-A	rs7620363	0	7620363	Intergenic	1	0.35	9E-6	5.045757490560675		   1.66	[NR] unit decrease	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NR	7p14.1	7	41582932	NR	SUGCT - INHBA	79783	3624		      722.17	      106.07	rs4724055-C	rs4724055	0	4724055	Intergenic	1	0.03	8E-6	5.096910013008055		   4.92	[NR] unit increase	Illumina [527,829]	N
03/13/2014	23942779	McGue M	08/14/2013	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/23942779	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NR	16p13.2	16	9120023	NR	C16orf72			29035			rs3743832-A	rs3743832	0	3743832	intron	0	0.39	4E-6	5.397940008672037		   1.72	[NR] unit decrease	Illumina [527,829]	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	9p23	9	12914397	C9orf150	LURAP1L - TDPX2	286343	7002		       91.34	       58.16	rs1953021-T	rs1953021	0	1953021	Intergenic	1	0.71	1E-6	5.999999999999999	(Age 20-81 years)	   1.35	[1.20-1.53] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	17q25.3	17	78874499	TIMP2	TIMP2			7077			rs2009196-C	rs2009196	0	2009196	intron	0	0.23	2E-6	5.698970004336018	(Age 20-81 years)	   1.41	[1.22-1.62] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	1q43	1	236748757	ACTN2	ACTN2			88			rs12048046-T	rs12048046	0	12048046	intron	0	0.9	3E-6	5.522878745280337	(Age 20-81 years)	   1.52	[1.28-1.81] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	19p13.3	19	5022593	JMJD2B	KDM4B			23030			rs263063-T	rs263063	0	263063	intron	0	0.08	6E-6	5.221848749616356	(Age 20-81 years)	   1.63	[1.32-2.01] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	2p14	2	67070277	ETAA1	LOC101927661			101927661			rs1833219-?	rs1833219	0	1833219	intron	0	0.72	8E-6	5.096910013008055	(Age 20-81 years)	   1.32	[1.16-1.49] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.1	8	11622948	BLK	LINC00208 - GATA4	83655	2626		       41.61	       53.98	rs2243407-?	rs2243407	0	2243407	Intergenic	1	0.65	9E-6	5.045757490560675	(Age 20-81 years)	   1.30	[1.16-1.47] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	7q33	7	135816721	FAM180A	FAM180A - LUZP6	389558	767558		       67.85	      110.03	rs13237474-T	rs13237474	0	13237474	Intergenic	1	0.03	2E-7	6.698970004336019	(Age 20-60 years)	   3.05	[2.00-4.65] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	3q25.32	3	158796571	MFSD1	RPL35AP9 - MFSD1	100271311	64747		       32.77	        5.36	rs6802315-?	rs6802315	0	6802315	Intergenic	1	0.45	3E-7	6.522878745280337	(Age 20-60 years)	   1.37	[1.2-1.54] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	4q35.2	4	189616909	FRG1	HSP90AA4P - LINC01262	3323	101928971		      141.06	       42.70	rs13145041-A	rs13145041	0	13145041	Intergenic	1	0.78	7E-7	6.154901959985743	(Age 20-60 years)	   1.65	[1.35-2.00] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6q25.3	6	160038159	IGF2R	IGF2R			3482			rs78797168-A	rs78797168	0	78797168	intron	0	0.93	2E-6	5.698970004336018	(Age 20-60 years)	   1.75	[1.39-2.22] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	15q25.2	15	84644014	WDR73	WDR73			84942			rs34069323-?	rs34069323	0	34069323	intron	0	0.01	2E-6	5.698970004336018	(Age 20-60 years)	   6.25	[2.94-14.29] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	3q21.1	3	122637604	PARP15	PARP15			165631			rs78411303-?	rs78411303	0	78411303	UTR-3	0	0.094	3E-6	5.522878745280337	(Age 20-60 years)	   1.96	[1.47-2.56] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8q24.12	8	121198650	SNTB1	SNTB1 - RPL35AP19	6641	100271322		      385.59	      181.44	rs7819988-T	rs7819988	0	7819988	Intergenic	1	0.55	3E-6	5.522878745280337	(Age 20-60 years)	   1.32	[1.17-1.48] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.2	8	3219437	CSMD1	CSMD1			64478			rs28455997-T	rs28455997	0	28455997	missense	0	0.84	3E-6	5.522878745280337	(Age 20-60 years)	   1.48	[1.26-1.75] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	1q32.1	1	204134490	ETNK2	ETNK2			55224			rs2293335-?	rs2293335	0	2293335	intron	0	0.3	5E-6	5.301029995663981	(Age 20-60 years)	   1.35	[1.19-1.54] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	5q35.1	5	172865303	ERGIC1	ERGIC1			57222			rs6890783-A	rs6890783	0	6890783	intron	0	0.01	5E-6	5.301029995663981	(Age 20-60 years)	   6.45	[2.89-14.38] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	2q22.1	2	140468740	LRP1B	LRP1B			53353			rs72899866-A	rs72899866	0	72899866	intron	0	0.22	5E-6	5.301029995663981	(Age 20-60 years)	   1.39	[1.21-1.60] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.1	8	11622948	LINC00208	LINC00208 - GATA4	83655	2626		       41.61	       53.98	rs2243407-?	rs2243407	0	2243407	Intergenic	1	0.64	6E-6	5.221848749616356	(Age 20-60 years)	   1.33	[1.18-1.49] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	19p13.3	19	5080636	KDM4B	KDM4B			23030			rs11673509-T	rs11673509	0	11673509	intron	0	0.08	6E-6	5.221848749616356	(Age 20-60 years)	   1.66	[1.34-2.07] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	14q21.1	14	37597370	FOXA1	FOXA1 - TTC6	3169	319089		        2.25	       25.24	rs12587630-A	rs12587630	0	12587630	Intergenic	1	0.98	7E-6	5.154901959985742	(Age 20-60 years)	   2.69	[1.75-4.15] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	2p23.3	2	27636450	GPN1	GPN1			11321			rs111571364-T	rs111571364	0	111571364	intron	0	0.02	8E-6	5.096910013008055	(Age 20-60 years)	   3.46	[2.01-5.97] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	6p21.32	6	33004627	HLA-DOA	HLA-DOA			3111			rs3128935-T	rs3128935	0	3128935	UTR-3	0	0.97	9E-6	5.045757490560675	(Age 20-60 years)	   2.28	[1.59-3.28] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	10p13	10	15558672	ITGA8	ITGA8			8516			rs28643277-A	rs28643277	0	28643277	intron	0	0.35	9E-6	5.045757490560675	(Age 20-60 years)	   1.32	[1.17-1.50] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	12p13.2	12	11405943	PRB2	PRB2 - HIGD1AP8	653247	100874451		       10.38	       75.42	rs71455379-?	rs71455379	0	71455379	Intergenic	1	0.06	9E-6	5.045757490560675	(Age 20-60 years)	   1.89	[1.43-2.5] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	10q26.3	10	132482311	C10orf91	C10orf91 - LINC01165	170393	100128830		       33.99	       38.52	rs73389468-?	rs73389468	0	73389468	Intergenic	1	0.98	9E-6	5.045757490560675	(Age 20-60 years)	   2.78	[1.75-4.35] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.2	8	3231241	CSMD1	CSMD1			64478			rs1540507-?	rs1540507	0	1540507	intron	0	0.78	9E-6	5.045757490560675	(Age 20-81 years)	   1.47	[1.23-1.75] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	15q26.1	15	93170437	RGMA	LOC101927025			101927025			rs6497031-A	rs6497031	0	6497031	intron	0	0.17	5E-6	5.301029995663981	(Age 20-60 years)	   1.84	[1.41 - 2.39] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	8p23.1	8	11622948	BLK	LINC00208 - GATA4	83655	2626		       41.61	       53.98	rs2243407-?	rs2243407	0	2243407	Intergenic	1	0.65	6E-6	5.221848749616356	(Age 20-60 years)	   1.33	[1.18-1.52] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3p25.2	3	12881698	IQSEC1	MARK3P2 - IQSEC1	100421503	9922		       23.01	       15.35	rs2569991-C	rs2569991	0	2569991	Intergenic	1	0.22	1E-6	5.999999999999999	(Age 20-81 years)	    .20	[0.12-0.28] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	5q23.1	5	117177909	SEMA6A	RPS17P2 - RPL35AP15	6219	100271317		      461.21	      123.20	rs12153048-G	rs12153048	0	12153048	Intergenic	1	0.06	2E-6	5.698970004336018	(Age 20-81 years)	    .34	[0.20-0.48] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3q26.31	3	173462843	NLGN1	NLGN1			22871			rs11709498-C	rs11709498	0	11709498	intron	0	0.65	6E-6	5.221848749616356	(Age 20-81 years)	    .15	[0.089-0.221] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3p22.1	3	42766579	CCDC13	CCDC13			152206			rs339665-T	rs339665	0	339665	intron	0	0.95	6E-6	5.221848749616356	(Age 20-81 years)	    .41	[0.23-0.58] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	15q11.2	15	24777841	SNRPN	NPAP1 - SNRPN	23742	6638		       94.40	       45.81	rs8030136-T	rs8030136	0	8030136	Intergenic	1	0.17	6E-6	5.221848749616356	(Age 20-81 years)	    .19	[0.11-0.28] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3p26.1	3	4181932	SETMAR	SUMF1			285362			rs2587949-G	rs2587949	0	2587949	intron	0	0.44	8E-6	5.096910013008055	(Age 20-81 years)	    .14	[0.081-0.206] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	20q11.23	20	38349233	LBP	LBP			3929			rs11536940-A	rs11536940	0	11536940	intron	0	0.06	2E-6	5.698970004336018	(Age 20-60 years)	    .38	[0.23-0.54] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	17q24.3	17	70112276	KCNJ16	KCNJ16			3773			rs12936361-T	rs12936361	0	12936361	intron	0	0.83	5E-6	5.301029995663981	(Age 20-60 years)	    .23	[0.13-0.33] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	2q24.3	2	165287904	SCN2A	SCN2A			6326			rs16850317-T	rs16850317	0	16850317	intron	0	0.94	5E-6	5.301029995663981	(Age 20-60 years)	    .35	[0.20-0.50] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	18p11.31	18	3415833	TGIF1	TGIF1			7050			rs12457997-T	rs12457997	0	12457997	intron	0	0.67	5E-6	5.301029995663981	(Age 20-60 years)	    .17	[0.096-0.237] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	15q11.2	15	24679516	C15orf2	NPAP1			23742			rs12902137-T	rs12902137	0	12902137	UTR-3	0	0.72	6E-6	5.221848749616356	(Age 20-60 years)	    .18	[0.10-0.26] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	8q22.3	8	104688452	LRP12	LRP12 - RPL23P9	29967	100129377		       99.43	      292.69	rs4734806-G	rs4734806	0	4734806	Intergenic	1	0.16	6E-6	5.221848749616356	(Age 20-60 years)	    .21	[0.12-0.30] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	5q23.1	5	117177909	SEMA6A	RPS17P2 - RPL35AP15	6219	100271317		      461.21	      123.20	rs12153048-G	rs12153048	0	12153048	Intergenic	1	0.05	6E-6	5.221848749616356	(Age 20-60 years)	    .35	[0.20-0.49] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	13q33.2	13	105415571	DAOA	RPL7P45 - DAOA-AS1	100271225	282706		      600.44	       43.48	rs17655948-T	rs17655948	0	17655948	Intergenic	1	0.64	7E-6	5.154901959985742	(Age 20-60 years)	    .16	[0.093-0.234] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	21q21.3	21	29872161	GRIK1	GRIK1			2897			rs457352-T	rs457352	0	457352	intron	0	0.13	7E-6	5.154901959985742	(Age 20-60 years)	    .24	[0.14-0.34] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	9q31.1	9	104915008	ABCA1	ABCA1;LOC102724761			19;102724761			rs4149263-A	rs4149263	0	4149263	intron;intron	0	0.8	7E-6	5.154901959985742	(Age 20-81 years)	    .06	[0.032-0.080] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	11q24.3	11	130659324	ADAMTS15	BAK1P2 - MIR8052	601	102466873		      111.67	        7.41	rs12792526-A	rs12792526	0	12792526	Intergenic	1	0.87	3E-6	5.522878745280337	(Age 20-81 years)	    .20	[0.12-0.29] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xq26.1	23	129970758	BCORL1	UTP14A - BCORL1	10813	63035		       41.00	        9.54	rs2361405-A	rs2361405	0	2361405	Intergenic	1	0.89	5E-6	5.301029995663981	(Age 20-60 years)	    .07	[0.038-0.097] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	17q25.3	17	78223864	BIRC5	BIRC5			332			rs17879146-T	rs17879146	0	17879146	ncRNA	0	0.99	1E-6	5.999999999999999	(Age 20-60 years)	    .25	[0.15-0.36] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	12q22	12	92593432	C12orf74	CLLU1 - C12orf74	574028	338809		      162.43	      109.41	rs11829373-C	rs11829373	0	11829373	Intergenic	1	0.1	7E-6	5.154901959985742	(Age 20-60 years)	    .08	[0.045-0.115] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q25.1	15	79927251	C15orf37	C15orf37 - FDPSP9	283687	401822		        2.40	       17.19	rs75598935-A	rs75598935	0	75598935	Intergenic	1	0.02	6E-6	5.221848749616356	(Age 20-60 years)	    .17	[0.098-0.246] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	16q23.3	16	83750223	CDH13	CDH13			1012			rs149740259-A	rs149740259	0	149740259	intron	0	0.01	9E-6	5.045757490560675	(Age 20-60 years)	    .24	[0.14-0.35] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	5q21.1	5	99257749	CHD1	RPS9P3 - GUSBP8	100133054	441066		      302.74	      274.88	rs1500251-A	rs1500251	0	1500251	Intergenic	1	0.2	9E-6	5.045757490560675	(Age 20-81 years)	    .05	[0.031-0.078] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	10q21.1	10	52370993	DKK1	DKK1 - RPL31P44	22943	644522		       53.34	       18.07	rs112125027-A	rs112125027	0	112125027	Intergenic	1	0.94	5E-6	5.301029995663981	(Age 20-60 years)	    .10	[0.060-0.149] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	3p11.1	3	88928747	EPHA3	NDUFA5P5 - NARG2P2	100130327	728432		      327.35	       19.65	rs12497795-T	rs12497795	0	12497795	Intergenic	1	0.1	2E-6	5.698970004336018	(Age 20-81 years)	    .08	[0.046-0.110] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	21q22.2	21	38911809	ETS2	RPSAP64 - RPL23AP12	100873797	391282		       16.61	      215.75	rs9979250-T	rs9979250	0	9979250	Intergenic	1	0.04	4E-7	6.397940008672037	(Age 20-60 years)	    .15	[0.092-0.208] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	7p15.3	7	22954567	FAM126A	FAM126A			84668			rs73082373-T	rs73082373	0	73082373	intron	0	0.95	6E-6	5.221848749616356	(Age 20-60 years)	    .13	[0.071-0.181] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xp21.1	23	33793724	FAM47A	TBCAP1 - FAM47A	494540	158724		      751.83	      336.03	rs113065570-T	rs113065570	0	113065570	Intergenic	1	0.32	8E-6	5.096910013008055	(Age 20-60 years)	    .05	[0.026-0.067] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	19q13.42	19	55599709	FIZ1	FIZ1;ZNF524			84922;147807			rs140900046-A	rs140900046	0	140900046	nearGene-5;nearGene-5	0	0.01	4E-6	5.397940008672037	(Age 20-60 years)	    .34	[0.20-0.49] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	10q26.13	10	123127609	HMX3	ACADSB - HMX3	36	340784		       69.32	        8.44	rs61862032-T	rs61862032	0	61862032	Intergenic	1	0.98	9E-6	5.045757490560675	(Age 20-60 years)	    .20	[0.11-0.28] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xq26.2	23	132890476	HS6ST2	HS6ST2			90161			rs7892161-T	rs7892161	0	7892161	intron	0	0.54	9E-6	5.045757490560675	(Age 20-60 years)	    .04	[0.023-0.060] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	Xq11.1	23	63405319	LOC92249	SPIN4 - ARHGEF9	139886	23229		       53.98	      229.65	rs10127000-T	rs10127000	0	10127000	Intergenic	1	0.06	6E-6	5.221848749616356	(Age 20-60 years)	    .10	[0.057-0.144] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q21.2	18	54000198	MBD2	RPL29P32 - MBD2	390856	8932		      394.57	      151.40	rs1995138-A	rs1995138	0	1995138	Intergenic	1	0.08	4E-6	5.397940008672037	(Age 20-60 years)	    .10	[0.055-0.136] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	6q22.31	6	124238586	NKAIN2	NKAIN2			154215			rs77490164-T	rs77490164	0	77490164	intron	0	0.05	8E-7	6.096910013008056	(Age 20-60 years)	    .13	[0.077-0.179] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	6p22.3	6	24062560	NRSN1	HNRNPA1P58 - NRSN1	100289286	140767		       60.13	       63.63	rs146696563-T	rs146696563	0	146696563	Intergenic	1	0.99	4E-6	5.397940008672037	(Age 20-60 years)	    .24	[0.14-0.34] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	3p22.3	3	34218600	PDCD6IP	LOC101928114			101928114			rs145744974-A	rs145744974	0	145744974	intron	0	0.99	4E-6	5.397940008672037	(Age 20-60 years)	    .29	[0.17-0.42] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	19p13.11	19	18376857	PGPEP1	PGPEP1 - GDF15	54858	9518		        6.90	        9.30	rs78015699-T	rs78015699	0	78015699	Intergenic	1	0.02	7E-6	5.154901959985742	(Age 20-60 years)	    .22	[0.12-0.31] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q11.2	18	26205684	PSMA8	NPM1P2			4871			rs8097810-A	rs8097810	0	8097810		0	0.94	4E-6	5.397940008672037	(Age 20-60 years)	    .11	[0.060-0.150] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	10q23.31	10	87992454	PTEN	RPL11P3 - MED6P1	100271271	100128990		       46.37	       55.70	rs149784093-T	rs149784093	0	149784093	Intergenic	1	0.01	3E-6	5.522878745280337	(Age 20-60 years)	    .22	[0.13-0.32] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	20q12	20	42212139	PTPRT	PTPRT			11122			rs7345986-A	rs7345986	0	7345986	intron	0	0.74	9E-6	5.045757490560675	(Age 20-60 years)	    .06	[0.036-0.092] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18p11.32	18	120296	ROCK1P1	ROCK1P1			727758			rs57440971-T	rs57440971	0	57440971	intron	0	0.06	4E-6	5.397940008672037	(Age 20-60 years)	    .14	[0.082-0.201] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q13.3	15	33304875	RYR3	LOC101928134			101928134			rs2676071-T	rs2676071	0	2676071	intron	0	0.58	7E-6	5.154901959985742	(Age 20-81 years)	    .04	[0.025-0.064] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	17q24.1	17	64604817	SMURF2	SMURF2			64750			rs111854052-A	rs111854052	0	111854052	intron	0	0.99	9E-6	5.045757490560675	(Age 20-60 years)	    .32	[0.18-0.47] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q11.2	18	25825224	SS18	ZNF521 - SS18	25925	6760		      472.97	      191.03	rs9966832-A	rs9966832	0	9966832	Intergenic	1	0.98	5E-6	5.301029995663981	(Age 20-81 years)	    .15	[0.086-0.215] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q25.1	15	79900633	ST20, MTHFS	ST20;ST20-MTHFS			400410;100528021			rs36035742-T	rs36035742	0	36035742	intron;intron	0	0.05	4E-6	5.397940008672037	(Age 20-60 years)	    .12	[0.072-0.176] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q23	15	71284416	THSD4	THSD4			79875			rs1442779-A	rs1442779	0	1442779	intron	0	0.28	7E-6	5.154901959985742	(Age 20-60 years)	    .05	[0.031-0.078] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	19q13.42	19	55579966	ZNF579	ZNF579			163033			rs149546760-C	rs149546760	0	149546760	intron	0	0.01	5E-6	5.301029995663981	(Age 20-60 years)	    .34	[0.19-0.48] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	6q22.31	6	124084010	NKAIN2	NKAIN2			154215			rs13204086-T	rs13204086	0	13204086	intron	0	0.04	2E-6	5.698970004336018	(Age 20-81 years)	    .16	[0.095-0.228] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q11.2	18	26184271	PSMA8	PSMA8			143471			rs11877878-A	rs11877878	0	11877878	intron	0	0.93	5E-6	5.301029995663981	(Age 20-81 years)	    .09	[0.052-0.129] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	3p14.3	3	55529316	ERC2	ERC2			26059			rs1875110-T	rs1875110	0	1875110	intron	0	0.95	4E-6	5.397940008672037	(Age 20-60 years)	    .13	[0.074-0.183] unit decrease	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	11q24.3	11	130659324	ADAMTS15	BAK1P2 - MIR8052	601	102466873		      111.67	        7.41	rs12792526-A	rs12792526	0	12792526	Intergenic	1	0.87	4E-6	5.397940008672037	(Age 20-60 years)	    .22	[0.13-0.31] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	14q24.1	14	68893914	ACTN1	ACTN1			87			rs12050161-T	rs12050161	0	12050161	intron	0	0.84	4E6	-6.602059991327962	(Age 20-60 years)	    .07	[0.040-0.100] unit increase	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	2q21.1	2	129276753	RAB6C	ISCA1P6 - RPL22P7	100130549	100129819		      757.50	      663.10	rs7567687-?	rs7567687	0	7567687	Intergenic	1	0.46	8E-7	6.096910013008056	(Age 20-81 years)	   1.32	[1.18-1.47] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	18q12.3	18	42361001	PIK3C3	LINC00907			284260			rs346452-?	rs346452	0	346452	intron	0	0.54	2E-6	5.698970004336018	(Age 20-81 years)	   1.32	[1.18-1.47] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	16p13.3	16	7089172	A2BP1	RBFOX1			54715			rs11866781-?	rs11866781	0	11866781	intron	0	0.58	5E-6	5.301029995663981	(Age 20-81 years)	   1.30	[1.16-1.45] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	5q33.1	5	152188538	NMUR2	RNA5SP198 - CTB-12O2.1	100873460	101927115		      312.85	       78.73	rs294958-A	rs294958	0	294958	Intergenic	1	0.48	5E-6	5.301029995663981	(Age 20-81 years)	   1.29	[1.16-1.44] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	3p24.3	3	22432238	ZNF385D	HMGB1P5 - RANP7	10354	100874192		       49.37	      472.41	rs17011371-A	rs17011371	0	17011371	Intergenic	1	0.95	6E-6	5.221848749616356	(Age 20-81 years)	   2.09	[1.52-2.88] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8p23.1	8	6964095	DEFA1	DEFA9P - DEFA10P	449492	449493		        3.93	        4.05	rs2738058-T	rs2738058	0	2738058	Intergenic	1	0.43	6E-6	5.221848749616356	(Age 20-81 years)	   1.29	[1.16-1.45] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	18q12.3	18	42443341	RIT2	LINC00907			284260			rs346221-A	rs346221	0	346221	intron	0	0.64	4E-6	5.397940008672037	(Age 20-81 years)	   1.31	[1.17-1.47] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	15q23	15	71284416	THSD4	THSD4			79875			rs1442779-?	rs1442779	0	1442779	intron	0	0.72	7E-6	5.154901959985742	(Age 20-81 years)	   1.33	[1.18-1.52] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8q24.23	8	138289135	FAM135B	FAM135B			51059			rs10875423-?	rs10875423	0	10875423	intron	0	0.18	9E-6	5.045757490560675	(Age 20-81 years)	   1.43	[1.22-1.67] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	5q22.1	5	111203694	CAMK4	RPS3AP21 - CAMK4	402287	814		       10.63	       20.56	rs1370967-A	rs1370967	0	1370967	Intergenic	1	0.04	8E-7	6.096910013008056	(Age 20-60 years)	   2.21	[1.61-3.02] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	5q22.1	5	111166731	WDR36	WDR36 - RPS3AP21	134430	402287		       36.23	       25.45	rs17132883-T	rs17132883	0	17132883	Intergenic	1	0.04	2E-6	5.698970004336018	(Age 20-60 years)	   2.19	[1.59-3.01] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	15q23	15	71282460	THSD4	THSD4			79875			rs9806183-C	rs9806183	0	9806183	intron	0	0.66	2E-6	5.698970004336018	(Age 20-60 years)	   1.37	[1.20-1.57] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	3p12.3	3	76673615	ROBO2	ROBO2			6092			rs264537-C	rs264537	0	264537	intron	0	0.43	3E-6	5.522878745280337	(Age 20-60 years)	   1.35	[1.19-1.54] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	1p32.1	1	60225916	C1orf87	PGBD4P8 - NFIA	100421185	4774		      127.94	      851.36	rs17120400-?	rs17120400	0	17120400	Intergenic	1	0.9	4E-6	5.397940008672037	(Age 20-60 years)	   1.69	[1.35-2.13] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8p23.1	8	6964095	DEFA1	DEFA9P - DEFA10P	449492	449493		        3.93	        4.05	rs2738058-T	rs2738058	0	2738058	Intergenic	1	0.43	7E-6	5.154901959985742	(Age 20-60 years)	   1.33	[1.18-1.51] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	8q12.3	8	62709010	NKAIN3	NKAIN3			286183			rs2882926-A	rs2882926	0	2882926	intron	0	0.11	7E-6	5.154901959985742	(Age 20-60 years)	   1.56	[1.28-1.90] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	2q21.1	2	129276753	RAB6C	ISCA1P6 - RPL22P7	100130549	100129819		      757.50	      663.10	rs7567687-?	rs7567687	0	7567687	Intergenic	1	0.47	8E-6	5.096910013008055	(Age 20-60 years)	   1.32	[1.18-1.49] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/09/2014	24024966	Teumer A	08/14/2013	J Clin Periodontol	http://www.ncbi.nlm.nih.gov/pubmed/24024966 	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	22q11.22	22	22152176	VPREB1	IGL			3535			rs11089937-A	rs11089937	0	11089937		0	0.58	8E-6	5.096910013008055	(Age 20-60 years)	   1.33	[1.17-1.51] 	Affymetrix & Illumina [up to 17,585,496] (Imputed)	N
03/01/2014	23937595	Al Safar HS	08/13/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23937595	A genome-wide search for type 2 diabetes susceptibility genes in an extended arab family.	Type 2 diabetes	66 Arab ancestry cases and 112 Arab ancestry controls from one extended family	116 Arab ancestry cases, 199 Arab ancestry controls	4p12	4	46966033	GABRA4, COX7B2	GABRA4			2557			rs2055942-?	rs2055942	0	2055942	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [443,502]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	2p22.2	2	36448387	CRIM1	CRIM1			51232			rs848512-?	rs848512	0	848512	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	19q13.43	19	56620870	ZNF71	ZNF71			58491			rs10404342-?	rs10404342	0	10404342	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	9p13.3	9	35700840	TLN1	TLN1			7094			rs4879926-?	rs4879926	0	4879926	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	4q26	4	118942321	SYNPO2	SYNPO2			171024			rs1472066-?	rs1472066	0	1472066	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.f. specific) 	404 Korean ancestry D.f.-positive cases, 473 Korean ancestry D.f.-negative cases	NA	14q32.2	14	98020208	LOC730217	C14orf64 - C14orf177	388011	283598		       42.08	      691.41	rs10142119-G	rs10142119	0	10142119	Intergenic	1	0.516	2E-7	6.698970004336019		   1.96	[1.52-2.56] 	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.f. specific) 	404 Korean ancestry D.f.-positive cases, 473 Korean ancestry D.f.-negative cases	NA	16q23.3	16	83325171	CDH13	CDH13			1012			rs6563898-G	rs6563898	0	6563898	intron	0	0.523	8E-6	5.096910013008055		   1.82	[1.39-2.38] 	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.p. specific) 	329 Korean ancestry D.p.-positive cases, 548 Korean ancestry D.p.-negative cases	NA	8q11.23	8	53206654	OPRK1	EI24P5 - OPRK1	100533660	4986		       11.28	       19.06	rs1425902-G	rs1425902	0	1425902	Intergenic	1	0.262	1E-6	5.999999999999999		   2.14	[1.56-2.94] 	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.p. specific) 	329 Korean ancestry D.p.-positive cases, 548 Korean ancestry D.p.-negative cases	NA	2q36.2	2	224693325	DOCK10	CUL3 - DOCK10	8452	55619		      107.93	       71.77	rs1843834-A	rs1843834	0	1843834	Intergenic	1	0.183	4E-6	5.397940008672037		   2.14	[1.54-2.96] 	Illumina [442,089]	N
03/07/2014	23967269	Kim JH	08/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23967269	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.p. specific) 	329 Korean ancestry D.p.-positive cases, 548 Korean ancestry D.p.-negative cases	NA	11q24.1	11	123777625	OR6X1	OR6X1 - OR6M1	390260	390261		       23.11	       27.78	rs17744026-T	rs17744026	0	17744026	Intergenic	1	0.905	3E-6	5.522878745280337		   4.00	[2.08-7.69] 	Illumina [442,089]	N
03/13/2014	23953852	Pan Y	08/13/2013	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/23953852	Genome-wide association studies of maximum number of drinks.	Alcohol consumption	2,687 European ancestry individuals	3,137 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to 818,773]	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8q13.3	8	69768748	SLCO5A1	SLCO5A1			81796			rs10090896-A	rs10090896	0	10090896	intron	0	NR	2E-6	5.698970004336018		    .04	[0.02-0.06] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	7p21.3	7	13400597	LOC100131022	RBMX2P4 - RPL26P21	100862677	646161		      477.68	      471.19	rs10255329-C	rs10255329	0	10255329	Intergenic	1	NR	7E-6	5.154901959985742		    .06	[0.03-0.08] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	9p21.1	9	31419917	LOC138412	LINC01243 - HMGB3P23	101929620	100288563		       38.43	      223.43	rs10435736-C	rs10435736	0	10435736	Intergenic	1	NR	4E-7	6.397940008672037		    .05	[0.03-0.07] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	18q12.3	18	40640135	KC6	RPL17P45 - KC6	100271414	641516		      495.63	      840.14	rs10502739-C	rs10502739	0	10502739	Intergenic	1	NR	8E-6	5.096910013008055		    .04	[0.02-0.06] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8p12	8	30579335	GTF2E2	GTF2E2			2961			rs10503871-C	rs10503871	0	10503871	intron	0	NR	3E-6	5.522878745280337		    .04	[0.02-0.05] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	9q33.2	9	121798574	DAB2IP	DAB2IP - TTLL11	153090	158135		       13.04	       17.10	rs10818593-C	rs10818593	0	10818593	Intergenic	1	NR	9E-6	5.045757490560675		    .08	[0.04-0.11] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	5p12	5	43382756	CCL28	CCL28			56477			rs11951515-C	rs11951515	0	11951515	intron	0	NR	4E-7	6.397940008672037		    .04	[0.03-0.06] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	3p14.2	3	62615691	CADPS	CADPS			8618			rs1231831-C	rs1231831	0	1231831	intron	0	NR	2E-6	5.698970004336018		    .05	[0.03-0.07] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	2p21	2	45977900	PRKCE	PRKCE			5581			rs13396424-G	rs13396424	0	13396424	intron	0	NR	8E-6	5.096910013008055		    .08	[0.04-0.11] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	2p13.1	2	73641201	NAT8	NAT8			9027			rs13538-A	rs13538	0	13538	missense	0	NR	2E-23	22.69897000433602		    .09	[0.07-0.10] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	20p12.1	20	13242211	C20orf82	ISM1			140862			rs1407335-A	rs1407335	0	1407335	intron	0	NR	7E-6	5.154901959985742		    .04	[0.02-0.05] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8p12	8	32282136	NRG1	NRG1			3084			rs1487141-C	rs1487141	0	1487141	intron	0	NR	3E-6	5.522878745280337		    .04	[0.02-0.06] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	11q12.2	11	60545390	MS4A13	MS4A13 - LINC00301	503497	283197		        2.67	       70.36	rs1941027-C	rs1941027	0	1941027	Intergenic	1	NR	4E-6	5.397940008672037		    .04	[0.02-0.04] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	14q22.2	14	54257205	CDKN3	ATP5C1P1 - CDKN3	645560	1033		      265.18	      139.73	rs2143963-C	rs2143963	0	2143963	Intergenic	1	NR	9E-6	5.045757490560675		    .07	[0.04-0.10] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	10q21.1	10	52582113	LOC399774	PRKRIRP3 - MBL2	399774	4153		      168.62	      178.75	rs2222800-A	rs2222800	0	2222800	Intergenic	1	NR	4E-6	5.397940008672037		    .04	[0.02-0.05] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	1p31.1	1	73617352	LRRIQ3	KRT8P21 - LRRIQ3	126811	127255		      510.87	      408.66	rs2341263-C	rs2341263	0	2341263	Intergenic	1	NR	3E-6	5.522878745280337		    .04	[0.02-0.06] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	10q26.3	10	129436108	MGMT	LINC01163 - MGMT	101927381	4255		     1118.38	       31.08	rs2388328-C	rs2388328	0	2388328	Intergenic	1	NR	5E-6	5.301029995663981		    .07	[0.04-0.09] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	12q12	12	40852478	CNTN1	CNTN1			1272			rs312274-A	rs312274	0	312274	intron	0	NR	4E-6	5.397940008672037		    .05	[0.03-0.08] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	16p13.3	16	3135736	ZNF213	ZNF213;LOC100507458			7760;100507458			rs560947-C	rs560947	0	560947	intron;nearGene-5	0	NR	9E-6	5.045757490560675		    .04	[0.02-0.06] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	20p12.3	20	6394813	LOC149844	FGFR3P3 - CASC20	100462816	101929244		      174.07	       31.92	rs6085533-A	rs6085533	0	6085533	Intergenic	1	NR	1E-6	5.999999999999999		    .04	[0.03-0.06] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	18q12.1	18	33418167	C18orf34	CCDC178			374864			rs6507022-C	rs6507022	0	6507022	intron	0	NR	9E-6	5.045757490560675		    .04	[0.02-0.06] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	2p13.1	2	73610828	ALMS1	ALMS1-IT1 - NAT8	100874291	9027		      151.35	       29.90	rs6546857-A	rs6546857	0	6546857	Intergenic	1	0.477	1E-23	23		    .09	[0.07-0.10] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	1p31.1	1	81932860	LPHN2	LPHN2			23266			rs6681544-C	rs6681544	0	6681544	intron	0	NR	6E-6	5.221848749616356		    .04	[0.03-0.06] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	6q25.2	6	153913732	LOC729635	MTND4P13 - HMGB3P19	100862853	729635		      243.91	       24.73	rs6900489-C	rs6900489	0	6900489	Intergenic	1	NR	5E-6	5.301029995663981		    .06	[0.03-0.08] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	5q23.1	5	116204876	COMMD10	COMMD10			51397			rs7709377-A	rs7709377	0	7709377	intron	0	NR	4E-6	5.397940008672037		    .04	[0.02-0.06] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	8p12	8	29097375	KIF13B	KIF13B			23303			rs7844537-G	rs7844537	0	7844537	intron	0	NR	6E-6	5.221848749616356		    .05	[0.03-0.07] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	20q13.33	20	61190239	CDH4	MIR548AG2 - CDH4	100616440	1002		      625.61	       62.19	rs860148-C	rs860148	0	860148	Intergenic	1	NR	8E-6	5.096910013008055		    .04	[0.02-0.05] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	6q16.1	6	98448791	LOC100129158	EIF4EBP2P3 - POU3F2	100190924	5454		      268.95	      385.91	rs9321063-A	rs9321063	0	9321063	Intergenic	1	NR	2E-6	5.698970004336018		    .07	[0.04-0.10] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	13q14.11	13	42017703	DGKH	RPS28P8 - DGKH	100271381	160851		       14.07	       22.33	rs9532969-C	rs9532969	0	9532969	Intergenic	1	NR	3E-6	5.522878745280337		    .05	[0.03-0.06] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	7q21.11	7	82485924	CACNA2D1	CACNA2D1 - MTHFD2P5	781	442707		       42.21	      102.85	rs10262537-C	rs10262537	0	10262537	Intergenic	1	NR	7E-6	5.154901959985742		    .08	[0.04-0.11] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	12q21.1	12	72769371	TRHDE	CHCHD3P2 - RPL31P48	100422354	645654		      158.05	      879.27	rs10879490-A	rs10879490	0	10879490	Intergenic	1	NR	9E-6	5.045757490560675		    .14	[0.08-0.21] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	8q24.21	8	128268703	PVT1	MIR1208 - LINC01263	100302281	101927774		      118.52	      136.57	rs11775199-A	rs11775199	0	11775199	Intergenic	1	NR	7E-6	5.154901959985742		    .11	[0.06-0.16] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	5q33.3	5	158256517	LOC100130177	MARK2P11 - EBF1	100421484	1879		      266.53	      439.39	rs11957368-C	rs11957368	0	11957368	Intergenic	1	NR	4E-6	5.397940008672037		    .15	[0.09-0.21] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	10p15.3	10	1855784	LOC100129465	ADARB2-AS1 - LINC00700	642394	282980		      298.80	      149.69	rs12360000-A	rs12360000	0	12360000	Intergenic	1	NR	6E-6	5.221848749616356		    .14	[0.08-0.20] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	2p13.3	2	69586326	AAK1	AAK1			22848			rs12987661-C	rs12987661	0	12987661	intron	0	NR	6E-6	5.221848749616356		    .13	[0.07-0.18] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	2q21.1	2	130787619	CYCSP8	CYCSP8 - ARHGEF4	360160	50649		       10.66	       49.30	rs13395546-A	rs13395546	0	13395546	Intergenic	1	NR	1E-6	5.999999999999999		    .16	[0.10-0.23] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	11p15.3	11	11962338	DKK3	USP47 - DKK3	55031	27122		        3.01	         .66	rs1472189-C	rs1472189	0	1472189	Intergenic	1	NR	8E-6	5.096910013008055		    .11	[0.06-0.16] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	1p21.3	1	94868631	SLC44A3	SLC44A3			126969			rs17520351-C	rs17520351	0	17520351	intron	0	NR	4E-6	5.397940008672037		    .20	[0.12-0.29] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	15q14	15	39251745	C15orf54	C15orf54			400360			rs17691453-C	rs17691453	0	17691453	intron	0	NR	1E-6	5.999999999999999		    .10	[0.06-0.15] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	18p11.32	18	1206983	LOC100130247	COX6CP3 - LINC00470	100130247	56651		       29.91	       61.33	rs1826508-C	rs1826508	0	1826508	Intergenic	1	NR	4E-6	5.397940008672037		    .08	[0.04-0.11] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	13q32.2	13	97548318	LOC121906	PSMA6P4 - RPL7AP61	121906	100271539		       71.69	      353.33	rs2770228-A	rs2770228	0	2770228	Intergenic	1	NR	9E-6	5.045757490560675		    .08	[0.05-0.12] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	17q21.32	17	48680213	LOC729146	MIR196A1 - RPL9P28	406972	729146		       47.65	       10.80	rs3096644-G	rs3096644	0	3096644	Intergenic	1	NR	6E-6	5.221848749616356		    .08	[0.04-0.11] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	9p13.2	9	37916411	SHB	SHB			6461			rs3747547-C	rs3747547	0	3747547	UTR-3	0	NR	5E-6	5.301029995663981		    .09	[0.05-0.13] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	8q24.13	8	125855261	LOC100130231	TRIB1 - LINC00861	10221	100130231		      416.86	       67.26	rs4006531-A	rs4006531	0	4006531	Intergenic	1	NR	7E-7	6.154901959985743		    .11	[0.07-0.16] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	11p15.4	11	3701074	NUP98	NUP98			4928			rs685782-C	rs685782	0	685782	intron	0	NR	7E-6	5.154901959985742		    .19	[0.05-0.13] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	9p21.3	9	25414053	TUSC1	IZUMO3 - TUSC1	100129669	286319		      868.16	      262.34	rs7021404-C	rs7021404	0	7021404	Intergenic	1	NR	8E-6	5.096910013008055		    .11	[0.06-0.15] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	6q12	6	64952728	LOC727977	EYS			346007			rs7767572-A	rs7767572	0	7767572	intron	0	NR	8E-6	5.096910013008055		    .10	[0.06-0.15] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	3p14.1	3	64043707	PSMD6	PSMD6 - PRICKLE2-AS1	9861	100652759		       19.70	       24.26	rs831574-A	rs831574	0	831574	Intergenic	1	NR	8E-6	5.096910013008055		    .16	[0.09-0.23] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	9p22.3	9	16385134	BNC2	C9orf92 - BNC2	100129385	54796		      108.82	       24.37	rs9406636-A	rs9406636	0	9406636	Intergenic	1	NR	9E-7	6.045757490560675		    .09	[0.05-0.13] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	7q22.1	7	103534997	RELN	RELN			5649			rs1008126-C	rs1008126	0	1008126	intron	0	NR	8E-6	5.096910013008055		    .09	[0.05-0.14] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	9p22.3	9	16512750	BNC2	BNC2			54796			rs10124550-A	rs10124550	0	10124550	intron	0	NR	7E-7	6.154901959985743		    .16	[0.09-0.21] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	5q33.1	5	151366473	LOC402233	ATP6V1G1P5 - SLC36A1	100462840	206358		       46.70	       70.52	rs10463316-A	rs10463316	0	10463316	Intergenic	1	0.642	2E-10	9.698970004336017		    .14	[0.10-0.18] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	9p22.3	9	15104563	PSIP1P	PSIP1P1 - TTC39B	353329	158219		       47.96	       66.28	rs10756650-A	rs10756650	0	10756650	Intergenic	1	NR	5E-6	5.301029995663981		    .10	[0.06-0.15] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	8q21.13	8	80119587	TPD52	TPD52			7163			rs10957961-A	rs10957961	0	10957961	intron	0	NR	2E-7	6.698970004336019		    .15	[0.10-0.23] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	9q34.11	9	129576791	C9orf50	LINC00963 - NTMT1	100506190	28989		       63.11	       32.09	rs10988428-G	rs10988428	0	10988428	Intergenic	1	NR	8E-6	5.096910013008055		    .12	[0.07-0.17] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	10p12.1	10	24935533	PRTFDC1	PRTFDC1			56952			rs11014306-C	rs11014306	0	11014306	intron	0	NR	4E-6	5.397940008672037		    .10	[0.06-0.14] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	10q21.3	10	66206816	CTNNA3	CTNNA3			29119			rs12251332-C	rs12251332	0	12251332	intron	0	NR	5E-8	7.30102999566398		    .17	[0.11-0.23] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	4p15.32	4	17219610	LOC729006	MTND5P4 - RPS7P6	100873200	100270869		      157.45	      208.06	rs12643440-C	rs12643440	0	12643440	Intergenic	1	NR	5E-6	5.301029995663981		    .17	[-0.10-0.25] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	13q33.3	13	107839244	FAM155A	FAM155A			728215			rs1509091-C	rs1509091	0	1509091	intron	0	NR	3E-6	5.522878745280337		    .11	[0.06-0.15] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	12p11.22	12	28662859	LOC100130792	RPL29P27 - FAR2	100130792	55711		       97.69	      486.14	rs1606355-A	rs1606355	0	1606355	Intergenic	1	NR	2E-6	5.698970004336018		    .20	[0.12-0.28] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	16q21	16	64601500	LOC729217	RPS15AP34 - CDH11	390735	1009		     1250.35	      281.39	rs16967753-C	rs16967753	0	16967753	Intergenic	1	NR	1E-6	5.999999999999999		    .15	[0.09-0.21] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	18p11.22	18	10321350	APCDD1	RNA5SP450 - LINC01254	100873695	101927350		      397.33	       83.78	rs206626-A	rs206626	0	206626	Intergenic	1	NR	2E-6	5.698970004336018		    .13	[0.07-0.18] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	15q21.2	15	52480826	MYO5A	MYO5A			4644			rs2222656-A	rs2222656	0	2222656	intron	0	NR	2E-6	5.698970004336018		    .12	[0.07-0.17] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	10q25.1	10	106738320	SORCS1	SORCS1			114815			rs2486152-A	rs2486152	0	2486152	intron	0	NR	7E-6	5.154901959985742		    .10	[0.06-0.15] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	17q21.32	17	47970290	CDK5RAP3	CDK5RAP3			80279			rs2597167-C	rs2597167	0	2597167	nearGene-5	0	NR	6E-6	5.221848749616356		    .14	[0.08-0.2] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	3q29	3	195017144	C3orf21	FAM43A - XXYLT1	131583	152002		      328.11	       51.14	rs2676917-G	rs2676917	0	2676917	Intergenic	1	NR	7E-6	5.154901959985742		    .12	[0.07-0.17] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	5p15.2	5	10701402	DAP	DAP			1611			rs3756407-A	rs3756407	0	3756407	intron	0	NR	5E-6	5.301029995663981		    .14	[0.2-0.08] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	6p22.3	6	22709510	LOC389370	HDGFL1 - RPL6P18	154150	100131805		      138.99	      393.15	rs4712709-C	rs4712709	0	4712709	Intergenic	1	NR	6E-6	5.221848749616356		    .10	[0.06-0.14] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	17p11.2	17	16913229	LOC100129535	COTL1P1 - TBC1D27	27170	96597		       57.11	       13.28	rs4792793-C	rs4792793	0	4792793	Intergenic	1	NR	4E-6	5.397940008672037		    .12	[0.07-0.17] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	7p21.3	7	8118257	ICA1	ICA1			3382			rs6463768-C	rs6463768	0	6463768	intron	0	NR	1E-6	5.999999999999999		    .19	[0.11-0.27] unit increase	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	6q15	6	89589491	ANKRD6	ANKRD6			22881			rs6939321-C	rs6939321	0	6939321	intron	0	NR	4E-6	5.397940008672037		    .16	[0.09-0.23] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
03/04/2014	23934736	Yu B	08/11/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23934736	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	15q21.1	15	48305317	SLC12A1	SLC12A1 - DUT	6557	1854		        1.24	       25.85	rs964611-A	rs964611	0	964611	Intergenic	1	NR	8E-6	5.096910013008055		    .15	[0.09-0.22] unit decrease	Affymetrix [~2.5 million] (Imputed)	N
02/21/2014	23933737	Khor CC	08/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23933737	Genome-wide association study identifies ZFHX1B as a susceptibility locus for severe myopia.	Myopia (severe)	1,603 East Asian ancestry cases, 3,427 East Asian ancestry controls	1,241 East Asian ancestry cases, 3,559 East Asian ancestry controls	2q22.3	2	144466053	ZFHX1B	ZEB2;LOC102723797			9839;102723797			rs13382811-T	rs13382811	0	13382811	intron;nearGene-5	0	0.275	6E-10	9.221848749616356		   1.26	[NR] 	Illumina [250,531]	N
02/21/2014	23933737	Khor CC	08/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23933737	Genome-wide association study identifies ZFHX1B as a susceptibility locus for severe myopia.	Myopia (severe)	1,603 East Asian ancestry cases, 3,427 East Asian ancestry controls	1,241 East Asian ancestry cases, 3,559 East Asian ancestry controls	8q24.12	8	120598198	SNTB1	SNTB1			6641			rs6469937-A	rs6469937	0	6469937	intron	0	0.764	2E-9	8.698970004336019		   1.27	[NR] 	Illumina [250,531]	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	1p34.3	1	37627051	RSPO1, SNIP1, RSPO1, GNL2, EPHA10, DNALI1, CDCA8, C1orf109	RSPO1			284654			rs4074961-T	rs4074961	0	4074961	intron	0	0.4361	4E-13	12.39794000867204		    .07	[0.053-0.092] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	1q41	1	219602090	ZC3H11B, LOC388739, LOC728518	RIMKLBP2 - ZC3H11B	100422371	643136		      401.39	        5.84	rs994767-A	rs994767	0	994767	Intergenic	1	0.4085	1E-11	11		    .07	[0.051-0.092] unit decrease	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	3p21.1	3	53813035	SELK, IL17RB, CHDH, CACNA1D, ACTR8	CACNA1D			776			rs893363-A	rs893363	0	893363	UTR-3	0	0.6514	8E-6	5.096910013008055		    .05	[0.029-0.074] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	3q12.1	3	100125449	MGC4308, LOC648640, DOC1, C3ORF26, TBC1D23, FILIP1L, COL8A1	CMSS1			84319			rs9811920-A	rs9811920	0	9811920	intron	0	0.3975	5E-11	10.30102999566398		    .08	[0.056-0.104] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	3q28	3	189395472	TPRG1	TPRG1-AS2 - TP63	100874027	8626		      154.88	      235.69	rs6789327-A	rs6789327	0	6789327	Intergenic	1	0.0012	3E-7	6.522878745280337		   3.76	[2.33-5.2] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	4q13.1	4	64408122	SRD5A2L2	TECRL			253017			rs6836944-T	rs6836944	0	6836944	intron	0	0.0072	3E-6	5.522878745280337		    .86	[0.5-1.22] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	6q22.33	6	129498893	LAMA2, ARHGAP18	LAMA2			3908			rs12193446-A	rs12193446	0	12193446	intron	0	0.9092	1E-8	8		    .12	[0.08-0.164] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	8p11.23	8	37823908	GPR124, RAB11FIP1, PROSC, ERLIN2, BRF2	GPR124			25960			rs12676965-T	rs12676965	0	12676965	intron	0	0.8224	3E-6	5.522878745280337		    .06	[0.036-0.088] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	8q21.11	8	73555269	STAU2	STAU2			27067			rs4342585-C	rs4342585	0	4342585	intron	0	0.9826	9E-6	5.045757490560675		    .26	[0.14-0.37] unit decrease	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	9p21.3	9	21035308	PTPLAD2, KIAA1797, IFNB1	PTPLAD2 - IFNNP1	401494	654783		        3.67	       23.46	rs7867456-T	rs7867456	0	7867456	Intergenic	1	0.1789	9E-6	5.045757490560675		    .15	[0.084-0.216] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	9q34.11	9	128640942	ZER1, ZDHHC12, WDR34, SPTAN1, SET, PKN3, GLE1	WDR34			89891			rs12380424-T	rs12380424	0	12380424	intron	0	0.0282	6E-6	5.221848749616356		    .28	[0.16-0.4] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	11p11.2	11	45925913	PHF21A, PEX16, MAPK8IP1, LOC143678, GYLTL1B, CRY2, SLC35C1	GYLTL1B			120071			rs10838532-C	rs10838532	0	10838532	intron	0	0.248	2E-6	5.698970004336018		    .06	[0.035-0.085] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	12q13.3	12	56421497	TIMELESS, STAT2, SPRYD4, PAN2, MIP, IL23A, GLS2, APOF	TIMELESS			8914			rs2291738-T	rs2291738	0	2291738	intron	0	0.554	4E-7	6.397940008672037		    .05	[0.032-0.072] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	12q14.3	12	65996188	HMGA2	HMGA2 - MIR6074	8091	102464827		       29.90	       27.43	rs10400419-T	rs10400419	0	10400419	Intergenic	1	0.3837	2E-7	6.698970004336019		    .06	[0.035-0.078] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	13q34	13	111921290	Intergenic	TEX29 - SOX1	121793	6656		      577.04	      146.31	rs9577381-A	rs9577381	0	9577381	Intergenic	1	0.3263	2E-6	5.698970004336018		    .07	[0.042-0.101] unit decrease	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	15q14	15	34697425	GJD2, ACTC1	MIR1233-2 - GJD2	100422845	57369		      169.05	       55.02	rs11073058-T	rs11073058	0	11073058	Intergenic	1	0.4532	4E-11	10.39794000867204		    .07	[0.047-0.086] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	16q24.2	16	88287830	ZNF469	BANP - ZNF469	54971	84627		      210.51	      139.64	rs6540223-T	rs6540223	0	6540223	Intergenic	1	0.6751	7E-8	7.154901959985742		    .06	[0.04-0.086] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	20p12.3	20	6780865	BMP2	BMP2 - MIR8062	650	102465865		         .60	      590.74	rs6054512-T	rs6054512	0	6054512	Intergenic	1	0.6391	4E-7	6.397940008672037		    .06	[0.036-0.082] unit decrease	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	20q13.2	20	54846436	Intergenic	DOK5 - RPL12P4	55816	116149		      195.27	      228.12	rs1512060-T	rs1512060	0	1512060	Intergenic	1	0.0499	6E-6	5.221848749616356		    .21	[0.12-0.3] unit decrease	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	20q13.33	20	61683795	CDH4	CDH4			1002			rs16985437-A	rs16985437	0	16985437	intron	0	0.0092	3E-6	5.522878745280337		    .46	[0.27-0.65] unit increase	Illumina [2.5 million] (Imputed)	N
02/25/2014	24144296	Cheng CY	08/08/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/24144296	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	11p11.2	11	48518671	OR4A47	OR4A40P - OR4A43P	390116	390117		        5.41	        7.39	rs11039798-A	rs11039798	0	11039798	Intergenic	1	0.1345	4E-6	5.397940008672037		    .09	[0.051-0.126] unit increase	Illumina [2.5 million] (Imputed)	N
02/21/2014	23929743	Yadav S	08/08/2013	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/23929743	Genome-wide analysis of blood pressure variability and ischemic stroke.	Blood pressure variability	3,802 European ancestry individuals	3,900 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~2.5 million] (Imputed)	N
03/01/2014	23918034	Kuhnisch J	08/07/2013	Clin Oral Investig	http://www.ncbi.nlm.nih.gov/pubmed/23918034	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	4p15.2	4	24374210	PPARGC1A,MIR573	PPARGC1A - MIR573	10891	693158		      282.58	      145.98	rs17650401-T	rs17650401	0	17650401	Intergenic	1	0.077	2E-6	5.698970004336018		   6.90	[3.10-15.37] 	Affymetrix [2,013,491] (imputed)	N
03/01/2014	23918034	Kuhnisch J	08/07/2013	Clin Oral Investig	http://www.ncbi.nlm.nih.gov/pubmed/23918034	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	9q21.32	9	84126546	RMI1,SLC28A3	HMGN2P33 - SLC28A3	100874474	64078		       47.69	      149.30	rs13288553-T	rs13288553	0	13288553	Intergenic	1	0.148	2E-6	5.698970004336018		   4.25	[2.33-7.75] 	Affymetrix [2,013,491] (imputed)	N
03/01/2014	23918034	Kuhnisch J	08/07/2013	Clin Oral Investig	http://www.ncbi.nlm.nih.gov/pubmed/23918034	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	16q21	16	65861461	CDH5	LOC101927676			101927676			rs1126179-G	rs1126179	0	1126179	intron	0	0.595	3E-6	5.522878745280337		   2.13	[1.55-2.92] 	Affymetrix [2,013,491] (imputed)	N
03/01/2014	23918034	Kuhnisch J	08/07/2013	Clin Oral Investig	http://www.ncbi.nlm.nih.gov/pubmed/23918034	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	20q13.13	20	51054898	KCNG1,NFATC2	KCNG1 - RPSAP1	3755	170529		       31.76	       75.81	rs4811117-T	rs4811117	0	4811117	Intergenic	1	0.124	5E-6	5.301029995663981		   3.13	[1.92-5.13] 	Affymetrix [2,013,491] (imputed)	N
03/01/2014	23918034	Kuhnisch J	08/07/2013	Clin Oral Investig	http://www.ncbi.nlm.nih.gov/pubmed/23918034	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	22q13.2	22	43183043	TTLL12,SCUBE1	TTLL12			23170			rs13058467-C	rs13058467	0	13058467	missense	0	0.104	4E-7	6.397940008672037		   4.40	[2.5-7.8] 	Affymetrix [2,013,491] (imputed)	N
02/21/2014	23932459	Yao TC	08/06/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23932459	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	2q13	2	112926298	IL37	IL37 - IL36G	27178	56300		        7.42	       51.72	rs10864907-?	rs10864907	0	10864907	Intergenic	1	NR	7E-6	5.154901959985742	(FEV1)	NR	NR	Affymetrix [246,010]	N
02/21/2014	23932459	Yao TC	08/06/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23932459	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	10q22.3	10	76571560	C10orf11	MIR606 - ATP5G1P8	693191	100288222		     1019.01	      264.79	rs2637266-?	rs2637266	0	2637266	Intergenic	1	NR	2E-6	5.698970004336018	(FEV1/FVC)	NR	NR	Affymetrix [246,010]	N
02/21/2014	23932459	Yao TC	08/06/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23932459	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	15q23	15	71404547	THSD4, TLE3, UACA	THSD4			79875			rs12441227-?	rs12441227	0	12441227	intron	0	NR	3E-9	8.522878745280337	(FEV1/FVC)	NR	NR	Affymetrix [246,010]	N
02/21/2014	23932459	Yao TC	08/06/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23932459	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	17q12	17	36031260	CCL23	CCL23 - CCL18	6368	6362		       13.25	       33.02	rs712046-?	rs712046	0	712046	Intergenic	1	NR	3E-7	6.522878745280337	(FEV1/FVC)	NR	NR	Affymetrix [246,010]	N
02/21/2014	23932459	Yao TC	08/06/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23932459	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	17q24.2	17	67491905	PITPNC1	PITPNC1			26207			rs2017854-?	rs2017854	0	2017854	intron	0	NR	3E-6	5.522878745280337	(FEV1/FVC)	NR	NR	Affymetrix [246,010]	N
02/21/2014	23932459	Yao TC	08/06/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23932459	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	18q12.1	18	33686777	ASXL3	ASXL3			80816			rs4799710-?	rs4799710	0	4799710	intron	0	NR	7E-6	5.154901959985742	(FVC)	NR	NR	Affymetrix [246,010]	N
02/21/2014	23932459	Yao TC	08/06/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23932459	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	21q22.13	21	36429136	CHAF1B	ATP5J2LP - CLDN14	101241877	23562		       40.02	       31.49	rs2835345-?	rs2835345	0	2835345	Intergenic	1	NR	8E-6	5.096910013008055	(FEV1/FVC)	NR	NR	Affymetrix [246,010]	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	17q22	17	56533930	ANKFN1, NOG	ANKFN1 - RPL39P33	162282	100271521		       22.37	       39.11	rs17760268-C	rs17760268	0	17760268	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	21p11.1	21	10540506	BAGE2, TPTE, BAGE	TPTE			7179			rs10439884-A	rs10439884	0	10439884	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	22q11.1	22	15473564	CCT8L2, psiTPTE22	BNIP3P2 - YME1L1P1	100421754	23749		      123.55	       16.42	rs4911642-C	rs4911642	0	4911642	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	20q13.2	20	54798000	DOK5	DOK5 - RPL12P4	55816	116149		      146.83	      276.56	rs157640-G	rs157640	0	157640	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	14q13.1	14	34375170	EAPP, SNX6, C14orf147	EGLN3 - SPTSSA	112399	171546		      424.09	       57.77	rs1958589-C	rs1958589	0	1958589	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	10q26.11	10	117854099	EMX2OS, RAB11FIP2, EMX2	EMX2 - RAB11FIP2	2018	22841		      304.55	      150.82	rs10886159-C	rs10886159	0	10886159	Intergenic	1	NR	7E-7	6.154901959985743		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	6p21.32	6	32240547	HLA	TRNAI25			100189401			rs424232-C	rs424232	0	424232		0	NR	5E-21	20.30102999566398		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	16q22.2	16	71013581	HYDIN	HYDIN			54768			rs195656-A	rs195656	0	195656	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	11p15.5	11	2027258	IGF2AS, TH, MRPL23, TNNT3, SYT8, ASCL2, TNNI2, LSP1, IGF2, INS, H19	MIR675 - INS-IGF2	100033819	723961		       30.43	      101.85	rs4930144-A	rs4930144	0	4930144	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	19q13.33	19	50873907	KLK2, KLK3, KLKP1, KLK4, KLK15	KLK2			3817			rs2664156-C	rs2664156	0	2664156	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	1q32.1	1	201625537	NAV1	NAV1			89796			rs2068824-C	rs2068824	0	2068824	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	1q32.1	1	202500595	PPP1R12B,  SYT2,  UBE2T	PPP1R12B			4660			rs12734338-C	rs12734338	0	12734338	intron	0	NR	3E-7	6.522878745280337		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	4q23	4	99618739	RG9MTD2, C4orf17, MTTP	MTTP			4547			rs1032355-C	rs1032355	0	1032355	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	3p22.3	3	36368109	STAC	RFC3P1 - STAC	100131711	6769		      197.66	       12.24	rs2605393-G	rs2605393	0	2605393	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [944,512] (Imputed)	N
03/20/2014	23936387	Ostensson M	08/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23936387	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	4p16.2	4	5160662	STK32B	STK32B			55351			rs13128441-C	rs13128441	0	13128441	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [944,512] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	8q24.22	8	133449608	ST3GAL1	ST13P6 - ST3GAL1	157530	6482		       40.08	        5.24	rs10106540-G	rs10106540	0	10106540	Intergenic	1	NR	7E-7	6.154901959985743	(Neuroticism)	    .04	[-0.0188-0.0988] unit increase	Illumina [2,053,685] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	9p24.1	9	8045606	PTPRD	TMEM261 - PTPRD	90871	5789		      245.81	      268.64	rs2146180-G	rs2146180	0	2146180	Intergenic	1	NR	3E-8	7.522878745280337	(Openness)	    .06	[-0.0184-0.1384] unit decrease	Illumina [2,053,685] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	2q34	2	212003899	ERBB4	ERBB4			2066			rs1879637-C	rs1879637	0	1879637	intron	0	NR	4E-6	5.397940008672037	(Openness)	    .10	[-0.0176-0.2176] unit increase	Illumina [2,053,685] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	7q36.2	7	155217003	HTR5A	HTR5A - INSIG1	3361	3638		      129.61	       80.77	rs1561176-G	rs1561176	0	1561176	Intergenic	1	NR	7E-6	5.154901959985742	(Openness)	    .06	[0.0012-0.1188] unit decrease	Illumina [2,053,685] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	17q12	17	34645710	TMEM132E	TMEM132E - CCT6B	124842	10693		        6.39	      282.15	rs4990638-C	rs4990638	0	4990638	Intergenic	1	NR	2E-6	5.698970004336018	(Openness)	    .06	[-0.0184-0.1384] unit decrease	Illumina [2,053,685] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	7p15.3	7	23381148	IGF2BP3	IGF2BP3			10643			rs375092-C	rs375092	0	375092	intron	0	NR	5E-6	5.301029995663981	(Conscientiousness)	    .02	[-0.078-0.118] unit increase	Illumina [2,053,685] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	12p12.3	12	18899246	CAPZA3	CAPZA3 - RPL7P6	93661	90193		      160.06	      189.89	rs1873386-A	rs1873386	0	1873386	Intergenic	1	NR	8E-6	5.096910013008055	(Conscientiousness)	    .03	[-0.0288-0.0888] unit decrease	Illumina [2,053,685] (Imputed)	N
03/05/2014	23903073	Kim HN	08/01/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23903073	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry women	2,090 Korean ancestry individuals	3q13.31	3	114123166	DRD3	QTRTD1 - DRD3	79691	1814		       34.74	        5.54	rs2087017-A	rs2087017	0	2087017	Intergenic	1	NR	6E-6	5.221848749616356	(Agreeableness)	    .05	[-0.0088-0.1088] unit increase	Illumina [2,053,685] (Imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.409	6E-13	12.22184874961636	(FPG)	    .00	[NR] unit decrease	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.409	6E-11	10.22184874961635	(FCP)	    .01	[NR] unit decrease	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	10q22.1	10	69223185	HKDC1, SUPV3L1, SRGN, VPS26A, HK1	HKDC1;LOC101928994			80201;101928994			rs4746822-T	rs4746822	0	4746822	intron;ncRNA	0	0.675	1E-22	22	(2HPG)	    .28	[NR] unit increase	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	21q22.2	21	41211811	BACE2, PLAC4, C21orf130, FAM3B	BACE2			25825			rs6517656-G	rs6517656	0	6517656	intron	0	0.839	6E-16	15.22184874961635	(FCP)	    .04	[NR] unit increase	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-T	rs560887	0	560887	intron	0	0.291	2E-16	15.69897000433602	(FPG)	    .01	[NR] unit decrease	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	5q15	5	96393194	PCSK1	PCSK1;CTD-2337A12.1			5122;101929710			rs6235-G	rs6235	0	6235	missense;intron	0	0.272	5E-15	14.30102999566398	(FPG)	    .01	[NR] unit decrease	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	8p23.1	8	9326086	PPP1R3B	LOC157273			157273			rs4841132-G	rs4841132	0	4841132	ncRNA	0	0.91	5E-15	14.30102999566398	(FCP)	    .03	[NR] unit decrease	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	8p23.1	8	9326086	PPP1R3B	LOC157273			157273			rs4841132-G	rs4841132	0	4841132	ncRNA	0	0.91	3E-13	12.52287874528034	(FPG)	    .01	[NR] unit decrease	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	11q14.3	11	92956866	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      457.91	       12.76	rs7936247-T	rs7936247	0	7936247	Intergenic	1	0.361	3E-16	15.52287874528034	(1HPG)	    .22	[NR] unit increase	Illumina [up to 945,994] (imputed)	N
03/01/2014	23903356	Hayes MG	07/31/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23903356	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean ancestry individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	11q14.3	11	92956866	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      457.91	       12.76	rs7936247-T	rs7936247	0	7936247	Intergenic	1	0.361	2E-12	11.69897000433602	(FPG)	    .00	[NR] unit increase	Illumina [up to 945,994] (imputed)	N
02/25/2014	23921680	Kim DS	07/31/2013	Int Arch Allergy Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23921680	A genome-wide association study in Koreans identifies susceptibility loci for allergic nickel dermatitis.	Allergic dermatitis (nickel)	up to 24 Korean ancestry cases, 52 Korean ancestry controls	NA	12q22	12	95663408	NTN4	NTN4;PGAM1P5			59277;100132594			rs2367563-A	rs2367563	0	2367563	intron;intron	0	NR	4E-6	5.397940008672037		   5.92	[NR] 	Affymetrix [NR]	N
02/25/2014	23921680	Kim DS	07/31/2013	Int Arch Allergy Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23921680	A genome-wide association study in Koreans identifies susceptibility loci for allergic nickel dermatitis.	Allergic dermatitis (nickel)	up to 24 Korean ancestry cases, 52 Korean ancestry controls	NA	2p14	2	64137498	PELI1	PELI1			57162			rs6733160-C	rs6733160	0	6733160	intron	0	NR	7E-6	5.154901959985742	(2-fold positive reaction cases)	   9.28	[NR] 	Affymetrix [NR]	N
02/21/2014	23910658	McRae JF	07/31/2013	Curr Biol	http://www.ncbi.nlm.nih.gov/pubmed/23910658	Identification of regions associated with variation in sensitivity to food-related odors in the human genome.	Odorant perception (β-damascenone)	187 European ancestry individuals	89 European ancestry individuals	11q12.1	11	56128269	OR5BN1P	OR8H3 - OR5BN1P	390152	81204		        4.96	        4.40	rs2220004-?	rs2220004	0	2220004	Intergenic	1	NR	2E-7	6.698970004336019		   5.51	[NR] unit increase	Affymetrix [619,656]	N
03/07/2014	23910658	McRae JF	07/31/2013	Curr Biol	http://www.ncbi.nlm.nih.gov/pubmed/23910658	Identification of regions associated with variation in sensitivity to food-related odors in the human genome.	Odorant perception (β-ionone)	187 European ancestry individuals	Up to 109 Asian ancestry indiviudals	11q12.1	11	59456671	OR4D6	OR4D6			219983			rs7943953-?	rs7943953	0	7943953	nearGene-5	0	NR	1E-31	31		  14.75	[NR] unit decrease	Affymetrix [619,656]	N
02/25/2014	23910658	McRae JF	07/31/2013	Curr Biol	http://www.ncbi.nlm.nih.gov/pubmed/23910658	Identification of regions associated with variation in sensitivity to food-related odors in the human genome.	Odorant perception (isobutyraldehyde)	187 European ancestry individuals	Up to 109 Asian ancestry indiviudals	2q37.3	2	239960704	NDUFA10,OR6B2	NDUFA10			4705			rs13424612-?	rs13424612	0	13424612	intron	0	NR	6E-10	9.221848749616356		   6.62	[NR] unit increase	Affymetrix [619,656]	N
02/18/2014	23935956	Pistis G	07/31/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23935956	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera individuals	619 Friuli Venezia Giulia individuals, 16,145 European ancestry individuals	22q12.3	22	37074184	TMPRSS6	TMPRSS6			164656			rs2413450-T	rs2413450	0	2413450	intron	0	0.46	4E-7	6.397940008672037	(MCH)	    .01	[0.0060-0.0138] unit decrease	Illumina [~2.5 Million] (imputed)	N
02/18/2014	23935956	Pistis G	07/31/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23935956	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera individuals	619 Friuli Venezia Giulia individuals, 16,145 European ancestry individuals	6q23.3	6	135097778	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.35	       83.54	rs7776054-G	rs7776054	0	7776054	Intergenic	1	0.24	4E-6	5.397940008672037	(MCH)	    .01	[0.0060-0.0146] unit increase	Illumina [~2.5 Million] (imputed)	N
02/18/2014	23935956	Pistis G	07/31/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23935956	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera individuals	619 Friuli Venezia Giulia individuals, 16,145 European ancestry individuals	6q23.3	6	135105435	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      126.00	       75.88	rs4895441-G	rs4895441	0	4895441	Intergenic	1	0.26	3E-6	5.522878745280337	(MCV)	    .01	[0.0051-0.0125] unit increase	Illumina [~2.5 Million] (imputed)	N
02/18/2014	23935956	Pistis G	07/31/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23935956	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera individuals	619 Friuli Venezia Giulia individuals, 16,145 European ancestry individuals	22q12.3	22	37074184	TMPRSS6	TMPRSS6			164656			rs2413450-T	rs2413450	0	2413450	intron	0	0.46	9E-6	5.045757490560675	(MCV)	    .01	[0.0044-0.0110] unit decrease	Illumina [~2.5 Million] (imputed)	N
03/02/2014	23900074	Pooley KA	07/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23900074 	A genome-wide association scan (GWAS) for mean telomere length within the COGS project: identified loci show little association with hormone-related cancer risk.	Telomere length	2,240 European ancestry individuals	11,024 breast cancer cases, 15,065 controls	3q26.2	3	169810661	TERC	LRRC34			151827			rs10936601-?	rs10936601	0	10936601	intron	0	0.27	4E-15	14.39794000867204		    .00	[0.00029-0.00051] unit increase	Illumina and Perlegen [2,448,093] (imputed)	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	11q22.3	11	105101791	CARD17,CASP1P1	CARD17			440068			rs11226613-T	rs11226613	0	11226613	nearGene-5	0	0.17	5E-6	5.301029995663981		   1.43	[0.6-0.81] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	18q11.2	18	27107407	CHST9	CHST9			83539			rs9953270-G	rs9953270	0	9953270	intron	0	0.31	3E-6	5.522878745280337		   1.33	[0.66-0.85] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	7p22.3	7	983092	COX19, CYP2W1	CYP2W1			54905			rs12701220-G	rs12701220	0	12701220	intron	0	0.72	3E-6	5.522878745280337	(Hispanic)	   1.54	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	10q21.3	10	65983896	CTNNA3	CTNNA3			29119			rs72791417-A	rs72791417	0	72791417	intron	0	0.16	1E-6	5.999999999999999		   1.45	[0.59-0.8] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	3p14.2	3	61141532	FHIT	FHIT			2272			rs9877396	rs9877396	0	9877396	intron	0	0.28	3E-6	5.522878745280337	(EA)	   2.00	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	8q22.3	8	101583982	GRHL2	GRHL2			79977			rs6988306	rs6988306	0	6988306	intron	0	0.78	3E-6	5.522878745280337	(EA)	   2.78	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	1p34.2	1	41831453	HIVEP3	HIVEP3			59269			rs349423-A	rs349423	0	349423	intron	0	0.03	9E-6	5.045757490560675		   2.52	[1.67-3.79] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	5q12.1	5	63088872	ISCA1L,HTR1A	ISCA1P1 - HTR1A	389293	3350		      311.53	      871.18	rs71627250-A	rs71627250	0	71627250	Intergenic	1	0.1	6E-6	5.221848749616356		   1.65	[1.33-2.04] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	13q22.1	13	73859670	KLF12	KLF12			11278			rs4883955	rs4883955	0	4883955	intron	0	0.72	3E-6	5.522878745280337	(EA)	   2.00	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	11p12	11	38263951	LOC100129825, LOC100289139	RPL7AP56 - RPL18P8	100271536	100129670		      537.46	      897.49	rs10836945-G	rs10836945	0	10836945	Intergenic	1	0.48	8E-6	5.096910013008055	(AA)	   2.17	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	2p24.3	2	12112224	LOC729992,LOC100288243	LOC100506457			100506457			rs17551536-G	rs17551536	0	17551536	intron	0	0.13	5E-6	5.301029995663981		   1.47	[0.58-0.8] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	11p13	11	35517721	PAMR1	PAMR1			25891			rs650950-G	rs650950	0	650950	intron	0	0.29	2E-6	5.698970004336018	(Hispanic)	   1.55	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	10p12.31	10	20145851	PLXDC2	PLXDC2			84898			rs4634985-A	rs4634985	0	4634985	intron	0	0.31	3E-6	5.522878745280337	(Hispanic)	   1.54	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	5q23.1	5	120880342	PRR16,FTMT	PRR16 - RPL23AP44	51334	391825		      193.03	      695.51	rs78975256-G	rs78975256	0	78975256	Intergenic	1	0.02	4E-6	5.397940008672037		   2.44	[0.28-0.6] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	6q24.3	6	147209945	STXBP5	STXBP5			134957			rs2786189-C	rs2786189	0	2786189	intron	0	0.48	5E-6	5.301029995663981	(Hispanic)	   1.47	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	6q24.3	6	147228161	STXBP5,YAP1P1	STXBP5			134957			rs556493-A	rs556493	0	556493	intron	0	0.46	1E-6	5.999999999999999		   1.35	[0.66-0.84] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	3q29	3	195870036	TNK2	TNK2			10188			rs2278034	rs2278034	0	2278034	intron	0	0.52	5E-6	5.301029995663981	(EA)	   1.83	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	1q43	1	243127340	CEP170	CEP170			9859			rs55716084-A	rs55716084	0	55716084	intron	0	0.13	3E-6	5.522878745280337	(Dominant model)	   1.59	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	4q26	4	116954105	NDST4, TRAM1L1	HAVCR1P2 - TRAM1L1	100421002	133022		       95.14	      129.45	rs1440306-A	rs1440306	0	1440306	Intergenic	1	0.75	1E-6	5.999999999999999	(Dominant model)	   1.37	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	5q31.2	5	137567007	SPOCK1,  KLHL3	SPOCK1 - KLHL3	6695	26249		       67.68	       50.49	rs1541364-G	rs1541364	0	1541364	Intergenic	1	0.41	9E-6	5.045757490560675	(Dominant model)	   1.24	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	7q21.11	7	78523355	MAGI2	MAGI2			9863			rs62468577-G	rs62468577	0	62468577	intron	0	0.82	6E-6	5.221848749616356	(Dominant model)	   1.54	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	8q23.3	8	113861151	CSMD3, TRPS1	RPL18P7 - TRPS1	100270945	7227		      483.86	     1547.35	rs1912816-A	rs1912816	0	1912816	Intergenic	1	0.62	6E-6	5.221848749616356	(Dominant model)	   1.28	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	15q14	15	35054340	ZNF770, LOC441722	ZNF770 - NANOGP8	54989	388112		       66.04	       28.89	rs10162694-A	rs10162694	0	10162694	Intergenic	1	0.08	9E-6	5.045757490560675	(Dominant model)	   1.55	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	15q25.1	15	79171505	RASGRF1, LOC729911	RASGRF1 - MIR184	5923	406960		       80.63	       38.28	rs1474256-G	rs1474256	0	1474256	Intergenic	1	0.49	6E-6	5.221848749616356	(Dominant model)	   1.20	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	18q12.1	18	31059582	DSC3, DSC2	DSC3 - DSC2	1825	1824		       16.77	        6.39	rs1126214-G	rs1126214	0	1126214	Intergenic	1	0.41	7E-6	5.154901959985742	(Dominant model)	   1.25	[NR] 	Illumina [1,795,103]	N
02/08/2014	23897914	Wang H	07/29/2013	Pediatrics	http://www.ncbi.nlm.nih.gov/pubmed/23897914	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn control, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	19p12	19	22873544	LOC646864, ZNF728	VN1R88P - VN1R89P	100312833	100312834		       11.94	       96.98	rs7246967-C	rs7246967	0	7246967	Intergenic	1	0.16	4E-6	5.397940008672037	(Dominant model)	   1.40	[NR] 	Illumina [1,795,103]	N
02/25/2014	23894154	Kohler A	07/26/2013	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/23894154 	Genome-wide association study on differentiated thyroid cancer.	Thyroid cancer	690 European ancestry cases, 497 European ancestry controls	2,958 European ancestry cases, 3,727 European ancestry controls	2q35	2	217406996	DIRC3	DIRC3			729582			rs6759952-T	rs6759952	0	6759952	intron	0	0.43	6E-10	9.221848749616356		   1.25	[1.16-1.34] 	Illumina [572,042]	N
02/25/2014	23894154	Kohler A	07/26/2013	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/23894154 	Genome-wide association study on differentiated thyroid cancer.	Thyroid cancer	690 European ancestry cases, 497 European ancestry controls	2,958 European ancestry cases, 3,727 European ancestry controls	9q22.33	9	97793827	FOXE1	KRT18P13 - FOXE1	392371	2304		       93.03	       59.43	rs965513-A	rs965513	0	965513	Intergenic	1	NR	3E-10	9.522878745280336		   1.78	[NR] 	Illumina [572,042]	N
02/25/2014	23935489	McLaren PJ	07/25/2013	PLoS Pathog	http://www.ncbi.nlm.nih.gov/pubmed/23935489	Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls.	HIV-1 susceptibility	6,334 European ancestry cases, 7,247 European ancestry controls	NR	6p21.33	6	31423624	HLA-B, HLA-C	TRNAI25			100189401			rs4418214-C	rs4418214	0	4418214		0	NR	4E-11	10.39794000867204		   1.52	 	Illumina & Affymetrix [~8 million] Imputed	N
02/11/2014	23886662	Weidinger S	07/25/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23886662 	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	5q31.1	5	132660151	IL13, RAD50	IL13			3596			rs1295686-A	rs1295686	0	1295686	intron	0	NR	2E-17	16.69897000433602		   1.38	[1.283-1.49] 	Illumina [2,406,139] (Imputed)	N
02/11/2014	23886662	Weidinger S	07/25/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23886662 	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	6p21.33	6	32107027	CREBL1, TNXB, 	TNXB			7148			rs12153855-T	rs12153855	0	12153855	intron	0	NR	3E-14	13.52287874528034		   1.58	[1.405-1.779] 	Illumina [2,406,139] (Imputed)	N
02/11/2014	23886662	Weidinger S	07/25/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23886662 	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	11q13.5	11	76559639	C11orf30,LRRC32	C11orf30 - LRRC32	56946	2615		        6.74	       97.89	rs7130588-G	rs7130588	0	7130588	Intergenic	1	NR	4E-13	12.39794000867204		   1.29	[1.2-1.38] 	Illumina [2,406,139] (Imputed)	N
02/11/2014	23886662	Weidinger S	07/25/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23886662 	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	1q21.3	1	152469813	FLG	CRNN - LCE5A	49860	254910		       55.54	       41.03	rs6661961-T	rs6661961	0	6661961	Intergenic	1	NR	9E-11	10.04575749056067		    .34	[0.24-0.44] unit increase	Illumina [2,406,139] (Imputed)	N
02/05/2014	23875689	Hong SN	07/22/2013	J Gastroenterol Hepatol	http://www.ncbi.nlm.nih.gov/pubmed/23875689 	Colorectal Cancer-Susceptibility Single Nucleotide Polymorphisms in Korean Population.	Colorectal cancer	105 Korean ancestry cases	189 Korean ancestry cases, 190 Korean ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
01/22/2014	23872634	Bezzina CR	07/21/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23872634 	Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death.	Brugada syndrome	312 European ancestry cases, 1,115 European ancestry controls	594 European ancestry cases, 806 European ancestry controls, 208 Japanese ancestry cases, 1,1016 Japanese controls	3p22.2	3	38592432	SCN5A	SCN5A			6331			rs11708996-C	rs11708996	0	11708996	intron	0	0.15	1E-14	14		   1.73	[1.51-1.99] 	Affymetrix [360,149]	N
01/22/2014	23872634	Bezzina CR	07/21/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23872634 	Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death.	Brugada syndrome	312 European ancestry cases, 1,115 European ancestry controls	594 European ancestry cases, 806 European ancestry controls, 208 Japanese ancestry cases, 1,1016 Japanese controls	3p22.2	3	38736063	SCN10A	SCN10A			6336			rs10428132-T	rs10428132	0	10428132	intron	0	0.41	1E-68	68		   2.55	[2.30-2.84] 	Affymetrix [360,149]	N
01/22/2014	23872634	Bezzina CR	07/21/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23872634 	Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death.	Brugada syndrome	312 European ancestry cases, 1,115 European ancestry controls	594 European ancestry cases, 806 European ancestry controls, 208 Japanese ancestry cases, 1,1016 Japanese controls	6q22.31	6	125769231	HEY2, NCOA7	HEY2 - TRNAE19	23493	100189269		        7.96	       11.02	rs9388451-C	rs9388451	0	9388451	Intergenic	1	0.50	5E-17	16.30102999566398		   1.58	[1.42-1.75] 	Affymetrix [360,149]	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	15q25.3	15	87434245	AGBL1	LOC102724465			102724465			rs2679073-A	rs2679073	0	2679073	intron	0	0.99	4E-6	5.397940008672037	(AA)	   1.50	[0.85-2.15] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6q23.2	6	134773134	ALDH8A1	FAM8A6P - MEMO1P2	114182	645175		      168.90	      124.70	rs11760067-T	rs11760067	0	11760067	Intergenic	1	0.02	7E-6	5.154901959985742	(AA)	    .80	[0.45-1.15] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	14q32.12	14	92070615	ATXN3	ATXN3			4287			rs12588287-T	rs12588287	0	12588287	intron	0	0.83	9E-6	5.045757490560675	(AA)	    .19	[0.11-0.27] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	10q24.32	10	101938948	C10orf76	C10orf76			79591			rs34014631-A	rs34014631	0	34014631	intron	0	0.06	4E-6	5.397940008672037	(AA)	    .47	[0.27-0.67] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2q37.3	2	242084344	C2orf85	FLJ38379 - CICP10	285097	100462787		       78.33	       35.53	rs749924-T	rs749924	0	749924	Intergenic	1	0.5	1E-7	7	(AA)	    .19	[0.11-0.27] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6q25.2	6	153756058	C6orf10	MTND4P13 - HMGB3P19	100862853	729635		       86.23	      182.40	rs1937579-T	rs1937579	0	1937579	Intergenic	1	0.85	3E-6	5.522878745280337	(AA)	    .19	[0.11-0.27] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	1q25.3	1	181457774	CACNA1E	GM140 - CACNA1E	100287948	777		      219.17	       25.78	rs2332267-T	rs2332267	0	2332267	Intergenic	1	0.05	8E-6	5.096910013008055	(AA)	    .42	[0.24-0.6] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	3p14.3	3	55150186	CACNA2D3	LRTM1 - WNT5A	57408	7474		      183.10	      315.53	rs6782380-C	rs6782380	0	6782380	Intergenic	1	0.8	8E-6	5.096910013008055	(AA)	    .18	[0.1-0.26] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12q21.2	12	75324643	CAPS2	CAPS2			84698			rs12318506-T	rs12318506	0	12318506	intron	0	0.18	8E-6	5.096910013008055	(AA)	    .21	[0.11-0.31] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	22q12.2	22	30355638	CCDC157	SF3A1;CCDC157			10291;550631			rs4820834-A	rs4820834	0	4820834	intron;nearGene-5	0	0.02	9E-6	5.045757490560675	(AA)	    .71	[0.4-1.02] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	5p14.1	5	26927958	CDH9	CDH9			1007			rs10057565-T	rs10057565	0	10057565	intron	0	0.83	8E-6	5.096910013008055	(AA)	    .20	[0.12-0.28] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6p24.3	6	8228709	EEF1E1	SCARNA27 - SLC35B3	100124533	51000		      142.18	      184.36	rs6929568-T	rs6929568	0	6929568	Intergenic	1	0.49	3E-6	5.522878745280337	(AA)	    .17	[0.092-0.248] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12p13.1	12	13299846	EMP1	EMP1 - C12orf36	2012	283422		       83.07	       70.83	rs899435-A	rs899435	0	899435	Intergenic	1	0.56	9E-6	5.045757490560675	(AA)	    .15	[0.091-0.209] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2p25.2	2	5912619	ERBB4	SOX11 - LINC01105	6664	150622		      211.23	       20.07	rs7586540-A	rs7586540	0	7586540	Intergenic	1	0.94	5E-6	5.301029995663981	(AA)	    .43	[0.25-0.61] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	18q22.3	18	73808898	FBXO15	MIR548AV - FBXO15	100847083	201456		      955.52	      264.35	rs17088339-A	rs17088339	0	17088339	Intergenic	1	0.02	6E-6	5.221848749616356	(AA)	    .68	[0.39-0.97] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	11p13	11	33785276	FBXO3	FBXO3 - LMO2	26273	4005		       10.75	       73.30	rs11825259-A	rs11825259	0	11825259	Intergenic	1	0.88	4E-6	5.397940008672037	(AA)	    .21	[0.11-0.31] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8q24.3	8	141456721	FLJ43860	MROH5			389690			rs11777747-T	rs11777747	0	11777747	intron	0	0.03	8E-6	5.096910013008055	(AA)	    .68	[0.39-0.97] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	NR			GRIN3A	 - 						rs104623359-A	rs104623359					0.23	3E-6		(AA)	    .19	[0.11-0.27] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	13q12.11	13	20557072	IFT88	MIR4499 - IFT88	100616304	8100		      123.23	        9.37	rs9506514-A	rs9506514	0	9506514	Intergenic	1	0.53	5E-6	5.301029995663981	(AA)	    .17	[0.092-0.248] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	10q21.1	10	57964628	IPMK	MIR3924 - MRPS35P3	100500834	359779		      660.07	       17.85	rs7070038-A	rs7070038	0	7070038	Intergenic	1	0.11	7E-6	5.154901959985742	(AA)	    .21	[0.11-0.31] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	14q32.11	14	90149169	KCNK13	KCNK13			56659			rs4900022-A	rs4900022	0	4900022	intron	0	0.93	4E-6	5.397940008672037	(AA)	    .45	[0.25-0.65] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8q24.22	8	132356847	KCNQ3	KCNQ3			3786			rs978152-C	rs978152	0	978152	intron	0	0.25	8E-6	5.096910013008055	(AA)	    .19	[0.11-0.27] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	10p15.2	10	3496602	KLF6	PITRM1-AS1 - KLF6	100507034	1316		      347.97	      279.39	rs7092929-A	rs7092929	0	7092929	Intergenic	1	0.26	3E-7	6.522878745280337	(AA)	    .21	[0.13-0.29] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	22q12.3	22	34206199	LARGE	LARGE-AS1 - ISX	100506195	91464		      455.38	      859.94	rs5754891-A	rs5754891	0	5754891	Intergenic	1	0.7	7E-6	5.154901959985742	(AA)	    .16	[0.082-0.238] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6q21	6	113344125	LOC100652953	SOCS5P5 - RPS27AP11	643884	728590		      120.06	      237.34	rs7765175-T	rs7765175	0	7765175	Intergenic	1	0.14	5E-6	5.301029995663981	(AA)	    .21	[0.11-0.31] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	3q23	3	141657298	LOC646730	YWHAQP6 - TPT1P3	101290504	100421439		       56.61	       51.71	rs11921014-A	rs11921014	0	11921014	Intergenic	1	0.02	8E-6	5.096910013008055	(AA)	   1.07	[0.6-1.54] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12p13.2	12	12223531	LRP6	LRP6			4040			rs11054731-A	rs11054731	0	11054731	intron	0	0.89	6E-6	5.221848749616356	(AA)	    .21	[0.11-0.31] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	15q26.3	15	99757458	LYSMD4	LYSMD4 - DNM1P46	145748	196968		       24.01	       32.70	rs1993293-A	rs1993293	0	1993293	Intergenic	1	0.73	4E-6	5.397940008672037	(AA)	    .17	[0.092-0.248] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	18q12.1	18	31756628	MCART2	LRRC37A7P - SLC25A52	100421589	147407		       30.94	        3.07	rs10502575-A	rs10502575	0	10502575	Intergenic	1	0.83	1E-7	7	(AA)	    .22	[0.14-0.3] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	17q22	17	57670055	MSI2	MSI2			124540			rs11079321-A	rs11079321	0	11079321	intron	0	0.28	8E-6	5.096910013008055	(AA)	    .16	[0.082-0.238] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	6p24.3	6	8000884	MUTED	BLOC1S5-TXNDC5			100526836			rs9328448-A	rs9328448	0	9328448	intron	0	0.75	3E-6	5.522878745280337	(AA)	    .17	[0.092-0.248] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8p12	8	31936593	NRG1	NRG1			3084			rs1462872-A	rs1462872	0	1462872	intron	0	0.56	9E-6	5.045757490560675	(AA)	    .16	[0.082-0.238] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	1q43	1	242111606	PLD5	PLD5			200150			rs10803016-T	rs10803016	0	10803016	intron	0	0.52	7E-6	5.154901959985742	(AA)	    .16	[0.082-0.238] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	3p14.1	3	64306961	PRICKLE2	PRICKLE2-AS3 - ADAMTS9	100874243	56999		      105.40	      208.69	rs741013-A	rs741013	0	741013	Intergenic	1	0.98	5E-7	6.30102999566398	(AA)	    .97	[0.6-1.34] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	17q24.2	17	66521195	PRKCA	PRKCA			5578			rs11651708-A	rs11651708	0	11651708	intron	0	0.33	3E-6	5.522878745280337	(AA)	    .16	[0.1-0.22] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	1q31.2	1	192837111	RGS2	RGS2 - ZNF101P2	5997	730190		       24.83	      156.31	rs7550636-T	rs7550636	0	7550636	Intergenic	1	0.88	4E-6	5.397940008672037	(AA)	    .25	[0.13-0.37] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	18q12.3	18	42479656	RIT2	LINC00907			284260			rs16976171-T	rs16976171	0	16976171	intron	0	0.11	4E-6	5.397940008672037	(AA)	    .20	[0.12-0.28] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	15q21.1	15	47713273	SEMA6D	SEMA6D			80031			rs8028579-T	rs8028579	0	8028579	intron	0	0.11	7E-6	5.154901959985742	(AA)	    .30	[0.16-0.44] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	9p24.2	9	4555305	SLC1A1	SLC1A1;SPATA6L			6505;55064			rs7856675-A	rs7856675	0	7856675	intron;intron	0	0.82	8E-6	5.096910013008055	(AA)	    .22	[0.12-0.32] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12p12.1	12	22413495	SLC2A13	ST8SIA1 - C2CD5	6489	9847		       78.78	       35.05	rs11046430-T	rs11046430	0	11046430	Intergenic	1	0.12	4E-6	5.397940008672037	(AA)	    .21	[0.13-0.29] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	4p16.1	4	7157975	SORCS2	FLJ36777 - SORCS2	730971	57537		       54.60	       34.67	rs3894944-A	rs3894944	0	3894944	Intergenic	1	0.77	3E-6	5.522878745280337	(AA)	    .18	[0.1-0.26] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	17q24.3	17	71493932	SOX9	CASC17 - LINC01152	101928165	102606463		      291.75	      536.72	rs9907236-A	rs9907236	0	9907236	Intergenic	1	0.06	2E-6	5.698970004336018	(AA)	    .51	[0.29-0.73] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	14q31.3	14	88360138	SPATA7	KCNK10 - SPATA7	54207	55812		       33.23	       25.51	rs17772222-A	rs17772222	0	17772222	Intergenic	1	0.81	3E-6	5.522878745280337	(AA)	    .21	[0.13-0.29] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	7q21.13	7	90134550	STEAP1	STEAP2-AS1			100874100			rs10266254-A	rs10266254	0	10266254	intron	0	0.96	6E-6	5.221848749616356	(AA)	    .61	[0.34-0.88] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2p11.2	2	84482091	SUCLG1	SUCLG1 - DNAH6	8802	1768		       22.63	       34.36	rs7581224-T	rs7581224	0	7581224	Intergenic	1	0.14	2E-6	5.698970004336018	(AA)	    .20	[0.12-0.28] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2q14.3	2	127745011	WDR33	WDR33			55339			rs17015535-A	rs17015535	0	17015535	intron	0	0.91	6E-6	5.221848749616356	(AA)	    .38	[0.2-0.56] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	8q23.1	8	105497747	ZFPM2	ZFPM2			23414			rs2622633-A	rs2622633	0	2622633	intron	0	0.21	6E-6	5.221848749616356	(AA)	    .20	[0.1-0.3] unit increase	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/06/2014	23870195	Wojczynski MK	07/19/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23870195 	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	19q13.12	19	37256206	ZNF383	LOC101927667			101927667			rs7246657-T	rs7246657	0	7246657	ncRNA	0	0.53	7E-6	5.154901959985742	(AA)	    .16	[0.082-0.238] unit decrease	Affymetrix & Illumina [up to 2,727,966] (imputed)	N
02/08/2014	23871474	Psychosis Endophenotypes International Consortium and the Wellcome Trust Case-Control Consortium	07/17/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23871474 	A Genome-wide Association Analysis of a Broad Psychosis Phenotype Identifies Three Loci for Further Investigation.	Psychosis	1,239 European ancestry cases, 3,596 European ancestry control	10,352 cases, 24,474 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [695,193]	N
02/04/2014	23857890	Power RA	07/15/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23857890 	Genome-wide association analysis accounting for environmental factors through propensity-score matching: application to stressful live events in major depressive disorder.	Major depressive disorder	805 European ancestry cases, 805 European ancestry controls	NR	16q24.1	16	86070536	IRF8	MIR6774 - LINC01082	102466732	100506542		      152.12	      125.65	rs8050326-A	rs8050326	0	8050326	Intergenic	1	0.44	3E-7	6.522878745280337		   1.45	[1.26-1.76] 	Illumina [457,670]	N
02/04/2014	23857890	Power RA	07/15/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23857890 	Genome-wide association analysis accounting for environmental factors through propensity-score matching: application to stressful live events in major depressive disorder.	Major depressive disorder	805 European ancestry cases, 805 European ancestry controls	NR	18q21.32	18	59647575	CCBE1	CCBE1			147372			rs11152166-?	rs11152166	0	11152166	intron	0	0.58	3E-6	5.522878745280337		   1.41	[1.22-1.61] 	Illumina [457,670]	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	1p31.3	1	67182913	IL23R	IL23R			149233			rs76418789-G	rs76418789	0	76418789	missense	0	0.931	2E-10	9.698970004336017		   2.06	[1.64-2.58] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	4p14	4	38323415	TBC1D1,KLF3	MRPS33P2 - LINC01258	359775	101928776		      316.31	       97.25	rs6856616-C	rs6856616	0	6856616	Intergenic	1	0.23	4E-14	13.39794000867204		   1.43	[1.31-1.57] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	6	32405455	HLA-DRB5,HLA-DQA1,HLA-DRB1,HLA-DRA,BTNL2	BTNL2;LOC101929163			56244;101929163;102725030			rs10947261-T	rs10947261	0	10947261	intron;ncRNA;ncRNA	0	0.294	3E-12	11.52287874528034		   1.36	[1.25-1.49] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.31	6	33796256	ITPR3, MIF1, IP6K3, LEMD2, MLN	MLN			4295			rs751728-T	rs751728	0	751728	intron	0	0.733	1E-8	8		   1.32	[1.20-1.45] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6q27	6	166957622	RNASET2, FGFR1OP, CCR6, MIR3939	RNASET2			8635			rs2149085-T	rs2149085	0	2149085	nearGene-5	0	0.379	8E-12	11.09691001300806		   1.34	[1.23-1.45] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	10q25.2	10	110426390	SMNDC1,DUSP5,RP11-525A16.1	SMNDC1 - HMGB3P5	10285	645360		      121.44	       24.24	rs11195128-T	rs11195128	0	11195128	Intergenic	1	0.152	2E-10	9.698970004336017		   1.42	[1.28-1.58] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	11q13.4	11	73152652	STARD10, ATG16L2, FCHSD2	RPL15P16 - P2RY2	100127949	5029		      211.54	       65.02	rs11235667-G	rs11235667	0	11235667	Intergenic	1	0.096	7E-9	8.154901959985743		   1.46	[1.28-1.65] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23850713	Yang SK	07/14/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23850713	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	6p21.32	6	32619077	HLA-DRB5,HLA-DQA1,HLA-DRB1,HLA-DRA,BTNL2	TRNAI25			100189401			rs9271366-A	rs9271366	0	9271366		0	0.888	5E-12	11.30102999566398		   1.66	[1.44-1.92] 	Illumina [5,664,371] (imputed)	N
02/04/2014	23853074	Meder B	07/12/2013	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/23853074 	A genome-wide association study identifies 6p21 as novel risk locus for dilated cardiomyopathy.	Dilated cardiomyopathy	909 European ancestry cases, 2,120 European ancestry controls	3,234 European ancestry cases, 5,590 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [292,367]	N
02/04/2014	23874384	Viding E	07/09/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23874384 	Genetics of callous-unemotional behavior in children.	Callous-unemotional behaviour	2,930 European ancestry children	NR	9q22.33	9	99356808	SEC61B, ALG2, TGFBR1	NAMA			100996569			rs12551906-G	rs12551906	0	12551906	intron	0	0.689	3E-6	5.522878745280337		NR	NR	Affymetrix [1,724,317] (Imputed)	N
02/04/2014	23874384	Viding E	07/09/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23874384 	Genetics of callous-unemotional behavior in children.	Callous-unemotional behaviour	2,930 European ancestry children	NR	3p26.2	3	3587297	LRRN1	CRBN - SUMF1	51185	285362		      407.58	      195.21	rs10865864-G	rs10865864	0	10865864	Intergenic	1	0.197	4E-6	5.397940008672037		NR	NR	Affymetrix [1,724,317] (Imputed)	N
02/04/2014	23874384	Viding E	07/09/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23874384 	Genetics of callous-unemotional behavior in children.	Callous-unemotional behaviour	2,930 European ancestry children	NR	5q11.1	5	50937365	PARP8	PARP8 - RPS10P12	79668	133569		       90.84	      337.85	rs151997-T	rs151997	0	151997	Intergenic	1	0.382	5E-6	5.301029995663981		NR	NR	Affymetrix [1,724,317] (Imputed)	N
02/12/2014	23834954	Kobayashi D	07/08/2013	Mol Pain	http://www.ncbi.nlm.nih.gov/pubmed/23834954 	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	1p13.3	1	109862649	CSF1	EPS8L3 - CSF1	79574	1435		       98.63	       47.96	rs6537883-?	rs6537883	0	6537883	Intergenic	1	NR	3E-6	5.522878745280337	(Hypoesthesia, Dominant)	NR	NR	Illumina [243,229]	N
02/12/2014	23834954	Kobayashi D	07/08/2013	Mol Pain	http://www.ncbi.nlm.nih.gov/pubmed/23834954 	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	6q25.3	6	156591878	ARID1B	TRNAV37P - ARID1B	100189513	57492		       43.89	      185.97	rs2817461-?	rs2817461	0	2817461	Intergenic	1	NR	4E-8	7.397940008672037	(Hypoesthesia, Recessive)	NR	NR	Illumina [243,229]	N
02/12/2014	23834954	Kobayashi D	07/08/2013	Mol Pain	http://www.ncbi.nlm.nih.gov/pubmed/23834954 	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	3q12.3	3	102484201	ARID1B, ZPLD1	ZPLD1 - NDUFA4P2	131368	100287880		        4.36	      756.79	rs2063640-?	rs2063640	0	2063640	Intergenic	1	NR	2E-6	5.698970004336018	(Hypoesthesia, Recessive)	NR	NR	Illumina [243,229]	N
02/12/2014	23834954	Kobayashi D	07/08/2013	Mol Pain	http://www.ncbi.nlm.nih.gov/pubmed/23834954 	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	7p21.1	7	17278688	LOC729939	RAD17P1 - AHR	9207	196		      412.32	       19.96	rs13236243-?	rs13236243	0	13236243	Intergenic	1	NR	4E-6	5.397940008672037	(Hypoesthesia, Recessive)	NR	NR	Illumina [243,229]	N
02/12/2014	23834954	Kobayashi D	07/08/2013	Mol Pain	http://www.ncbi.nlm.nih.gov/pubmed/23834954 	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	12p13.2	12	10017562	CLEC12B	CLEC12B;LOC102724020			387837;102724020			rs1054611-?	rs1054611	0	1054611	intron;intron	0	NR	6E-6	5.221848749616356	(Hypoesthesia, Recessive)	NR	NR	Illumina [243,229]	N
02/12/2014	23834954	Kobayashi D	07/08/2013	Mol Pain	http://www.ncbi.nlm.nih.gov/pubmed/23834954 	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	4p16.2	4	5108413	STK32B	STK32B			55351			rs6833812-?	rs6833812	0	6833812	intron	0	NR	7E-6	5.154901959985742	(Hypoesthesia, Recessive)	NR	NR	Illumina [243,229]	N
02/12/2014	23834954	Kobayashi D	07/08/2013	Mol Pain	http://www.ncbi.nlm.nih.gov/pubmed/23834954 	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	12q13.3	12	57095926	STAT6	NAB2;STAT6			4665;6778			rs1059513-?	rs1059513	0	1059513	nearGene-3;ncRNA	0	NR	7E-6	5.154901959985742	(Hypoesthesia, Recessive)	NR	NR	Illumina [243,229]	N
02/06/2014	23838604	Pare G	07/08/2013	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23838604 	Genetic variants associated with angiotensin-converting enzyme inhibitor-associated angioedema.	Angioedema in response to angiotensin-converting enzyme inhibitor	175 ACE inhibitor-associated angioedema cases, 489 ACE inhibitor-exposed controls	19 ACE inhibitor-associated angioedema cases, 57 ACE inhibitor-exposed controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [579,344]	N
02/05/2014	23836780	The Blue Mountains Eye Study (BMES) and The Wellcome Trust Case Control Consortium 2 (WTCCC2)	07/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23836780 	Genome-wide association study of intraocular pressure identifies the GLCCI1/ICA1 region as a glaucoma susceptibility locus.	Intraocular pressure	2,175 European ancestry individuals	4,866 European ancestry individuals	7p21.3	7	8112437	ICA1, GLCCI1	GLCCI1 - ICA1	113263	3382		       23.36	         .75	rs59072263-G	rs59072263	0	59072263	Intergenic	1	0.88	1E-8	8		    .45	[0.29-0.61] unit increase	Illumina [6,235,970]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	9p23	9	12521826	Intergenic	JKAMPP1 - TYRP1	100049717	7306		      232.59	      171.56	rs16929097-?	rs16929097	0	16929097	Intergenic	1	NR	8E-9	8.096910013008056		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	1p13.1	1	116587089	IGSF3	IGSF3			3321			rs17036023-?	rs17036023	0	17036023	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	10q24.2	10	99095945	HPSE2	HPSE2			60495			rs12570188-?	rs12570188	0	12570188	intron	0	NR	5E-8	7.30102999566398		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	10q22.1	10	71831773	PSAP	PSAP			5660			rs11000019-?	rs11000019	0	11000019	intron	0	NR	8E-8	7.096910013008055		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	20p12.3	20	7405311	Intergenic	MIR8062 - SRSF10P2	102465865	171472		       33.62	      426.39	rs6054973-?	rs6054973	0	6054973	Intergenic	1	NR	1E-7	7		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3q13.2	3	112550440	ATG3	ATG3			64422			rs2705520-?	rs2705520	0	2705520	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3p22.3	3	35598334	Intergenic	LOC100130503			100130503			rs17033506-?	rs17033506	0	17033506		0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	6p21.1	6	44801500	Intergenic	TRNAI25			100189401			rs7770848-?	rs7770848	0	7770848		0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	2p22.1	2	39888556	Intergenic	THUMPD2 - SLC8A1-AS1	80745	100128590		      109.28	       29.08	rs6721181-?	rs6721181	0	6721181	Intergenic	1	NR	6E-7	6.221848749616355		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	9q21.33	9	86912543	Intergenic	RPS6P13 - GAS1	392358	2619		      536.80	       31.82	rs11141597-?	rs11141597	0	11141597	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	7p15.3	7	24200546	Intergenic	RNA5SP228 - NPY	100873486	4852		       67.71	       83.64	rs886448-?	rs886448	0	886448	Intergenic	1	NR	7E-8	7.154901959985742		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	7q32.3	7	131336340	MKLN1	MKLN1			4289			rs7807274-?	rs7807274	0	7807274	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	1q25.3	1	180676305	XPR1	XPR1			9213			rs7527074-?	rs7527074	0	7527074	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3q26.32	3	178137844	Intergenic	FGFR3P4 - LINC01014	100420833	100874330		      436.77	      281.36	rs9883878-?	rs9883878	0	9883878	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	4q12	4	58347679	Intergenic	SRIP1 - MIR548AG1	6644	100616450		      244.05	     2574.94	rs17218161-?	rs17218161	0	17218161	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	8p12	8	34187743	Intergenic	CYCSP3 - RPL10AP3	349198	137107		      217.87	      135.22	rs9297216-?	rs9297216	0	9297216	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3q12.2	3	100757869	ABI3BP	ABI3BP			25890			rs9823506-?	rs9823506	0	9823506	intron	0	NR	6E-8	7.221848749616355		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	4p14	4	39086721	KLHL5	KLHL5			51088			rs35141484-?	rs35141484	0	35141484	cds-synon	0	NR	3E-7	6.522878745280337		NR	NR	Affymetrix [786,195]	N
02/06/2014	23829686	Ding L	07/05/2013	Hum Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23829686 	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	6q21	6	113158133	Intergenic	PA2G4P5 - SOCS5P5	389424	643884		      540.10	       64.03	rs2473967-?	rs2473967	0	2473967	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [786,195]	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	1p36.22	1	11796321	MTHFR	MTHFR			4524			rs1801133-A	rs1801133	0	1801133	missense	0	0.34	4E-104	103.397940008672		    .16	[0.14-0.17] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	1q43	1	236885376	MTR	MTR			4548			rs2275565-T	rs2275565	0	2275565	intron	0	0.21	2E-10	9.698970004336017		    .05	[0.037-0.072] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	2q34	2	210675783	CPS1	CPS1			1373			rs7422339-A	rs7422339	1	1047891	missense	0	0.33	5E-27	26.30102999566398		    .09	[0.071-0.102] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	6p12.3	6	49414480	MUT	TRNAI25			100189401			rs9369898-A	rs9369898	0	9369898		0	0.62	2E-10	9.698970004336017		    .04	[0.031-0.059] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	11q14.3	11	89415204	NOX4	NOX4			50507			rs7130284-T	rs7130284	0	7130284	intron	0	0.07	2E-20	19.69897000433602		    .12	[0.099-0.15] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	16q24.3	16	89641688	DPEP1	DPEP1 - CHMP1A	1800	5119		         .88	        2.74	rs154657-A	rs154657	0	154657	Intergenic	1	0.47	2E-43	42.69897000433601		    .10	[0.083-0.11] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	21q22.3	21	43066854	CBS	CBS			875			rs234709-T	rs234709	0	234709	intron	0	0.45	4E-24	23.39794000867204		    .07	[0.058-0.086] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	1p34.1	1	45513003	MMACHC	PRDX1			5052			rs4660306-T	rs4660306	0	4660306	intron	0	0.33	2E-9	8.698970004336019		    .04	[0.03-0.057] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	6p22.2	6	25869143	SLC17A3	SLC17A3			10786			rs548987-C	rs548987	0	548987	intron	0	0.13	1E-8	8		    .06	[0.04-0.079] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	7q21.13	7	90348446	GTPB10	GTPBP10			85865			rs42648-A	rs42648	0	42648	intron	0	0.4	2E-8	7.698970004336018		    .04	[0.026-0.053] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	10p13	10	17114152	CUBN	CUBN			8029			rs1801222-A	rs1801222	0	1801222	missense	0	0.34	8E-10	9.096910013008054		    .05	[0.032-0.059] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	12q24.31	12	120967323	HNF1A	RPL12P33 - HNF1A-AS1	643550	283460		       50.04	        2.52	rs2251468-A	rs2251468	0	2251468	Intergenic	1	0.65	1E-12	12		    .05	[0.037-0.065] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	19q13.33	19	48756272	FUT2	FUT1;FGF21			2523;26291			rs838133-A	rs838133	0	838133	nearGene-5;cds-synon	0	0.45	7E-9	8.154901959985743		    .04	[0.028-0.056] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	1p36.22	1	11778589	MTHFR	C1orf167;LOC102724659			284498;102724659			rs12134663-A	rs12134663	0	12134663	intron;intron	0	0.8	3E-21	20.52287874528034		    .10	[0.079-0.123] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	10p13	10	17181245	CUBN	TRDMT1			1787			rs12780845-A	rs12780845	0	12780845	intron	0	0.65	8E-10	9.096910013008054		    .05	[0.035-0.071] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	11q14.3	11	89468459	NOX4	NOX4			50507			rs957140-A	rs957140	0	957140	intron	0	0.45	2E-8	7.698970004336018		    .05	[0.029-0.061] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	16q24.3	16	89793345	DPEP1, FANCA	FANCA			2175			rs12921383-T	rs12921383	0	12921383	intron	0	0.87	8E-11	10.09691001300805		    .09	[0.063-0.117] unit decrease	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/31/2014	23824729	van Meurs JB	07/03/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23824729 	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NR	21q22.3	21	43067294	CBS	CBS			875			rs2851391-T	rs2851391	0	2851391	intron	0	0.47	2E-12	11.69897000433602		    .06	[0.04-0.072] unit increase	Affymetrix & Illumina [2,090,256] (Imputed)	N
01/10/2014	23844046	Dorajoo R	07/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23844046 	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NR	19q13.32	19	44892362	APOE	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	0.122	2E-21	20.69897000433602		    .12	[NR] unit increase	Illumina [Up to 1,745,429] (Imputed)	N
01/10/2014	23844046	Dorajoo R	07/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23844046 	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NR	1q23.2	1	159706381	CRP	CRPP1 - CRP	171422	1401		         .79	        5.91	rs16842559-T	rs16842559	0	16842559	Intergenic	1	0.887	4E-21	20.39794000867204		    .11	[NR] unit increase	Illumina [Up to 1,745,429] (Imputed)	N
01/10/2014	23844046	Dorajoo R	07/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23844046 	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NR	12q24.31	12	120983004	HNF1A	HNF1A			6927			rs1183910-G	rs1183910	0	1183910	intron	0	0.709	4E-12	11.39794000867204		    .05	[NR] unit increase	Illumina [Up to 1,745,429] (Imputed)	N
01/10/2014	23844046	Dorajoo R	07/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23844046 	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NR	1p31.3	1	65620511	LEPR	LEPR			3953			rs10889569-T	rs10889569	0	10889569	intron	0	0.778	9E-9	8.045757490560675		    .05	[NR] unit increase	Illumina [Up to 1,745,429] (Imputed)	N
01/10/2014	23827383	Cadby G	07/01/2013	Lung Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23827383 	A genome-wide association study for malignant mesothelioma risk.	Malignant mesothelioma	428 European ancestry cases, 2,047 European ancestry controls	392 European ancestry cases, 367 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,508,203] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	11q13.5	11	76588150	C11orf30, LRRC32	C11orf30 - LRRC32	56946	2615		       35.25	       69.37	rs2155219-T	rs2155219	0	2155219	Intergenic	1	0.47	1E-18	18		   1.18	[1.13-1.22] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	12q13.3	12	57095926	STAT6	NAB2;STAT6			4665;6778			rs1059513-T	rs1059513	0	1059513	nearGene-3;ncRNA	0	0.9	1E-14	14		   1.30	[1.21-1.39] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	5q22.1	5	110854353	SLC25A46, TSLP, WDR36, CAMK4	SLC25A46 - TSLP	91137	85480		       89.20	      215.73	rs10056340-G	rs10056340	0	10056340	Intergenic	1	0.17	5E-14	13.30102999566398		   1.20	[1.15-1.28] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.32	6	32658534	HLA-DQB1, HLA-DQA1, 	TRNAI25			100189401			rs6906021-C	rs6906021	0	6906021		0	0.45	2E-12	11.69897000433602		   1.15	[1.11-1.2] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	2q12.1	2	102343750	IL1RL1, IL18R1, IL18RAP	IL1RL1			9173			rs3771175-T	rs3771175	0	3771175	ncRNA	0	0.86	5E-11	10.30102999566398		   1.20	[1.14-1.28] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	4p14	4	38811255	TLR1,TLR6, TLR10, MIR574, FAM114A1	TLR1 - TLR6	7096	10333		        6.06	       12.45	rs17616434-T	rs17616434	0	17616434	Intergenic	1	0.78	5E-11	10.30102999566398		   1.23	[1.18-1.29] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	3q28	3	188354725	LPP, BCL6	LPP			4026			rs9865818-G	rs9865818	0	9865818	intron	0	0.41	3E-10	9.522878745280336		   1.12	[1.09-1.16] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	8q24.21	8	127802783	MYC, PVT1	MIR1204 - PVT1	100302185	5820		        6.76	       87.85	rs4410871-T	rs4410871	0	4410871	Intergenic	1	0.28	5E-10	9.301029995663981		   1.14	[1.09-1.19] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	4q27	4	122432277	IL2, ADAD1, KIAA1109, IL21	ADAD1 - IL2	132612	3558		        2.48	       19.19	rs17454584-G	rs17454584	0	17454584	Intergenic	1	0.26	6E-10	9.221848749616356		   1.15	[1.1-1.2] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p21.33	6	31386405	HLA-B, MICA, HLA-C, MICB	TRNAI25			100189401			rs6932730-T	rs6932730	0	6932730		0	0.82	4E-8	7.397940008672037		   1.14	[1.09-1.20] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	2q13	2	111712578	ANAPC1	RPL34P8 - ANAPC1	100270999	64682		       37.24	       55.06	rs11122895-T	rs11122895	0	11122895	Intergenic	1	0.39	2E-6	5.698970004336018		   1.09	[1.05-1.13] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/08/2014	23817571	Bonnelykke K	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817571	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	6p12.1	6	56345966	COL21A1	TRNAI25			100189401			rs16887812-T	rs16887812	0	16887812		0	0.35	7E-6	5.154901959985742		   1.10	[1.05-1.14] 	Affymetrix & Illumina [~2.5 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	1p36.22	1	10521601	PEX14	PEX14			5195			rs2056417-A	rs2056417	0	2056417	intron	0	0.3027	4E-7	6.397940008672037		    .07	[0.041-0.091] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	2p25.1	2	8302118	ID2	LINC00299			339789			rs10174949-A	rs10174949	0	10174949	intron	0	0.2728	1E-7	7		    .07	[0.044-0.096] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	2q12.1	2	102263004	IL1RL2, IL1RL1	IL1RL2 - IL1RL1	8808	9173		       23.00	       48.50	rs10189629-A	rs10189629	0	10189629	Intergenic	1	0.1450	2E-16	15.69897000433602		    .14	[0.11-0.18] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	2q33.1	2	198049348	PLCL1	PLCL1			5334			rs10497813-G	rs10497813	0	10497813	intron	0	0.4825	6E-10	9.221848749616356		    .07	[0.050-0.097] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	3q28	3	188411191	LPP, BCL6	LPP			4026			rs9860547-A	rs9860547	0	9860547	intron	0	0.4629	1E-9	8.999999999999998		    .07	[0.050-0.098] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	4p14	4	38809930	TLR1,TLR6,TLR10	TLR1 - TLR6	7096	10333		        4.74	       13.77	rs2101521-A	rs2101521	0	2101521	Intergenic	1	0.2384	5E-21	20.30102999566398		    .14	[0.11-0.17] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	4q27	4	122408207	ADAD1	ADAD1			132612			rs17388568-A	rs17388568	0	17388568	intron	0	0.2748	4E-8	7.397940008672037		    .07	[0.047-0.099] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5p13.1	5	40486794	DAB2, PTGER4	LINC00603 - PTGER4	102467077	5734		      433.47	      193.14	rs7720838-G	rs7720838	0	7720838	Intergenic	1	0.4254	8E-11	10.09691001300805		    .08	[0.055-0.102] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5q22.1	5	111131801	WDR36, CAMK4, TSLP	WDR36 - RPS3AP21	134430	402287		        1.30	       60.38	rs1438673-C	rs1438673	0	1438673	Intergenic	1	0.4951	2E-20	19.69897000433602		    .11	[0.087-0.134] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5q23.2	5	123279830	Intergenic	SUMO1P5 - CEP120	474341	153241		       36.24	       65.06	rs6881280-G	rs6881280	0	6881280	Intergenic	1	0.0691	2E-6	5.698970004336018		    .12	[0.068-0.164] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	5q31.1	5	132660272	Intergenic	IL13			3596			rs20541-A	rs20541	0	20541	missense	0	0.2019	1E-6	5.999999999999999		    .07	[0.043-0.101] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.33	6	31384336	HLA-C, MICA	TRNAI25			100189401			rs9266772-C	rs9266772	0	9266772		0	0.1882	3E-12	11.52287874528034		    .10	[0.075-0.133] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	6	32658534	HLA-DQA1, HLA-DQB1	TRNAI25			100189401			rs6906021-C	rs6906021	0	6906021		0	0.4749	7E-15	14.15490195998574		    .09	[0.071-0.118] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	6p21.32	6	33518955	Intergenic	TRNAI25			100189401			rs6457730-A	rs6457730	0	6457730		0	0.0115	1E-6	5.999999999999999		    .28	[0.16-0.39] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	7p12.2	7	50214301	Intergenic	C7orf72 - IKZF1	100130988	10320		       55.05	       90.48	rs17664743-A	rs17664743	0	17664743	Intergenic	1	0.2244	5E-6	5.301029995663981		    .07	[0.038-0.095] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	8q21.13	8	80355920	TPD52, ZBTB10	RPS5P5 - ZBTB10	340443	65986		       54.38	      129.70	rs6473223-T	rs6473223	0	6473223	Intergenic	1	0.3599	8E-8	7.096910013008055		    .07	[0.042-0.091] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	9p24.1	9	6172380	RANBP6, IL33	RANBP6 - GTF3AP1	26953	100135064		      156.74	       23.66	rs7032572-G	rs7032572	0	7032572	Intergenic	1	0.1665	2E-9	8.698970004336019		    .11	[0.077-0.15] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10p13	10	13268071	Intergenic	UCMA - PHYH	221044	5264		       33.74	        9.73	rs10796051-C	rs10796051	0	10796051	Intergenic	1	0.4488	7E-6	5.154901959985742		    .05	[0.030-0.076] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10q23.1	10	83493925	Intergenic	MARK2P15 - HMGN2P8	100533794	100288691		      179.47	      587.41	rs1414874-A	rs1414874	0	1414874	Intergenic	1	0.0573	9E-6	5.045757490560675		    .11	[0.063-0.161] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	11q13.5	11	76588150	C11orf30, LRRC32	C11orf30 - LRRC32	56946	2615		       35.25	       69.37	rs2155219-T	rs2155219	0	2155219	Intergenic	1	0.5146	2E-19	18.69897000433602		    .11	[0.085-0.132] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	11q24.3	11	128316987	ETS1	KIRREL3-AS3 - ETS1	283165	2113		     1310.93	      141.77	rs10893845-T	rs10893845	0	10893845	Intergenic	1	0.5074	6E-7	6.221848749616355		    .06	[0.036-0.082] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	13q32.3	13	99122393	Intergenic	DOCK9-AS2 - RPS6P23	100861541	100130313		       33.77	       51.16	rs11069349-A	rs11069349	0	11069349	Intergenic	1	0.2066	5E-6	5.301029995663981		    .07	[0.039-0.097] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	14q13.1	14	33448832	Intergenic	NPAS3			64067			rs11845867-C	rs11845867	0	11845867	intron	0	0.2642	6E-6	5.221848749616356		    .06	[0.036-0.090] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	15q22.33	15	67157967	SMAD3	SMAD3			4088			rs17228058-G	rs17228058	0	17228058	intron	0	0.2353	1E-8	8		    .08	[0.052-0.106] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	15q23	15	70506220	Intergenic	MIR629 - UACA	693214	55075		      426.75	      148.33	rs8034004-C	rs8034004	0	8034004	Intergenic	1	0.4435	6E-6	5.221848749616356		    .06	[0.035-0.088] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	16p13.13	16	11136846	CLEC16A	CLEC16A			23274			rs7203459-C	rs7203459	0	7203459	intron	0	0.2674	2E-7	6.698970004336019		    .07	[0.044-0.097] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	16p12.1	16	27399508	IL4R, IL21R	IL4R - IL21R	3566	50615		       34.73	        2.65	rs2107357-A	rs2107357	0	2107357	Intergenic	1	0.1382	3E-7	6.522878745280337		    .09	[0.054-0.122] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	17q12	17	39917778	GSDMB, IKZF3	GSDMB			55876			rs9303280-T	rs9303280	0	9303280	intron	0	0.4805	9E-9	8.045757490560675		    .07	[0.045-0.092] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	17q25.3	17	79414777	Intergenic	RBFOX3;LOC102723900			146713;102723900			rs1316453-C	rs1316453	0	1316453	intron;intron	0	0.3466	7E-6	5.154901959985742		    .06	[0.035-0.090] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	19p13.11	19	18456229	Intergenic	ELL			8178			rs731945-T	rs731945	0	731945	intron	0	0.3154	6E-6	5.221848749616356		    .06	[0.033-0.083] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	20q13.2	20	51524725	NFATC2	NFATC2			4773			rs6021270-C	rs6021270	0	6021270	intron	0	0.0576	7E-9	8.154901959985743		    .15	[0.10-0.20] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	22q13.2	22	41265150	Intergenic	RANGAP1			5905			rs2235852-T	rs2235852	0	2235852	intron	0	0.3267	4E-6	5.397940008672037		    .06	[0.033-0.082] unit increase	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10p15.1	10	6025725	Intergenic	IL2RA			3559			rs2025345-G	rs2025345	0	2025345	intron	0	0.3743	3E-6	5.522878745280337		    .06	[0.033-0.081] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10p14	10	9011169	GATA3	RNA5SP299 - LINC00709	100873574	100507163		      354.34	      264.44	rs962993-T	rs962993	0	962993	Intergenic	1	0.4292	2E-8	7.698970004336018		    .07	[0.046-0.095] unit decrease	Illumina [2.4 million] (Imputed)	N
01/09/2014	23817569	Hinds DA	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817569	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	14q21.1	14	37607943	FOXA1, TTC6	FOXA1 - TTC6	3169	319089		       12.82	       14.67	rs1998359-G	rs1998359	0	1998359	Intergenic	1	0.2491	5E-8	7.30102999566398		    .08	[0.052-0.110] unit increase	Illumina [2.4 million] (Imputed)	N
12/12/2013	23817570	Shi Y	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817570	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	4q12	4	55885574	EXOC1	EXOC1			55763			rs13117307-T	rs13117307	0	13117307	intron	0	0.10	3E-10	9.522878745280336	(Matched)	   1.28	[1.19-1.38] 	Affymetrix [563,339]	N
12/12/2013	23817570	Shi Y	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817570	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	6	33104395	HLA-DPB2	TRNAI25			100189401			rs4282438-?	rs4282438	0	4282438		0	0.56	5E-27	26.30102999566398	(Stringently Matched)	   1.35	[1.27-1.41] 	Affymetrix [563,339]	N
12/12/2013	23817570	Shi Y	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817570	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	17q12	17	39895095	GSDMB	ZPBP2 - GSDMB	124626	55876		       17.20	        9.50	rs8067378-G	rs8067378	0	8067378	Intergenic	1	0.22	9E-10	9.045757490560675	(Matched)	   1.19	[1.13-1.26] 	Affymetrix [563,339]	N
12/12/2013	23817570	Shi Y	06/30/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23817570	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	6p21.32	6	33236497	Intergenic	TRNAI25			100189401			rs9277952-?	rs9277952	0	9277952		0	0.53	2E-9	8.698970004336019	(Matched)	   1.18	[1.12-1.23] 	Affymetrix [563,339]	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	1p36.32	1	3167148	PRDM16	PRDM16			63976			rs2651899-C	rs2651899	0	2651899	intron	0	0.41	4E-14	13.39794000867204		   1.09	[1.07-1.11] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	1p36.21	1	15222140	Intergenic	C1orf195 - FHAD1	727684	114827		       50.52	       25.09	rs10737909-?	rs10737909	0	10737909	Intergenic	1	0.54	2E-7	6.698970004336019		   1.06	[1.04-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	1p32.3	1	54202605	Intergenic	MRPL37			51253			rs1890566-G	rs1890566	0	1890566	intron	0	0.43	8E-7	6.096910013008056		   1.06	[1.04-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	1p13.2	1	115135325	TSPAN2	TSPAN2 - NGF	10100	4803		       45.83	      150.59	rs12134493-A	rs12134493	0	12134493	Intergenic	1	0.12	5E-14	13.30102999566398		   1.14	[1.10-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	1q22	1	156476450	MEF2D, APOA1BP	MEF2D			4209			rs2274316-C	rs2274316	0	2274316	intron	0	0.36	1E-8	8		   1.07	[1.05-1.10] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	2q37.1	2	233919016	TRPM8	TRPM8			79054			rs6741751-?	rs6741751	0	6741751	intron	0	0.9	9E-14	13.04575749056067		   1.15	[1.11-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	3p22.2	3	38844922	Intergenic	SCN10A - SCN11A	6336	11280		       50.91	         .85	rs3923518-A	rs3923518	0	3923518	Intergenic	1	0.25	8E-6	5.096910013008055		   1.06	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	3p12.2	3	80319313	Intergenic	HNRNPA3P8 - GBE1	100129557	2632		      102.05	     1170.39	rs10511112-C	rs10511112	0	10511112	Intergenic	1	0.07	5E-6	5.301029995663981		   1.11	[1.06-1.16] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	5q11.2	5	54084725	Intergenic	ARL15			54622			rs273218-?	rs273218	0	273218	intron	0	0.8	2E-6	5.698970004336018		   1.06	[1.04-1.1] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	5q15	5	93128710	Intergenic	CCT7P2 - POLD2P1	100288772	391811		      237.79	      138.63	rs12519773-?	rs12519773	0	12519773	Intergenic	1	0.52	2E-6	5.698970004336018		   1.05	[1.03-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	5q23.2	5	122929041	Intergenic	SNX24			28966			rs2447820-T	rs2447820	0	2447820	intron	0	0.1	4E-6	5.397940008672037		   1.09	[1.05-1.13] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	5q31.3	5	143520236	Intergenic	NR3C1			2908			rs12153243-T	rs12153243	0	12153243	intron	0	0.39	6E-6	5.221848749616356		   1.05	[1.03-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	5q33.3	5	159940964	Intergenic	ADRA1B			147			rs11750092-T	rs11750092	0	11750092	intron	0	0.16	7E-6	5.154901959985742		   1.07	[1.04-1.11] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	6p24.1	6	12903725	PHACTR1, TBC1D7	PHACTR1			221692			rs9349379-?	rs9349379	0	9349379	intron	0	0.6	5E-8	7.30102999566398		   1.08	[1.04-1.1] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	6p21.2	6	39215694	Intergenic	KCNK5			8645			rs10456100-T	rs10456100	0	10456100	intron	0	0.27	5E-7	6.30102999566398		   1.07	[1.04-1.10] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	6p21.1	6	44457063	Intergenic	TRNAI25			100189401			rs543844-G	rs543844	0	543844		0	0.34	3E-6	5.522878745280337		   1.06	[1.03-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	6q16.1	6	96617336	FHL5	FHL5			9457			rs11759769-A	rs11759769	0	11759769	UTR-3	0	0.22	1E-11	11		   1.10	[1.07-1.13] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	6q22.31	6	121495733	Intergenic	GJA1 - SLC25A5P7	2697	442255		       46.01	      158.01	rs9490306-A	rs9490306	0	9490306	Intergenic	1	0.14	7E-6	5.154901959985742		   1.08	[1.05-1.12] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	6q24.3	6	148602653	Intergenic	SNRPEP6 - RPSAP40	100874414	100270917		       35.00	       44.97	rs13196614-T	rs13196614	0	13196614	Intergenic	1	0.18	5E-6	5.301029995663981		   1.08	[1.04-1.11] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	6q25.2	6	152944075	Intergenic	TUBB4BP7 - FBXO5	442271	26271		       44.60	       26.45	rs13218732-?	rs13218732	0	13218732	Intergenic	1	0.97	3E-6	5.522878745280337		   1.16	[1.09-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	7p14.1	7	40426601	c7orf10	SUGCT			79783			rs4379368-T	rs4379368	0	4379368	intron	0	0.11	1E-9	8.999999999999998		   1.11	[1.08-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	7q31.32	7	123736506	Intergenic	WASL			8976			rs9649465-A	rs9649465	0	9649465	intron	0	0.45	1E-6	5.999999999999999		   1.06	[1.03-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	7q36.3	7	155492440	Intergenic	EN2 - CNPY1	2020	285888		       27.61	        8.82	rs1861960-T	rs1861960	0	1861960	Intergenic	1	0.2	6E-6	5.221848749616356		   1.07	[1.04-1.10] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	8p22	8	12953643	Intergenic	KIAA1456			57604			rs2946505-?	rs2946505	0	2946505	intron	0	0.78	9E-6	5.045757490560675		   1.06	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	8p12	8	30125002	Intergenic	LEPROTL1			23484			rs12681963-T	rs12681963	0	12681963	intron	0	0.14	2E-7	6.698970004336019		   1.11	[1.06-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	8q12.2	8	61141904	Intergenic	NASPP1 - NPM1P6	282694	4875		      201.93	       60.35	rs12681792-?	rs12681792	0	12681792	Intergenic	1	0.78	9E-7	6.045757490560675		   1.08	[1.04-1.11] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	8q13.3	8	71535183	Intergenic	EYA1			2138			rs13263568-G	rs13263568	0	13263568	intron	0	0.09	2E-6	5.698970004336018		   1.10	[1.06-1.14] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	8q22.3	8	102627713	Intergenic	POU5F1P2 - KLF10	100129512	7071		        5.38	       21.06	rs6998277-C	rs6998277	0	6998277	Intergenic	1	0.21	2E-6	5.698970004336018		   1.07	[1.04-1.10] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	8q24.21	8	130021250	Intergenic	MIR5194 - ASAP1	100847051	50807		       12.80	       30.85	rs16904191-G	rs16904191	0	16904191	Intergenic	1	0.28	2E-7	6.698970004336019		   1.07	[1.04-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	9q33.1	9	115662708	Intergenic	DEC1 - LINC00474	50514	58483		      260.06	      225.56	rs12006166-T	rs12006166	0	12006166	Intergenic	1	0.16	9E-7	6.045757490560675		   1.08	[1.05-1.12] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	9q33.1	9	116419515	Intergenic	PAPPA-AS1 - ASTN2	493913	23245		       18.91	        5.71	rs17303101-A	rs17303101	0	17303101	Intergenic	1	0.28	4E-7	6.397940008672037		   1.07	[1.04-1.10] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p15.3	10	713328	Intergenic	PRR26 - LARP4B	414235	23185		       48.16	       93.59	rs7916968-G	rs7916968	0	7916968	Intergenic	1	0.09	7E-6	5.154901959985742		   1.09	[1.05-1.13] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p15.3	10	1200943	Intergenic	ADARB2			105			rs4880487-T	rs4880487	0	4880487	intron	0	0.25	3E-6	5.522878745280337		   1.06	[1.04-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p14	10	6882482	Intergenic	LINC00707 - SFMBT2	100507127	57713		       39.58	      276.14	rs11816922-A	rs11816922	0	11816922	Intergenic	1	0.08	5E-6	5.301029995663981		   1.10	[1.05-1.14] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p14	10	8677306	Intergenic	RNA5SP299 - LINC00709	100873574	100507163		       20.48	      598.31	rs827382-C	rs827382	0	827382	Intergenic	1	0.25	9E-8	7.045757490560674		   1.07	[1.04-1.10] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p13	10	13748265	Intergenic	FRMD4A			55691			rs10906466-A	rs10906466	0	10906466	intron	0	0.29	8E-6	5.096910013008055		   1.06	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p13	10	14903407	Intergenic	SUV39H2			79723			rs11594111-G	rs11594111	0	11594111	ncRNA	0	0.14	1E-7	7		   1.09	[1.06-1.12] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p13	10	16592300	Intergenic	RSU1			6251			rs7068341-T	rs7068341	0	7068341	UTR-3	0	0.12	2E-6	5.698970004336018		   1.09	[1.05-1.12] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10p11.22	10	33214251	Intergenic	NRP1			8829			rs2506155-A	rs2506155	0	2506155	intron	0	0.15	3E-6	5.522878745280337		   1.08	[1.04-1.11] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q11.23	10	51029595	Intergenic	PRKG1			5592			rs6479874-T	rs6479874	0	6479874	intron	0	0.14	3E-7	6.522878745280337		   1.09	[1.05-1.12] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q21.1	10	51922034	Intergenic	PRKG1			5592			rs11000137-T	rs11000137	0	11000137	intron	0	0.17	3E-6	5.522878745280337		   1.07	[1.04-1.10] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q22.3	10	78755324	Intergenic	LINC00595 - ZMIZ1-AS1	414243	283050		      475.11	      188.00	rs7900239-A	rs7900239	0	7900239	Intergenic	1	0.1	9E-6	5.045757490560675		   1.09	[1.05-1.13] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q23.33	10	94774506	Intergenic	CYP2C19			1557			rs6583954-T	rs6583954	0	6583954	intron	0	0.14	4E-6	5.397940008672037		   1.08	[1.04-1.11] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q24.2	10	98531419	Intergenic	HPSE2			60495			rs577969-T	rs577969	0	577969	intron	0	0.05	4E-6	5.397940008672037		   1.13	[1.07-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q24.32	10	102988961	Intergenic	CNNM2			54805			rs1890185-G	rs1890185	0	1890185	intron	0	0.39	4E-7	6.397940008672037		   1.06	[1.04-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q25.2	10	112442768	Intergenic	ZDHHC6			64429			rs12355831-G	rs12355831	0	12355831	intron	0	0.11	2E-6	5.698970004336018		   1.09	[1.05-1.14] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q26.13	10	123492159	Intergenic	RPS26P39 - GPR26	100128168	2849		      319.51	      174.20	rs705162-A	rs705162	0	705162	Intergenic	1	0.26	3E-6	5.522878745280337		   1.06	[1.04-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	10q26.3	10	130369801	Intergenic	GLRX3 - MIR378C	10539	100422867		      189.42	      592.79	rs11017221-T	rs11017221	0	11017221	Intergenic	1	0.13	1E-7	7		   1.09	[1.06-1.12] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	11p15.4	11	10652192	Intergenic	MRVI1			10335			rs4909945-?	rs4909945	0	4909945	missense	0	0.67	2E-7	6.698970004336019		   1.06	[1.04-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	11p12	11	43214511	Intergenic	RPL9P23 - HNRNPKP3	100131020	399881		     1675.53	       46.99	rs12365397-?	rs12365397	0	12365397	Intergenic	1	0.68	9E-6	5.045757490560675		   1.05	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	12p13.32	12	4414290	Intergenic	FGF23 - FGF6	8074	2251		       34.56	       19.85	rs10849061-?	rs10849061	0	10849061	Intergenic	1	0.5	2E-7	6.698970004336019		   1.06	[1.04-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	12q13.3	12	56983563	Intergenic	RDH16 - GPR182	8608	11318		       24.19	       11.01	rs4759042-?	rs4759042	0	4759042	Intergenic	1	0.63	3E-6	5.522878745280337		   1.05	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	12q13.3	12	57133500	LRP1	LRP1			4035			rs11172113-?	rs11172113	0	11172113	intron	0	0.57	4E-19	18.39794000867203		   1.11	[1.09-1.14] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	12q24.23	12	117835066	Intergenic	KSR2			283455			rs2723279-?	rs2723279	0	2723279	intron	0	0.69	5E-6	5.301029995663981		   1.06	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	13q32.2	13	98174781	Intergenic	FARP1			10160			rs285098-?	rs285098	0	285098	intron	0	0.67	7E-6	5.154901959985742		   1.05	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	15q26.2	15	96104564	Intergenic	LOC101927192			101927192			rs4984499-T	rs4984499	0	4984499	intron	0	0.35	8E-6	5.096910013008055		   1.06	[1.03-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	15q26.2	15	96266553	Intergenic	NR2F2-AS1			644192			rs1437588-?	rs1437588	0	1437588	ncRNA	0	0.52	3E-6	5.522878745280337		   1.05	[1.03-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	18q21.1	18	47333893	Intergenic	SKOR2 - MIR4527	652991	100616264		       84.71	       46.60	rs9947662-?	rs9947662	0	9947662	Intergenic	1	0.73	3E-6	5.522878745280337		   1.06	[1.03-1.09] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NR	19q13.2	19	41345604	Intergenic	TGFB1			7040			rs4803455-?	rs4803455	0	4803455	intron	0	0.5	8E-7	6.096910013008056		   1.05	[1.03-1.08] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	1p36.32	1	4122946	AJAP1	LINC01134 - AJAP1	100133612	55966		      207.50	      532.10	rs10915437-?	rs10915437	0	10915437	Intergenic	1	0.64	3E-8	7.522878745280337		   1.16	[1.1-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	1p36.22	1	10690375	Intergenic	CASZ1			54897			rs516243-A	rs516243	0	516243	intron	0	0.49	9E-6	5.045757490560675		   1.11	[1.06-1.17] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	1q22	1	156476450	MEF2D, APOA1BP	MEF2D			4209			rs2274316-C	rs2274316	0	2274316	intron	0	0.36	1E-7	7		   1.14	[1.09-1.20] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	1q25.1	1	174583673	Intergenic	RABGAP1L			9910			rs17301853-?	rs17301853	0	17301853	intron	0	0.88	7E-6	5.154901959985742		   1.19	[1.1-1.28] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	1q44	1	246059818	Intergenic	SMYD3			64754			rs6693295-T	rs6693295	0	6693295	intron	0	0.19	9E-6	5.045757490560675		   1.15	[1.08-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	2q37.1	2	233919016	TRPM8	TRPM8			79054			rs6741751-?	rs6741751	0	6741751	intron	0	0.9	1E-8	8		   1.27	[1.16-1.37] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	3p24.1	3	30438593	TGFBR2	RBMS3-AS2 - TGFBR2	100873978	7048		      795.66	      167.91	rs6790925-T	rs6790925	0	6790925	Intergenic	1	0.38	2E-8	7.698970004336018		   1.15	[1.10-1.21] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	3p14.1	3	67093414	Intergenic	KBTBD8 - MIR4272	84541	100422941		       82.20	      132.05	rs4392363-?	rs4392363	0	4392363	Intergenic	1	0.74	1E-6	5.999999999999999		   1.15	[1.09-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	3p13	3	71415184	Intergenic	FOXP1			27086			rs13063872-?	rs13063872	0	13063872	intron	0	0.93	9E-6	5.045757490560675		   1.25	[1.12-1.37] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	3p13	3	72112082	Intergenic	CCDC137P - LINC00870	642802	201617		       24.42	       39.18	rs6549438-?	rs6549438	0	6549438	Intergenic	1	0.52	4E-6	5.397940008672037		   1.12	[1.06-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	4p12	4	46821617	Intergenic	COX7B2			170712			rs11726563-?	rs11726563	0	11726563	intron	0	0.84	8E-6	5.096910013008055		   1.16	[1.09-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	4q21.3	4	86552623	Intergenic	MIR4452 - PTPN13	100616463	5783		       10.07	       41.69	rs4478147-G	rs4478147	0	4478147	Intergenic	1	0.47	2E-6	5.698970004336018		   1.12	[1.07-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	5q13.3	5	76206585	Intergenic	SV2C			22987			rs4704296-?	rs4704296	0	4704296	intron	0	0.53	6E-6	5.221848749616356		   1.11	[1.06-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	5q23.3	5	128380874	Intergenic	FBN2			2201			rs17608902-A	rs17608902	0	17608902	intron	0	0.09	1E-7	7		   1.25	[1.15-1.35] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	5q35.1	5	172132527	Intergenic	STK10			6793			rs17570583-A	rs17570583	0	17570583	intron	0	0.08	9E-6	5.045757490560675		   1.23	[1.12-1.35] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-?	rs9349379	0	9349379	intron	0	0.6	2E-6	5.698970004336018		   1.12	[1.08-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	6q16.1	6	96617336	FHL5	FHL5			9457			rs11759769-A	rs11759769	0	11759769	UTR-3	0	0.22	4E-7	6.397940008672037		   1.16	[1.09-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	6q23.2	6	131125651	Intergenic	LOC102723445			102723445			rs602848-C	rs602848	0	602848	intron	0	0.16	1E-6	5.999999999999999		   1.18	[1.10-1.26] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	6q25.2	6	153683836	Intergenic	MTND4P13 - HMGB3P19	100862853	729635		       14.01	      254.62	rs2186141-?	rs2186141	0	2186141	Intergenic	1	0.56	4E-6	5.397940008672037		   1.12	[1.06-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	7p14.1	7	40426601	c7orf10	SUGCT			79783			rs4379368-T	rs4379368	0	4379368	intron	0	0.11	7E-7	6.154901959985743		   1.20	[1.12-1.29] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	8p21.2	8	24186788	Intergenic	STC1 - ADAM28	6781	10863		      331.98	      107.25	rs11777116-T	rs11777116	0	11777116	Intergenic	1	0.08	6E-8	7.221848749616355		   1.27	[1.17-1.39] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	8q12.1	8	55687218	Intergenic	SBF1P1 - TMEM68	100133234	137695		      231.90	       51.53	rs4738393-?	rs4738393	0	4738393	Intergenic	1	0.67	6E-6	5.221848749616356		   1.09	[1.09-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	8q21.13	8	80445467	Intergenic	RPS5P5 - ZBTB10	340443	65986		      143.93	       40.15	rs400824-?	rs400824	0	400824	Intergenic	1	0.7	9E-6	5.045757490560675		   1.12	[1.06-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	8q21.3	8	91063415	Intergenic	GS1-251I9.4			100506365			rs4493873-?	rs4493873	0	4493873	ncRNA	0	0.64	5E-6	5.301029995663981		   1.14	[1.08-1.2] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	9p24.3	9	678837	Intergenic	KANK1			23189			rs12352279-C	rs12352279	0	12352279	intron	0	0.07	3E-6	5.522878745280337		   1.25	[1.14-1.37] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	9p23	9	9020223	Intergenic	PTPRD			5789			rs378363-?	rs378363	0	378363	intron	0	0.77	8E-6	5.096910013008055		   1.14	[1.08-1.2] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	9q33.1	9	116490350	ASTN2	ASTN2			23245			rs6478241-A	rs6478241	0	6478241	intron	0	0.38	1E-9	8.999999999999998		   1.16	[1.11-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	10q24.1	10	95437221	Intergenic	SORBS1			10580			rs2274491-?	rs2274491	0	2274491	intron	0	0.68	7E-6	5.154901959985742		   1.12	[1.06-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	11p11.2	11	48310476	Intergenic	OR4S1 - OR4C3	256148	256144		        3.32	       14.47	rs12282928-?	rs12282928	0	12282928	Intergenic	1	0.77	9E-6	5.045757490560675		   1.14	[1.08-1.2] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	12p13.32	12	4414290	Intergenic	FGF23 - FGF6	8074	2251		       34.56	       19.85	rs10849061-?	rs10849061	0	10849061	Intergenic	1	0.5	1E-6	5.999999999999999		   1.14	[1.08-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	12q13.3	12	57133500	LRP1	LRP1			4035			rs11172113-?	rs11172113	0	11172113	intron	0	0.57	1E-6	5.999999999999999		   1.12	[1.08-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	16q23.3	16	82929158	Intergenic	CDH13			1012			rs17675602-T	rs17675602	0	17675602	intron	0	0.13	5E-6	5.301029995663981		   1.21	[1.12-1.32] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	18q11.2	18	22504711	Intergenic	ATP7BP1 - RPS4XP18	100462825	646583		       85.42	       81.69	rs473518-?	rs473518	0	473518	Intergenic	1	0.88	9E-6	5.045757490560675		   1.20	[1.11-1.32] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	18q21.1	18	46108610	Intergenic	HAUS1			115106			rs11874712-A	rs11874712	0	11874712	intron	0	0.41	2E-7	6.698970004336019		   1.15	[1.09-1.20] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	20p12.1	20	17611655	Intergenic	DSTN - RRBP1	11034	6238		        3.65	        2.02	rs12480819-G	rs12480819	0	12480819	Intergenic	1	0.24	3E-6	5.522878745280337		   1.15	[1.08-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	20q11.22	20	35795712	Intergenic	PHF20			51230			rs11906854-G	rs11906854	0	11906854	intron	0	0.14	7E-6	5.154901959985742		   1.17	[1.09-1.26] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NR	20q13.33	20	61718507	Intergenic	CDH4			1002			rs16985493-A	rs16985493	0	16985493	intron	0	0.04	4E-6	5.397940008672037		   1.37	[1.20-1.57] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	1p36.31	1	5600949	Intergenic	MIR4417 - MIR4689	100616489	100616421		       36.81	      261.72	rs7528859-A	rs7528859	0	7528859	Intergenic	1	0.4	5E-6	5.301029995663981		   1.12	[1.07-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	1q44	1	246059818	Intergenic	SMYD3			64754			rs6693295-T	rs6693295	0	6693295	intron	0	0.19	6E-6	5.221848749616356		   1.14	[1.08-1.21] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	2q37.1	2	233919016	TRPM8	TRPM8			79054			rs6741751-?	rs6741751	0	6741751	intron	0	0.9	1E-7	7		   1.23	[1.14-1.33] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	4p13	4	41637499	Intergenic	LIMCH1			22998			rs4345220-?	rs4345220	0	4345220	intron	0	0.56	2E-6	5.698970004336018		   1.15	[1.09-1.2] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	5q23.3	5	128380874	Intergenic	FBN2			2201			rs17608902-A	rs17608902	0	17608902	intron	0	0.09	9E-6	5.045757490560675		   1.19	[1.10-1.28] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	6q23.2	6	131125651	Intergenic	LOC102723445			102723445			rs602848-C	rs602848	0	602848	intron	0	0.16	5E-6	5.301029995663981		   1.16	[1.09-1.24] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	7p21.2	7	15718375	Intergenic	LOC101927558			101927558			rs2159222-?	rs2159222	0	2159222	intron	0	0.82	8E-6	5.096910013008055		   1.16	[1.09-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	8p21.3	8	21110040	GFRA2	TMEM97P2 - GFRA2	724059	2675		      175.22	      581.98	rs7015657-G	rs7015657	0	7015657	Intergenic	1	0.3	8E-8	7.096910013008055		   1.15	[1.09-1.21] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	9q21.12	9	70479619	Intergenic	KLF9 - TRPM3	687	80036		       64.96	       49.44	rs963265-?	rs963265	0	963265	Intergenic	1	0.6	1E-6	5.999999999999999		   1.12	[1.08-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	9q22.32	9	96369762	Intergenic	SLC35D2			11046			rs10820447-T	rs10820447	0	10820447	intron	0	0.16	6E-6	5.221848749616356		   1.16	[1.09-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	10p15.3	10	1429570	Intergenic	ADARB2			105			rs2820651-A	rs2820651	0	2820651	intron	0	0.1	4E-7	6.397940008672037		   1.22	[1.13-1.31] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	10p12.1	10	29075768	Intergenic	RPL21P93 - LYZL1	653665	84569		      176.24	      213.28	rs10826566-A	rs10826566	0	10826566	Intergenic	1	0.17	4E-6	5.397940008672037		   1.16	[1.09-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	10p11.23	10	29798430	Intergenic	CKS1BP2 - KIAA1462	246714	57608		       99.78	      214.37	rs2986961-C	rs2986961	0	2986961	Intergenic	1	0.26	5E-7	6.30102999566398		   1.14	[1.08-1.20] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	10q11.23	10	49021593	Intergenic	VSTM4			196740			rs2137920-T	rs2137920	0	2137920	intron	0	0.18	1E-6	5.999999999999999		   1.15	[1.09-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	10q25.3	10	116214085	Intergenic	GFRA1			2674			rs12413355-?	rs12413355	0	12413355	intron	0	0.78	3E-6	5.522878745280337		   1.14	[1.08-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	12q13.11	12	47377646	Intergenic	MIR4494 - RPAP3	100616478	79657		       13.38	      284.29	rs2074193-C	rs2074193	0	2074193	Intergenic	1	0.21	5E-7	6.30102999566398		   1.15	[1.09-1.21] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	13q13.3	13	35194652	Intergenic	NBEA			26960			rs17051917-?	rs17051917	0	17051917	intron	0	0.89	9E-6	5.045757490560675		   1.19	[1.1-1.28] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	15q23	15	70342370	Intergenic	MIR629 - UACA	693214	55075		      262.90	      312.18	rs11072158-?	rs11072158	0	11072158	Intergenic	1	0.85	3E-6	5.522878745280337		   1.18	[1.1-1.27] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	18q21.1	18	48810331	Intergenic	CTIF			9811			rs7227892-?	rs7227892	0	7227892	intron	0	0.72	2E-6	5.698970004336018		   1.14	[1.08-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	18q21.31	18	58342372	Intergenic	NEDD4L			23327			rs12454023-?	rs12454023	0	12454023	intron	0	0.5	8E-7	6.096910013008056		   1.12	[1.08-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	19q13.2	19	38683692	Intergenic	ACTN4			81			rs973009-?	rs973009	0	973009	intron	0	0.87	4E-6	5.397940008672037		   1.18	[1.1-1.27] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	7q33	7	136899616	Intergenic	CHRM2;LOC349160			1129;349160			rs1364402-?	rs1364402	0	1364402	intron;ncRNA	0	0.91	4E-6	5.397940008672037		   1.19	[1.11-1.28] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NR	22q12.3	22	32436887	Intergenic	BPIFC			254240			rs2076054-C	rs2076054	0	2076054	intron	0	0.26	8E-6	5.096910013008055		   1.12	[1.07-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	1p13.2	1	115135325	TSPAN2	TSPAN2 - NGF	10100	4803		       45.83	      150.59	rs12134493-A	rs12134493	0	12134493	Intergenic	1	0.12	5E-8	7.30102999566398		   1.18	[1.11-1.26] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	1q25.1	1	174583673	Intergenic	RABGAP1L			9910			rs17301853-?	rs17301853	0	17301853	intron	0	0.88	1E-6	5.999999999999999		   1.16	[1.1-1.25] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	1q41	1	214781596	Intergenic	ABHD17AP3 - GAPDHP24	648359	391162		      172.39	       88.96	rs6695352-?	rs6695352	0	6695352	Intergenic	1	0.5	4E-6	5.397940008672037		   1.10	[1.05-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	2q31.2	2	179281548	Intergenic	SESTD1 - ZNF385B	91404	151126		       16.93	      160.43	rs6733818-G	rs6733818	0	6733818	Intergenic	1	0.4	7E-6	5.154901959985742		   1.10	[1.05-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	2q37.1	2	233919016	TRPM8	TRPM8			79054			rs6741751-?	rs6741751	0	6741751	intron	0	0.9	9E-11	10.04575749056067		   1.25	[1.16-1.33] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	5p13.3	5	29040014	Intergenic	SUCLG2P4 - CTD-2118P12.1	100130528	101929660		       35.30	      103.69	rs488884-?	rs488884	0	488884	Intergenic	1	0.5	1E-6	5.999999999999999		   1.10	[1.06-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	5q11.2	5	51940492	Intergenic	KATNBL1P4 - RPS17P11	100128982	100271072		        8.46	      342.02	rs16879308-?	rs16879308	0	16879308	Intergenic	1	0.94	2E-6	5.698970004336018		   1.23	[1.14-1.35] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	5q32	5	146369972	Intergenic	POU4F3 - TCERG1	5459	10915		       29.45	       77.34	rs7718446-?	rs7718446	0	7718446	Intergenic	1	0.72	4E-6	5.397940008672037		   1.11	[1.06-1.16] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	5q35.3	5	177264278	Intergenic	NSD1			64324			rs10037055-?	rs10037055	0	10037055	intron	0	0.83	5E-6	5.301029995663981		   1.14	[1.08-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	6p24.1	6	12903725	TBC1D7,PHACTR1,TSC1	PHACTR1			221692			rs9349379-?	rs9349379	0	9349379	intron	0	0.6	3E-10	9.522878745280336		   1.16	[1.11-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	6p22.1	6	29639269	Intergenic	TRNAI25			100189401			rs3095267-?	rs3095267	0	3095267		0	0.81	9E-6	5.045757490560675		   1.12	[1.06-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	6p21.33	6	30769709	Intergenic	TRNAI25			100189401			rs3094117-?	rs3094117	0	3094117		0	0.77	2E-6	5.698970004336018		   1.12	[1.06-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	6q16.1	6	96617336	FHL5	FHL5			9457			rs11759769-A	rs11759769	0	11759769	UTR-3	0	0.22	2E-12	11.69897000433602		   1.18	[1.13-1.24] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	6q22.31	6	121495733	Intergenic	GJA1 - SLC25A5P7	2697	442255		       46.01	      158.01	rs9490306-A	rs9490306	0	9490306	Intergenic	1	0.14	3E-7	6.522878745280337		   1.18	[1.11-1.25] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	6q23.2	6	132567800	Intergenic	TAAR7P - TAAR6	503611	319100		        8.57	        2.52	rs9399032-A	rs9399032	0	9399032	Intergenic	1	0.33	4E-6	5.397940008672037		   1.10	[1.06-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	7p14.1	7	40426601	c7orf10	SUGCT			79783			rs4379368-T	rs4379368	0	4379368	intron	0	0.11	6E-8	7.221848749616355		   1.19	[1.12-1.27] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	7p14.1	7	41703696	Intergenic	INHBA;INHBA-AS1			3624;285954			rs2877098-?	rs2877098	0	2877098	nearGene-5;intron	0	0.66	2E-6	5.698970004336018		   1.11	[1.06-1.16] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	7q34	7	139892061	Intergenic	TBXAS1			6916			rs7810727-T	rs7810727	0	7810727	intron	0	0.31	8E-6	5.096910013008055		   1.11	[1.06-1.16] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	8q21.3	8	88535703	MMP16	RNA5SP272 - RIPK2	100873525	8767		      139.16	     1222.03	rs10504861-?	rs10504861	0	10504861	Intergenic	1	0.84	1E-8	8		   1.16	[1.11-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	9p21.3	9	22026078	Intergenic	CDKN2B-AS1			100048912			rs615552-C	rs615552	0	615552	intron	0	0.43	4E-6	5.397940008672037		   1.10	[1.06-1.14] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	9q33.1	9	116490350	ASTN2	ASTN2			23245			rs6478241-A	rs6478241	0	6478241	intron	0	0.38	1E-7	7		   1.12	[1.08-1.18] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	10q21.1	10	58444842	Intergenic	TFAM - BICC1	7019	80114		       45.61	       68.17	rs7085387-?	rs7085387	0	7085387	Intergenic	1	0.8	2E-6	5.698970004336018		   1.14	[1.08-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	10q21.3	10	67120045	Intergenic	CTNNA3			29119			rs10997517-C	rs10997517	0	10997517	intron	0	0.23	6E-6	5.221848749616356		   1.14	[1.08-1.21] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	10q23.2	10	86456645	Intergenic	WAPAL			23063			rs7075426-A	rs7075426	0	7075426	intron	0	0.47	6E-7	6.221848749616355		   1.11	[1.06-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	10q24.2	10	98886424	Intergenic	HPSE2			60495			rs11189853-G	rs11189853	0	11189853	intron	0	0.13	2E-6	5.698970004336018		   1.16	[1.09-1.23] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	10q25.3	10	113479005	Intergenic	RPS15AP30 - HABP2	100271607	3026		      491.14	       71.83	rs17770015-G	rs17770015	0	17770015	Intergenic	1	0.1	3E-6	5.522878745280337		   1.17	[1.10-1.25] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	10q26.13	10	122970360	Intergenic	C10orf88 - PSTK	80007	118672		       15.96	        9.68	rs7069346-T	rs7069346	0	7069346	Intergenic	1	0.3	3E-6	5.522878745280337		   1.11	[1.06-1.16] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	12p13.32	12	4414290	Intergenic	FGF23 - FGF6	8074	2251		       34.56	       19.85	rs10849061-?	rs10849061	0	10849061	Intergenic	1	0.5	2E-6	5.698970004336018		   1.10	[1.06-1.15] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	12q13.13	12	53601293	Intergenic	ATF7			11016			rs1485395-C	rs1485395	0	1485395	intron	0	0.16	7E-6	5.154901959985742		   1.13	[1.07-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	12q13.3	12	57133500	LRP1	LRP1			4035			rs11172113-?	rs11172113	0	11172113	intron	0	0.57	1E-10	10		   1.15	[1.1-1.19] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	20q13.2	20	55551451	Intergenic	RPL12P4 - CBLN4	116149	140689		      476.27	      445.91	rs11696973-?	rs11696973	0	11696973	Intergenic	1	0.86	8E-6	5.096910013008055		   1.15	[1.09-1.22] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
01/08/2014	23793025	Anttila V	06/23/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793025	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NR	10q24.2	10	98820366	Intergenic	HPSE2			60495			rs17470570-G	rs17470570	0	17470570	intron	0	0.08	3E-6	5.522878745280337		   1.20	[1.11-1.30] 	Affmetrix & Illumina [~2.3 million] (Imputed)	N
12/20/2013	23793441	Davis MF	06/21/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793441	Parkinson disease loci in the mid-western Amish.	Parkinson's disease	31 Amish cases, 767 Amish controls		11q21	11	96375264	CCDC82	CCDC82			79780			rs7118648-G	rs7118648	0	7118648	intron	0	0.03	2E-7	6.698970004336019		NR	NR	Affymetrix [622,812]	N
12/20/2013	23793441	Davis MF	06/21/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793441	Parkinson disease loci in the mid-western Amish.	Parkinson's disease	31 Amish cases, 767 Amish controls		15q25.1	15	81334384	TMC3	TMC3;LOC101929655			342125;101929655			rs3935740-T	rs3935740	0	3935740	intron;intron	0	0.08	2E-7	6.698970004336019		NR	NR	Affymetrix [622,812]	N
12/20/2013	23793441	Davis MF	06/21/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23793441	Parkinson disease loci in the mid-western Amish.	Parkinson's disease	31 Amish cases, 767 Amish controls		10q22.1	10	69820364	COL13A1	COL13A1			1305			rs17497526-G	rs17497526	0	17497526	intron	0	0.15	6E-7	6.221848749616355		NR	NR	Affymetrix [622,812]	N
01/07/2014	23805179	Hass J	06/21/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23805179	A Genome-Wide Association Study Suggests Novel Loci Associated with a Schizophrenia-Related Brain-Based Phenotype.	Hippocampal volume in schizophrenia	170 European ancestry individuals and 158 individuals	2,020 European ancestry cases, 7,438 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [743,591]	N
12/12/2013	23823136	Larsen MH	06/18/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23823136 	Genome-Wide Association Study of Genetic Variants in LPS-Stimulated IL-6, IL-8, IL-10, IL-1ra and TNF-α Cytokine Response in a Danish Cohort.	Lipopolysaccharide induced cytokine levels	130 European ancestry individuals	586 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [500,000]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		2q36.1	2	221207458	EPHA4	MIR4268 - EPHA4	100422959	2043		     1300.89	      210.57	rs17348202-G	rs17348202	0	17348202	Intergenic	1	0.05	1E-6	5.999999999999999		   4.85	[2.57-9.13] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		22q12.2	22	31279199	LIMK2, PLA2G3, PISD	LIMK2			3985			rs4141404-A	rs4141404	0	4141404	UTR-3	0	0.25	3E-6	5.522878745280337		   2.41	[1.66-3.48] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		5p15.31	5	6813824	PAPD7	PAPD7 - MIR4278	11044	100422999		       49.09	       14.03	rs275456-A	rs275456	0	275456	Intergenic	1	0.24	3E-6	5.522878745280337		   2.26	[1.60-3.18] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		1p32.2	1	55642931	RP11-466L17.1	GOT2P1 - RPSAP20	645538	127406		      274.16	      564.54	rs1165472-G	rs1165472	0	1165472	Intergenic	1	0.30	4E-6	5.397940008672037		   2.36	[1.64-3.40] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		12p13.31	12	6199357	CD9	CD9			928			rs3181157-A	rs3181157	0	3181157	nearGene-5	0	0.10	4E-6	5.397940008672037		   3.22	[1.96-5.29] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		8p22	8	18523725	PSD3, NAT2	NAT2 - PSD3	10	23362		      122.51	        3.58	rs10090117-G	rs10090117	0	10090117	Intergenic	1	0.21	4E-6	5.397940008672037		   2.38	[1.64-3.44] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		5p15.2	5	14393512	TRIO	TRIO			7204			rs10065203-A	rs10065203	0	10065203	intron	0	0.40	4E-6	5.397940008672037		   2.51	[1.69-3.71] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		15q14	15	35757291	ATPBD4, RP11-702M1.1	DPH6-AS1			100507466			rs2947253-G	rs2947253	0	2947253	intron	0	0.11	4E-6	5.397940008672037		   3.38	[2.01-5.68] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		9q31.3	9	108693295	ACTL7B	RPL36P14 - RPL36AP35	347292	100271610		       66.10	      128.40	rs10512385-G	rs10512385	0	10512385	Intergenic	1	0.14	6E-6	5.221848749616356		   2.58	[1.71-3.89] 	Illumina [518,577]	N
12/12/2013	23776197	Leandro-Garcia LJ	06/17/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23776197	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		7p21.2	7	15093502	AGMOI, DGKB	GTF3AP5 - AGMO	100128217	392636		      107.38	      106.82	rs12699683-A	rs12699683	0	12699683	Intergenic	1	0.09	7E-6	5.154901959985742		   3.66	[2.08-6.45] 	Illumina [518,577]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	10q23.31	10	88999967	ACTA2, FAS	FAS			355			rs4406737-G	rs4406737	0	4406737	intron	0	0.57	1E-14	14		   1.27	[1.19-1.33] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	18q21.33	18	63126316	BCL2	BCL2			596			rs4987855-G	rs4987855	0	4987855	UTR-3	0	0.91	3E-12	11.52287874528034		   1.47	[1.32-1.61] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	11p15.5	11	2289922	TSPAN32	ASCL2 - C11orf21	430	29125		       18.97	        6.36	rs7944004-T	rs7944004	0	7944004	Intergenic	1	0.49	2E-10	9.698970004336017		   1.20	[1.13-1.27] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	4q25	4	108095668	LEF1	LEF1			51176			rs898518-A	rs898518	0	898518	intron	0	0.59	4E-10	9.397940008672037		   1.20	[1.14-1.27] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q33.1	2	201246657	CASP10, CASP8	CASP8			841			rs3769825-T	rs3769825	0	3769825	intron	0	0.45	3E-9	8.522878745280337		   1.19	[1.12-1.25] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	9p21.3	9	22206988	CDKN2B, AS1	UBA52P6 - DMRTA1	100130239	63951		      194.45	      239.85	rs1679013-C	rs1679013	0	1679013	Intergenic	1	0.52	1E-8	8		   1.19	[1.12-1.27] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	18q21.32	18	59955055	PMAIP1	PMAIP1 - NFE2L3P1	5366	642996		       50.75	       12.75	rs4368253-C	rs4368253	0	4368253	Intergenic	1	0.69	3E-8	7.522878745280337		   1.19	[1.12-1.27] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q13	2	110858527	ACOXL, BCL2L11	ACOXL			55289			rs13401811-G	rs13401811	0	13401811	intron	0	0.81	2E-18	17.69897000433602		   1.41	[1.30-1.52] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	8q22.3	8	102566646	ODF1, KLF10	ODF1 - POU5F1P2	4956	100129512		        5.63	       54.59	rs2511714-G	rs2511714	0	2511714	Intergenic	1	0.41	5E-8	7.30102999566398		   1.19	[1.12-1.27] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q13	2	111039881	ACOXL	ACOXL			55289			rs17483466-G	rs17483466	0	17483466	intron	0	0.2	4E-17	16.39794000867203		   1.37	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q37.1	2	230226508	SP140	SP110;SP140			3431;11262			rs13397985-G	rs13397985	0	13397985	nearGene-5;intron	0	0.18	1E-22	22		   1.45	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q37.3	2	241431686	FARP2	FARP2			9855			rs757978-A	rs757978	0	757978	missense	0	0.11	1E-7	7		   1.29	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p25.3	6	411064	IRF4	IRF4			3662			rs872071-G	rs872071	0	872071	ncRNA	0	0.51	6E-20	19.22184874961636		   1.33	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.32[rs9273363]; 6p21.32[rs674313]			HLA	 - 						rs9273363-A	rs9273363, rs674313, rs9273012					0.27	2E-10			   1.24	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	6p21.31	6	33579060	BAK1	BAK1			578			rs210142-C	rs210142	0	210142	intron	0	0.72	5E-8	7.30102999566398		   1.22	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	8q24.21[rs2466035]; 8q24.21[rs2456449]			MYC	 - 						rs2466035-C	rs2466035, rs2456449, rs2466032					0.31	2E-8			   1.21	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	11q24.1	11	123490689	SCN3B	GRAMD1B			57476			rs735665-A	rs735665	0	735665	intron	0	0.19	4E-39	38.39794000867203		   1.62	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	15q21.3[rs11636802]; 15q21.3[rs7169431]			MNS1, RFXDC2	 - 						rs11636802-G	rs11636802, rs7169431					0.11	2E-13			   1.41	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	15q23	15	69726651	RPLP1	RPLP1 - GEMIN8P1	6176	100128431		      271.11	       76.46	rs7176508-A	rs7176508	0	7176508	Intergenic	1	0.39	1E-17	17		   1.32	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	16q24.1[rs391023]; 16q24.1[rs2292982]			IRF8	 - 						rs391023-G	rs391023, rs2292982, rs305061					0.63	5E-17			   1.33	[NR] 	Illumina [549,934]	N
01/07/2014	23770605	Berndt SI	06/16/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23770605	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	18q21.33	18	63126688	BCL2	BCL2			596			rs4987852-?	rs4987852	0	4987852	UTR-3	0	NR	8E-11	10.09691001300805		   1.41	[NR] 	Illumina [549,934]	N
12/07/2013	23785401	Leone MA	06/13/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23785401	Association of genetic markers with CSF oligoclonal bands in multiple sclerosis patients.	Multiple sclerosis (OCB status)	49 European ancestry OCB negative cases, 513 European ancestry OCB positive cases	200 European ancestry OCB negative cases, 1684 European ancestry OCB positive cases	6q16.1	6	97571204	C6orf167, MMS22L, KLHL32, KIAA1900	LOC101927314			101927314			rs9320598-?	rs9320598	0	9320598	intron	0	0.951	9E-7	6.045757490560675		   2.17	[NR] 	Illumina [504,967]	N
12/05/2013	23776548	Sim X	06/12/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23776548	Genetic loci for retinal arteriolar microcirculation.	Retinal arteriolar caliber	18,722 European ancestry individuals	3,939 European ancestry individuals	5q14.3	5	88502419	TMEM161B, MEF2C	RPS3AP22 - LINC00461	100130786	645323		      119.65	       38.36	rs2194025-G	rs2194025	0	2194025	Intergenic	1	0.91	2E-12	11.69897000433602		   1.60	[1.15-2.05] unit decrease	Illumina [2,137,729] (Imputed)	N
12/05/2013	23776548	Sim X	06/12/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23776548	Genetic loci for retinal arteriolar microcirculation.	Retinal arteriolar caliber	18,722 European ancestry individuals	3,939 European ancestry individuals	17q25.1	17	76737321	SFRS2,MFSD11,JMJD6,MXRA7	SRSF2;MFSD11;MIR636			6427;79157;693221			rs3744061-G	rs3744061	0	3744061	ncRNA;intron;nearGene-5	0	0.44	2E-10	9.698970004336017		    .86	[0.61-1.11] unit decrease	Illumina [2,137,729] (Imputed)	N
12/11/2013	23752247	Loukola A	06/11/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23752247	Genome-wide association study on detailed profiles of smoking behavior and nicotine dependence in a twin sample.	Smoking behavior	1,114 European ancestry twins	5,294 European ancestry twins	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,614,137] (Imputed)	N
12/11/2013	23760081	Kim YJ	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23760081	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	6	33087084	HLA-DP	HLA-DPB1			3115			rs9277535-?	rs9277535	0	9277535	UTR-3	0	NR	4E-40	39.39794000867203		   1.89	[1.72-2.08] 	Illumina [719,265]	N
12/11/2013	23760081	Kim YJ	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23760081	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	6	31883457	EHMT2	EHMT2			10919			rs652888-?	rs652888	0	652888	intron	0	NR	7E-13	12.15490195998574		   1.38	[1.22-1.57] 	Illumina [719,265]	N
12/11/2013	23760081	Kim YJ	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23760081	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.33	6	31162816	TCF19	TCF19			6941			rs1419881-?	rs1419881	0	1419881	splice-3	0	NR	1E-18	18		   1.37	[1.23-1.52] 	Illumina [719,265]	N
12/11/2013	23760081	Kim YJ	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23760081	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	6	33065245	HLA-DP	HLA-DPA1			3113			rs3077-?	rs3077	0	3077	UTR-3	0	NR	5E-39	38.30102999566397		   1.89	[1.69-2.08] 	Illumina [719,265]	N
12/11/2013	23760081	Kim YJ	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23760081	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	6	32702478	HLA-DQ	TRNAI25			100189401			rs2856718-?	rs2856718	0	2856718		0	NR	2E-24	23.69897000433602		   1.60	[1.46-1.75] 	Illumina [719,265]	N
12/11/2013	23760081	Kim YJ	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23760081	A genome-wide association study identified new variants associated with the risk of chronic hepatitis B.	Chronic hepatitis B infection	400 Korean ancestry cases, 1,000 Korean ancestry controls	971 Korean ancestry cases, 1,938 Korean ancestry controls	6p21.32	6	32762235	HLA-DQ	HLA-DQB2			3120			rs7453920-?	rs7453920	0	7453920	intron	0	NR	7E-26	25.15490195998574		   2.00	[1.72-2.27] 	Illumina [719,265]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	1p34.3	1	35442850	KIAA0319L	KIAA0319L			79932			rs2275247-?	rs2275247	0	2275247	intron	0	NR	1E-10	10	(lcSSc)	   1.51	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	2q35	2	219833404	DNPEP	RPL23P4 - MIR4268	100270961	100422959		      135.19	       73.10	rs10498070-?	rs10498070	0	10498070	Intergenic	1	NR	2E-7	6.698970004336019	(lcSSc)	   1.16	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	3p14.3	3	58345459	PXK	PXK			54899			rs2176082-?	rs2176082	0	2176082	intron	0	NR	5E-11	10.30102999566398	(ACA)	   1.21	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	6q21	6	106237320	ATG5	ATG5			9474			rs3827644-?	rs3827644	0	3827644	intron	0	NR	5E-7	6.30102999566398		   1.15	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	7p15.1	7	28149792	JAZF1	JAZF1			221895			rs1635852-?	rs1635852	0	1635852	intron	0	NR	2E-8	7.698970004336018		   1.14	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	7q21.2	7	93135669	SAMD9L	SAMD9L			219285			rs1133906-?	rs1133906	0	1133906	cds-synon	0	NR	2E-7	6.698970004336019	(lcSSc)	   1.21	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	11p13	11	34742932	EHF	LOC102723568			102723568			rs1355223-?	rs1355223	0	1355223	intron	0	NR	4E-6	5.397940008672037	(lcSSc)	   1.12	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	1q25.1	1	173257056	TNFSF4	LOC100506023			100506023			rs704840-?	rs704840	0	704840	intron	0	NR	4E-7	6.397940008672037		   1.18	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	1q25.3	1	183211125	NMNAT2	LAMC2			3918			rs16860537-?	rs16860537	0	16860537	intron	0	NR	5E-6	5.301029995663981	(ACA)	   1.50	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	2q32.3	2	191075725	STAT4	STAT4			6775			rs7601754-?	rs7601754	0	7601754	intron	0	NR	3E-11	10.52287874528034		   1.32	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	5q33.1	5	151081488	TNIP1	TNIP1			10318			rs960709-?	rs960709	0	960709	intron	0	NR	2E-8	7.698970004336018		   1.21	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	6p21.31	6	34959503	UHRF1BP1	ANKS1A			23294			rs1535001-?	rs1535001	0	1535001	intron	0	NR	3E-7	6.522878745280337		   1.18	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	6q23.3	6	137811379	TNFAIP3	BTF3L4P3 - TNFAIP3	391040	7128		      266.94	       55.81	rs10499197-?	rs10499197	0	10499197	Intergenic	1	NR	2E-9	8.698970004336019		   1.64	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	7q32.1	7	129055929	TNPO3, IRF5	TNPO3;TPI1P2			23534;286016			rs13239597-?	rs13239597	0	13239597	nearGene-5;ncRNA	0	NR	1E-29	28.99999999999999		   1.66	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	8p23.1	8	11486464	BLK	FAM167A - BLK	83648	640		       19.70	        7.55	rs2736340-?	rs2736340	0	2736340	Intergenic	1	NR	1E-8	8		   1.22	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	11p15.5	11	601785	IRF7	PHRF1			57661			rs2396545-?	rs2396545	0	2396545	intron	0	NR	8E-6	5.096910013008055	(ACA)	   1.19	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	15q24.2	15	75132252	CSK	PPCDC - RPL36AP45	60490	441727		       81.53	       54.40	rs7172677-?	rs7172677	0	7172677	Intergenic	1	NR	3E-8	7.522878745280337		   1.21	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	16p11.2	16	31315385	ITGAM	ITGAM			3684			rs11860650-?	rs11860650	0	11860650	intron	0	NR	1E-10	10		   1.32	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	16q24.1	16	85939422	IRF8	MIR6774 - LINC01082	102466732	100506542		       21.01	      256.76	rs12711490-?	rs12711490	0	12711490	Intergenic	1	NR	3E-10	9.522878745280336		   1.28	[NR] 	Illumina [NR]	N
12/11/2013	23740937	Martin JE	06/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23740937	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	17q12	17	39820216	IKZF3	IKZF3			22806			rs9303277-?	rs9303277	0	9303277	intron	0	NR	7E-6	5.154901959985742	(ACA)	   1.19	[NR] 	Illumina [NR]	N
12/05/2013	23753411	Turner ST	06/10/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23753411	Genomic association analysis of common variants influencing antihypertensive response to hydrochlorothiazide.	Response to diuretic therapy in hypertension	424 European ancestry individuals	841 European ancestry individuals	20q13.32	20	58987047	TH1L, GNAS, EDN3	NELFCD			51497			rs2273359-C	rs2273359	0	2273359	intron	0	0.04	6E-8	7.221848749616355		   8.15	[NR] mm Hg increase	Illumina [1,092,841] (imputed)	N
12/05/2013	23749188	Tan DE	06/09/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23749188	Genome-wide association study of B cell non-Hodgkin lymphoma identifies 3q27 as a susceptibility locus in the Chinese population.	B cell non-Hodgkin lymphoma	253 Singaporean Chinese ancestry cases; 1,438 Singaporean Chinese ancestry controls	1,175 Han Chinese ancestry cases, 5,492 Han Chinese ancestry controls	3q27.3	3	187931631	BCL6, LPP	BCL6 - LPP-AS2	604	339929		      185.91	      219.58	rs6773854-C	rs6773854	0	6773854	Intergenic	1	0.21	3E-13	12.52287874528034		   1.44	[1.31-1.59] 	Illumina [550,946]	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		1q41	1	216565446	ESRRG	ESRRG			2104			rs7553212-?	rs7553212	0	7553212	intron	0	0.32	7E-6	5.154901959985742		    .07	[0.031-0.109] unit increase	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		2q33.1	2	198046442	PLCL1	PLCL1			5334			rs67031482-?	rs67031482	0	67031482	intron	0	0.48	4E-6	5.397940008672037		NR	NR	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		3q26.32	3	177511191	Intergenic	LINC00578			100505566			rs1353899-?	rs1353899	0	1353899	intron	0	0.22	4E-6	5.397940008672037		    .09	[0.051-0.129] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		7q22.3	7	107695613	SLC26A4	SLC26A4			5172			rs2188561-?	rs2188561	0	2188561	intron	0	0.21	9E-6	5.045757490560675		    .08	[0.041-0.119] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		4q23	4	99318162	ADH1B	ADH1B			125			rs1229984-?	rs1229984	0	1229984	missense	0	0.03	2E-8	7.698970004336018		NR	NR	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		14q22.3	14	57355498	Intergenic	AP5M1 - NAA30	55745	122830		       65.42	       35.06	rs7144649-?	rs7144649	0	7144649	Intergenic	1	0.23	4E-6	5.397940008672037		    .09	[0.051-0.129] unit increase	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		20q13.31	20	57483299	Intergenic	RBM38 - HMGB1P1	55544	10357		       73.97	        4.64	rs59972978-?	rs59972978	0	59972978	Intergenic	1	0.2	5E-6	5.301029995663981		    .09	[0.051-0.129] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		NR			TLR1	 - 						rs55731057-?	rs55731057					0.25	3E-6			    .08	[0.041-0.119] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		22q12.1	22	27633571	Intergenic	RPL15P22 - MN1	100130624	4330		      745.99	      114.71	rs16985179-?	rs16985179	0	16985179	Intergenic	1	0.11	6E-6	5.221848749616356		    .12	[0.061-0.179] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		NR			Intergenic	 - 						SNP7-20089751-?	SNP7-20089751					0.09	9E-6			    .13	[0.071-0.189] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		9p22.3	9	14441679	Intergenic	TRNAH5 - CDCA4P1	100009607	100420502		        7.67	      151.90	rs59677118-?	rs59677118	0	59677118	Intergenic	1	0.06	1E-6	5.999999999999999		    .14	[0.081-0.199] unit increase	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		11p15.4	11	8229264	LMO1	LMO1			4004			rs4758317-?	rs4758317	0	4758317	intron	0	0.42	7E-7	6.154901959985743		    .08	[0.041-0.119] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		8q22.3	8	100795002	Intergenic	RPS20P23 - RPS26P6	100271089	392256		       18.13	      100.73	rs36061340-?	rs36061340	0	36061340	Intergenic	1	0.05	7E-6	5.154901959985742		    .15	[0.091-0.209] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		20q13.13	20	48172481	Intergenic	RNA5SP486 - LINC00494	100873728	284749		      299.21	      187.43	rs62202398-?	rs62202398	0	62202398	Intergenic	1	0.06	9E-6	5.045757490560675		    .15	[0.091-0.209] unit decrease	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		14q22.3	14	57202815	EXOC5	EXOC5			10640			rs11851015-?	rs11851015	0	11851015	UTR-3	0	0.15	9E-6	5.045757490560675		    .11	[0.071-0.149] unit increase	Illumina [4,058,415] (Imputed)	N
12/16/2013	23743675	Kapoor M	06/07/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		4p14	4	38790903	Intergenic	TLR10 - TLR1	81793	7096		        7.91	        5.35	rs4543123-?	rs4543123	0	4543123	Intergenic	1	0.24	9E-6	5.045757490560675		    .08	[0.041-0.119] unit increase	Illumina [4,058,415] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	6q27	6	168356431	DACT2	DACT2 - SMOC2	168002	64094		       36.68	       84.72	rs6915443-T	rs6915443	0	6915443	Intergenic	1	NR	3E-6	5.522878745280337	(WC, men)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	5q11.2	5	56564125	MAP3K1	LOC101928448			101928448			rs11743303-G	rs11743303	0	11743303	intron	0	NR	8E-7	6.096910013008056	(WCadjBMI, women)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	4q28.3	4	135272185	PABPC4L	EEF1A1P35 - KRT18P54	389223	100418792		      225.34	       99.00	rs17639207-T	rs17639207	0	17639207	Intergenic	1	NR	8E-6	5.096910013008055	(WCadjBMI, men)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	2q36.3	2	226222568	IRS1	NYAP2 - MIR5702	57624	100847053		      568.55	      436.14	rs2943636-G	rs2943636	0	2943636	Intergenic	1	NR	2E-7	6.698970004336019	(WCadjBMI, men)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	2p12	2	75232542	TACR1	MIR5000 - GAPDHP57	100846995	100421188		      141.63	      223.45	rs765684-G	rs765684	0	765684	Intergenic	1	NR	9E-7	6.045757490560675	(WHR, men)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	3p25.2	3	12447383	PPARG	PPARG - TSEN2	5468	80746		       13.03	       37.05	rs4684854-C	rs4684854	0	4684854	Intergenic	1	NR	4E-6	5.397940008672037	(WHRadjBMI, women)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	6p21.1	6	43796814	VEGFA	TRNAI25			100189401			rs1358980-T	rs1358980	0	1358980		0	NR	2E-11	10.69897000433602	(WHRadjBMI, women)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	3p14.1	3	64732582	ADAMTS9, ADAMTS9-AS2, MIR548AN	ADAMTS9-AS2			100507098			rs2371767-G	rs2371767	0	2371767	intron	0	NR	2E-6	5.698970004336018	(WHRadjBMI, women)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	2q24.3	2	164683151	COBLL1, SNORA70F, GRB14	COBLL1			22837			rs6717858-T	rs6717858	0	6717858	UTR-3	0	NR	6E-16	15.22184874961635	(WHRadjBMI, women)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
01/09/2014	23754948	Randall JC	06/06/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23754948	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 Europrean ancestry men, up to 73,137 European ancestry women	up to 62,395 Europrean ancestry men, up to 74,657 European ancestry women	1q41	1	219580167	LYPLAL1, SLC30A10, ZC3H11B	RIMKLBP2 - ZC3H11B	100422371	643136		      379.47	       27.76	rs2820443-T	rs2820443	0	2820443	Intergenic	1	NR	7E-16	15.15490195998574	(WHRadjBMI, women)	NR	NR	Affymetrix & Illumina [~2.8 million] (Imputed)	N
12/06/2013	23761726	Yazar S	06/06/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23761726	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		12p11.21	12	31944426	AMN1	RPLP2P4 - RPL12P32	100271347	100132795		       46.30	        3.82	rs1151008-G	rs1151008	0	1151008	Intergenic	1	NR	1E-6	5.999999999999999		    .14	[0.085-0.203] unit decrease	Illumina [~2.5 million] (Imputed)	N
12/06/2013	23761726	Yazar S	06/06/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23761726	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		3q13.13	3	109743553	DPPA4, DPPA2	MIR4445 - RPSAP29	100616129	389141		      140.66	      938.66	rs1164064-A	rs1164064	0	1164064	Intergenic	1	NR	2E-6	5.698970004336018		    .13	[0.079-0.189] unit increase	Illumina [~2.5 million] (Imputed)	N
12/06/2013	23761726	Yazar S	06/06/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23761726	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		13q22.2	13	75674967	NR	LMO7			4008			rs11841001-A	rs11841001	0	11841001	intron	0	NR	4E-6	5.397940008672037		    .21	[0.12-0.30] unit increase	Illumina [~2.5 million] (Imputed)	N
12/06/2013	23761726	Yazar S	06/06/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23761726	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		16q23.2	16	80271654	NR	MAF - DYNLRB2	4094	83657		      670.93	      269.30	rs11859036-A	rs11859036	0	11859036	Intergenic	1	NR	7E-6	5.154901959985742		    .13	[0.071-0.185] unit increase	Illumina [~2.5 million] (Imputed)	N
12/06/2013	23761726	Yazar S	06/06/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23761726	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		6q27	6	169420286	NR	THBS2 - DKFZp686L13185	7058	401287		      166.17	        6.12	rs438465-C	rs438465	0	438465	Intergenic	1	NR	7E-6	5.154901959985742		    .17	[0.097-0.249] unit decrease	Illumina [~2.5 million] (Imputed)	N
12/06/2013	23761726	Yazar S	06/06/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23761726	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		2q22.1	2	137011132	NR	THSD7B			80731			rs979976-A	rs979976	0	979976	intron	0	NR	8E-6	5.096910013008055		    .13	[0.075-0.193] unit increase	Illumina [~2.5 million] (Imputed)	N
12/06/2013	23761726	Yazar S	06/06/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23761726	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		3q25.31	3	156618766	NR	SSR3 - TIPARP-AS1	6747	100287227		       63.58	       54.41	rs7651778-C	rs7651778	0	7651778	Intergenic	1	NR	5E-6	5.301029995663981		    .13	[0.071-0.181] unit increase	Illumina [~2.5 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NR	21q11.2	21	14309673	ABCC13	ABCC13 - HSPA13	150000	6782		        8.29	       61.44	rs2192161-A	rs2192161	0	2192161	Intergenic	1	0.06	7E-8	7.154901959985742		    .20	[0.13-0.27] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NR	16q23.3	16	82424128	Intergenic	MPHOSPH6 - CDH13	10200	1012		      253.90	      202.67	rs7187223-A	rs7187223	0	7187223	Intergenic	1	0.96	1E-7	7		    .25	[0.16-0.34] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NR	7p21.1	7	20047359	Intergenic	LOC101927668			101927668			rs6954796-C	rs6954796	0	6954796	intron	0	0.13	2E-6	5.698970004336018		    .12	[0.073-0.175] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NR	13q12.3	13	30740543	ALOX5AP	ALOX5AP			241			rs3922435-?	rs3922435	0	3922435	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NR	13q12.3	13	29773698	UBL3	UBL3			5412			rs2892463-?	rs2892463	0	2892463	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	19p13.3	19	1423200	DAZAP1	DAZAP1			26528			rs4807927-A	rs4807927	0	4807927	intron	0	0.94	1E-6	5.999999999999999		    .21	[0.12-0.29] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	10p15.2	10	3366755	BC037918	PITRM1-AS1 - KLF6	100507034	1316		      218.13	      409.24	rs17135159-A	rs17135159	0	17135159	Intergenic	1	0.80	2E-6	5.698970004336018		    .11	[0.062-0.152] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	10q21.2	10	60788632	CDC2	CDK1			983			rs3213056-A	rs3213056	0	3213056	intron	0	0.03	3E-6	5.522878745280337		    .38	[0.22-0.53] unit decrease	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	9p23	9	12108916	Intergenic	AKAP8P1 - JKAMPP1	646114	100049717		     1095.82	      178.41	rs12351590-?	rs12351590	0	12351590	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	14q23.1	14	61432121	PRKCH	PRKCH			5583			rs17098356-?	rs17098356	0	17098356	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	13q33.3	13	107482561	FAM155A	FAM155A			728215			rs9520462-?	rs9520462	0	9520462	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	7q31.33	7	124744273	GPR37	RPS2P31 - GPR37	392781	2861		      262.84	        1.33	rs7802263-?	rs7802263	0	7802263	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	3q26.1	3	162351221	Intergenic	OTOL1 - TOMM22P6	131149	100287573		      847.27	      135.30	rs12493123-?	rs12493123	0	12493123	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	6p24.1	6	11617934	Intergenic	TMEM170B - ADTRP	100113407	84830		       34.41	       95.72	rs479526-T	rs479526	0	479526	Intergenic	1	0.55	3E-6	5.522878745280337		    .09	[0.054-0.132] 	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NR	7p21.3	7	13504104	Intergenic	RBMX2P4 - RPL26P21	100862677	646161		      581.18	      367.68	rs13307587-A	rs13307587	0	13307587	Intergenic	1	0.67	5E-6	5.301029995663981		    .09	[0.051-0.125] unit decrease	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		16q22.3	16	73679784	Intergenic	LOC101927998			101927998			rs764255-T	rs764255	0	764255	intron	0	0.66	2E-7	6.698970004336019		    .08	[0.048-0.106] unit decrease	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1p13.1	1	116197828	Intergenic	MAB21L3 - ATP1A1	126868	476		       62.59	      174.35	rs4839516-A	rs4839516	0	4839516	Intergenic	1	0.31	4E-7	6.397940008672037		    .08	[0.05-0.108] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		14q23.1	14	61428327	PRKCH	PRKCH			5583			rs11158345-T	rs11158345	0	11158345	intron	0	0.82	3E-6	5.522878745280337		    .08	[0.049-0.119] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		13q21.33	13	70236091	Intergenic	ATXN8OS - MTCL1P1	6315	100288130		       96.34	      687.57	rs1928007-A	rs1928007	0	1928007	Intergenic	1	0.91	5E-6	5.301029995663981		    .11	[0.061-0.155] unit decrease	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		4p15.33	4	12767608	Intergenic	RNA5SP156 - HSP90AB2P	100873422	391634		     1353.45	      568.78	rs11945798-T	rs11945798	0	11945798	Intergenic	1	0.96	5E-6	5.301029995663981		    .18	[0.1-0.25] unit decrease	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		14q31.1	14	82911659	Intergenic	ENSAP2 - RNU7-51P	319114	100151647		      218.46	      136.92	rs12050412-T	rs12050412	0	12050412	Intergenic	1	0.80	5E-6	5.301029995663981		    .08	[0.044-0.11] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1q23.3	1	162349734	NOS1AP	NOS1AP			9722			rs11577628-A	rs11577628	0	11577628	intron	0	0.92	5E-6	5.301029995663981		    .12	[0.07-0.176] unit decrease	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		19p13.3	19	1423200	DAZAP1	DAZAP1			26528			rs4807927-A	rs4807927	0	4807927	intron	0	0.94	6E-6	5.221848749616356		    .15	[0.084-0.21] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		7p21.3	7	13520596	Intergenic	RBMX2P4 - RPL26P21	100862677	646161		      597.68	      351.19	rs1357978-A	rs1357978	0	1357978	Intergenic	1	0.30	6E-6	5.221848749616356		    .07	[0.039-0.101] unit increase	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		10p15.1	10	3959705	Intergenic	KLF6 - MIR6078	1316	102464829		      174.42	       31.46	rs2031573-?	rs2031573	0	2031573	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		7p21.3	7	13514383	Intergenic	RBMX2P4 - RPL26P21	100862677	646161		      591.46	      357.40	rs13227425-?	rs13227425	0	13227425	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		12p12.3	12	17209882	Intergenic	RPL7P40 - PSMC1P8	100271220	390297		       87.42	      173.24	rs1513049-?	rs1513049	0	1513049	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1p32.1	1	58570953	Intergenic	OMA1 - TACSTD2	115209	4070		       24.18	        4.47	rs638065-?	rs638065	0	638065	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1q44	1	247420375	NLRP3	NLRP3			114548			rs10925015-?	rs10925015	0	10925015	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/10/2013	23738518	Luciano M	06/05/2013	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/23738518	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		9p23	9	12108916	Intergenic	AKAP8P1 - JKAMPP1	646114	100049717		     1095.82	      178.41	rs12351590-?	rs12351590	0	12351590	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [~2.4 million] (Imputed)	N
12/03/2013	23755828	Perera MA	06/05/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23755828	Genetic variants associated with warfarin dose in African-American individuals: a genome-wide association study.	Warfarin maintenance dose	533 African American individuals	432 African American individuals	10q23.33	10	94645745	CYP2C, CYP2C18, CYP2C9, CYP2C8, CYP2C19	HELLS - CTBP2P2	3070	100130970		       42.87	         .62	rs12777823-?	rs12777823	0	12777823	Intergenic	1	NR	5E-12	11.30102999566398		NR	NR	Illumina [3,044,177] (Imputed)	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NR	11p15.5	11	2003314	H19, MIR675	MIR675 - INS-IGF2	100033819	723961		        6.48	      125.80	rs4930103-A	rs4930103	0	4930103	Intergenic	1	0.49	5E-16	15.30102999566398	(H19-ICR-CpG02)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NR	4q28.3	4	136605429	TERF1P3	TERF1P3 - SERF1AP1	646316	100131921		      249.09	      695.58	rs10012307-T	rs10012307	0	10012307	Intergenic	1	0.06	2E-8	7.698970004336018	(H19-ICR CpG 09-10)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NR	22q11.21	22	19703979	SEPT5, GP1BB, TBX1, AC000093.3	LINC00895 - SEPT5	150185	5413		      137.14	       10.49	rs4819833-C	rs4819833	0	4819833	Intergenic	1	0.34	6E-8	7.221848749616355	(IGF2-DMR CpG01)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NR	11q14.3	11	93051037	RPL26P31	MTNR1B - RPL26P31	4544	100271469		       68.26	        1.34	rs7931462-G	rs7931462	0	7931462	Intergenic	1	0.02	2E-9	8.698970004336019	(KvDMR 10-11-12)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NR	2q24.3	2	167302841	Intergenic	XIRP2-AS1 - B3GALT1	100874011	8708		      161.89	      187.34	rs10497324-A	rs10497324	0	10497324	Intergenic	1	0.04	2E-9	8.698970004336019	(KvDMR 21)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NR	4q31.3	4	153943598	Intergenic	SFRP2 - DCHS2	6423	54798		      154.52	      290.78	rs13135284-C	rs13135284	0	13135284	Intergenic	1	0.26	5E-8	7.30102999566398	(NESPAS CpG02)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NR	3q13.13	3	110070723	Intergenic	MIR4445 - RPSAP29	100616129	389141		      467.83	      611.49	rs10934011-G	rs10934011	0	10934011	Intergenic	1	0.21	1E-9	8.999999999999998	(NESPAS CpG08_09)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	2p21	2	43590366	THADA	THADA			63892			rs11897432-A	rs11897432	0	11897432	intron	0	0.22	8E-7	6.096910013008056	(H19-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	4q12	4	53464700	FIP1L1, LNX1	LNX1			84708			rs2412488-A	rs2412488	0	2412488	intron	0	0.29	9E-7	6.045757490560675	(H19-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.5	11	1963897	MRPL23, H19, IGF2	MRPL23 - MRPL23-AS1	6150	100133545		        7.29	       19.31	rs10769945-T	rs10769945	0	10769945	Intergenic	1	0.48	5E-7	6.30102999566398	(H19-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.5	11	2003314	H19	MIR675 - INS-IGF2	100033819	723961		        6.48	      125.80	rs4930103-G	rs4930103	0	4930103	Intergenic	1	0.397	1E-14	14	(H19-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.4	11	6501574	FXC1, DNHD1	DNHD1			144132			rs2555155-G	rs2555155	0	2555155	intron	0	0.117	5E-6	5.301029995663981	(H19-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	5p15.33	5	4488132	RP11-44503.2	IRX1 - LINC01020	79192	340094		      886.73	      546.23	rs10462794-C	rs10462794	0	10462794	Intergenic	1	0.24	5E-6	5.301029995663981	(IGF2-DMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11q13.1	11	65811201	CFL1, OVOL1	OVOL1-AS1 - SNX32	101927828	254122		       20.33	       22.63	rs11227306-A	rs11227306	0	11227306	Intergenic	1	0.38	2E-7	6.698970004336019	(IGF2-DMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	13q14.3	13	54059238	LINC00458	LINC00558 - LINC00458	100861552	100507428		      183.12	       65.09	rs9596905-A	rs9596905	0	9596905	Intergenic	1	0.06	2E-6	5.698970004336018	(IGF2-DMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	15q26.1	15	92263061	SLCO3A1, ST8SIA1	SLCO3A1 - DUXAP6	28232	503635		       90.63	       18.38	rs4304977-A	rs4304977	0	4304977	Intergenic	1	0.46	5E-6	5.301029995663981	(IGF2-DMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	17q21.31	17	44960841	C1QL1	C1QL1			10882			rs1007190-T	rs1007190	0	1007190	intron	0	0.13	2E-6	5.698970004336018	(IGF2-DMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	22q13.32	22	48256185	Intergenic	LINC00898 - MIR3201	400932	100422916		      624.62	       18.18	rs1004689-G	rs1004689	0	1004689	Intergenic	1	0.467	2E-6	5.698970004336018	(IGF2-DMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	3p24.2	3	25880794	AC103588.1	LINC00692 - RPEP2	285326	645065		        7.10	      134.88	rs7644516-G	rs7644516	0	7644516	Intergenic	1	0.12	4E-6	5.397940008672037	(KvDMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	4q22.1	4	91494378	FAM190A	CCSER1			401145			rs11933531-A	rs11933531	0	11933531	intron	0	0.04	3E-8	7.522878745280337	(KvDMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	9q22.31	9	93800281	Intergenic	MIR548AU - MIR4291	100847045	100422927		      205.39	       19.08	rs7027203-C	rs7027203	0	7027203	Intergenic	1	0.35	6E-6	5.221848749616356	(KvDMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.4	11	5938527	TRIM5	OR52Q1P - OR56A3	81246	390083		       34.05	        8.82	rs3858526-C	rs3858526	0	3858526	Intergenic	1	0.27	3E-6	5.522878745280337	(KvDMR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	4q32.1	4	160107665	Intergenic	MIR3688-2 - RPS14P7	100616303	100271065		      978.77	      710.76	rs17261688-G	rs17261688	0	17261688	Intergenic	1	0.12	3E-6	5.522878745280337	(NESPAS-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	8q22.1	8	96784503	PGCP	CPQ			10404			rs3763558-A	rs3763558	0	3763558	intron	0	0.11	1E-6	5.999999999999999	(NESPAS-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	14q32.2	14	97057408	Intergenic	LINC00618 - C14orf64	145249	388011		      112.01	      868.20	rs724210-C	rs724210	0	724210	Intergenic	1	0.33	8E-7	6.096910013008056	(NESPAS-ICR)	NR	NR	Illumina [515,966]	N
12/03/2013	23725790	Renteria ME	06/03/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23725790	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	20q13.32	20	58833371	GNAS, GNAS-AS1	GNAS-AS1			149775			rs965808-G	rs965808	0	965808	intron	0	0.22	5E-9	8.301029995663981	(NESPAS-ICR)	NR	NR	Illumina [515,966]	N
11/29/2013	23727862	Savage SA	06/02/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23727862	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	6p21.31	6	34068669	GRM4	GRM4			2914			rs1906953-A	rs1906953	0	1906953	intron	0	NR	8E-9	8.096910013008056		   1.57	[1.35-1.83] 	Illumina [698,968]	N
11/29/2013	23727862	Savage SA	06/02/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23727862	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	13q14.3	13	50620269	AJ412031	RPL34P26 - DLEU7	100130718	220107		      258.51	       92.35	rs573666-G	rs573666	0	573666	Intergenic	1	NR	9E-6	5.045757490560675		   1.30	[1.16-1.47] 	Illumina [698,968]	N
11/29/2013	23727862	Savage SA	06/02/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23727862	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	10p15.1	10	5762568	C10orf18, GDI2	FAM208B			54906			rs2797501-A	rs2797501	0	2797501	missense	0	NR	8E-6	5.096910013008055		   1.61	[1.30-1.96] 	Illumina [698,968]	N
11/29/2013	23727862	Savage SA	06/02/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23727862	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	2p25.2	2	6321289	Intergenic	LINC01105 - LINC01247	150622	101929390		      341.07	       44.72	rs7591996-C	rs7591996	0	7591996	Intergenic	1	NR	1E-8	8		   1.39	[1.23-1.54] 	Illumina [698,968]	N
11/29/2013	23727862	Savage SA	06/02/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23727862	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	15q26.3	15	100188458	ADAMTS17	ADAMTS17			170691			rs2086452-C	rs2086452	0	2086452	intron	0	NR	1E-6	5.999999999999999		   1.35	[1.19-1.52] 	Illumina [698,968]	N
11/29/2013	23727862	Savage SA	06/02/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23727862	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	5q12.3	5	65151950	ADAMTS6	ADAMTS6			11174			rs17206779-G	rs17206779	0	17206779	intron	0	NR	5E-7	6.30102999566398		   1.33	[1.19-1.47] 	Illumina [698,968]	N
11/29/2013	23732972	Hashimoto R	06/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23732972	Genome-wide association study of cognitive decline in schizophrenia.	Cognitive decline	166 Japanese ancestry schizophrenia cases, 323 Japanese ancestry controls	339 schizophrenia cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [541,657]	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Insomnia	2,267 European ancestry individuals	NA	12q12	12	39960442	SLC2A13	SLC2A13			114134			rs11174478-A	rs11174478	0	11174478	intron	0	0.4	2E-6	5.698970004336018		    .10	[0.061-0.139] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Insomnia	2,267 European ancestry individuals	NA	15q21.1	15	48700700	CEP152	FBN1 - CEP152	2200	22995		       54.91	       37.24	rs2725544-C	rs2725544	0	2725544	Intergenic	1	0.23	2E-6	5.698970004336018		    .12	[0.061-0.179] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Insomnia	2,267 European ancestry individuals	NA	2q33.1	2	199149760	SATB2	PLCL1 - SATB2	5334	23314		      999.88	      119.74	rs12471454-T	rs12471454	0	12471454	Intergenic	1	0.41	6E-6	5.221848749616356		    .10	[0.061-0.139] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep depth	2,314 European ancestry individuals	NA	3q13.13	3	109810703	Intergenic	MIR4445 - RPSAP29	100616129	389141		      207.81	      871.51	rs679711-T	rs679711	0	679711	Intergenic	1	0.43	1E-6	5.999999999999999		    .10	[0.061-0.139] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep depth	2,314 European ancestry individuals	NA	15q22.2	15	62606961	Intergenic	TLN2			83660			rs12913538-A	rs12913538	0	12913538	intron	0	0.37	7E-6	5.154901959985742		    .10	[0.061-0.139] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	16p12.3	16	19393323	TMC5	CLEC19A - TMC5	728276	79838		       82.38	       17.41	rs4780805-A	rs4780805	0	4780805	Intergenic	1	0.15	8E-7	6.096910013008056		    .19	[0.11-0.27] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	8q22.1	8	97142213	PGCP	CPQ;LOC101927066			10404;101927066			rs17737465-G	rs17737465	0	17737465	intron;intron	0	0.37	2E-6	5.698970004336018		    .14	[0.081-0.199] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	16q13	16	57269282	PLLP	PLLP			51090			rs11640439-A	rs11640439	0	11640439	intron	0	0.09	3E-6	5.522878745280337		    .24	[0.14-0.34] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	3q26.31	3	175337970	NAALADL2	NAALADL2			254827			rs2042126-G	rs2042126	0	2042126	intron	0	0.48	3E-6	5.522878745280337		    .14	[0.081-0.199] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	8q21.13	8	80316591	RP11-941H19.3	RPS5P5 - ZBTB10	340443	65986		       15.06	      169.03	rs11987678-C	rs11987678	0	11987678	Intergenic	1	0.05	4E-6	5.397940008672037		    .32	[0.18-0.46] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	10q22.1	10	70741007	ADAMTS14	ADAMTS14			140766			rs10823607-T	rs10823607	0	10823607	missense	0	0.15	5E-6	5.301029995663981		    .19	[0.11-0.27] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	18q22.3	18	73914271	FBXO15	MIR548AV - FBXO15	100847083	201456		     1060.89	      158.98	rs2278331-A	rs2278331	0	2278331	Intergenic	1	NR	5E-6	5.301029995663981		    .14	[0.081-0.199] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep latency	2,280 European ancestry individuals	2,001 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	14q24.3	14	77047501	AC007686.1	LOC283575			283575			rs1986116-T	rs1986116	0	1986116	intron	0	0.24	1E-6	5.999999999999999		    .16	[0.10-0.22] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	12q12	12	39947283	SLC2A13	SLC2A13			114134			rs1005956-C	rs1005956	0	1005956	intron	0	0.41	3E-6	5.522878745280337		    .13	[0.071-0.189] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	6q24.1	6	141712589	Intergenic	RPS3AP23 - NMBR	100271131	4829		       76.09	      363.02	rs17071124-G	rs17071124	0	17071124	Intergenic	1	0.01	3E-6	5.522878745280337		    .75	[0.44-1.06] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	12p13.33	12	2674806	CACNA1C	CACNA1C			775			rs2302729-T	rs2302729	0	2302729	intron	0	0.17	4E-6	5.397940008672037		    .17	[0.092-0.248] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	3q28	3	192195081	FGF12	FGF12			2257			rs9836672-T	rs9836672	0	9836672	intron	0	0.05	5E-6	5.301029995663981		    .27	[0.15-0.39] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	9p21.3	9	25501299	TUSC1	IZUMO3 - TUSC1	100129669	286319		      955.41	      175.09	rs2210430-T	rs2210430	0	2210430	Intergenic	1	0.01	9E-6	5.045757490560675		    .65	[0.36-0.94] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	4q13.2	4	66435324	RP11-793B9.1	RPS23P3 - CENPC	100271091	1060		        3.80	     1036.95	rs1949200-T	rs1949200	0	1949200	Intergenic	1	0.13	9E-6	5.045757490560675		    .18	[0.10-0.26] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	10p12.2	10	23080492	Intergenic	RNA5SP304 - MSRB2	100873578	22921		       83.13	       15.01	rs722258-T	rs722258	0	722258	Intergenic	1	0.42	3E-6	5.522878745280337		   8.03	[4.68-11.38] unit decrease	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	16p13.3	16	7114218	Intergenic	RBFOX1			54715			rs1478693-G	rs1478693	0	1478693	intron	0	0.27	4E-6	5.397940008672037		   8.82	[5.10-12.54] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	18p11.31	18	5978932	L3MBTL4	L3MBTL4			91133			rs1539808-T	rs1539808	0	1539808	intron	0	0.01	4E-6	5.397940008672037		  44.44	[25.55-63.33] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	10q26.3	10	129875722	EBF3	EBF3			253738			rs9804200-C	rs9804200	0	9804200	intron	0	0.3	6E-6	5.221848749616356		   8.39	[4.74-12.04] unit increase	Illumina [2,380,486] (Imputed)	N
11/29/2013	23728906	Byrne EM	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728906	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	3q29	3	193054506	Intergenic	MB21D2 - VEZF1P1	151963	647319		      136.35	       99.03	rs13068101-A	rs13068101	0	13068101	Intergenic	1	0.26	7E-6	5.154901959985742		   8.50	[4.80-12.20] unit decrease	Illumina [2,380,486] (Imputed)	N
11/20/2013	23728934	Yang L	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728934	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	18q22.1	18	68625022	TMX3	MTL3P - TMX3	4531	54495		       96.90	       48.67	rs17232800-?	rs17232800	0	17232800	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [656,051]	N
11/20/2013	23728934	Yang L	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728934	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	5q14.1	5	78814709	ARSB	ARSB			411			rs6453417-?	rs6453417	0	6453417	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [656,051]	N
11/20/2013	23728934	Yang L	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728934	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	11q23.3	11	120649920	GRIK4	GRIK4			2900			rs4245040-?	rs4245040	0	4245040	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [656,051]	N
11/20/2013	23728934	Yang L	05/31/2013	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23728934	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	2q37.1	2	231454043	NCL	ZBTB8OSP2 - NCL	729898	4691		       19.61	         .71	rs16828074-?	rs16828074	0	16828074	Intergenic	1	NR	6E-9	8.221848749616356		NR	NR	Affymetrix [656,051]	N
11/20/2013	23726668	Hunter AM	05/30/2013	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/23726668	A genome-wide association study of a sustained pattern of antidepressant response.	Response to antidepressant treatment (citalopram)	869 sustained response individuals, 247 unsustained response individuals	394 sustained response individuals, 191 unsustained response individuals	8p21.3	8	19682127	CSGALNACT1	CSGALNACT1			55790			rs7816924-A	rs7816924	0	7816924	intron	0	NR	2E-7	6.698970004336019		   2.14	[1.53-2.99] 	Affymetrix [430,198] 	N
11/20/2013	23726668	Hunter AM	05/30/2013	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/23726668	A genome-wide association study of a sustained pattern of antidepressant response.	Response to antidepressant treatment (citalopram)	869 sustained response individuals, 247 unsustained response individuals	394 sustained response individuals, 191 unsustained response individuals	12q21.31	12	81150757	ACSS3	ACSS3			79611			rs10492002-?	rs10492002	0	10492002	intron	0	NR	4E-6	5.397940008672037		   1.64	[1.33-2.00] 	Affymetrix [430,198] 	N
11/20/2013	23726668	Hunter AM	05/30/2013	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/23726668	A genome-wide association study of a sustained pattern of antidepressant response.	Response to antidepressant treatment (citalopram)	869 sustained response individuals, 247 unsustained response individuals	394 sustained response individuals, 191 unsustained response individuals	1p36.23	1	9091266	NR	SLC2A5 - GPR157	6518	80045		       19.56	       12.14	rs12080794-?	rs12080794	0	12080794	Intergenic	1	NR	9E-6	5.045757490560675		   1.75	[1.33-2.27] 	Affymetrix [430,198] 	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	6q16.1	6	98136857	LOC100129158	MIR2113 - EIF4EBP2P3	100302164	100190924		      112.24	       41.80	rs9320913-A	rs9320913	0	9320913	Intergenic	1	0.483	4E-10	9.397940008672037	(Edu Years)	    .10	[NR] unit increase	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	13q32.2	13	98458955	STK24	STK24			8428			rs3783006-C	rs3783006	0	3783006	intron	0	0.454	8E-8	7.096910013008055	(Edu Years)	    .09	[NR] unit increase	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	16p11.2	16	28826194	ATXN2L	ATXN2L			11273			rs8049439-T	rs8049439	0	8049439	intron	0	0.581	1E-7	7	(Edu Years)	    .09	[NR] unit increase	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	1q32.1	1	204607855	LRRN2	MDM4			4194			rs11584700-?	rs11584700	0	11584700	intron	0	0.22	8E-12	11.09691001300806	(College)	   1.09	[NR] 	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	2q11.2	2	100202017	LOC150577	AFF3 - LINC01104	3899	150577		       59.44	        6.24	rs4851266-T	rs4851266	0	4851266	Intergenic	1	0.396	5E-11	10.30102999566398	(College)	   1.05	[NR] 	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	2q33.1	2	198520997	PLCL1	PLCL1 - SATB2	5334	23314		      371.11	      748.50	rs2054125-T	rs2054125	0	2054125	Intergenic	1	0.064	2E-7	6.698970004336019	(College)	   1.38	[NR] 	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	6p21.31	6	33694518	ITPR3	ITPR3			3710			rs3227-C	rs3227	0	3227	intron	0	0.498	3E-7	6.522878745280337	(College)	   1.04	[NR] 	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	7q22.2	7	104826517	LHFPL3	LHFPL3;LOC102724284			375612;102724284			rs4073894-A	rs4073894	0	4073894	intron;nearGene-5	0	0.207	6E-6	5.221848749616356	(College)	   1.06	[NR] 	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
11/29/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	4q34.2	4	175705121	GPM6A	GPM6A			2823			rs12640626-A	rs12640626	0	12640626	intron	0	0.58	7E-6	5.154901959985742	(College)	   1.03	[NR] 	Illumina, Affymterix, Perlegen [up to 2,309,290] (Imputed)	N
12/01/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 126,559 European ancestry individuals	NR	6p22.2	6	26510336	BTN1A1	BTN1A1			696			rs1056667-T	rs1056667	0	1056667	UTR-3	0	0.538	2E-8	7.698970004336018	(Edu Years)	    .09	[NR] unit increase	Illumina, Affymetrix, Perlegen [up to 2,321,8963] (Imputed)	N
12/01/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 126,559 European ancestry individuals	NR	2q37.2	2	236149500	GBX2	TMSB10P1 - GBX2	100506723	2637		      266.97	       16.16	rs11687170-T	rs11687170	0	11687170	Intergenic	1	0.770	3E-8	7.522878745280337	(Edu Years)	    .11	[NR] unit increase	Illumina, Affymetrix, Perlegen [up to 2,321,8963] (Imputed)	N
12/01/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 126,559 European ancestry individuals	NR	2q24.2	2	161236129	TANK	TANK;LOC101929512			10010;101929512			rs7309-A	rs7309	0	7309	UTR-3;intron	0	0.476	4E-8	7.397940008672037	(Edu Years)	    .09	[NR] unit decrease	Illumina, Affymetrix, Perlegen [up to 2,321,8963] (Imputed)	N
12/01/2013	23722424	Rietveld CA	05/30/2013	Science	http://www.ncbi.nlm.nih.gov/pubmed/23722424	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 126,559 European ancestry individuals	NR	2q37.2	2	236196875	LOC100128572	ASB18			401036			rs13401104-?	rs13401104	0	13401104	intron	0	0.82	5E-9	8.301029995663981	(College)	   1.10	[NR] 	Illumina, Affymetrix, Perlegen [up to 2,321,8963] (Imputed)	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	7q21.11	7	80711306	CD36	CD36 - SEMA3C	948	10512		       32.03	       31.23	rs2366858-C	rs2366858	0	2366858	Intergenic	1	0.173	6E-10	9.221848749616356	(AA)	    .03	[NR] unit increase	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	8p23.1	8	9329732	PPP1R3B	LOC157273			157273			rs1461729-T	rs1461729	0	1461729	intron	0	0.116	7E-9	8.154901959985743	(AA)	    .04	[NR] unit decrease	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	8p21.3	8	19961928	LPL	LPL			4023			rs326-T	rs326	0	326	intron	0	0.469	1E-8	8	(AA)	    .02	[NR] unit increase	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	16q13	16	56956804	CETP	HERPUD1 - CETP	9709	1071		       12.92	        5.12	rs247617-A	rs247617	0	247617	Intergenic	1	0.262	1E-44	44	(AA)	    .06	[NR] unit increase	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	19p13.2	19	11232027	LOC55908	DOCK6			57572			rs12979813-T	rs12979813	0	12979813	intron	0	0.495	2E-9	8.698970004336019	(AA)	    .02	[NR] unit decrease	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	21q22.11	21	30688172	Intergenic	KRTAP20-3 - KRTAP21-3	337985	100288323		       45.04	       30.35	rs13046373-C	rs13046373	0	13046373	Intergenic	1	0.391	4E-6	5.397940008672037	(AA)	    .02	[NR] unit decrease	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	11q23.3	11	116778201	APOA,APOC	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.248	3E-12	11.52287874528034	(Hispanic)	    .05	[NR] unit decrease	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	16q13	16	56956804	CETP	HERPUD1 - CETP	9709	1071		       12.92	        5.12	rs247617-C	rs247617	0	247617	Intergenic	1	0.298	3E-16	15.52287874528034	(Hispanic)	    .05	[NR] unit increase	Affymetrix [NR]	N
12/03/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	NR			APOA, APOC	 - 						SNP11-116799496-C	SNP11-116799496					.0016	1E-12		(AA)	    .41	[NR] unit increase	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	1p32.3	1	55159875	PCSK9	USP24			23358			rs17111684-A	rs17111684	0	17111684	intron	0	0.12	2E-17	16.69897000433602	(AA)	   9.01	[NR] unit decrease	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	2p24.1	2	21018633	APOB	APOB			338			rs12713956-G	rs12713956	0	12713956	intron	0	0.183	4E-8	7.397940008672037	(AA)	   4.86	[NR] unit decrease	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	2p21	2	43847292	ABCG8	ABCG8			64241			rs4245791-G	rs4245791	0	4245791	intron	0	0.143	1E-9	8.999999999999998	(AA)	   5.97	[NR] unit increase	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	19p13.2	19	11089332	LDLR	LDLR			3949			rs17249141-T	rs17249141	0	17249141	nearGene-5	0	0.0126	2E-17	16.69897000433602	(AA)	  32.93	[NR] unit decrease	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	19q13.32	19	44900155	APOE	TOMM40			10452			rs1160985-C	rs1160985	0	1160985	intron	0	0.365	2E-21	20.69897000433602	(AA)	   6.77	[NR] unit increase	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	2p23.3	2	27375230	GCKR	SNX17			9784			rs4665972-T	rs4665972	0	4665972	intron	0	0.123	1E-8	8	(AA)	    .07	[NR] unit increase	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	8p21.3	8	19961928	LPL	LPL			4023			rs326-T	rs326	0	326	intron	0	0.469	1E-8	8	(AA)	    .04	[NR] unit decrease	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	11q23.3	11	116781707	APOA,APOC	ZPR1			8882			rs6589566-C	rs6589566	0	6589566	intron	0	0.0176	5E-14	13.30102999566398	(AA)	    .21	[NR] unit increase	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	19q13.32	19	44919330	APOC1	APOC1			341			rs12721054-G	rs12721054	0	12721054	UTR-3	0	0.1137	3E-19	18.52287874528033	(AA)	    .10	[NR] unit decrease	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-C	rs780094	0	780094	intron	0	0.358	7E-9	8.154901959985743	(Hispanic)	    .07	[NR] unit increase	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	8p21.3	8	19990569	LPL	LPL - RPL30P9	4023	100270981		       23.31	      122.77	rs17410962-G	rs17410962	0	17410962	Intergenic	1	0.112	7E-9	8.154901959985743	(Hispanic)	    .11	[NR] unit decrease	Affymetrix [NR]	N
11/29/2013	23726366	Coram MA	05/29/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23726366	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	11q23.3	11	116778201	APOA, APOC	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.248	4E-33	32.39794000867203	(Hispanic)	    .16	[NR] unit increase	Affymetrix [NR]	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	3q11.2	3	97449896	EPHA6	EPHA6			285220			rs1458303-?	rs1458303	0	1458303	intron	0	NR	3E-7	6.522878745280337		   2.98	[1.84-4.12] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	4q25	4	113027634	ANK2	ANK2;LOC102723880			287;102723880			rs10014072-?	rs10014072	0	10014072	intron;ncRNA	0	NR	1E-6	5.999999999999999		    .16	[0.097-0.231] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	5q14.3	5	85287951	EDIL3,COX7C	RBBP4P6 - RPL5P17	100820741	100270839		       96.98	      176.41	rs12153606-?	rs12153606	0	12153606	Intergenic	1	NR	2E-6	5.698970004336018		    .16	[0.092-0.226] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	6q12	6	66219155	EGFL11	NUFIP1P - RNA5SP208	89761	100873468		      124.21	     1248.08	rs3857536-?	rs3857536	0	3857536	Intergenic	1	NR	4E-6	5.397940008672037		    .13	[0.074-0.184] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	12q21.2	12	75670748	KRR1,PHLDA1	PGDP2 - RPL10P13	100129649	390345		       69.20	       17.98	rs12582659-?	rs12582659	0	12582659	Intergenic	1	NR	3E-6	5.522878745280337		   1.26	[0.73-1.79] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	1p36.32	1	3774964	CCDC27, LOC388588, LRRC47, KIAA0562, DFFB	SMIM1			388588			rs1175550-A	rs1175550	0	1175550	intron	0	NR	5E-10	9.301029995663981		    .20	[0.14-0.26] unit decrease	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	1q21.3	1	151372265	SELENBP1, PSMB4, POGZ	SELENBP1			8991			rs2769264-G	rs2769264	0	2769264	intron	0	NR	3E-20	19.52287874528034		    .31	[0.25-0.38] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	5q14.1	5	79020653	DMGDH, BHMT2, BHMT	DMGDH			29958			rs921943-T	rs921943	0	921943	intron	0	NR	9E-28	27.04575749056067		    .25	[0.20-0.29] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	2q35	2	215995827	MREG	MREG			55686			rs3770549-?	rs3770549	0	3770549	intron	0	NR	3E-6	5.522878745280337		    .16	[0.092-0.230] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	6q24.1	6	139510043	CITED2	CITED2 - ATP5F1P6	10370	645440		      135.39	      104.40	rs679582-?	rs679582	0	679582	Intergenic	1	NR	3E-6	5.522878745280337		    .10	[0.056-0.134] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	9p24.2	9	2777384	KCNV2,KIAA0020	KCNV2 - KIAA0020	169522	9933		       47.35	       26.77	rs10812641-?	rs10812641	0	10812641	Intergenic	1	NR	3E-6	5.522878745280337		    .09	[0.054-0.128] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	17p11.2	17	21020764	MGC87631,DHRS7B	USP22			23326			rs7226229-?	rs7226229	0	7226229	intron	0	NR	1E-6	5.999999999999999		    .12	[0.070-0.164] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	17q25.3	17	78308429	BIRC5,SOCS3	THA1P - SOCS3	390816	9021		       52.24	       48.35	rs8081523-?	rs8081523	0	8081523	Intergenic	1	NR	5E-6	5.301029995663981		    .13	[0.075-0.185] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	19q13.33	19	49834979	MED25	MED25			81857			rs2017698-?	rs2017698	0	2017698	intron	0	NR	1E-7	7		    .49	[0.31-0.67] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	19q13.42	19	54404500	TTYH1	LAIR1 - TTYH1	3903	57348		       33.95	       10.93	rs11084337-?	rs11084337	0	11084337	Intergenic	1	NR	9E-7	6.045757490560675		    .13	[0.081-0.187] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	21q22.3	21	43058387	CBS	CBS			875			rs6586282-?	rs6586282	0	6586282	intron	0	NR	5E-6	5.301029995663981		    .12	[0.068-0.166] unit increase	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NR	5q14.1	5	79118514	DMGDH, BHMT2, BHMT	BHMT			635			rs506500-?	rs506500	0	506500	intron	0	NR	8E-12	11.09691001300806	(Conditioned on rs921943)	NR	NR	Illumina [>2.5 million] (Imputed)	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	8q21.2	8	85356084	CA1, CA2, CA3, CA13	CA1			759			rs1532423-A	rs1532423	0	1532423	intron	0	NR	6E-12	11.22184874961635		    .18	[0.13-0.23] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	15q24.2	15	75041843	SCAMP5, PPCDC	PPCDC			60490			rs2120019-C	rs2120019	0	2120019	intron	0	NR	2E-18	17.69897000433602		    .29	[0.22-0.35] unit decrease	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	Xp11.21	23	56785262	KLF8, ZXDA, ZXDB	LOC550643			550643			rs4826508-T	rs4826508	0	4826508	intron	0	NR	1E-12	12		    .21	[0.15-0.27] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	2q23.3	2	153712244	RPRM,GALNT13	RPRM - GALNT13	56475	114805		      233.44	       20.57	rs10931753-?	rs10931753	0	10931753	Intergenic	1	NR	5E-6	5.301029995663981		    .13	[0.074-0.184] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	3q11.2	3	96681755	EPHA6	RPL18AP8 - RCC2P5	644082	100131442		       61.88	       71.43	rs6793516-?	rs6793516	0	6793516	Intergenic	1	NR	5E-6	5.301029995663981		   2.37	[1.36-3.39] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	4p16.2	4	5928306	CRMP1,FLJ46481	C4orf50			389197			rs4333127-?	rs4333127	0	4333127	intron	0	NR	3E-6	5.522878745280337		    .22	[0.13-0.31] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	7p21.2	7	15591246	MEOX2	AGMO - MEOX2	392636	4223		       29.23	       19.97	rs11763353-?	rs11763353	0	11763353	Intergenic	1	NR	7E-7	6.154901959985743		    .19	[0.12-0.27] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	11q14.1	11	81217766	Intergenic	ARL6IP1P3 - MIR4300	729790	100422823		      563.78	      672.98	rs11232535-?	rs11232535	0	11232535	Intergenic	1	NR	7E-7	6.154901959985743		    .33	[0.20-0.45] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	14q23.3	14	65006478	FNTB, MAX	FNTB;MAX;CHURC1-FNTB			2342;4149;100529261			rs7148590-?	rs7148590	0	7148590	intron;intron;intron	0	NR	1E-7	7		    .14	[0.089-0.191] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	14q31.3	14	86350752	FLRT2	FLRT2 - GALC	23768	2581		      722.06	     1487.07	rs10484100-?	rs10484100	0	10484100	Intergenic	1	NR	3E-6	5.522878745280337		    .21	[0.12-0.30] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/20/2013	23720494	Evans DM	05/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23720494	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NR	18q12.3	18	41648346	PIK3C3	KC6 - NPM1P1	641516	4870		      127.75	      140.56	rs9958032-?	rs9958032	0	9958032	Intergenic	1	NR	3E-6	5.522878745280337		   1.47	[0.85-2.08] unit increase	Illumina [>2.5 Million] (imputed) 	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder	300 European ancestry cases, up to 1,538 European ancestry controls, 444 African American cases, up to 2,936 African American controls	207 European ancestry cases, up to 1,692 European ancestry controls, 89 African American cases, up to 655 African American controls	4q32.3	4	165951384	TLL1	TLL1			7092			rs6812849-?	rs6812849	0	6812849	intron	0	NR	3E-9	8.522878745280337	(Whole cohort; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder	300 European ancestry cases, up to 1,538 European ancestry controls, 444 African American cases, up to 2,936 African American controls	207 European ancestry cases, up to 1,692 European ancestry controls, 89 African American cases, up to 655 African American controls	4q32.3	4	165951384	TLL1	TLL1			7092			rs6812849-?	rs6812849	0	6812849	intron	0	NR	1E-6	5.999999999999999	(Trauma Exposed controls; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	7p12.1	7	51938719	COBL	CICP17 - POM121L12	642663	285877		      554.06	     1096.94	rs406001-?	rs406001	0	406001	Intergenic	1	NR	2E-8	7.698970004336018	(Whole cohort; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	4q32.3	4	165951384	TLL1	TLL1			7092			rs6812849-?	rs6812849	0	6812849	intron	0	NR	1E-7	7	(Whole cohort; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	20p12.1	20	16760180	OTOR	OTOR - PCSK2	56914	5126		        8.02	      465.93	rs4491792-?	rs4491792	0	4491792	Intergenic	1	NR	4E-6	5.397940008672037	(Whole cohort; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	8q24.22	8	133258305	NDRG1	NDRG1			10397			rs2272651-?	rs2272651	0	2272651	intron	0	NR	3E-6	5.522878745280337	(Whole cohort; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	9q22.33	9	98490944	GABBR2	GABBR2			9568			rs2779551-?	rs2779551	0	2779551	intron	0	NR	2E-6	5.698970004336018	(Whole cohort; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	10q21.1	10	55789536	MTRNR2L5	GAPDHP21 - ZWINT	389970	11130		      121.12	      567.72	rs16907840-?	rs16907840	0	16907840	Intergenic	1	NR	8E-6	5.096910013008055	(Whole cohort; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	7p12.1	7	51938719	COBL	CICP17 - POM121L12	642663	285877		      554.06	     1096.94	rs406001-?	rs406001	0	406001	Intergenic	1	NR	3E-8	7.522878745280337	(Trauma exposed controls; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	4q32.3	4	165951384	TLL1	TLL1			7092			rs6812849-?	rs6812849	0	6812849	intron	0	NR	5E-7	6.30102999566398	(Trauma exposed controls; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	1q44	1	243852691	AKT3	AKT3			10000			rs4430311-?	rs4430311	0	4430311	nearGene-5	0	NR	6E-6	5.221848749616356	(Trauma exposed controls; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	4q13.1	4	64526494	TECRL	TECRL - MTND5P13	253017	100873272		      117.02	       82.94	rs1425392-?	rs1425392	0	1425392	Intergenic	1	NR	7E-6	5.154901959985742	(Trauma exposed controls; EA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	8q23.3	8	114566078	TRPS1	RPL18P7 - TRPS1	100270945	7227		     1188.79	      842.42	rs7014900-?	rs7014900	0	7014900	Intergenic	1	NR	2E-6	5.698970004336018	(Whole cohort; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	2p13.1	2	74236439	SLC4A5	SLC4A5			57835			rs13006863-?	rs13006863	0	13006863	intron	0	NR	3E-6	5.522878745280337	(Whole cohort; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	14q21.3	14	48957639	RPS29	RPL18P1 - ATP5G2P2	326291	319119		      467.17	      416.27	rs7158872-?	rs7158872	0	7158872	Intergenic	1	NR	2E-6	5.698970004336018	(Whole cohort; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	8q24.21	8	129946705	FAM49B	FAM49B			51571			rs16904179-?	rs16904179	0	16904179	intron	0	NR	7E-7	6.154901959985743	(Whole cohort; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	3q26.32	3	179064233	ZMAT3	ZMAT3			64393			rs4955793-?	rs4955793	0	4955793	intron	0	NR	2E-6	5.698970004336018	(Whole cohort; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	17q24.2	17	66451047	PRKCA	PRKCA			5578			rs7207499-?	rs7207499	0	7207499	intron	0	NR	5E-6	5.301029995663981	(Whole cohort; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	8q23.3	8	114566078	TRPS1	RPL18P7 - TRPS1	100270945	7227		     1188.79	      842.42	rs7014900-?	rs7014900	0	7014900	Intergenic	1	NR	4E-6	5.397940008672037	(Trauma exposed controls; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	14q21.3	14	48957639	RPS29	RPL18P1 - ATP5G2P2	326291	319119		      467.17	      416.27	rs7158872-?	rs7158872	0	7158872	Intergenic	1	NR	3E-6	5.522878745280337	(Trauma exposed controls; AA)	NR	NR	Illumina [up to 871,502]	N
11/14/2013	23726511	Xie P	05/28/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23726511	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NR	10q23.1	10	85848703	GRIN1	GRID1			2894			rs7076096-?	rs7076096	0	7076096	intron	0	NR	5E-6	5.301029995663981	(Trauma exposed controls; AA)	NR	NR	Illumina [up to 871,502]	N
11/20/2013	23708191	Cordell HJ	05/26/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23708191	Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16.	Congenital heart disease	1,479 European ancestry congenital heart disease cases, 340 European ancestry ostium secundum atrial septal defect cases, 5,159 European ancestry controls	417 European ancestry ostium secundum atrial septal defect cases, 209 European ancestry ventricular septal defect cases, 2,520 European ancestry controls	4p16.2	4	4646320	STX18, MSX1, LOC100507266	STX18-AS1			100507266			rs870142-A	rs870142	0	870142	intron	0	0.228	3E-10	9.522878745280336	(ASD)	   1.46	[NR] 	Illumina [514,952]	N
11/20/2013	23708191	Cordell HJ	05/26/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23708191	Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16.	Congenital heart disease	1,479 European ancestry congenital heart disease cases, 340 European ancestry ostium secundum atrial septal defect cases, 5,159 European ancestry controls	417 European ancestry ostium secundum atrial septal defect cases, 209 European ancestry ventricular septal defect cases, 2,520 European ancestry controls	5q11.2	5	51868281	NR	HMGB1P47 - KATNBL1P4	100873897	100128982		      458.08	       62.53	rs12186641-?	rs12186641	0	12186641	Intergenic	1	0.071	7E-6	5.154901959985742	(VSD)	   1.68	[NR] 	Illumina [514,952]	N
11/15/2013	23708190	Hu Z	05/26/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23708190	A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese populations.	Congenital heart malformation	945 Han Chinese ancestry cases, 1,246 Han Chinese ancestry controls	2,160 Han Chinese ancestry cases, 3,866 Han Chinese ancestry controls	1p12	1	118360355	TBX15, SPAG17	RNA5SP56 - PSMC1P12	100873294	644094		       95.87	      253.76	rs2474937-C	rs2474937	0	2474937	Intergenic	1	0.08	8E-10	9.096910013008054		   1.40	[1.26-1.56] 	Illumina [708,275]	N
11/15/2013	23708190	Hu Z	05/26/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23708190	A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese populations.	Congenital heart malformation	945 Han Chinese ancestry cases, 1,246 Han Chinese ancestry controls	2,160 Han Chinese ancestry cases, 3,866 Han Chinese ancestry controls	4q31.1	4	139874173	MAML3	MAML3			55534			rs1531070-A	rs1531070	0	1531070	intron	0	0.11	5E-12	11.30102999566398		   1.40	[1.27-1.54] 	Illumina [708,275]	N
11/15/2013	23719583	Kerns SL	05/26/2013	Radiother Oncol	http://www.ncbi.nlm.nih.gov/pubmed/23719583	Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer.	Adverse response to radiation therapy	79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls	107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls	4q28.3	4	137213427	LOC646316, PCDH18	TERF1P3 - SERF1AP1	646316	100131921		      857.09	       87.58	rs10519410-?	rs10519410	0	10519410	Intergenic	1	0.20	1E-6	5.999999999999999		   1.50	[1.0-2.3] 	Affymetrix [614,453]	N
11/15/2013	23719583	Kerns SL	05/26/2013	Radiother Oncol	http://www.ncbi.nlm.nih.gov/pubmed/23719583	Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer.	Adverse response to radiation therapy	79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls	107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls	7q21.3	7	97388483	ACN9, TAC1	RPL7AP40 - TAC1	442712	6863		      187.01	      343.48	rs10255878-?	rs10255878	0	10255878	Intergenic	1	0.14	4E-6	5.397940008672037		   5.20	[1.9-14.5] 	Affymetrix [614,453]	N
11/15/2013	23719583	Kerns SL	05/26/2013	Radiother Oncol	http://www.ncbi.nlm.nih.gov/pubmed/23719583	Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer.	Adverse response to radiation therapy	79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls	107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls	11q14.3	11	93058934	MTNR1B, SLC36A4	RPL26P31 - SLC36A4	100271469	120103		        6.06	       85.24	rs7120482-?	rs7120482	0	7120482	Intergenic	1	0.29	5E-8	7.30102999566398		   3.10	[1.7-5.6] 	Affymetrix [614,453]	N
11/20/2013	23717212	Band G	05/23/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23717212	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 Afican ancestry controls 	NA	2q32.1	2	184932501	NR	ZNF804A			91752			rs6755404-A	rs6755404	0	6755404	intron	0	NR	1E-6	5.999999999999999		   1.26	[1.15-1.38] 	Illumina [1.3 million] (Imputed)	N
11/20/2013	23717212	Band G	05/23/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23717212	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 Afican ancestry controls 	NA	9q34.2	9	133257367	ABO	ABO			28			rs8176722-A	rs8176722	0	8176722	intron	0	NR	9E-10	9.045757490560675		   1.28	[1.19-1.39] 	Illumina [1.3 million] (Imputed)	N
11/20/2013	23717212	Band G	05/23/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23717212	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 Afican ancestry controls 	NA	11p15.4	11	4769345	HBB	OR51F1			256892			rs12788102-A	rs12788102	0	12788102	cds-synon	0	NR	2E-16	15.69897000433602		   2.15	[1.79-2.59] 	Illumina [1.3 million] (Imputed)	N
11/20/2013	23717212	Band G	05/23/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23717212	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 Afican ancestry controls 	NA	11q23.1	11	110870290	NR	HNRNPA1P60 - RPS17P15	120364	100271363		       81.22	      235.28	rs1469170-A	rs1469170	0	1469170	Intergenic	1	NR	8E-8	7.096910013008055		   1.20	[1.12-1.29] 	Illumina [1.3 million] (Imputed)	N
11/20/2013	23717212	Band G	05/23/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23717212	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 Afican ancestry controls 	NA	14q13.3	14	36384931	NR	DPPA3P2 - SFTA3	400206	253970		       12.56	       88.36	rs12590640-T	rs12590640	0	12590640	Intergenic	1	NR	4E-6	5.397940008672037		   1.15	[1.09-1.23] 	Illumina [1.3 million] (Imputed)	N
11/20/2013	23717212	Band G	05/23/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23717212	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 Afican ancestry controls 	NA	16q23.3	16	83327170	NR	CDH13			1012			rs9940464-T	rs9940464	0	9940464	intron	0	NR	5E-7	6.30102999566398		   1.17	[1.10-1.25] 	Illumina [1.3 million] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		2q35	2	216998758	NA	TNP1 - DIRC3	7141	729582		      138.70	      285.27	rs10932688-G	rs10932688	0	10932688	Intergenic	1	NR	3E-8	7.522878745280337		    .14	[0.092-0.194] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		7q32.1	7	128775141	CALU, OPN1SW	OPN1SW			611			rs1799922-T	rs1799922	0	1799922	cds-synon	0	NR	4E-9	8.397940008672036		    .14	[0.097-0.191] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		10p12.33	10	18153553	CACNB2	CACNB2			783			rs10740993-C	rs10740993	0	10740993	intron	0	NR	2E-9	8.698970004336019		    .14	[0.096-0.186] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		10q22.2	10	74536031	ADK, VCL, AP3M1	ADK			132			rs7924176-A	rs7924176	0	7924176	intron	0	NR	8E-16	15.09691001300805		    .19	[0.15-0.24] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		12q14.3	12	65368278	MSRB3	MSRB3			253827			rs12229918-C	rs12229918	0	12229918	intron	0	NR	2E-9	8.698970004336019		    .15	[0.1-0.198] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		12q14.3	12	65944422	HMGA2	HMGA2			8091			rs17101923-G	rs17101923	0	17101923	intron	0	NR	1E-10	10		    .18	[0.13-0.24] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		13q14.3	13	50816462	DLEU7	DLEU7;DLEU7-AS1			220107;100874074			rs9316505-A	rs9316505	0	9316505	intron;intron	0	NR	3E-8	7.522878745280337		    .13	[0.086-0.18] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		14q11.2	14	22995273	AJUBA, C14orf93	C14orf93			60686			rs997154-G	rs997154	0	997154	intron	0	NR	3E-8	7.522878745280337		    .15	[0.097-0.203] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		17q21.32	17	49003069	IGF2BP1	IGF2BP1			10642			rs1994969-T	rs1994969	0	1994969	intron	0	NR	7E-16	15.15490195998574		    .19	[0.14-0.24] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		17q24.3	17	70189445	KCNJ2, KCNJ16	KCNJ2 - CALM2P1	3759	100128390		        9.40	       51.80	rs8080944-A	rs8080944	0	8080944	Intergenic	1	NR	2E-19	18.69897000433602		    .22	[0.17-0.27] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		Xq13.1	23	69578860	FAM155E, EDA	FAM155B - EDA	27112	1896		       46.35	       37.21	rs11796357-G	rs11796357	0	11796357	Intergenic	1	NR	7E-19	18.15490195998574		    .20	[0.16-0.24] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		6q21	6	105740943	NA	RPL35P3 - PRDM1	728010	639		      438.08	      345.38	rs6568401-C	rs6568401	0	6568401	Intergenic	1	NR	2E-10	9.698970004336017		    .19	[0.13-0.25] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		7q32.1	7	128775141	CALU, OPN1SW	OPN1SW			611			rs1799922-T	rs1799922	0	1799922	cds-synon	0	NR	9E-7	6.045757490560675		    .14	[0.083-0.197] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		10p12.33	10	18153553	CACNB2	CACNB2			783			rs10740993-C	rs10740993	0	10740993	intron	0	NR	2E-7	6.698970004336019		    .14	[0.088-0.194] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		10q22.2	10	74536031	ADK, VCL, AP3M1	ADK			132			rs7924176-A	rs7924176	0	7924176	intron	0	NR	2E-8	7.698970004336018		    .17	[0.11-0.22] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		11q24.2	11	125956807	CDON	CDON			50937			rs4937076-A	rs4937076	0	4937076	nearGene-3	0	NR	4E-8	7.397940008672037		    .15	[0.097-0.203] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		12q14.3	12	65368278	MSRB3	MSRB3			253827			rs12229918-C	rs12229918	0	12229918	intron	0	NR	7E-14	13.15490195998574		    .22	[0.16-0.27] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		12q14.3	12	65944422	HMGA2	HMGA2			8091			rs17101923-G	rs17101923	0	17101923	intron	0	NR	6E-11	10.22184874961635		    .21	[0.15-0.28] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		14q11.2	14	22995273	AJUBA, C14orf93	C14orf93			60686			rs997154-G	rs997154	0	997154	intron	0	NR	7E-6	5.154901959985742		    .14	[0.077-0.199] unit increase	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		14q22.2	14	53950804	BMP4	BMP4			652			rs17563-G	rs17563	0	17563	missense	0	NR	9E-17	16.04575749056067		    .24	[0.18-0.3] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		17q21.32	17	49003069	IGF2BP1	IGF2BP1			10642			rs1994969-T	rs1994969	0	1994969	intron	0	NR	2E-14	13.69897000433602		    .03	[-0.02592-0.07992] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		17q22	17	58631697	TEX14, RAD51C	TEX14			56155			rs412000-C	rs412000	0	412000	intron	0	NR	2E-9	8.698970004336019		    .16	[0.11-0.22] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		17q24.3	17	70189445	KCNJ2, KCNJ16	KCNJ2 - CALM2P1	3759	100128390		        9.40	       51.80	rs8080944-A	rs8080944	0	8080944	Intergenic	1	NR	8E-34	33.09691001300805		    .34	[0.29-0.4] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704328	Fatemifar G	05/23/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23704328	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		Xq13.1	23	69578860	FAM155E, EDA	FAM155B - EDA	27112	1896		       46.35	       37.21	rs11796357-G	rs11796357	0	11796357	Intergenic	1	NR	3E-22	21.52287874528033		    .25	[0.2-0.3] unit decrease	Illumina [2,446,724] (Imputed)	N
11/15/2013	23704207	Wu X	05/23/2013	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23704207	Genome-wide association study of genetic predictors of overall survival for non-small cell lung cancer in never smokers.	Non-small cell lung cancer (survival)	620 European ancestry never smoker cases	1,256 Chinese ancestry never smoker cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
11/15/2013	23746317	Yamaguchi T	05/23/2013	Oral Dis	http://www.ncbi.nlm.nih.gov/pubmed/23746317	Genome-wide association study of degenerative bony changes of the temporomandibular joint.	Temporomandibular joint disorders	146 East Asian ancestry cases, 374 East Asian ancestry controls		12p13.33	12	3178113	TSPAN9	TSPAN9			10867			rs878962-C	rs878962	0	878962	intron	0	NR	8E-6	5.096910013008055		   1.89	[1.43-2.50] 	Illumina [532,935]	N
11/15/2013	23698163	Gong J	05/21/2013	Nutrients	http://www.ncbi.nlm.nih.gov/pubmed/23698163	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	4q34.3	4	177397037	AGA	NEIL3 - AGA	55247	175		       34.10	       33.74	rs1395479-A	rs1395479	0	1395479	Intergenic	1	0.27	3E-7	6.522878745280337		    .04	[0.027-0.059] mg/dL increase	Illumina [2,474,333]	N
11/15/2013	23698163	Gong J	05/21/2013	Nutrients	http://www.ncbi.nlm.nih.gov/pubmed/23698163	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	17q24.3	17	72717400	SLC39A11	SLC39A11			201266			rs891684-A	rs891684	0	891684	intron	0	0.05	4E-7	6.397940008672037		    .09	[0.058-0.128] mg/dL decrease	Illumina [2,474,333]	N
11/15/2013	23698163	Gong J	05/21/2013	Nutrients	http://www.ncbi.nlm.nih.gov/pubmed/23698163	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	1q43	1	238506476	NA	KRT18P32 - MIPEPP2	391179	100130099		       13.78	      270.65	rs6692700-?	rs6692700	0	6692700	Intergenic	1	NR	2E-6	5.698970004336018		    .04	[0.024-0.056] mg/dL increase	Illumina [2,474,333]	N
11/15/2013	23698163	Gong J	05/21/2013	Nutrients	http://www.ncbi.nlm.nih.gov/pubmed/23698163	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	8p23.2	8	4120608	CSMD1	CSMD1			64478			rs4875284-?	rs4875284	0	4875284	intron	0	NR	3E-6	5.522878745280337		    .20	[0.12-0.29] mg/dL decrease	Illumina [2,474,333]	N
11/13/2013	23696099	Ding K	05/20/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/23696099	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	11p15.4	11	5209677	NA	OR51V1 - HBB	283111	3043		        8.98	       15.79	rs7120391-C	rs7120391	0	7120391	Intergenic	1	0.12	5E-9	8.301029995663981	(MCHC)	    .30	[0.20-0.40] unit increase	Illumina [907,954]	N
11/13/2013	23696099	Ding K	05/20/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/23696099	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	16p13.3	16	264781	ITFG3	ITFG3			83986			rs9924561-T	rs9924561	0	9924561	intron	0	0.10	5E-29	28.30102999566398	(MCV)	   3.57	[2.94-4.20] fL decrease	Illumina [907,954]	N
11/13/2013	23696099	Ding K	05/20/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/23696099	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	16p13.3	16	264781	ITFG3	ITFG3			83986			rs9924561-T	rs9924561	0	9924561	intron	0	0.10	8E-36	35.09691001300806	(MCH)	   1.56	[1.32-1.80] pg decrease	Illumina [907,954]	N
11/13/2013	23696099	Ding K	05/20/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/23696099	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	16p13.3	16	264781	ITFG3	ITFG3			83986			rs9924561-T	rs9924561	0	9924561	intron	0	0.10	9E-17	16.04575749056067	(MCHC)	    .47	[0.35-0.59] unit decrease	Illumina [907,954]	N
11/13/2013	23696099	Ding K	05/20/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/23696099	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	Xq28	23	154536002	G6PD	G6PD			2539			rs1050828-A	rs1050828	0	1050828	missense	0	0.12	4E-13	12.39794000867204	(RBC count)	    .20	[0.14-0.26] x10^12/L decrease	Illumina [907,954]	N
11/13/2013	23696099	Ding K	05/20/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/23696099	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	Xq28	23	154536002	G6PD	G6PD			2539			rs1050828-A	rs1050828	0	1050828	missense	0	0.12	1E-14	14	(MCV)	   2.46	[1.83-3.09] fL increase	Illumina [907,954]	N
11/13/2013	23696099	Ding K	05/20/2013	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/23696099	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	Xq28	23	154536002	G6PD	G6PD			2539			rs1050828-A	rs1050828	0	1050828	missense	0	0.12	9E-9	8.045757490560675	(MCH)	    .72	[0.48-0.96] pg increase	Illumina [907,954]	N
11/14/2013	23677057	Kim JJ	05/16/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23677057	Identification of KCNN2 as a susceptibility locus for coronary artery aneurysms in Kawasaki disease using genome-wide association analysis.	Coronary arterial lesions in patients with Kawasaki disease	17 Korean ancestry cases, 123 Korean ancestry controls	32 Korean ancestry cases, 191 Korean ancestry controls	5q22.3	5	114463289	KCNN2	KCNN2;LOC101927078			3781;101927078			rs17136627-A	rs17136627	0	17136627	intron;intron	0	0.008	2E-8	7.698970004336018		  12.60	[4.13-38.5] 	Affymetrix [652,397]	N
10/30/2013	23670970	Blackman SM	05/13/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23670970 	Genetic modifiers of cystic fibrosis-related diabetes.	Cystic fibrosis-related diabetes	644 cystic fibrosis-related diabetes cases, 2,415 cystic fibrosis controls	124 cystic fibrosis-related diabetes cases, 570 cystic fibrosis controls	1q32.1	1	205945629	SLC26A9	SLC26A9 - RAB7B	115019	338382		        2.17	       31.11	rs4077468-A	rs4077468	0	4077468	Intergenic	1	0.58	1E-9	8.999999999999998		   1.39	[1.25-1.54] 	Illumina [549,869]	N
10/31/2013	23668334	Shan J	05/13/2013	J Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/23668334 	Genome scan study of prostate cancer in Arabs: identification of three genomic regions with multiple prostate cancer susceptibility loci in Tunisians.	Prostate cancer	90 Tunisian ancestry cases, 131 Tunisian ancestry controls	155 Arab ancestry cases, 182 Arab ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [534,781]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	17q22	17	58555182	C17orf47,TEX14, PPM1E, RAD51C, SEPT4, TRIM37, SKA2	LOC101927688			101927688			rs9905704-T	rs9905704	0	9905704	intron	0	0.68	4E-13	12.39794000867204		   1.27	[1.18-1.33] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	7p22.3	7	1929317	MAD1L1	MAD1L1			8379			rs12699477-C	rs12699477	0	12699477	intron	0	0.38	6E-9	8.221848749616356		   1.21	[1.14-1.29] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	16q23.1	16	74636560	RFWD3, GLG1, MLKL	RFWD3			55159			rs4888262-C	rs4888262	0	4888262	cds-synon	0	0.458	5E-12	11.30102999566398		   1.26	[1.18-1.34] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	4q22.3	4	94303661	HPGDS, SMARCAD1	HPGDS			27306			rs17021463-T	rs17021463	0	17021463	intron	0	0.42	1E-8	8		   1.19	[1.12-1.26] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	16q12.1	16	50109033	HEATR3	RNY4P3 - RPL10P14	6089	390729		       10.68	       42.19	rs8046148-?	rs8046148	0	8046148	Intergenic	1	NR	3E-6	5.522878745280337		   1.20	[1.11-1.30] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	18q21.1	18	49583323	LIPG	LIPG			9388			rs9951026-?	rs9951026	0	9951026	intron	0	NR	5E-6	5.301029995663981		   1.22	[1.12-1.33] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	1q24.1	1	165862412	UCK2	UCK2			7371			rs4657482-A	rs4657482	0	4657482	intron	0	NR	6E-6	5.221848749616356		   1.43	[1.22-1.67] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	5q31.3	5	142302223	SPRY4	NDFIP1 - SPRY4	80762	81848		      147.78	        8.20	rs4624820-G	rs4624820	0	4624820	Intergenic	1	NR	8E-10	9.096910013008054		   1.64	[1.39-1.89] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	6p21.31	6	33574761	BAK1	BAK1			578			rs210138-G	rs210138	0	210138	intron	0	NR	3E-7	6.522878745280337		   1.62	[1.35-1.95] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	12q21.32	12	88496894	KITLG	KITLG			4254			rs995030-A	rs995030	0	995030	UTR-3	0	NR	3E-13	12.52287874528034		   2.33	[1.85-2.94] 	Illumina [NR]	N
11/07/2013	23666239	Chung CC	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666239 	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	9p24.3	9	863635	DMRT1	DMRT1			1761			rs755383-C	rs755383	0	755383	intron	0	NR	4E-7	6.397940008672037		   1.52	[1.3-1.79] 	Illumina [NR]	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	2p25.3	2	629244	TMEM18	FAM150B - TMEM18	285016	129787		      340.38	       38.73	rs12463617-A	rs12463617	0	12463617	Intergenic	1	0.15	3E-17	16.52287874528034		    .10	[0.076-0.124] unit decrease	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	20p12.3	20	6629230	BMP2	CASC20 - BMP2	101929244	650		      100.77	      138.87	rs6107853-A	rs6107853	0	6107853	Intergenic	1	0.45	2E-6	5.698970004336018		    .04	[0.022-0.058] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1p36.13	1	18663757	PAX7	PAX7			5081			rs2236835-A	rs2236835	0	2236835	intron	0	0.04	8E-6	5.096910013008055		    .13	[0.071-0.185] unit decrease	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	2p23.3	2	25146133	POMC	EFR3B			22979			rs1561288-T	rs1561288	0	1561288	intron	0	0.22	5E-8	7.30102999566398		    .06	[0.035-0.075] unit decrease	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	14q12	14	30045906	PRKD1	PRKD1 - RPS6P24	5587	100128358		      118.21	        9.26	rs11847697-T	rs11847697	0	11847697	Intergenic	1	0.04	2E-6	5.698970004336018		    .11	[0.062-0.152] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	4p12	4	45173674	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      228.68	      149.58	rs13130484-T	rs13130484	0	13130484	Intergenic	1	0.43	6E-9	8.221848749616356		    .05	[0.032-0.068] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	16q12.2	16	53766842	FTO	FTO			79068			rs9940128-A	rs9940128	0	9940128	intron	0	0.44	4E-23	22.39794000867203		    .08	[0.067-0.099] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1p31.1	1	72372723	NEGR1	RPL31P12 - KRT8P21	100270887	126811		       70.85	      732.06	rs10789336-A	rs10789336	0	10789336	Intergenic	1	0.62	1E-6	5.999999999999999		    .04	[0.024-0.060] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1p31.1	1	74525960	TNNI3K	TNNI3K;FPGT-TNNI3K			51086;100526835			rs1514175-A	rs1514175	0	1514175	intron;intron	0	0.43	3E-11	10.52287874528034		    .06	[0.042-0.078] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	6q14.1	6	79823470	ELOVL4	C6orf7			89758			rs1321847-A	rs1321847	0	1321847	intron	0	0.09	2E-6	5.698970004336018		    .07	[0.041-0.099] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	14q32.13	14	94628060	SERPINA3	SERPINA3 - ADIPOR1P2	12	390503		        4.01	        5.61	rs8005845-T	rs8005845	0	8005845	Intergenic	1	0.73	5E-6	5.301029995663981		    .05	[0.027-0.067] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	5q23.2	5	125011395	ZNF608	RPL28P3 - HMGB1P22	391828	644659		      202.16	      253.87	rs3936060-C	rs3936060	0	3936060	Intergenic	1	0.81	5E-6	5.301029995663981		    .05	[0.027-0.071] unit decrease	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1q25.2	1	177920345	SEC16B	BRINP2 - SEC16B	57795	89866		      637.92	        8.76	rs543874-G	rs543874	0	543874	Intergenic	1	0.19	4E-11	10.39794000867204		    .08	[0.059-0.103] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
11/03/2013	23669352	Graff M	05/12/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23669352	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	18q21.32	18	60067625	PMAIP1, MC4R	FAM60CP - RPS3AP49	728115	400652		       50.06	       81.92	rs723486-T	rs7234864	0	7234864	Intergenic	1	0.26	4E-17	16.39794000867203		    .08	[0.061-0.101] unit increase	Illumina & Affymetrix [557,887] (imputed)	N
09/27/2013	23666238	Kou I	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666238 	Genetic variants in GPR126 are associated with adolescent idiopathic scoliosis.	Scoliosis	1,033 Japanese ancestry cases, 1,473 Japanese ancestry controls	786 Japanese ancestry cases, 24,466 Japanese ancestry controls, 743 Han Chinese ancestry cases, 1,209 Han Chinese ancestry controls, 447 European ancestry cases, 737 European ancestry controls	6q24.1	6	142358435	GPR126	GPR126			57211			rs6570507-?	rs6570507	0	6570507	intron	0	0.43	1E-14	14		   1.27	[1.20-1.35] 	Illumina [465,762] 	N
09/27/2013	23666238	Kou I	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666238 	Genetic variants in GPR126 are associated with adolescent idiopathic scoliosis.	Scoliosis	1,033 Japanese ancestry cases, 1,473 Japanese ancestry controls	786 Japanese ancestry cases, 24,466 Japanese ancestry controls, 743 Han Chinese ancestry cases, 1,209 Han Chinese ancestry controls, 447 European ancestry cases, 737 European ancestry controls	6q24.1	6	142358435	GPR126	GPR126			57211			rs6570507-?	rs6570507	0	6570507	intron	0	0.43	4E-12	11.39794000867204	(East Asian)	   1.26	[1.18-1.35] 	Illumina [465,762] 	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	1q22	1	156199819	SLC25A44	SLC25A44			9673			rs2072499-G	rs2072499	0	2072499	intron	0	0.35	3E-8	7.522878745280337		   1.19	[1.08-1.30] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	1q24.1	1	165904155	UCK2	UCK2			7371			rs3790672-C	rs3790672	0	3790672	intron	0	0.28	2E-8	7.698970004336018		   1.20	[1.09-1.33] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	3p24.3	3	16583541	DAZL	LINC00690 - DAZL	100996597	1618		       42.17	        3.25	rs10510452-A	rs10510452	0	10510452	Intergenic	1	0.69	1E-8	8		   1.24	[1.12-1.37] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	4q24	4	103133529	CENPE	CENPE			1062			rs2720460-A	rs2720460	0	2720460	intron	0	0.61	2E-10	9.698970004336017		   1.24	[1.12-1.36] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	5q31.1	5	135030510	CATSPER3,PITX1	PITX1			5307			rs3805663-T	rs3805663	0	3805663	intron	0	0.63	2E-8	7.698970004336018		   1.25	[1.13-1.38] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	8q13.3	8	70064270	PRDM14	PRDM14			63978			rs7010162-G	rs7010162	0	7010162	intron	0	0.61	5E-8	7.30102999566398		   1.22	[1.11-1.34] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	16q12.1	16	50109033	HEATR3	RNY4P3 - RPL10P14	6089	390729		       10.68	       42.19	rs8046148-G	rs8046148	0	8046148	Intergenic	1	0.79	4E-9	8.397940008672036		   1.32	[1.17-1.48] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	17q22	17	58555182	RAD51C,TEX14	LOC101927688			101927688			rs9905704-T	rs9905704	0	9905704	intron	0	0.67	3E-9	8.522878745280337		   1.21	[1.10-1.34] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	21q22.3	21	46270154	MCM3AP	MCM3AP			8888			rs2839186-T	rs2839186	0	2839186	intron	0	0.46	1E-9	8.999999999999998		   1.26	[1.15-1.38] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	5p15.33	5	1308437	TERT,CLPTM1L	TERT - MIR4457	7015	100616235		       13.39	         .87	rs4635969-T	rs4635969	0	4635969	Intergenic	1	0.2	5E-24	23.30102999566398		   1.39	[1.25-1.54] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	5q31.3	5	142302223	SPRY4	NDFIP1 - SPRY4	80762	81848		      147.78	        8.20	rs4624820-A	rs4624820	0	4624820	Intergenic	1	0.54	3E-31	30.52287874528034		   1.52	[1.38-1.67] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	6p21.31	6	33574761	BAK1	BAK1			578			rs210138-G	rs210138	0	210138	intron	0	0.19	2E-24	23.69897000433602		   1.44	[1.30-1.61] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	9p24.3	9	863635	DMRT1	DMRT1			1761			rs755383-T	rs755383	0	755383	intron	0	0.63	2E-26	25.69897000433602		   1.38	[1.25-1.52] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	12p13.1	12	14500933	ATF7IP	ATF7IP			55729			rs2900333-C	rs2900333	0	2900333	UTR-3	0	0.62	1E-13	13		   1.32	[1.20-1.46] 	Illumina [307,291]	N
11/09/2013	23666240	Ruark E	05/12/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23666240 	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	12q21.32	12	88496894	KITLG	KITLG			4254			rs995030-G	rs995030	0	995030	UTR-3	0	0.8	2E-50	49.69897000433602		   2.26	[1.95-2.61] 	Illumina [307,291]	N
09/27/2013	23661040	Liao M	05/10/2013	Immunogenetics	http://www.ncbi.nlm.nih.gov/pubmed/23661040 	Genome-wide scan on total serum IgE levels identifies no common variants in a healthy Chinese male population.	IgE levels 	1,999 Han Chinese ancestry men 	996 Han Chinese ancestry men, 500 Zhuang Chinese ancestry men	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [1,940,243] (Imputed)	N
09/28/2013	23665963	Dubinsky MC	05/09/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23665963 	Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn's disease.	Crohn's disease (need for surgery)	239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years	NR	9q34.3	9	134614732	RXRA, COL5A1	MIR4669 - COL5A1	100616236	1289		      235.26	       27.07	rs11103429-G	rs11103429	0	11103429	Intergenic	1	0.05	6E-6	5.221848749616356		   3.60	[2.10-6.30] 	Illumina [483,359]	N
09/28/2013	23665963	Dubinsky MC	05/09/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23665963 	Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn's disease.	Crohn's disease (need for surgery)	239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years	NR	7q21.11	7	82210237	CACNA2D1	CACNA2D1			781			rs11978472-?	rs11978472	0	11978472	intron	0	0.70	6E-6	5.221848749616356		   2.00	[1.43-2.50] 	Illumina [483,359]	N
09/28/2013	23665963	Dubinsky MC	05/09/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23665963 	Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn's disease.	Crohn's disease (time to surgery)	983 European ancestry cases	NR	16q23.1	16	75133681	ZNRF1, LDHD, ZHP1, BCAR1, CTRB1/2	LOC102723987			102723987			rs7195303-G	rs7195303	0	7195303	intron	0	NR	9E-6	5.045757490560675		   2.10	[1.5-2.8] 	Illumina [484,724]	N
11/06/2013	23658558	Bae HT	05/08/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/23658558 	Genome-wide association study of personality traits in the long life family study.	Personality dimensions	Up to 2,631 European ancestry individuals	up to 1,287 European ancestry individuals, 1,084 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to ~ 40,045,518] (Imputed)	N
11/06/2013	23658558	Bae HT	05/08/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/23658558 	Genome-wide association study of personality traits in the long life family study.	Personality dimensions	Up to 4,595 European ancestry individuals	1,045 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to ~ 40,038,518] (Imputed)	N
09/26/2013	23652523	Mayerle J	05/08/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23652523	Identification of genetic loci associated with Helicobacter pylori serologic status.	Helicobacter pylori serologic status	2,623 European ancestry high titer cases, 7,862 European ancestry low or no titer controls	NR	4p14	4	38783103	TLR10,TLR1,FAM114A1,TLR6,KLF3	TLR10			81793			rs10004195-A	rs10004195	0	10004195	nearGene-5	0	0.75	1E-18	18		   1.43	[1.32-1.54] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/26/2013	23652523	Mayerle J	05/08/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23652523	Identification of genetic loci associated with Helicobacter pylori serologic status.	Helicobacter pylori serologic status	2,623 European ancestry high titer cases, 7,862 European ancestry low or no titer controls	NR	1q23.3	1	161514420	FCGR2A,HSPA6	FCGR2A			2212			rs368433-C	rs368433	0	368433	intron	0	0.84	2E-8	7.698970004336018		   1.37	[1.23-1.54] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		6q16.3	6	104995314	LIN28B	LIN28B			389421			rs364663-A	rs364663	0	364663	intron	0	0.72	5E-7	6.30102999566398		    .09	[0.054-0.124] year decrease	Illumina [2,310,762] (Imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		11q24.2	11	126737685	KIRREL3	KIRREL3			84623			rs7114000-A	rs7114000	0	7114000	intron	0	0.06837	2E-6	5.698970004336018		    .15	[0.088-0.212] year increase	Illumina [2,310,762] (Imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		16q23.2	16	81440044	CMIP	MIR4720 - CMIP	100616150	80790		       54.95	        5.13	rs310008-G	rs310008	0	310008	Intergenic	1	0.13392	4E-6	5.397940008672037		    .11	[0.062-0.153] year decrease	Illumina [2,310,762] (Imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		2q37.2	2	235630663	AGAP1	AGAP1			116987			rs6431393-A	rs6431393	0	6431393	intron	0	0.4948	4E-6	5.397940008672037		    .08	[0.045-0.111] year increase	Illumina [2,310,762] (Imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		8q21.11	8	76699390	ZFHX4	ZFHX4			79776			rs4735738-A	rs4735738	0	4735738	intron	0	0.49918	5E-6	5.301029995663981		    .07	[0.042-0.104] year increase	Illumina [2,310,762] (Imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		14q13.3	14	36520214	NKX2-1	NKX2-1;NKX2-1-AS1			7080;100506237			rs2076751-A	rs2076751	0	2076751	UTR-5;intron	0	0.23377	7E-6	5.154901959985742		    .09	[0.049-0.125] year decrease	Illumina [2,310,762] (Imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		11q22.1	11	100535909	ARHGAP42	RPA2P3 - ARHGAP42	100420359	143872		      198.29	      151.77	rs12800752-T	rs12800752	0	12800752	Intergenic	1	0.80147	3E-6	5.522878745280337		    .09	[0.055-0.134] year increase	Illumina [2,310,762] (Imputed)	N
09/21/2013	23667675	Tanikawa C	05/07/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23667675 	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry female individuals		11p15.2	11	15435921	INSC	INSC - SOX6	387755	55553		      188.71	      530.53	rs7114467-A	rs7114467	0	7114467	Intergenic	1	0.45957	9E-6	5.045757490560675		    .07	[0.040-0.103] year decrease	Illumina [2,310,762] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	1q24.2	1	169511985	F5	F5			2153			rs6427196-C	rs6427196	0	6427196	UTR-3	0	0.93	4E-51	50.39794000867204		   2.07	[1.89-2.28] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	9q34.2	9	133261662	ABO	ABO			28			rs687621-G	rs687621	0	687621	intron	0	0.65	2E-52	51.69897000433601		   1.55	[1.47-1.64] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	4q35.2	4	186266940	F11	F11			2160			rs4253399-G	rs4253399	0	4253399	intron	0	0.61	3E-14	13.52287874528034		   1.24	[1.17-1.31] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	4q31.3	4	154622217	FGG	FGG - LRAT	2266	9227		        9.47	        4.74	rs6536024-C	rs6536024	0	6536024	Intergenic	1	0.42	2E-13	12.69897000433602		   1.25	[1.18-1.32] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	3p26.3	3	1004354	CNTN6	RPSAP32 - CNTN6	402123	27255		      386.00	       88.30	rs6764623-C	rs6764623	0	6764623	Intergenic	1	0.74	2E-6	5.698970004336018		   1.18	[1.10-1.26] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	9q31.3	9	112060841	SUSD1	SUSD1			64420			rs4979078-C	rs4979078	0	4979078	intron	0	0.86	3E-6	5.522878745280337		   1.21	[1.11-1.30] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	15q13.3	15	31501727	OTUD7A	OTUD7A			161725			rs7164569-A	rs7164569	0	7164569	cds-synon	0	0.36	3E-6	5.522878745280337		   1.15	[1.09-1.23] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/21/2013	23650146	Tang W	05/05/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23650146	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	5q13.3	5	76326989	SV2C	SV2C			22987			rs3733860-A	rs3733860	0	3733860	intron	0	0.87	8E-6	5.096910013008055		   1.19	[1.10-1.29] 	Illumina & Affymetrix [2,543,885] (Imputed)	N
09/20/2013	23644492	Wu C	05/05/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23644492	Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma.	Esophageal squamous cell cancer (length of survival)	1,331 Chinese ancestry cases	1,062 Chinese ancestry individuals	18q12.2	18	36114157	SLC39A6	SLC39A6			25800			rs1050631-T	rs1050631	0	1050631	cds-synon	0	0.18	4E-8	7.397940008672037		   1.30	[1.19-1.43] 	Affymetrix [665,999] 	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	2q36.1	2	224078968	SERPINE2	SERPINE2 - FAM124B	5270	79843		       39.65	      299.73	rs6740660-G	rs6740660	0	6740660	Intergenic	1	0.894	4E-6	5.397940008672037	(Allelic model)	   3.39	[1.87-6.131] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	4p14	4	36025125	LOC651644	LOC101928667			101928667			rs1567482-G	rs1567482	0	1567482	intron	0	0.875	6E-6	5.221848749616356	(Allelic model)	   2.85	[1.716-4.719] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	7p21.3	7	12673445	LOC100505995	SCIN - ARL4A	85477	10124		       19.84	       13.38	rs10488226-A	rs10488226	0	10488226	Intergenic	1	0.107	3E-6	5.522878745280337	(Dominant model)	   2.03	[1.50-2.737] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	2q32.3	2	191600872	OBFC2A	MYO1B - NABP1	4430	64859		      175.48	       77.20	rs6706693-A	rs6706693	0	6706693	Intergenic	1	0.219	9E-6	5.045757490560675	(Recessive model)	   1.74	[1.362-2.232] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	12p13.31	12	6332835	TNFRSF1A	TNFRSF1A			7132			rs4149639-C	rs4149639	0	4149639	intron	0	0.047	7E-6	5.154901959985742	(Allelic model)	   2.76	[1.781-4.287] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	19p12	19	20218302	LOC100421704	ZNF486 - BNIP3P17	90649	100421704		       17.81	        3.58	rs1654260-A	rs1654260	0	1654260	Intergenic	1	0.488	8E-6	5.096910013008055	(Allelic model)	   1.75	[1.365-2.24] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	6q16.1	6	98048076	MIR2113	MIR2113 - EIF4EBP2P3	100302164	100190924		       23.46	      130.58	rs2505059-G	rs2505059	0	2505059	Intergenic	1	0.398	5E-6	5.301029995663981	(Allelic model)	   1.77	[1.383-2.252] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	2q33.1	2	199773786	LOC348751	FTCDNL1			348751			rs12615435-T	rs12615435	0	12615435	intron	0	0.773	4E-6	5.397940008672037	(Allelic model)	   2.21	[1.555-3.154] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	5q33.3	5	158997383	EBF1	EBF1			1879			rs10040979-G	rs10040979	0	10040979	intron	0	0.618	5E-7	6.30102999566398	(Recessive model)	   1.45	[1.12-1.883] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	1p31.3	1	68168241	LOC100289178	WLS;GNG12-AS1			79971;100289178			rs1367448-C	rs1367448	0	1367448	intron;intron	0	0.526	5E-6	5.301029995663981	(Dominant model)	   1.55	[1.212-1.993] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	18p11.31	18	4539085	LOC284215	DLGAP1-AS5 - PPIAP14	284215	5486		      243.09	      463.43	rs7228133-C	rs7228133	0	7228133	Intergenic	1	0.686	2E-6	5.698970004336018	(Recessive model)	   1.26	[1.034-1.522] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	21q21.3	21	25454202	NCRNA00158	LINC00158 - MIR155HG	54072	114614		       22.50	      107.94	rs8127977-A	rs8127977	0	8127977	Intergenic	1	0.722	2E-6	5.698970004336018	(Dominant model)	   1.59	[1.282-1.966] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	12q13.13	12	53925943	HOXC13	CISTR - HOXC13-AS	102216268	100874366		      168.91	        9.39	rs894734-G	rs894734	0	894734	Intergenic	1	0.776	4E-6	5.397940008672037	(Dominant model)	   1.62	[1.279-2.05] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	13q12.11	13	22179954	LOC100506622	MTND3P1 - LINC00540	100873208	100506622		       66.62	       30.33	rs9580312-G	rs9580312	0	9580312	Intergenic	1	0.409	8E-6	5.096910013008055	(Dominant model)	   1.33	[1.12-1.581] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	21q21.1	21	18109036	CHODL	CHODL			140578			rs2055011-C	rs2055011	0	2055011	intron	0	0.143	9E-6	5.045757490560675	(Recessive model)	   1.35	[1.075-1.686] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	12q24.31	12	124409638	NCOR2	NCOR2			9612			rs12582168-C	rs12582168	0	12582168	intron	0	0.256	9E-6	5.045757490560675	(Dominant model)	   1.45	[1.21-1.748] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	6q14.1	6	76556471	LOC100131680	IMPG1 - HTR1B	3617	3351		      483.79	      905.76	rs4235898-A	rs4235898	0	4235898	Intergenic	1	0.74	1E-6	5.999999999999999	(Allelic model)	   1.72	[1.377-2.142] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	14q31.3	14	86435710	LOC100421119	FLRT2 - GALC	23768	2581		      807.01	     1402.11	rs12882718-T	rs12882718	0	12882718	Intergenic	1	0.643	6E-6	5.221848749616356	(Dominant model)	   1.56	[1.283-1.884] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	6q21	6	105881180	PRDM1	RPL35P3 - PRDM1	728010	639		      578.32	      205.14	rs9386485-T	rs9386485	0	9386485	Intergenic	1	0.492	3E-6	5.522878745280337	(Allelic model)	   1.52	[1.279-1.817] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	4q31.3	4	153453832	KIAA0922	MND1 - KIAA0922	84057	23240		       38.74	       12.51	rs6817170-G	rs6817170	0	6817170	Intergenic	1	0.286	9E-6	5.045757490560675	(Allelic model)	   1.52	[1.264-1.822] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	2q32.3	2	195501166	LOC391470	HNRNPA1P47 - AHCYP5	100287191	391470		     1312.66	       81.63	rs4591358-C	rs4591358	0	4591358	Intergenic	1	0.215	7E-6	5.154901959985742	(Allelic model)	   1.58	[1.297-1.92] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	17p12	17	12874085	RICH2	ARHGAP44			9912			rs11651483-C	rs11651483	0	11651483	intron	0	0.665	3E-7	6.522878745280337	(Recessive model)	   1.36	[1.12-1.643] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	13q31.3	13	92436398	GPC5	GPC5			2262			rs4771859-G	rs4771859	0	4771859	intron	0	0.709	1E-6	5.999999999999999	(Recessive model)	   1.33	[1.088-1.623] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	1q41	1	216542978	ESRRG	ESRRG			2104			rs12145418-T	rs12145418	0	12145418	intron	0	0.274	2E-6	5.698970004336018	(Recessive model)	   1.33	[1.104-1.604] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	16q23.1	16	77294998	ADAMTS18	ADAMTS18			170692			rs12935229-A	rs12935229	0	12935229	cds-synon	0	0.182	4E-6	5.397940008672037	(Recessive model)	   1.50	[1.214-1.84] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	12q24.31	12	122146362	MLXIP	MLXIP			22877			rs1043763-T	rs1043763	0	1043763	UTR-3	0	0.574	7E-6	5.154901959985742	(Dominant model)	   1.50	[1.248-1.795] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	14q32.2	14	97521520	LOC100129345	LOC101929241			101929241			rs8022296-G	rs8022296	0	8022296	intron	0	0.608	7E-6	5.154901959985742	(Recessive model)	   1.27	[1.058-1.521] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	7p21.1	7	17045697	LOC100131425	RAD17P1 - AHR	9207	196		      179.33	      252.96	rs6961860-G	rs6961860	0	6961860	Intergenic	1	0.495	5E-6	5.301029995663981	(Recessive model)	   1.28	[1.078-1.527] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	15q24.2	15	75157333	RPL36AP45	PPCDC - RPL36AP45	60490	441727		      106.61	       29.32	rs4886670-A	rs4886670	0	4886670	Intergenic	1	0.227	1E-6	5.999999999999999	(Allelic model)	   1.61	[1.330-1.937] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	19q12	19	30446936	ZNF536	ZNF536			9745			rs33428-G	rs33428	0	33428	intron	0	0.403	3E-6	5.522878745280337	(Dominant model)	   1.38	[1.160-1.629] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	14q11.2	14	22468664	TRA	LOC101929755;LOC102724753			101929755;102724753			rs12589282-G	rs12589282	0	12589282	intron;intron	0	0.437	4E-6	5.397940008672037	(Recessive model)	   1.48	[1.25-1.752] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	3p14.1	3	66475539	LRIG1	LRIG1			26018			rs3845905-G	rs3845905	0	3845905	intron	0	0.85	4E-6	5.397940008672037	(Allelic model)	   1.89	[1.433-2.503] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	5q35.1	5	170115596	FOXI1	FOXI1 - KRT18P41	2299	345430		        5.87	       25.01	rs1895302-C	rs1895302	0	1895302	Intergenic	1	0.478	7E-6	5.154901959985742	(Dominant model)	   1.34	[1.132-1.587] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	1p36.12	1	21511262	ALPL	ALPL			249			rs16825455-T	rs16825455	0	16825455	intron	0	0.605	9E-6	5.045757490560675	(Dominant model)	   1.43	[1.193-1.702] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	7p21.3	7	12055340	TMEM106B	THSD7A - TMEM106B	221981	54664		      223.14	      155.86	rs1035147-T	rs1035147	0	1035147	Intergenic	1	0.877	4E-6	5.397940008672037	(Allelic model)	   7.29	[2.587-20.559] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	5q21.2	5	104872312	RAB9P1	NUDT12 - RAB9BP1	83594	9366		     1309.52	      227.16	rs10074959-T	rs10074959	0	10074959	Intergenic	1	0.237	1E-6	5.999999999999999	(Recessive model)	   1.52	[1.048-2.217] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	1p21.3	1	99123823	LOC100129620	LOC100129620			100129620			rs303386-A	rs303386	0	303386	intron	0	0.444	4E-6	5.397940008672037	(Dominant)	   1.77	[1.256-2.483] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	14q22.3	14	55765082	RPL13AP3	RPL13AP3			645683			rs7494275-C	rs7494275	0	7494275	nearGene-5	0	0.406	9E-6	5.045757490560675	(Recessive model)	   1.73	[1.232-2.433] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	3p26.1	3	6968394	GRM7	GRM7			2917			rs480409-G	rs480409	0	480409	intron	0	0.348	9E-6	5.045757490560675	(Recessive model)	   1.84	[1.307-2.596] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	5q21.2	5	104863359	RAB9P1	NUDT12 - RAB9BP1	83594	9366		     1300.57	      236.12	rs1632744-T	rs1632744	0	1632744	Intergenic	1	0.258	5E-6	5.301029995663981	(Recessive model)	   1.39	[0.959-2.007] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (camptothecin)	59 Japanese ancestry cases, 155 Japanese ancestry controls	NA	6p25.2	6	3836964	FAM50B	PXDC1 - FAM50B	221749	26240		       84.95	       12.43	rs17318866-G	rs17318866	0	17318866	Intergenic	1	0.79	1E-6	5.999999999999999	(Allelic model)	   7.56	[2.689-21.263] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (camptothecin)	59 Japanese ancestry cases, 155 Japanese ancestry controls	NA	2p22.1	2	41046491	LOC729984	SLC8A1 - HNRNPA1P57	6546	101060039		      534.02	      110.07	rs17027130-C	rs17027130	0	17027130	Intergenic	1	0.387	3E-6	5.522878745280337	(Allelic model)	   2.87	[1.844-4.452] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (camptothecin)	59 Japanese ancestry cases, 155 Japanese ancestry controls	NA	1p21.3	1	99123823	LOC100129620	LOC100129620			100129620			rs303386-A	rs303386	0	303386	intron	0	0.429	4E-6	5.397940008672037	(Dominant model)	   2.24	[1.448-3.46] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	13q12.11	13	20476436	CRYL1	CRYL1			51084			rs7989332-G	rs7989332	0	7989332	intron	0	0.738	5E-6	5.301029995663981	(Allelic model)	   2.06	[1.507-2.806] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	5p13.2	5	35799892	SPEF2	SPEF2			79925			rs3822735-G	rs3822735	0	3822735	intron	0	0.752	2E-6	5.698970004336018	(Dominant model)	   2.06	[1.500-2.834] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	15q21.3	15	55657884	PRTG	PRTG			283659			rs11071200-T	rs11071200	0	11071200	intron	0	0.008	9E-7	6.045757490560675	(Dominant model)	   8.24	[2.888-23.520] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	3p14.1	3	66475539	LRIG1	LRIG1			26018			rs3845905-G	rs3845905	0	3845905	intron	0	0.828	6E-6	5.221848749616356	(Allelic model)	   2.43	[1.645-3.598] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	16q23.3	16	81741193	CMIP	PLCG2			5336			rs12446319-A	rs12446319	0	12446319		0	0.143	9E-6	5.045757490560675	(Allelic model)	   2.03	[1.48-2.774] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	3p14.3	3	58041470	FLNB	FLNB			2317			rs1623879-G	rs1623879	0	1623879	intron	0	0.321	4E-6	5.397940008672037	(Recessive model)	   1.67	[1.297-2.148] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	15q24.1	15	74839978	ULK3	ULK3			25989			rs936229-G	rs936229	0	936229	intron	0	0.595	4E-6	5.397940008672037	(Dominant model)	   1.69	[1.302-2.18] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	8p23.2	8	4247625	CSMD1	CSMD1			64478			rs1714746-G	rs1714746	0	1714746	intron	0	0.435	7E-6	5.154901959985742	(Recessive model)	   1.61	[1.261-2.056] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	1p13.3	1	108850215	AKNAD1	AKNAD1			254268			rs1277203-A	rs1277203	0	1277203	intron	0	0.626	9E-6	5.045757490560675	(Recessive model)	   1.62	[1.243-2.098] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	7p21.1	7	16822225	AGR2	AGR2 - AGR3	10551	155465		       17.11	       37.18	rs10253216-T	rs10253216	0	10253216	Intergenic	1	0.468	2E-7	6.698970004336019	(Dominant model)	   1.48	[1.155-1.891] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	4q13.1	4	62558371	LOC644534	HMGN1P11 - EXOC5P1	644534	644548		       46.80	      258.46	rs11944965-T	rs11944965	0	11944965	Intergenic	1	0.678	2E-6	5.698970004336018	(Dominant model)	   1.99	[1.475-2.676] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	18q23	18	76776324	ZNF236	ARL2BPP1 - ZNF236	399666	7776		       72.07	       46.26	rs2406342-T	rs2406342	0	2406342	Intergenic	1	0.475	2E-6	5.698970004336018	(Dominant model)	   1.70	[1.323-2.177] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	20p12.3	20	7771719	SFRS13AP2	MIR8062 - SRSF10P2	102465865	171472		      400.03	       59.98	rs6077251-T	rs6077251	0	6077251	Intergenic	1	0.153	3E-6	5.522878745280337	(Allelic model)	   2.07	[1.537-2.773] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	8p21.1	8	27882900	SCARA5	SCARA5			286133			rs11774576-A	rs11774576	0	11774576	intron	0	0.581	3E-6	5.522878745280337	(Dominant model)	   1.70	[1.307-2.208] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	11p15.1	11	18800490	PTPN5	PTPN5 - MRGPRX1	84867	259249		        7.77	      133.32	rs4627050-G	rs4627050	0	4627050	Intergenic	1	0.649	4E-6	5.397940008672037	(Allelic model)	   1.93	[1.452-2.572] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	1p13.3	1	107760300	VAV3	VAV3			10451			rs12142335-A	rs12142335	0	12142335	intron	0	0.004	8E-6	5.096910013008055	(Dominant model)	   9.71	[3.175-29.71] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cyclophosphamide)	168 Japanese ancestry cases, 335 Japanese ancestry controls	NA	16p12.2	16	22877865	HS3ST2	HS3ST2			9956			rs2519974-T	rs2519974	0	2519974	intron	0	0.381	4E-6	5.397940008672037	(Dominant model)	   1.65	[1.264-2.146] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cyclophosphamide)	168 Japanese ancestry cases, 335 Japanese ancestry controls	NA	1q31.3	1	198500032	ATP6V1G3	NEK7 - ATP6V1G3	140609	127124		      177.61	       23.19	rs10922438-T	rs10922438	0	10922438	Intergenic	1	0.106	6E-6	5.221848749616356	(Allelic model)	   2.30	[1.608-3.293] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cyclophosphamide)	168 Japanese ancestry cases, 335 Japanese ancestry controls	NA	19p13.3	19	6475602	DENND1C	DENND1C			79958			rs3745571-T	rs3745571	0	3745571	intron	0	0.67	8E-6	5.096910013008055	(Dominant model)	   1.73	[1.276-2.345] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	13q33.2	13	105944370	LOC728192	LINC00344 - RNA5SP38	100874133	100873370		      212.66	      211.00	rs488248-T	rs488248	0	488248	Intergenic	1	0.795	3E-6	5.522878745280337	(Allelic model)	   2.90	[1.802-4.665] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	7q31.32	7	123119926	SLC13A1	SLC13A1			6561			rs4727963-C	rs4727963	0	4727963	intron	0	0.618	1E-6	5.999999999999999	(Dominant model)	   2.09	[1.505-2.914] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	9q33.2	9	121758981	DAB2IP	DAB2IP			153090			rs3747851-T	rs3747851	0	3747851	cds-synon	0	0.176	6E-7	6.221848749616355	(Allelic model)	   2.38	[1.693-3.339] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	6q22.33	6	129687300	ARHGAP18	ARHGAP18			93663			rs12660691-A	rs12660691	0	12660691	intron	0	0.819	4E-6	5.397940008672037	(Allelic model)	   3.20	[1.899-5.391] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	14q31.3	14	87274681	GALC	FLRT2 - GALC	23768	2581		     1645.99	      563.14	rs1756650-G	rs1756650	0	1756650	Intergenic	1	0.162	2E-6	5.698970004336018	(Recessive model)	   1.39	[0.954-2.014] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	18q22.1	18	64503491	LOC284294	LINC00305 - CDH7	221241	1005		      354.47	     1246.76	rs4553720-T	rs4553720	0	4553720	Intergenic	1	0.281	7E-6	5.154901959985742	(Recessive model)	   1.55	[1.131-2.116] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	2q21.1	2	129276439	LOC151121	ISCA1P6 - RPL22P7	100130549	100129819		      757.18	      663.41	rs837841-T	rs837841	0	837841	Intergenic	1	0.662	8E-6	5.096910013008055	(Recessive model)	   1.28	[0.930-1.759] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (doxorubicin)	83 Japanese ancestry cases, 66 Japanese ancestry controls	NA	15q24.3	15	77872364	LOC100302666	LINGO1 - CSPG4P13	84894	100302666		       52.94	        6.27	rs11857176-A	rs11857176	0	11857176	Intergenic	1	0.515	8E-7	6.096910013008056	(Recessive model)	   1.80	[1.127-2.874] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (doxorubicin)	83 Japanese ancestry cases, 66 Japanese ancestry controls	NA	2p25.3	2	773278	LOC339822	TMEM18 - LINC01115	129787	339822		       95.84	        6.56	rs4380275-G	rs4380275	0	4380275	Intergenic	1	0.152	5E-6	5.301029995663981	(Recessive model)	   3.60	[2.041-6.365] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (doxorubicin)	83 Japanese ancestry cases, 66 Japanese ancestry controls	NA	11q14.2	11	86703240	ME3	LOC102724764			102724764			rs2512987-T	rs2512987	0	2512987	intron	0	0.417	7E-6	5.154901959985742	(Allelic model)	   2.99	[1.855-4.803] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	12p13.31	12	6332835	TNFRSF1A	TNFRSF1A			7132			rs4149639-C	rs4149639	0	4149639	intron	0	0.042	3E-7	6.522878745280337	(Allelic model)	   4.44	[2.571-7.677] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	13q12.2	13	27786350	GSX1	NPM1P4 - GSX1	100128903	219409		       89.05	        6.29	rs1923834-G	rs1923834	0	1923834	Intergenic	1	0.77	5E-6	5.301029995663981	(Dominant model)	   3.24	[1.823-5.744] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	10q26.13	10	124456270	LHPP	NKX1-2 - LHPP	390010	64077		        6.29	        5.50	rs908366-A	rs908366	0	908366	Intergenic	1	0.328	7E-6	5.154901959985742	(Allelic model)	   2.20	[1.564-3.092] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	5p15.32	5	5407701	KIAA0947	LOC101929200			101929200			rs2964475-C	rs2964475	0	2964475	intron	0	0.415	4E-6	5.397940008672037	(Allelic model)	   2.25	[1.592-3.174] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	3q27.3	3	187999098	LOC100505844	BCL6 - LPP-AS2	604	339929		      253.37	      152.11	rs1553091-G	rs1553091	0	1553091	Intergenic	1	0.358	7E-6	5.154901959985742	(Recessive model)	   1.48	[1.053-2.08] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	20p12.2	20	10202869	LOC100131208	SNAP25-AS1			100131208			rs6039763-A	rs6039763	0	6039763	intron	0	0.09	2E-6	5.698970004336018	(Dominant model)	   5.97	[2.502-14.23] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	1p33	1	47632734	LOC388630	ATP6V0E1P4 - TRABD2B	100874504	388630		       81.98	      127.79	rs2506991-G	rs2506991	0	2506991	Intergenic	1	0.269	2E-6	5.698970004336018	(Recessive model)	   3.95	[2.101-7.418] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	2p16.3	2	49487883	FSHR	MIR548BA - RPL7P13	102465854	130728		      428.23	      390.73	rs12987465-A	rs12987465	0	12987465	Intergenic	1	0.359	7E-6	5.154901959985742	(Recessive model)	   2.60	[1.424-4.737] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	7p21.1	7	20216082	MACC1	MACC1;LOC100506098			346389;100506098			rs3095008-T	rs3095008	0	3095008	intron;nearGene-5	0	0.846	9E-6	5.045757490560675	(Dominant model)	NR	NR	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	18q23	18	77893443	LOC100421527	BDP1P - LINC01029	724038	101927715		      456.19	       77.85	rs9961113-C	rs9961113	0	9961113	Intergenic	1	0.403	1E-6	5.999999999999999	(Allelic model)	   2.47	[1.706-3.584] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	22q12.2	22	30757289	OSBP2	OSBP2			23762			rs9609078-T	rs9609078	0	9609078	intron	0	0.009	4E-6	5.397940008672037	(Allelic model)	  10.89	[3.528-33.61] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	5q11.2	5	59417854	PDE4D	PDE4D			5144			rs2547917-A	rs2547917	0	2547917	intron	0	0.212	3E-6	5.522878745280337	(Recessive model)	   2.00	[1.345-2.965] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	15q25.3	15	84872155	ALPK3	ALPK3			57538			rs12900463-C	rs12900463	0	12900463	UTR-3	0	0.115	4E-6	5.397940008672037	(Recessive model)	   2.15	[1.342-3.457] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	5q35.2	5	174198151	HMP19	HMP19 - GAPDHP71	51617	2613		       88.97	      315.08	rs6863418-A	rs6863418	0	6863418	Intergenic	1	0.055	7E-6	5.154901959985742	(Dominant model)	   3.62	[2.042-6.429] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	9q34.2	9	134233655	RXRA	RNU6ATAC - RXRA	100151684	6256		       69.09	       92.82	rs10785877-T	rs10785877	0	10785877	Intergenic	1	0.66	7E-7	6.154901959985743	(Allelic model)	   2.58	[1.766-3.769] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	1p36.21	1	15013464	RP1-21O18.1	KAZN			23254			rs6429703-T	rs6429703	0	6429703	intron	0	0.078	8E-6	5.096910013008055	(Allelic model)	   2.94	[1.802-4.804] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	12q22	12	95096472	FGD6	FGD6			55785			rs12310399-A	rs12310399	0	12310399	intron	0	0.567	2E-7	6.698970004336019	(Recessive model)	   1.85	[1.329-2.58] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	19q12	19	28375689	LOC100420587	SLC25A1P5 - LINC00906	642290	148145		      569.48	      589.44	rs995834-C	rs995834	0	995834	Intergenic	1	0.425	1E-6	5.999999999999999	(Dominant model)	   1.87	[1.364-2.566] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	1p22.2	1	89557237	LRRC8B	LRRC8B			23507			rs922107-G	rs922107	0	922107	intron	0	0.211	3E-6	5.522878745280337	(Recessive model)	   1.79	[1.25-2.558] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	7p14.1	7	37522765	LOC442668	RPS10P14 - GPR141	646942	353345		      146.69	        7.84	rs1425132-T	rs1425132	0	1425132	Intergenic	1	0.666	5E-6	5.301029995663981	(Recessive model)	   1.43	[1.013-2.017] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	22q12.3	22	36121884	APOL3	LOC102723507			102723507			rs1476029-A	rs1476029	0	1476029	intron	0	0.015	8E-6	5.096910013008055	(Allelic model)	   6.43	[2.429-17.00] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	6q21	6	105881180	PRDM1	RPL35P3 - PRDM1	728010	639		      578.32	      205.14	rs9386485-T	rs9386485	0	9386485	Intergenic	1	0.477	1E-6	5.999999999999999	(Allelic model)	   1.82	[1.429-2.32] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	9p13.3	9	35648953	SIT1	SIT1			27240			rs3138083-A	rs3138083	0	3138083	nearGene-3	0	0.117	4E-6	5.397940008672037	(Allelic model)	   2.14	[1.551-2.942] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	2p24.1	2	20135948	RPS16P2	LAPTM4A - RPS16P2	9741	402069		       83.92	       19.63	rs4666360-C	rs4666360	0	4666360	Intergenic	1	0.114	3E-6	5.522878745280337	(Dominant model)	   2.14	[1.546-2.95] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	15q24.2	15	75157333	RPL36AP45	PPCDC - RPL36AP45	60490	441727		      106.61	       29.32	rs4886670-A	rs4886670	0	4886670	Intergenic	1	0.229	7E-6	5.154901959985742	(Allelic model)	   1.84	[1.412-2.383] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	5q35.1	5	172844004	ERGIC1	ERGIC1			57222			rs792975-T	rs792975	0	792975	intron	0	0.519	8E-6	5.096910013008055	(Allelic model)	   1.75	[1.366-2.232] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	1p22.2	1	89559960	LRRC8B	LRRC8B			23507			rs922106-T	rs922106	0	922106	intron	0	0.202	9E-7	6.045757490560675	(Recessive model)	   1.68	[1.277-2.207] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	8q22.2	8	98009781	MATN2	MATN2			4147			rs2444896-T	rs2444896	0	2444896	intron	0	0.603	2E-6	5.698970004336018	(Dominant model)	   1.75	[1.355-2.269] 	Illumina [733,202]	N
11/14/2013	23648065	Low SK	05/04/2013	Cancer Sci	http://www.ncbi.nlm.nih.gov/pubmed/23648065	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	17p13.1	17	9971888	GAS7	GAS7			8522			rs3786094-C	rs3786094	0	3786094	intron	0	0.422	6E-6	5.221848749616356	(Recessive model)	   1.53	[1.206-1.944] 	Illumina [733,202]	N
09/21/2013	23678272	Cheong KA	05/02/2013	J Korean Med Sci	http://www.ncbi.nlm.nih.gov/pubmed/23678272	Three new single nucleotide polymorphisms identified by a genome-wide association study in Korean patients with vitiligo.	Vitiligo (non-segmental)	20 Korean ancestry cases, 192 Korean ancestry controls	184 Korean ancestry cases, 192 Korean ancestry controls	16q12.2	16	53605526	KIAA1005	RPGRIP1L			23322			rs3213758-A	rs3213758	0	3213758	missense	0	.497	6E-11	10.22184874961635		   2.77	[2.04-3.76] 	Affymetrix [500,568]	N
09/16/2013	23643386	Hatoum IJ	05/02/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23643386	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	5q33.3	5	160393924	C1QTNF2	C5orf54			63920			rs10515808-A	rs10515808	0	10515808	missense	0	NR	4E-7	6.397940008672037		   3.08	[1.88-4.28] unit decrease	Illumina [1,943,170] (Imputed)	N
09/16/2013	23643386	Hatoum IJ	05/02/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23643386	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	14q31.3	14	89127951	FOXN3	MPPE1P1 - FOXN3	390501	1112		       16.73	       28.22	rs7158359-G	rs7158359	0	7158359	Intergenic	1	NR	5E-6	5.301029995663981		   2.27	[1.29-3.25] unit decrease	Illumina [1,943,170] (Imputed)	N
09/16/2013	23643386	Hatoum IJ	05/02/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23643386	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	11q14.1	11	77589003	AQP11	AQP11			282679			rs7129556-T	rs7129556	0	7129556	nearGene-5	0	NR	4E-6	5.397940008672037		   2.07	[1.19-2.95] unit decrease	Illumina [1,943,170] (Imputed)	N
09/16/2013	23643386	Hatoum IJ	05/02/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23643386	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	16q12.1	16	51211576	SALL1	SALL1 - UNGP1	6299	57004		       59.26	       67.10	rs7185923-C	rs7185923	0	7185923	Intergenic	1	NR	4E-6	5.397940008672037		   1.89	[1.09-2.69] unit decrease	Illumina [1,943,170] (Imputed)	N
09/16/2013	23643386	Hatoum IJ	05/02/2013	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23643386	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	15q26.1	15	92387181	ST8SIA2	NPM1P5 - ST8SIA2	4874	8128		       99.95	        6.73	rs17702901-A	rs17702901	0	17702901	Intergenic	1	NR	7E-8	7.154901959985742		   6.64	[4.23-9.05] unit decrease	Illumina [1,943,170] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	1q31.3	1	196704863	CFH, CFHR4, CFHR5, KCNT2	CFH			3075			rs1831282-?	rs1831282	0	1831282	intron	0	0.55	1E-31	31		   2.38	[2.08-2.78] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	6	31952140	RDBP,CFB, ATF6B,STK19	CFB;NELFE			629;7936			rs522162-?	rs522162	0	522162	nearGene-3;UTR-3	0	0.93	2E-10	9.698970004336017		   2.33	[1.82-3.03] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	10q26.13	10	122454932	ARMS2, HTRA, PLEKHA1, BTBD16,	ARMS2			387715			rs10490924-A	rs10490924	0	10490924	missense	0	0.35	8E-27	26.09691001300805		   2.28	[1.96-2.65] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	17q22	17	57031373	Intergenic	SCPEP1 - RNF126P1	59342	376412		       24.61	       14.11	rs6503782-?	rs6503782	0	6503782	Intergenic	1	0.51	2E-6	5.698970004336018		   1.41	[1.22-1.61] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	6p21.33	6	31965384	SKIV2L	SKIV2L			6499			rs406936-?	rs406936	0	406936	intron	0	0.10	7E-7	6.154901959985743		   1.75	[1.41-2.17] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	10q26.13	10	122455799	ARMS2,HTRA1,PLEKHA1,BTBD16	ARMS2			387715			rs3750848-C	rs3750848	0	3750848	intron	0	0.37	3E-29	28.52287874528033		   3.12	[2.55-3.80] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	1q31.3	1	196704863	CFH,CFHR4,CFHR5,KCNT2	CFH			3075			rs1831282-?	rs1831282	0	1831282	intron	0	0.53	9E-24	23.04575749056067		   2.63	[2.17-3.13] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	6p21.33	6	31952140	RDBP,CFB,DKFZp779M0311	CFB;NELFE			629;7936			rs522162-?	rs522162	0	522162	nearGene-3;UTR-3	0	0.93	3E-7	6.522878745280337		   2.38	[1.69-3.33] 	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (smoking status interaction)	548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls	NR	5p15.2	5	9978972	Intergenic	TAS2R1 - FAM173B	50834	134145		      348.62	      246.54	rs553169-A	rs553169	0	553169	Intergenic	1	0.29	9E-6	5.045757490560675		NR	NR	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (smoking status interaction)	548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls	NR	6q16.2	6	99880322	Intergenic	PRDM13 - MCHR2	59336	84539		      264.74	       39.59	rs4840097-G	rs4840097	0	4840097	Intergenic	1	0.31	5E-7	6.30102999566398		NR	NR	Affymetrix [2,543,887] (Imputed)	N
11/16/2013	23577725	Naj AC	05/01/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23577725	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (smoking status interaction)	548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls	NR	18q22.1	18	64751208	Intergenic	LINC00305 - CDH7	221241	1005		      602.18	      999.04	rs17073641-C	rs17073641	0	17073641	Intergenic	1	0.45	1E-7	7		NR	NR	Affymetrix [2,543,887] (Imputed)	N
09/18/2013	23636237	Tanaka T	05/01/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23636237	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	8p23.2	8	5907420	NR	RPL23AP54 - MCPH1	100271466	79648		      430.45	      499.17	rs2840445-A	rs2840445	0	2840445	Intergenic	1	0.27	5E-6	5.301029995663981	(Carbohydrate)	    .22	[0.12-0.32] % decrease	Illumina & Affymetrix [2.5 million] (Imputed)	N
09/18/2013	23636237	Tanaka T	05/01/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23636237	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	14q22.1	14	50857024	NR	NIN - ABHD12B	51199	145447		       25.90	       15.14	rs8019546-A	rs8019546	0	8019546	Intergenic	1	0.3	5E-6	5.301029995663981	(Carbohydrate)	    .22	[0.12-0.32] % increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
09/18/2013	23636237	Tanaka T	05/01/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23636237	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	19q13.33	19	48745473	FGF21	IZUMO1			284359			rs838145-G	rs838145	0	838145	intron	0	0.46	3E-7	6.522878745280337	(Carbohydrate)	    .23	[0.15-0.31] % increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
09/18/2013	23636237	Tanaka T	05/01/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23636237	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	5q34	5	167799974	NR	TENM2			57451			rs1549309-A	rs1549309	0	1549309	intron	0	0.17	2E-6	5.698970004336018	(Carbohydrate)	    .27	[0.15-0.39] % increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
09/18/2013	23636237	Tanaka T	05/01/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23636237	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	19q13.33	19	48745473	FGF21	IZUMO1			284359			rs838145-G	rs838145	0	838145	intron	0	0.46	4E-10	9.397940008672037	(Fat)	    .22	[0.14-0.3] % decrease	Illumina & Affymetrix [2.5 million] (Imputed)	N
09/18/2013	23636237	Tanaka T	05/01/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23636237	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	19q13.33	19	48743609	NR	IZUMO1			284359			rs838147-A	rs838147	0	838147	intron	0	0.48	7E-7	6.154901959985743	(Carbohydrate)	    .22	[0.14-0.3] % increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
09/17/2013	23636237	Tanaka T	05/01/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23636237	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	41,257 European ancestry individuals	16q12.2	16	53767042	FTO	FTO			79068			rs1421085-C	rs1421085	0	1421085	intron	0	0.42	1E-9	8.999999999999998	(Protein)	    .10	[0.061-0.139] % increase	Illumina & Affymetrix [2.5 million] (Imputed)	N
09/16/2013	23633212	Rinella ES	04/30/2013	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/23633212	Genome-wide association of single-nucleotide polymorphisms with weight loss outcomes after Roux-en-Y gastric bypass surgery.	Weight loss (gastric bypass surgery)	86 European ancestry individuals with least EBWL, 89 European ancestry individuals with most EBWL 	164 European ancestry individuals with least EBWL, 169 European ancestry individuals with most EBWL	6p12.3	6	51778216	PKHD1	PKHD1			5314			rs728996-?	rs728996	0	728996	intron	0	0.53	5E-7	6.30102999566398		   1.67	[NR] 	Affymetrix [730,767]	N
09/16/2013	23633212	Rinella ES	04/30/2013	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/23633212	Genome-wide association of single-nucleotide polymorphisms with weight loss outcomes after Roux-en-Y gastric bypass surgery.	Weight loss (gastric bypass surgery)	86 European ancestry individuals with least EBWL, 89 European ancestry individuals with most EBWL 	164 European ancestry individuals with least EBWL, 169 European ancestry individuals with most EBWL	6p12.3[rs728996]; 6p12.3[rs2894788]			PKHD1	 - 						6-SNP Haplotype	rs728996, rs2894788, rs6458777, rs4715233, rs9296661, rs1326589					0.39	5E-8		(Haplotype - ??????)	  10.90	 unit decrease	Affymetrix [730,767]	N
09/14/2013	23620144	Sulkava S	04/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620144	Genome-wide scan of job-related exhaustion with three replication studies implicate a susceptibility variant at the UST gene locus.	Job-related exhaustion	1,256 European ancestry individuals	13,864 European ancestry individuals	6q25.1	6	148949693	UST	UST			10090			rs13219957-A	rs13219957	0	13219957	intron	0	0.144	7E-7	6.154901959985743		    .08	[0.050-0.112] unit increase	Illumina [555,388]	N
09/14/2013	23612905	Zhao SX	04/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23612905	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	1q23.2	1	160495121	SLAMF6	SLAMF6			114836			rs1265883-C	rs1265883	0	1265883	intron	0	0.1	2E-18	17.69897000433602		   1.34	[1.25-1.43] 	Illumina [8,019,905] (Imputed)	N
09/14/2013	23612905	Zhao SX	04/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23612905	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	8q24.22	8	133133268	TG,WISP1,SLA	TG			7038			rs2294025-T	rs2294025	0	2294025	intron	0	0.19	8E-9	8.096910013008056		   1.16	[1.10-1.22] 	Illumina [8,019,905] (Imputed)	N
09/14/2013	23612905	Zhao SX	04/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23612905	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	14q32.2	14	98021670	Intergenic	C14orf64 - C14orf177	388011	283598		       43.55	      689.94	rs1456988-?	rs1456988	0	1456988	Intergenic	1	0.53	5E-9	8.301029995663981		   1.12	[1.09-1.18] 	Illumina [8,019,905] (Imputed)	N
09/14/2013	23612905	Zhao SX	04/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23612905	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	22q12.3	22	37185445	C1QTNF6, RAC2	C1QTNF6			114904			rs229527-?	rs229527	0	229527	missense	0	0.71	5E-20	19.30102999566398		   1.23	[1.19-1.3] 	Illumina [8,019,905] (Imputed)	N
09/14/2013	23612905	Zhao SX	04/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23612905	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	Xq21.1	23	79241621	GPR174, ITM2A	GPR174 - KIF4CP	84636	347363		       69.39	       81.68	rs5912838-?	rs5912838	0	5912838	Intergenic	1	0.58	2E-33	32.69897000433601		   1.32	[1.25-1.37] 	Illumina [8,019,905] (Imputed)	N
09/14/2013	23612905	Zhao SX	04/29/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23612905	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	6,358 Han Chinese ancestry cases, 6,722 Han Chinese ancestry controls	9q34.2	9	133273813	ABO	ABO			28			rs505922-?	rs505922	0	505922	intron	0	0.53	2E-10	9.698970004336017		   1.14	[1.1-1.19] 	Illumina [483,947] 	N
09/12/2013	23624525	Deng M	04/28/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23624525	Genome-wide association analyses in Han Chinese identify two new susceptibility loci for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	506 Han Chinese ancestry cases, 1,859 Han Chinese ancestry controls	706 Han Chinese ancestry cases, 1,777 Han Chinese ancestry controls	1q32.2	1	209539544	CAMK1G	MIR205 - CAMK1G	406988	57172		      107.30	       44.16	rs6703183-A	rs6703183	0	6703183	Intergenic	1	0.3416	3E-8	7.522878745280337		   1.31	[NR] 	Illumina [473,683] 	N
09/12/2013	23624525	Deng M	04/28/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23624525	Genome-wide association analyses in Han Chinese identify two new susceptibility loci for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	506 Han Chinese ancestry cases, 1,859 Han Chinese ancestry controls	706 Han Chinese ancestry cases, 1,777 Han Chinese ancestry controls	22q11.23	22	24186073	CABIN1, SUSD2, GGT5	SUSD2			56241			rs8141797-G	rs8141797	0	8141797	missense	0	0.1026	2E-9	8.698970004336019		   1.52	[NR] 	Illumina [473,683] 	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (plasma)	9,260 European ancestry individuals		17q22	17	59210093	C17orf71	SMG8			55181			rs6503905-A	rs6503905	0	6503905	cds-synon	0	0.37	3E-12	11.52287874528034		    .06	[0.040-0.080] unit decrease	Illumina & Affymetrix [2,421,770]	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (plasma)	9,260 European ancestry individuals		17q22	17	58292488	MPO, RNF43, PPM1E	MPO - BZRAP1	4353	9256		       11.55	        8.74	rs12940923-A	rs12940923	0	12940923	Intergenic	1	0.84	4E-9	8.397940008672036		    .07	[0.050-0.090] unit decrease	Illumina & Affymetrix [2,421,770]	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (plasma)	9,260 European ancestry individuals		1q42.13	1	229582254	ABCB10,TAF5L,URB2,GALNT2GALNT2	HMGN2P19 - TAF5L	100874466	27097		       11.46	       10.86	rs12049351-C	rs12049351	0	12049351	Intergenic	1	0.79	1E-6	5.999999999999999		    .05	[0.030-0.070] unit decrease	Illumina & Affymetrix [2,421,770]	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum) 	9,305 European ancestry individuals		1q31.3	1	196673103	CFH	CFH			3075			rs800292-A	rs800292	0	800292	missense	0	0.23	5E-41	40.30102999566398		    .15	[0.13-0.17] unit decrease	Illumina & Affymetrix [2,397,181]	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum) 	9,305 European ancestry individuals		6p21.32	6	32222843	NOTCH4,C2,HLA	NOTCH4			4855			rs3134931-T	rs3134931	0	3134931	intron	0	0.73	1E-8	8		    .05	[0.030-0.070] unit decrease	Illumina & Affymetrix [2,397,181]	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum) 	9,305 European ancestry individuals		20p13	20	1478415	SIRPB2	SIRPB2			284759			rs6042507-A	rs6042507	0	6042507	missense	0	0.11	4E-8	7.397940008672037		    .09	[0.051-0.129] unit decrease	Illumina & Affymetrix [2,397,181]	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum) 	9,305 European ancestry individuals		1q42.13	1	230159169	GALNT2	GALNT2			2590			rs2144300-C	rs2144300	0	2144300	intron	0	0.39	3E-6	5.522878745280337		    .05	[0.030-0.070] unit decrease	Illumina & Affymetrix [2,397,181]	N
09/10/2013	23620142	Reiner AP	04/24/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23620142	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum) 	9,305 European ancestry individuals		8p21.3	8	20224379	ATP6V1B2,LZTS1	ATP6V1B2 - LZTS1	526	11178		        2.68	       21.79	rs1390943-G	rs1390943	0	1390943	Intergenic	1	0.33	9E-7	6.045757490560675		    .05	[0.03-0.07] unit decrease	Illumina & Affymetrix [2,397,181]	N
09/05/2013	23626673	Matullo G	04/23/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23626673	Genetic variants associated with increased risk of malignant pleural mesothelioma: a genome-wide association study.	Malignant pleural mesothelioma	392 European ancestry cases, 367 European ancestry controls	428 European ancestry cases, 1,269 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [5 million] (Imputed)	N
09/07/2013	23642732	Cox AJ	04/19/2013	Atherosclerosis	http://www.ncbi.nlm.nih.gov/pubmed/23642732	Association of SNPs in the UGT1A gene cluster with total bilirubin and mortality in the Diabetes Heart Study.	Bilirubin levels	1,180 European ancestry individuals from ~475 families		2q37.1	2	233759924	UGT1A	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs887829-T	rs887829	0	887829	intron;intron;intron;intron;intron;intron;intron;nearGene-5;intron	0	0.312	9E-20	19.04575749056067		NR	NR	Illumina & Affymetrix [371,951]	N
09/07/2013	23562823	Sheu WH	04/19/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23562823	Genome-wide association study in a Chinese population with diabetic retinopathy.	Diabetic retinopathy 	437 Chinese ancestry cases, 570 Chinese ancestry controls	329  Hispanic cases, 256 Hispanic controls	13q22.2	13	75562512	TBC1D4,COMMD6,UCHL3	UCHL3			7347			rs9543976-G	rs9543976	0	9543976	intron	0	0.30	7E-6	5.154901959985742		   1.60	[NR] 	Illumina [~2,166,765] (Imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	3q26.1	3	161102736	B3GALNT1	B3GALNT1			8706			rs4557202-C	rs4557202	0	4557202	intron	0	0.43	2E-6	5.698970004336018	(African American)	   4.21	[2.49-5.93] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	11q23.3	11	117518217	DSCAML1	DSCAML1			57453			rs11216435-T	rs11216435	0	11216435	intron	0	0.32	3E-6	5.522878745280337	(African American)	   4.41	[2.55-6.27] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q22.2	15	60645203	RORA	RORA			6095			rs339978-T	rs339978	0	339978	intron	0	0.2	2E-6	5.698970004336018	(African American)	   5.31	[3.13-7.49] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	1q44	1	243671884	AKT3	AKT3			10000			rs320320-A	rs320320	0	320320	intron	0	0.48	5E-6	5.301029995663981	(African American)	   4.03	[2.31-5.75] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q21.2	15	51253257	CYP19A1	CYP19A1			1588			rs12907866-A	rs12907866	0	12907866	intron	0	0.84	4E-7	6.397940008672037	(African American)	   6.06	[3.71-8.41] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q21.3	15	54088003	UNC13C	UNC13C			440279			rs11071033-T	rs11071033	0	11071033	intron	0	0.71	3E-6	5.522878745280337	(African American)	   4.49	[2.61-6.37] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	7q11.22	7	67723801	FLJ13195	STAG3L4 - MTND4P3	64940	100873189		      402.28	      542.52	rs7807441-T	rs7807441	0	7807441	Intergenic	1	0.55	3E-6	5.522878745280337	(African American)	   4.02	[2.31-5.73] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	8p23.3	8	1295964	DLGAP2	DLGAP2;LOC286083			9228;286083			rs17669535-C	rs17669535	0	17669535	intron;nearGene-3	0	0.97	6E-7	6.221848749616355	(African American)	  14.50	[8.80-20.20] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	14q31.3	14	85497512	FLRT2	LINC00911 - FLRT2	100996280	23768		       77.44	       32.56	rs8014131-A	rs8014131	0	8014131	Intergenic	1	0.42	3E-7	6.522878745280337	(African American)	   4.61	[2.85-6.37] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	9q31.3	9	111541399	ZNF483	ZNF483			158399			rs7873730-A	rs7873730	0	7873730	intron	0	0.88	2E-6	5.698970004336018	(African American)	   6.82	[4.00-9.64] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	5q13.1	5	67898641	PIK3R1	RPL21P55 - EEF1B2P2	100271170	1934		      289.48	      260.53	rs10940138-T	rs10940138	0	10940138	Intergenic	1	0.19	4E-7	6.397940008672037	(African American)	   5.64	[3.46-7.82] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	1q44	1	243671884	AKT3	AKT3			10000			rs320320-A	rs320320	0	320320	intron	0	0.80	1E-7	7	(European)	   1.66	[0.74-2.58] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q21.3	15	54088003	UNC13C	UNC13C			440279			rs11071033-T	rs11071033	0	11071033	intron	0	0.41	7E-6	5.154901959985742	(European)	   1.13	[0.42-1.85] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	9q31.3	9	111539305	ZNF483	ZNF483			158399			rs10441737-T	rs10441737	0	10441737	intron	0	.64	4E-15	14.39794000867204	(European)	   2.78	[4.31-5.94] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
08/28/2013	23599027	Demerath EW	04/17/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23599027	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q22.2	15	60608764	RORA	RORA			6095			rs980000-T	rs980000	0	980000	intron	0	0.26	2E-6	5.698970004336018	(African American)	   4.69	[2.75-6.63] unit increase	Affymetrix & Illumina [NR] (imputed)	N
08/30/2013	23594818	Ikeda M	04/17/2013	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/23594818	Evidence for shared genetic risk between methamphetamine-induced psychosis and schizophrenia.	Methamphetamine dependence	236 Japanese ancestry cases, 864 Japanese ancestry controls		8p22	8	14996272	SGCZ,MIR383,TUSC3	SGCZ			137868			rs4427170-T	rs4427170	0	4427170	intron	0	0.3947	4E-6	5.397940008672037		   1.63	[NR] 	Affymetrix [244,224]	N
08/30/2013	23594818	Ikeda M	04/17/2013	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/23594818	Evidence for shared genetic risk between methamphetamine-induced psychosis and schizophrenia.	Psychosis (methamphetamine induced)	193 methamphetamine-dependent cases, 41 methamphetamine-dependent controls		15q25.3	15	86520858	AGBL1,KLHL25,LINC00052	AGBL1			123624			rs12591257-A	rs12591257	0	12591257	intron	0	0.817	4E-6	5.397940008672037		   5.26	[NR] 	Affymetrix [244,224]	N
08/06/2014	24429156	Noth I	04/17/2013	Lancet Respir Med	http://www.ncbi.nlm.nih.gov/pubmed/24429156	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry patients, 542 European ancestry controls	868 European ancestry patients, 1,389 European ancestry controls	11p15.5	11	1219991	MUC5B, MUC5AC, TOLLIP	MUC5AC - MUC5B	4586	727897		       18.85	        3.07	rs35705950-T	rs35705950	0	35705950	Intergenic	1	0.14	2E-50	49.69897000433602		   2.43	[2.13-2.77] 	Affymetrix [10,601,812] (imputed)	N
08/06/2014	24429156	Noth I	04/17/2013	Lancet Respir Med	http://www.ncbi.nlm.nih.gov/pubmed/24429156	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry patients, 542 European ancestry controls	868 European ancestry patients, 1,389 European ancestry controls	14q21.3	14	47571172	MDGA2	MDGA2			161357			rs7144383-G	rs7144383	0	7144383	intron	0	0.11	4E-6	5.397940008672037		   1.44	[1.23-1.69] 	Affymetrix [10,601,812] (imputed)	N
08/06/2014	24429156	Noth I	04/17/2013	Lancet Respir Med	http://www.ncbi.nlm.nih.gov/pubmed/24429156	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry patients, 542 European ancestry controls	868 European ancestry patients, 1,389 European ancestry controls	17q21.31	17	45847931	SPPL2C, CRHR1, MAPT, STH, KANSL1	MAPT-AS1			100128977			rs17690703-C	rs17690703	0	17690703	intron	0	0.76	6E-9	8.221848749616356		   1.43	[1.27-1.61] 	Affymetrix [10,601,812] (imputed)	N
08/06/2014	24429156	Noth I	04/17/2013	Lancet Respir Med	http://www.ncbi.nlm.nih.gov/pubmed/24429156	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry patients, 542 European ancestry controls	868 European ancestry patients, 1,389 European ancestry controls	11p15.5[rs5743894]; 11p15.5[rs111521887]			TOLLIP, MUC5B, BRSK2	 - 						rs5743894-G	rs5743894, rs111521887					0.18	1E-12			   1.49	[1.33-1.68] 	Affymetrix [10,601,812] (imputed)	N
08/06/2014	24429156	Noth I	04/17/2013	Lancet Respir Med	http://www.ncbi.nlm.nih.gov/pubmed/24429156	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry patients, 542 European ancestry controls	868 European ancestry patients, 1,389 European ancestry controls	11p15.5	11	1304599	TOLLIP, MUC5B, BRSK2	TOLLIP			54472			rs5743890-A	rs5743890	0	5743890	intron	0	0.83	3E-11	10.52287874528034		   1.64	[1.41-1.92] 	Affymetrix [10,601,812] (imputed)	N
08/29/2013	23646285	Khor SS	04/16/2013	PeerJ	http://www.ncbi.nlm.nih.gov/pubmed/23646285	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		2q21.2	2	133508430	NCKAP5	NCKAP5			344148			rs16826005-G	rs16826005	0	16826005	intron	0	0.319	1E-7	7	(recessive)	   3.52	[2.17-5.70] 	Affymetrix [508,366] (Imputed)	N
08/29/2013	23646285	Khor SS	04/16/2013	PeerJ	http://www.ncbi.nlm.nih.gov/pubmed/23646285	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		15q14	15	38172673	SPRED1	TMCO5A - SPRED1	145942	161742		      221.25	       80.05	rs16966389-G	rs16966389	0	16966389	Intergenic	1	0.642	7E-7	6.154901959985743	(dominant)	   2.73	[1.82-4.10] 	Affymetrix [508,366] (Imputed)	N
08/29/2013	23646285	Khor SS	04/16/2013	PeerJ	http://www.ncbi.nlm.nih.gov/pubmed/23646285	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		9q34.11	9	129125837	CART,PPP2R4	PPP2R4			5524			rs10988217-G	rs10988217	0	10988217	intron	0	0.233	3E-6	5.522878745280337	(recessive)	   3.85	[2.11-7.04] 	Affymetrix [508,366] (Imputed)	N
08/29/2013	23646285	Khor SS	04/16/2013	PeerJ	http://www.ncbi.nlm.nih.gov/pubmed/23646285	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		5p15.31	5	9756217	TAS2R1	LOC285692			285692			rs7725217-C	rs7725217	0	7725217	intron	0	0.223	1E-6	5.999999999999999	(dominant)	   2.66	[1.78-3.98] 	Affymetrix [508,366] (Imputed)	N
08/29/2013	23646285	Khor SS	04/16/2013	PeerJ	http://www.ncbi.nlm.nih.gov/pubmed/23646285	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		2p16.1	2	60232671	BCL11A	RNA5SP94 - MIR4432	100873327	100616473		      537.80	      154.69	rs359268-C	rs359268	0	359268	Intergenic	1	0.431	1E-6	5.999999999999999	(recessive)	   2.81	[1.84-4.30] 	Affymetrix [508,366] (Imputed)	N
08/28/2013	23592221	Rahmani M	04/16/2013	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/23592221	Shared genetic factors for age at natural menopause in Iranian and European women.	Menopause (age at onset)	165 Iranian ancestry women with early menopause, 187 Iranian ancestry women with late menopause	573 Iranian ancestry women, 38,968 European ancestry women	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [694,326] (pooled)	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	3q26.2	3	169800667	LRRC34	LRRC34			151827			rs6793295-C	rs6793295	0	6793295	missense	0	0.26	8E-13	12.09691001300806		   1.30	[1.19-1.42] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	4q22.1	4	88890044	FAM13A	FAM13A			10144			rs2609255-G	rs2609255	0	2609255	intron	0	0.21	2E-11	10.69897000433602		   1.29	[1.18-1.42] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-A	rs2736100	0	2736100	intron	0	0.49	2E-19	18.69897000433602		   1.37	[1.27-1.49] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p24.3	6	7562999	DSP	DSP			1832			rs2076295-G	rs2076295	0	2076295	intron	0	0.44	1E-19	19		   1.43	[1.32-1.55] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	7q22.1	7	99995723	Intergenic	LOC100128334			100128334			rs4727443-C	rs4727443	0	4727443		0	0.39	1E-8	8		   1.30	[1.20-1.41] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	8p23.2	8	4760288	NR	CSMD1			64478			rs1379326-C	rs1379326	0	1379326	intron	0	0.26	1E-7	7		   1.78	[1.45-2.19] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	10q24.33	10	103913084	OBFC1	OBFC1			79991			rs11191865-A	rs11191865	0	11191865	intron	0	0.49	2E-8	7.698970004336018		   1.25	[1.15-1.35] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	11p15.5	11	1100037	MUC2	MUC2			4583			rs7934606-T	rs7934606	0	7934606		0	0.42	7E-34	33.15490195998574		   1.52	[1.40-1.65] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	13q34	13	112882313	ATP11A	ATP11A			23250			rs1278769-G	rs1278769	0	1278769	UTR-3	0	0.76	7E-9	8.154901959985743		   1.27	[1.14-1.39] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	15q15.1	15	40425103	Intergenic	IVD			3712			rs2034650-A	rs2034650	0	2034650	intron	0	0.51	1E-11	11		   1.30	[1.19-1.41] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	17q21.31	17	45979401	MAPT	MAPT			4137			rs1981997-G	rs1981997	0	1981997	intron	0	0.77	9E-14	13.04575749056067		   1.41	[1.28-1.56] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	19p13.3	19	4717660	DPP9	DPP9			91039			rs12610495-G	rs12610495	0	12610495	intron	0	0.29	2E-12	11.69897000433602		   1.29	[1.18-1.41] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	6p21.32	6	32222251	NR	NOTCH4			4855			rs3132946-A	rs3132946	0	3132946	intron	0	0.12	8E-6	5.096910013008055		   1.38	[1.21-1.57] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	8q24.12	8	119941633	NR	DEPTOR			64798			rs7005380-G	rs7005380	0	7005380	intron	0	0.63	2E-7	6.698970004336019		   1.25	[1.15-1.37] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	10q21.3	10	66465128	NR	CTNNA3			29119			rs2441727-G	rs2441727	0	2441727	intron	0	0.05	1E-6	5.999999999999999		   1.35	[1.15-1.60] 	Illumina [439,828]	N
11/01/2013	23583980	Fingerlin TE	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583980	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease 	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	15q25.3	15	85524075	NR	AKAP13;LOC101929656			11214;101929656			rs6496044-G	rs6496044	0	6496044	intron;intron	0	0.33	2E-6	5.698970004336018		   1.25	[1.15-1.36] 	Illumina [439,828]	N
08/23/2013	23583978	Monda KL	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583978	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	1q25.2	1	177920345	SEC16B	BRINP2 - SEC16B	57795	89866		      637.92	        8.76	rs543874-G	rs543874	0	543874	Intergenic	1	0.25	2E-13	12.69897000433602	(African American and Sub-Saharan)	    .06	[0.044-0.076] unit increase	Illumina and Affymetrix [3,283,202] (Imputed)	N
08/23/2013	23583978	Monda KL	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583978	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	2p23.3	2	24894108	ADCY3	ADCY3			109			rs7586879-T	rs7586879	0	7586879	intron	0	0.34	4E-8	7.397940008672037	(African American and Sub-Saharan)	    .05	[0.029-0.065] unit increase	Illumina and Affymetrix [3,283,202] (Imputed)	N
08/23/2013	23583978	Monda KL	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583978	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	4p12	4	45182425	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      237.43	      140.83	rs348495-G	rs348495	0	348495	Intergenic	1	0.34	2E-10	9.698970004336017	(African American and Sub-Saharan)	    .05	[0.035-0.067] unit increase	Illumina and Affymetrix [3,283,202] (Imputed)	N
08/23/2013	23583978	Monda KL	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583978	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	16q12.2	16	53794154	FTO	FTO			79068			rs17817964-T	rs17817964	0	17817964	intron	0	0.12	1E-10	10	(African American and Sub-Saharan)	    .07	[0.051-0.095] unit increase	Illumina and Affymetrix [3,283,202] (Imputed)	N
08/23/2013	23583978	Monda KL	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583978	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	5q33.2	5	154163906	GALNT10	MFAP3 - GALNT10	4238	55568		      106.45	       26.83	rs7708584-A	rs7708584	0	7708584	Intergenic	1	0.42	5E-14	13.30102999566398		    .02	[0.012-0.030] unit increase	Illumina and Affymetrix [3,283,202] (Imputed)	N
08/23/2013	23583978	Monda KL	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583978	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	6q16.1	6	96971722	KLHL32	KLHL32			114792			rs974417-C	rs974417	0	974417	intron	0	0.85	6E-6	5.221848749616356		    .00	[-0.00784-0.01764] unit increase	Illumina and Affymetrix [3,283,202] (Imputed)	N
08/23/2013	23583978	Monda KL	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583978	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	7p15.2	7	25910925	MIR148A, NFE2L3	UBA52P1 - MIR148A	7312	406940		      220.86	       38.99	rs10261878-C	rs10261878	0	10261878	Intergenic	1	0.94	1E-10	10		    .03	[0.022-0.042] unit increase	Illumina and Affymetrix [3,283,202] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	14q11.2	14	23392602	MYH6	MYH6			4624			rs365990-G	rs365990	0	365990	missense	0	0.353	5E-45	44.30102999566397		    .56	[0.47-0.66] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	6	121810339	GJA1	RPL23AP48 - HMGB3P18	728567	644502		      129.88	       47.84	rs1015451-C	rs1015451	0	1015451	Intergenic	1	0.102	1E-33	32.99999999999999		    .71	[0.57-0.85] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	7q22.1	7	100899511	ACHE	ACHE - RPS29P15	43	100271241		        2.60	       28.83	rs13245899-G	rs13245899	0	13245899	Intergenic	1	0.195	8E-27	26.09691001300805		    .45	[0.34-0.55] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	1q32.2	1	207767508	CD46	CD46			4179			rs11118555-A	rs11118555	0	11118555	intron	0	0.124	4E-26	25.39794000867203		    .61	[0.48-0.75] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	11q12.2	11	61803910	FADS1	FADS1			3992			rs174549-A	rs174549	0	174549	intron	0	0.31	1E-22	22		    .36	[0.27-0.45] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	6	118346359	SLC35F1	RPL29P4 - CEP85L	387101	387119		      346.78	      114.41	rs11153730-T	rs11153730	0	11153730	Intergenic	1	0.509	8E-21	20.09691001300805		    .38	[0.29-0.47] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12p12.1	12	24617944	LINC00477,C12orf67	KNOP1P1 - RPL21P102	100129937	100271432		       32.83	       24.71	rs17287293-A	rs17287293	0	17287293	Intergenic	1	0.85	3E-20	19.52287874528034		    .44	[0.32-0.57] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	20q11.23	20	38215636	KIAA1755	KIAA1755			85449			rs6127471-C	rs6127471	0	6127471	intron	0	0.54	5E-29	28.30102999566398		    .43	[0.34-0.52] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q31.2	2	178856319	CCDC141	CCDC141			285025			rs17362588-A	rs17362588	0	17362588	missense	0	0.114	4E-26	25.39794000867203		    .74	[0.59-0.89] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12p11.1	12	33424055	SYT10	SYT10			341359			rs7980799-A	rs7980799	0	7980799	intron	0	0.401	6E-24	23.22184874961635		    .38	[0.29-0.47] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	15q24.1	15	73373165	HCN4	HCN4 - C15orf60	10021	283677		        3.90	       69.99	rs4489968-T	rs4489968	0	4489968	Intergenic	1	0.843	4E-20	19.39794000867203		    .51	[0.40-0.63] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	3q26.33	3	179455191	GNB4	GNB4 - MTHFD2P7	59345	442098		        3.61	        9.16	rs7612445-G	rs7612445	0	7612445	Intergenic	1	0.816	2E-14	13.69897000433602		    .36	[0.24-0.48] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	14q31.3	14	85343567	FLRT2	RNU3P3 - LINC00911	26843	100996280		       71.52	       50.31	rs17796783-T	rs17796783	0	17796783	Intergenic	1	0.716	3E-13	12.52287874528034		    .33	[0.24-0.43] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	7q33	7	136957887	CHRM2	CHRM2;LOC349160			1129;349160			rs2350782-C	rs2350782	0	2350782	intron;intron	0	0.116	1E-12	12		    .51	[0.35-0.66] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	5q35.1	5	173237160	NKX2-5	NKX2-5			1482			rs6882776-G	rs6882776	0	6882776	nearGene-5	0	0.68	2E-12	11.69897000433602		    .30	[0.20-0.40] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	7q21.3	7	93920284	GNG11	GNG11			2791			rs180242-T	rs180242	0	180242	nearGene-5	0	0.333	7E-12	11.15490195998574		    .32	[0.21-0.42] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q37.1	2	231406573	B3GNT7	B3GNT7 - ZBTB8OSP2	93010	729898		        5.41	       27.20	rs13030174-A	rs13030174	0	13030174	Intergenic	1	0.733	1E-10	10		    .30	[0.20-0.40] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	3q26.31	3	172067378	FNDC3B	FNDC3B			64778			rs9647379-C	rs9647379	0	9647379	intron	0	0.4	1E-9	8.999999999999998		    .21	[0.11-0.30] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12q23.3	12	106755644	RFX4	RFX4;LOC100287944			5992;100287944			rs2067615-A	rs2067615	0	2067615	intron;intron	0	0.49	2E-9	8.698970004336019		    .28	[0.19-0.36] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12q12	12	38712929	CPNE8	CPNE8			144402			rs826838-C	rs826838	0	826838	intron	0	0.443	4E-9	8.397940008672036		    .23	[0.15-0.32] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q32.1	2	187468337	TFPI	TFPI			7035			rs4140885-A	rs4140885	0	4140885	intron	0	0.317	5E-8	7.30102999566398		    .22	[0.12-0.31] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	16p13.3	16	6846127	A2BP1	RBFOX1			54715			rs11645781-G	rs11645781	0	11645781	intron	0	0.696	2E-7	6.698970004336019		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	5q31.2	5	137859073	MYOT	LOC101928005			101928005			rs7722600-A	rs7722600	0	7722600	ncRNA	0	0.815	3E-7	6.522878745280337		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q31.2	2	177815704	PDE11A	PDE11A			50940			rs13413635-G	rs13413635	0	13413635	intron	0	0.033	3E-7	6.522878745280337		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12q24.11	12	110717726	PPP1CC	PPP1CC			5501			rs11065706-T	rs11065706	0	11065706	intron	0	0.756	6E-7	6.221848749616355		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6p21.2	6	36824281	CPNE5	CPNE5			57699			rs236373-C	rs236373	0	236373	intron	0	0.727	9E-7	6.045757490560675		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	19q13.2	19	38697472	ACTN4	ACTN4			81			rs11083475-G	rs11083475	0	11083475	intron	0	0.537	2E-6	5.698970004336018		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	4q31.22	4	146578186	SLC10A7	MIR7849 - POU4F2	102465837	5458		      169.50	       60.71	rs10213084-G	rs10213084	0	10213084	Intergenic	1	0.869	4E-6	5.397940008672037		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	3p21.1	3	53344218	DCP1A	DCP1A			55802			rs2029213-C	rs2029213	0	2029213	intron	0	0.639	7E-6	5.154901959985742		NR	NR	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	6	121460244	GJA1	GJA1 - SLC25A5P7	2697	442255		       10.52	      193.50	rs11154027-C	rs11154027	0	11154027	Intergenic	1	0.567	7E-12	11.15490195998574	(Conditional on rs1015451, rs17083533)	    .32	[0.22-0.42] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	6q22.31	6	121409576	GJA1	HMGN2P29 - GJA1	100874472	2697		         .76	       26.02	rs17083533-A	rs17083533	0	17083533	Intergenic	1	0.077	1E-8	8	(Conditional on rs1015451, rs11154027)	    .74	[0.49-0.99] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/20/2013	23583979	den Hoed M	04/14/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23583979	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	1q32.2	1	207955720	CD34	CD34 - PLXNA2	947	5362		       44.38	       66.52	rs11578508-A	rs11578508	0	11578508	Intergenic	1	0.665	4E-10	9.397940008672037	(Conditonal on rs11118555)	    .51	[0.39-0.63] unit increase	Illumina and Affymetrix [2,516,789] (Imputed)	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	7p13	7	44189469	GCK	GCK			2645			rs1799884-A	rs1799884	0	1799884	nearGene-5	0	NR	5E-18	17.30102999566398	(FPG)	    .06	[0.049-0.077] mmol-1 increase	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	11q14.3	11	92965261	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      466.30	        4.36	rs10830962-C	rs10830962	0	10830962	Intergenic	1	NR	5E-13	12.30102999566398	(FPG)	    .04	[0.029-0.053] mmol-1 increase	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	NR	6E-14	13.22184874961636	(FPG)	    .06	[0.045-0.077] mmol-1 decrease	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	6p22.3	6	20641105	CDKAL1	CDKAL1			54901			rs9348440-A	rs9348440	0	9348440	intron	0	NR	3E-19	18.52287874528033	(1-hPG)	    .25	[0.19-0.30] mmol-1 increase	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	7p13	7	44189469	GCK	GCK			2645			rs1799884-A	rs1799884	0	1799884	nearGene-5	0	NR	3E-9	8.522878745280337	(1-hPG)	    .21	[0.14-0.28] mmol-1 increase	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	11q14.3	11	92965261	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      466.30	        4.36	rs10830962-C	rs10830962	0	10830962	Intergenic	1	NR	3E-12	11.52287874528034	(1-hPG)	    .19	[0.14-0.24] mmol-1 increase	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.11	12	110976657	MYL2	MYL2 - CUX2	4633	23316		       56.06	       57.37	rs12229654-G	rs12229654	0	12229654	Intergenic	1	NR	9E-13	12.04575749056067	(1-hPG)	    .28	[0.20-0.35] mmol-1 decrease	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	NR	1E-16	16	(1-hPG)	    .32	[0.24-0.40] mmol-1 decrease	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	12	112927816	OAS1	OAS1 - OAS3	4938	4940		        7.91	       10.63	rs11066453-G	rs11066453	0	11066453	Intergenic	1	NR	5E-9	8.301029995663981	(1-hPG)	    .24	[0.16-0.32] mmol-1 decrease	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	7p13	7	44189469	GCK	GCK			2645			rs1799884-A	rs1799884	0	1799884	nearGene-5	0	NR	3E-10	9.522878745280336	(2-hPG)	    .16	[0.11-0.21] mmol-1 increase	Affymetrix [357,789] 	N
08/23/2013	23575436	Go MJ	04/11/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575436	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	NR	6E-9	8.221848749616356	(2-hPG)	    .17	[0.11-0.22] mmol-1 decrease	Affymetrix [357,789] 	N
08/13/2013	23585552	Kirin M	04/11/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23585552	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	1q21.3	1	150968149	CERS2,SETBD1,CTSS,MCL1,ANXA9,PRUNE,ARNT,GOLPH3L, CTSK, FAM63A,HORMAD1,ADAMTSL4,ENSA	CERS2			29956			rs267738-A	rs267738	0	267738	missense	0	0.275	1E-7	7		   1.23	[1.14-1.33] 	Illumina [299,737]	N
08/13/2013	23585552	Kirin M	04/11/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23585552	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	8q24.3	8	143611669	TSTA3,PYCRL	PYCRL - TSTA3	65263	7264		        2.06	         .95	rs2045084-G	rs2045084	0	2045084	Intergenic	1	0.425	3E-6	5.522878745280337		   1.16	[1.09-1.24] 	Illumina [299,737]	N
08/13/2013	23585552	Kirin M	04/11/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23585552	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	18q11.2	18	26034739	SS18,PSMA8,TAF4B	SS18			6760			rs12960119-G	rs12960119	0	12960119	intron	0	0.075	2E-6	5.698970004336018		   1.26	[1.14-1.39] 	Illumina [299,737]	N
08/13/2013	23585552	Kirin M	04/11/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23585552	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	4p15.32	4	16512785	LDB2	LDB2			9079			rs955943-A	rs955943	0	955943	intron	0	0.067	5E-6	5.301029995663981		   1.41	[1.21-1.64] 	Illumina [299,737]	N
08/24/2013	23571587	Reitz C	04/10/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23571587	Variants in the ATP-binding cassette transporter (ABCA7), apolipoprotein E ϵ4,and the risk of late-onset Alzheimer disease in African Americans.	Alzheimer's disease (late onset)	1,968 African American cases, 3,928 African American controls		19p13.3	19	1050421	ABCA7, HMHA1, GRIN3B	ABCA7			10347			rs115550680-G	rs115550680	0	115550680	intron	0	0.07	2E-9	8.698970004336019		   1.79	[1.47-2.12] 	Illumina [17,332,474] (Imputed)	N
08/24/2013	23571587	Reitz C	04/10/2013	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/23571587	Variants in the ATP-binding cassette transporter (ABCA7), apolipoprotein E ϵ4,and the risk of late-onset Alzheimer disease in African Americans.	Alzheimer's disease (late onset)	1,968 African American cases, 3,928 African American controls		5q35.2	5	174587111	Intergenic	SUMO2P6 - HIGD1AP3	100127922	100859920		       25.05	       45.82	rs145848414-A	rs145848414	0	145848414	Intergenic	1	0.04	7E-8	7.154901959985742		   2.29	[1.69-3.09] 	Illumina [17,332,474] (Imputed)	N
08/17/2013	23575227	Urbanek M	04/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575227	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Adiposity in newborns	1,095 Afro-Caribbean ancestry individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	3	157080684	LEKR1, CCNL1	KLF3P2 - LINC00880	100124394	339894		      102.56	         .98	rs1482853-C	rs1482853	0	1482853	Intergenic	1	0.620	6E-21	20.22184874961635	(Sum of Skinfolds, Model 2)	    .06	[0.036-0.076] mm increase	Illumina [565,808] (Imputed)	N
08/17/2013	23575227	Urbanek M	04/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575227	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Adiposity in newborns	1,095 Afro-Caribbean ancestry individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	3	157080684	LEKR1, CCNL1	KLF3P2 - LINC00880	100124394	339894		      102.56	         .98	rs1482853-C	rs1482853	0	1482853	Intergenic	1	0.620	3E-13	12.52287874528034	(Fat Mass, Model 2)	    .47	[0.28-0.66] % increase	Illumina [565,808] (Imputed)	N
08/17/2013	23575227	Urbanek M	04/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575227	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Adiposity in newborns	1,095 Afro-Caribbean ancestry individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	3	157080684	LEKR1, CCNL1	KLF3P2 - LINC00880	100124394	339894		      102.56	         .98	rs1482853-C	rs1482853	0	1482853	Intergenic	1	0.620	7E-8	7.154901959985742	(Birthweight, Model 2)	  46.00	[22.09-69.91] gm increase	Illumina [565,808] (Imputed)	N
08/17/2013	23575227	Urbanek M	04/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23575227	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Adiposity in newborns	1,095 Afro-Caribbean ancestry individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	3	157079820	LEKR1, CCNL1	KLF3P2 - LINC00880	100124394	339894		      101.70	        1.85	rs17451107-T	rs17451107	0	17451107	Intergenic	1	0.55	1E-6	5.999999999999999	(Sum of skinfolds, Model 3, Thai)	    .06	[NR] mm increase	Illumina [565,808] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	7q34	7	141805287	CLEC5A, LOC136242 KIAA1147, MGAM,OR9A4, SSBP1,TAS2R3, TAS2R4,TAS2R5, TAS2R38, WEE2	MTND1P3 - MYL6P4	100288984	642627		         .66	        6.62	rs145241704-T	rs145241704	0	145241704	Intergenic	1	0.952	2E-7	6.698970004336019		    .14	[0.09-0.196] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	18q22.3	18	75338379	TSHZ1,C18orf62	TSHZ1 - SMIM21	10194	284274		       48.43	       71.49	rs62090893-G	rs62090893	0	62090893	Intergenic	1	0.921	3E-7	6.522878745280337		    .09	[0.052-0.118] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	Xp11.4	23	38140399	SYTL5	MIR548AJ2 - SRPX	100616252	8406		      116.41	        8.94	rs56156506-A	rs56156506	0	56156506	Intergenic	1	0.813	1E-6	5.999999999999999		    .05	[0.031-0.075] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	10q23.1	10	85934535	GRID1	GRID1			2894			rs76765968-T	rs76765968	0	76765968	intron	0	0.856	2E-6	5.698970004336018		    .06	[0.037-0.091] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	10q22.2	10	75538851	Intergenic	C10orf11			83938			rs2043090-A	rs2043090	0	2043090	intron	0	0.959	3E-6	5.522878745280337		    .12	[0.068-0.17] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	5q15	5	94812833	MCTP1	MCTP1			79772			rs469339-A	rs469339	0	469339	intron	0	0.977	3E-6	5.522878745280337		    .14	[0.083-0.205] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	7p21.3	7	12153806	Intergenic	THSD7A - TMEM106B	221981	54664		      321.61	       57.40	rs114945094-G	rs114945094	0	114945094	Intergenic	1	0.959	4E-6	5.397940008672037		    .14	[0.078-0.192] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	8q22.1	8	95492244	CNBD1	LOC100616530			100616530			rs77742018-A	rs77742018	0	77742018	intron	0	0.946	4E-6	5.397940008672037		    .12	[0.068-0.166] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	1p31.1	1	78762271	Intergenic	RPL23P3 - ELTD1	100130630	64123		       95.57	      127.49	rs1937020-T	rs1937020	0	1937020	Intergenic	1	0.681	4E-6	5.397940008672037		    .04	[0.023-0.059] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	10p13	10	12660570	CAMK1D	CAMK1D			57118			rs75263140-A	rs75263140	0	75263140	intron	0	0.974	6E-6	5.221848749616356		    .17	[0.098-0.246] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	16q23.1	16	79152989	WWOX	WWOX			51741			rs8050187-T	rs8050187	0	8050187	intron	0	0.736	7E-6	5.154901959985742		    .04	[0.024-0.064] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	2q36.1	2	222488727	SGPP2	SGPP2			130367			rs17496827-C	rs17496827	0	17496827	intron	0	0.55	7E-6	5.154901959985742		    .04	[0.024-0.06] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	1q25.2	1	180161588	QSOX1,CEP350	QSOX1			5768			rs55946907-C	rs55946907	0	55946907	intron	0	0.901	9E-6	5.045757490560675		    .07	[0.037-0.095] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	13q31.1	13	84975601	Intergenic	MTND5P3 - LINC00351	100873210	100874137		      451.70	      388.00	rs9531686-T	rs9531686	0	9531686	Intergenic	1	0.571	9E-6	5.045757490560675		    .04	[0.022-0.054] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Anorexia nervosa	237 female cases, 2,287 female controls	NR	1p36.13	1	18879840	ALDH4A1,TAS1R2	ALDH4A1			8659			rs28441017-G	rs28441017	0	28441017	intron	0	0.827	9E-6	5.045757490560675		    .09	[0.049-0.123] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		2p24.2	2	18653385	NT5C1B	NT5C1B - FLJ41481	93034	400945		       63.81	      333.85	rs1445130-A	rs1445130	0	1445130	Intergenic	1	0.864	1E-7	7		    .06	[0.036-0.076] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		8q12.3	8	62346358	NKAIN3	NKAIN3			286183			rs142014203-T	rs142014203	0	142014203	intron	0	0.974	9E-7	6.045757490560675		    .13	[0.075-0.177] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		21q21.1	21	18159125	CHODL, TMPRSS15	CHODL			140578			rs77600076-A	rs77600076	0	77600076	intron	0	0.971	1E-6	5.999999999999999		    .12	[0.075-0.173] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		16p13.13	16	11293103	PRM1, PRM2, PRM3,SOCS1, TNP2	PRM1 - MIR548H2	5619	100313773		       11.77	       13.34	rs117096873-C	rs117096873	0	117096873	Intergenic	1	0.974	2E-6	5.698970004336018		    .13	[0.076-0.182] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		1p32.2	1	57854156	DAB1	DAB1			1600			rs985795-T	rs985795	0	985795	intron	0	0.946	2E-6	5.698970004336018		    .09	[0.055-0.133] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		22q12.2	22	31042375	SMTN	TUG1 - SMTN	55000	6525		       62.98	       38.92	rs111383589-C	rs111383589	0	111383589	Intergenic	1	0.892	2E-6	5.698970004336018		    .09	[0.052-0.122] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		6q23.3	6	138104895	PERP	PERP			64065			rs1556640-T	rs1556640	0	1556640	intron	0	0.88	2E-6	5.698970004336018		    .08	[0.044-0.106] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		5q31.1	5	134985856	CATSPER3,PITX1,PCBD2	CATSPER3			347732			rs299362-A	rs299362	0	299362	intron	0	0.886	3E-6	5.522878745280337		    .06	[0.037-0.087] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		4q13.1	4	63027560	Intergenic	EXOC5P1 - LARP1BP1	644548	644578		      208.77	      322.46	rs145379083-G	rs145379083	0	145379083	Intergenic	1	0.51	3E-6	5.522878745280337		    .04	[0.021-0.053] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		15q25.3	15	85155976	PDE8A	PDE8A - NIFKP8	5151	642907		       16.83	       25.18	rs8040855-C	rs8040855	0	8040855	Intergenic	1	0.634	3E-6	5.522878745280337		    .04	[0.021-0.049] unit increase	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		6q12	6	66943386	Intergenic	NUFIP1P - RNA5SP208	89761	100873468		      848.44	      523.85	rs28631020-G	rs28631020	0	28631020	Intergenic	1	0.925	3E-6	5.522878745280337		    .08	[0.047-0.113] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		19q12	19	29412770	VSTM2B	LOC284395			284395			rs12986207-G	rs12986207	0	12986207	intron	0	0.817	4E-6	5.397940008672037		    .04	[0.024-0.064] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		4q22.1	4	87154977	AFF1,KLHL8,C4orf36,HSD17B13,HSD17B11	TECRP1 - KLHL8	442777	57563		      204.87	        5.13	rs115694618-A	rs115694618	0	115694618	Intergenic	1	0.979	4E-6	5.397940008672037		    .12	[0.07-0.176] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		2p16.2	2	53529404	Intergenic	MIR4431 - ASB3	100616431	51130		      826.79	      140.58	rs56148675-T	rs56148675	0	56148675	Intergenic	1	0.942	5E-6	5.301029995663981		    .08	[0.043-0.109] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		5q35.3	5	178381674	COL23A1	COL23A1			91522			rs2910124-C	rs2910124	0	2910124	intron	0	0.858	6E-6	5.221848749616356		    .06	[0.034-0.084] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		1p13.2	1	113683521	MAGI3,PHTF1	MAGI3			260425			rs61742849-G	rs61742849	0	61742849	missense	0	0.975	6E-6	5.221848749616356		    .18	[0.1-0.26] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		4p15.1	4	31154556	Intergenic	PCDH7 - MAPRE1P2	5099	642305		        7.76	     1854.71	rs74879986-G	rs74879986	0	74879986	Intergenic	1	0.975	6E-6	5.221848749616356		    .14	[0.079-0.201] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		3q22.1	3	133542030	CDV3	BFSP2-AS1 - CDV3	85003	55573		       86.25	       31.56	rs11708304-C	rs11708304	0	11708304	Intergenic	1	0.853	6E-6	5.221848749616356		    .06	[0.034-0.084] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		15q25.3	15	87166835	Intergenic	AGBL1-AS1 - LINC00052	727915	145978		      849.87	      410.09	rs8024343-A	rs8024343	0	8024343	Intergenic	1	0.831	6E-6	5.221848749616356		    .05	[0.025-0.065] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		5q33.1	5	151206306	CCDC69,GM2A	CCDC69			26112			rs7724774-G	rs7724774	0	7724774	intron	0	0.884	7E-6	5.154901959985742		    .05	[0.03-0.078] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		3q26.1	3	164137281	Intergenic	RNU7-82P - MIR1263	100151679	100302148		      667.02	       34.19	rs78661745-C	rs78661745	0	78661745	Intergenic	1	0.908	7E-6	5.154901959985742		    .07	[0.039-0.097] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		8p23.1	8	10228901	MSRA	MSRA			4482			rs6999631-C	rs6999631	0	6999631	intron	0	0.965	8E-6	5.096910013008055		    .09	[0.051-0.129] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Bulimia nervosa	151 female cases, 2,291 female controls		21q22.11	21	32997453	OLIG2	C21orf62 - OLIG2	56245	10215		      183.71	       28.46	rs117124364-C	rs117124364	0	117124364	Intergenic	1	0.977	9E-6	5.045757490560675		    .16	[0.089-0.231] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		13q12.13	13	25433839	ATP8A2	ATP8A2			51761			rs7322916-G	rs7322916	0	7322916	intron	0	0.501	8E-7	6.096910013008056		    .09	[0.054-0.124] unit increase	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		1q21.3	1	152345685	FLG,FLG2,CRNN	FLG-AS1			339400			rs3120667-A	rs3120667	0	3120667	intron	0	0.845	2E-6	5.698970004336018		    .12	[0.069-0.167] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		6p21.2	6	39149922	C6orf64,KCNK5	TRNAI25			100189401			rs2115200-T	rs2115200	0	2115200		0	0.768	2E-6	5.698970004336018		    .10	[0.057-0.139] unit increase	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		10p13	10	12833208	CAMK1D	CAMK1D;LOC283070			57118;283070			rs10906233-C	rs10906233	0	10906233	UTR-3;ncRNA	0	0.979	4E-6	5.397940008672037		    .29	[0.17-0.41] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		20p12.1	20	15140098	MACROD2	MACROD2			140733			rs11087123-A	rs11087123	0	11087123	intron	0	0.738	4E-6	5.397940008672037		    .12	[0.069-0.171] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		5q14.1	5	81110747	RASGRF2	RASGRF2			5924			rs138206701-A	rs138206701	0	138206701	intron	0	0.98	4E-6	5.397940008672037		    .43	[0.24-0.61] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		16p13.13	16	10569770	TEKT5,EMP2	EMP2			2013			rs2221433-G	rs2221433	0	2221433	intron	0	0.682	5E-6	5.301029995663981		    .09	[0.05-0.124] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders	543 female cases, 1,116 female controls		4q23	4	99474257	ADH7,C4orf17	ADH7 - C4orf17	131	84103		       38.75	       36.75	rs148915469-C	rs148915469	0	148915469	Intergenic	1	0.979	8E-6	5.096910013008055		    .28	[0.16-0.4] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		5q14.1	5	81110747	RASGRF2	RASGRF2			5924			rs138206701-A	rs138206701	0	138206701	intron	0	0.98	1E-7	7		    .33	[0.21-0.45] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		8q24.22	8	133766099	Intergenic	MTND2P7 - ZFAT	100873179	57623		       10.65	      711.69	rs74566133-C	rs74566133	0	74566133	Intergenic	1	0.969	7E-7	6.154901959985743		    .25	[0.15-0.35] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		2q37.1	2	231433365	NCL,PTMA,PDE6D	B3GNT7 - ZBTB8OSP2	93010	729898		       32.20	         .41	rs12475512-G	rs12475512	0	12475512	Intergenic	1	0.543	7E-7	6.154901959985743		    .11	[0.065-0.151] unit increase	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		3p14.3	3	58120049	DNASE1L3,FLNB	FLNB			2317			rs13077017-C	rs13077017	0	13077017	intron	0	0.71	1E-6	5.999999999999999		    .07	[0.044-0.102] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		2q36.3	2	227805859	SPHKAP,CCL20	SNRPGP8 - CCL20	100874409	6364		       27.12	        7.98	rs10175070-A	rs10175070	0	10175070	Intergenic	1	0.75	2E-6	5.698970004336018		    .12	[0.073-0.175] unit increase	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		3p12.3	3	76212669	Intergenic	ROBO2			6092			rs1516459-C	rs1516459	0	1516459	intron	0	0.968	3E-6	5.522878745280337		    .27	[0.16-0.38] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		10q21.3	10	68254473	ATOH7	ATOH7 - KRT19P4	220202	100128041		       22.36	        5.84	rs10998035-C	rs10998035	0	10998035	Intergenic	1	0.945	4E-6	5.397940008672037		    .15	[0.086-0.216] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		9q34.11	9	127741791	PKN3,SET,WDR34,ZDHHC12,ZER1	SH2D3C			10044			rs514024-A	rs514024	0	514024	cds-synon	0	0.572	5E-6	5.301029995663981		    .06	[0.036-0.086] unit increase	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		8p23.2	8	3298698	CSMD1	CSMD1			64478			rs142816172-C	rs142816172	0	142816172	intron	0	0.976	6E-6	5.221848749616356		    .27	[0.16-0.39] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		2p16.1	2	59899176	Intergenic	RNA5SP94 - MIR4432	100873327	100616473		      204.31	      488.19	rs145433814-G	rs145433814	0	145433814	Intergenic	1	0.976	6E-6	5.221848749616356		    .24	[0.14-0.34] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23568457	Wade TD	04/09/2013	Int J Eat Disord	http://www.ncbi.nlm.nih.gov/pubmed/23568457	Genetic variants associated with disordered eating.	Eating disorders (purging via substances) 	600 female cases, 1,921 female controls		3p23	3	30999011	GADL1	FNBP1P2 - CNN2P6	100419875	339897		      189.32	      182.74	rs1506203-G	rs1506203	0	1506203	Intergenic	1	0.849	8E-6	5.096910013008055		    .08	[0.048-0.118] unit decrease	Illumina [6,150,213] (Imputed)	N
08/07/2013	23572186	Zheng HF	04/09/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23572186	Meta-analysis of genome-wide studies identifies MEF2C SNPs associated with bone mineral density at forearm.	Bone mineral density	5,866 European ancestry individuals	715 Mexican American individuals	5q14.3	5	88842914	MEF2C	MEF2C			4208			rs11951031-T	rs11951031	0	11951031	intron	0	0.06	9E-9	8.045757490560675		    .20	[0.12-0.28] unit decrease	Illumina [NR] (imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	16q12.2	16	53785981	FTO	FTO			79068			rs11075990-G	rs11075990	0	11075990	intron	0	0.4	2E-51	50.69897000433601		   1.35	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	18q21.32	18	60191596	MC4R	RPS3AP49 - MC4R	400652	4160		       41.19	      179.74	rs8089364-C	rs8089364	0	8089364	Intergenic	1	0.27	4E-21	20.39794000867204		   1.24	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	2p25.3	2	624678	TMEM18	FAM150B - TMEM18	285016	129787		      335.81	       43.30	rs2903492-A	rs2903492	0	2903492	Intergenic	1	0.83	6E-15	14.22184874961635		   1.26	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	1p31.1	1	72299433	NEGR1	GDI2P2 - RPL31P12	100420259	100270887		       24.28	        2.01	rs2568958-A	rs2568958	0	2568958	Intergenic	1	0.6	2E-14	13.69897000433602		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	4p12	4	45180510	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      235.51	      142.74	rs10938397-G	rs10938397	0	10938397	Intergenic	1	0.43	2E-13	12.69897000433602		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	1q25.2	1	177883445	SEC16B	BRINP2 - SEC16B	57795	89866		      601.02	       45.66	rs633715-C	rs633715	0	633715	Intergenic	1	0.19	5E-12	11.30102999566398		   1.21	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	6p12.3	6	50835337	TFAP2B	TFAP2B			7021			rs987237-G	rs987237	0	987237	intron	0	0.18	2E-11	10.69897000433602		   1.20	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	11p14.1	11	27706992	BDNF	BDNF			627			rs2030323-C	rs2030323	0	2030323	intron	0	0.79	6E-10	9.221848749616356		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	12q13.12	12	49853685	LOC144233	BCDIN3D - RPL35AP28	144233	100271637		       10.56	        9.42	rs7138803-A	rs7138803	0	7138803	Intergenic	1	0.38	2E-9	8.698970004336019		   1.13	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry individuals with high body mass index, 8,106 European ancestry individuals with low body mass index	4,900 European ancestry individuals with high body mass index, 4,891 European ancestry individuals with low body mass index	3q27.2	3	186106215	ETV5	ETV5			2119			rs1516725-C	rs1516725	0	1516725	intron	0	0.86	4E-8	7.397940008672037		   1.21	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q21.2	17	40442920	IGFBP4	IGFBP4			3487			rs584438-C	rs584438	0	584438	nearGene-5	0	0.62	5E-12	11.30102999566398		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p36.22	1	9257545	H6PD	H6PD			9563			rs6662509-T	rs6662509	0	6662509	intron	0	0.15	3E-10	9.522878745280336		   1.23	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q25.32	3	158391590	RSRC1,SHOX2	RSRC1			51319			rs2362965-T	rs2362965	0	2362965	intron	0	0.5	2E-9	8.698970004336019		   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	8p21.2	8	26348561	PPP2R2A	PPP2R2A			5520			rs1594829-C	rs1594829	0	1594829	intron	0	0.77	4E-8	7.397940008672037		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q23	3	141414608	ZBTB38	ZBTB38			253461			rs1991431-A	rs1991431	0	1991431	intron	0	0.44	4E-47	46.39794000867204		   1.33	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.22	20	35436182	GDF5	GDF5			8200			rs224333-A	rs224333	0	224333	intron	0	0.36	8E-37	36.09691001300805		   1.31	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12q14.3	12	65958046	HMGA2	HMGA2			8091			rs1351394-T	rs1351394	0	1351394	intron	0	0.49	7E-32	31.15490195998574		   1.26	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7q21.2	7	92618762	CDK6	CDK6			1021			rs42235-T	rs42235	0	42235	intron	0	0.3	1E-28	28		   1.28	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p22.2	6	26200449	HIST1H2BF	HIST1H2AD;HIST1H2BF;HIST1H3D			3013;8343;8351			rs806794-A	rs806794	0	806794	nearGene-5;nearGene-3;nearGene-5	0	0.7	1E-25	25		   1.26	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	13q14.3	13	50532652	DLEU7	RPL34P26 - DLEU7	100130718	220107		      170.89	      179.97	rs3118906-G	rs3118906	0	3118906	Intergenic	1	0.72	2E-24	23.69897000433602		   1.26	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q21.2	1	149934520	MTMR11	MTMR11			10903			rs11205303-C	rs11205303	0	11205303	missense	0	0.38	4E-23	22.39794000867203		   1.25	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7p22.3	7	2720161	AMZ1	AMZ1 - GNA12	155185	2768		        4.73	        7.94	rs798554-C	rs798554	0	798554	Intergenic	1	0.68	4E-23	22.39794000867203		   1.24	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4p15.31	4	17950585	LCORL	LCORL			254251			rs6845078-C	rs6845078	0	6845078	intron	0	0.85	3E-22	21.52287874528033		   1.38	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4q31.21	4	144647200	HHIP	HHIP;HHIP-AS1			64399;646576			rs7689420-C	rs7689420	0	7689420	intron;nearGene-5	0	0.84	4E-21	20.39794000867204		   1.33	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q24.1	6	142334664	GPR126	GPR126			57211			rs7741741-T	rs7741741	0	7741741	intron	0	0.72	1E-20	20		   1.24	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q25.2	15	83911404	ADAMTSL3	ADAMTSL3			57188			rs11259933-A	rs11259933	0	11259933	intron	0	0.51	1E-19	19		   1.19	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q23.2	17	61419288	C17orf82	C17orf82 - TBX4	388407	9496		        6.01	       32.49	rs2079795-T	rs2079795	0	2079795	Intergenic	1	0.32	1E-18	18		   1.20	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4q21.21	4	81263080	PRKG2	PRKG2 - RASGEF1B	5593	153020		       47.96	      163.31	rs1878528-G	rs1878528	0	1878528	Intergenic	1	0.33	4E-18	17.39794000867204		   1.20	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20p12.3	20	6641038	BMP2	CASC20 - BMP2	101929244	650		      112.58	      127.06	rs2145270-C	rs2145270	0	2145270	Intergenic	1	0.37	5E-18	17.30102999566398		   1.20	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p24.3	6	7695740	BMP6	RPL29P1 - BMP6	134756	654		       74.86	       31.04	rs1885486-A	rs1885486	0	1885486	Intergenic	1	0.48	5E-17	16.30102999566398		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q22.32	6	126530014	C6orf173	MIR588 - VIMP1	693173	100130535		       45.30	       72.34	rs1490384-T	rs1490384	0	1490384	Intergenic	1	0.49	1E-16	16		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5p13.3	5	32818967	C5orf23	NPR3 - RPS8P8	4883	728553		       27.24	      343.19	rs9292468-T	rs9292468	0	9292468	Intergenic	1	0.4	2E-16	15.69897000433602		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p12	1	118321993	SPAG17	RNA5SP56 - PSMC1P12	100873294	644094		       57.50	      292.12	rs7534091-A	rs7534091	0	7534091	Intergenic	1	0.74	2E-16	15.69897000433602		   1.22	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	9q21.13	9	75927370	PCSK5	PCSK5			5125			rs11144688-G	rs11144688	0	11144688	intron	0	0.89	4E-16	15.39794000867204		   1.48	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q26.31	3	172208583	FNDC3B	FNDC3B			64778			rs4535251-T	rs4535251	0	4535251	intron	0	0.5	4E-16	15.39794000867204		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p16.1	2	55869757	EFEMP1	EFEMP1			2202			rs3791679-A	rs3791679	0	3791679	intron	0	0.77	8E-16	15.09691001300805		   1.22	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.22	20	35201339	PROCR	PROCR			10544			rs8114671-C	rs8114671	0	8114671	intron	0	0.56	1E-15	15		   1.17	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q26.1	15	88852395	ACAN	ACAN			176			rs2280470-A	rs2280470	0	2280470	intron	0	0.33	1E-15	15		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	18q11.2	18	23141009	CABLES1	CABLES1			91768			rs11082304-T	rs11082304	0	11082304	intron	0	0.5	5E-15	14.30102999566398		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.31	6	34227089	HMGA1	TRNAI25			100189401			rs1759645-C	rs1759645	0	1759645		0	0.16	5E-15	14.30102999566398		   1.29	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p36.13	1	16980180	MFAP2	MFAP2			4237			rs2284746-G	rs2284746	0	2284746	intron	0	0.52	5E-15	14.30102999566398		   1.17	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12q15	12	69433878	FRS2	RPS26P45 - FRS2	100271570	10818		       10.88	       36.47	rs10748128-T	rs10748128	0	10748128	Intergenic	1	0.35	7E-15	14.15490195998574		   1.19	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.22	20	33716847	PXMP4	PXMP4			11264			rs1074683-C	rs1074683	0	1074683	intron	0	0.76	1E-14	14		   1.21	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q23.3	17	63901188	CSH1	CSH1 - CSHL1	1442	1444		        4.53	        8.42	rs2941551-G	rs2941551	0	2941551	Intergenic	1	0.27	3E-14	13.52287874528034		   1.19	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7p15.1	7	28149464	JAZF1	JAZF1			221895			rs1029534-T	rs1029534	0	1029534	intron	0	0.31	8E-14	13.09691001300805		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q11.2	17	30837005	ATAD5	ATAD5			79915			rs3764419-C	rs3764419	0	3764419	intron	0	0.61	9E-14	13.04575749056067		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p23.3	2	24813989	CENPO,ADCY3,POMC	CENPO			79172			rs11895026-A	rs11895026	0	11895026	intron	0	0.24	1E-13	13		   1.19	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q25.3	1	184037985	GLT25D2	COLGALT2			23127			rs3814333-T	rs3814333	0	3814333	nearGene-5	0	0.33	2E-13	12.69897000433602		   1.17	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3p13	3	72343990	RYBP	LINC00870 - RYBP	201617	23429		      169.65	       30.60	rs9832740-G	rs9832740	0	9832740	Intergenic	1	0.49	5E-13	12.30102999566398		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q23.1	6	130024690	L3MBTL3	L3MBTL3			84456			rs1415701-G	rs1415701	0	1415701	intron	0	0.73	5E-13	12.30102999566398		   1.19	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	14q23.1	14	60490561	C14orf39	C14orf39 - SALL4P7	317761	390483		        4.52	        3.30	rs2093210-C	rs2093210	0	2093210	Intergenic	1	0.42	8E-13	12.09691001300806		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.31	6	34613859	C6orf106	C6orf106			64771			rs2744971-G	rs2744971	0	2744971	intron	0	0.15	8E-13	12.09691001300806		   1.26	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q26.31	3	172447937	GHSR	GHSR			2693			rs572169-T	rs572169	0	572169	cds-synon	0	0.31	1E-12	12		   1.17	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	19p13.3	19	2176404	DOT1L	DOT1L			84444			rs11880992-A	rs11880992	0	11880992	intron	0	0.39	2E-12	11.69897000433602		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3p21.1	3	53091569	RFT1	RFT1			91869			rs2564921-T	rs2564921	0	2564921	intron	0	0.43	2E-12	11.69897000433602		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	9q22.32	9	96399230	ZNF367	ZNF367			195828			rs2025151-G	rs2025151	0	2025151	intron	0	0.18	2E-12	11.69897000433602		   1.22	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	6	31297713	HLA-C, HLA-B	TRNAI25			100189401			rs2247056-T	rs2247056	0	2247056		0	0.27	4E-12	11.39794000867204		   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5q31.1	5	132350453	FLJ44796	LOC553103			553103			rs10058074-A	rs10058074	0	10058074	intron	0	0.45	4E-12	11.39794000867204		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q16.3	6	104919741	LIN28B	HACE1 - LINC00577	57531	100113403		       59.82	       16.55	rs9391253-T	rs9391253	0	9391253	Intergenic	1	0.32	5E-12	11.30102999566398		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.23	20	36124388	EPB41L1	EPB41L1			2036			rs6141600-C	rs6141600	0	6141600	intron	0	0.28	6E-12	11.22184874961635		   1.21	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12p11.22	12	28416781	CCDC91	CCDC91			55297			rs10843164-T	rs10843164	0	10843164	intron	0	0.68	6E-12	11.22184874961635		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p23.3	2	25150429	POMC	EFR3B			22979			rs13428823-G	rs13428823	0	13428823	intron	0	0.37	6E-12	11.22184874961635		   1.17	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q24.3	1	172250855	DNM3	DNM3			26052			rs12075079-G	rs12075079	0	12075079	intron	0	0.21	7E-12	11.15490195998574		   1.20	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	11p11.2	11	48069751	PTPRJ	PTPRJ			5795			rs10838798-T	rs10838798	0	10838798	intron	0	0.31	7E-12	11.15490195998574		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.31	6	35037307	ANKS1A	ANKS1A			23294			rs13210323-A	rs13210323	0	13210323	intron	0	0.73	8E-12	11.09691001300806		   1.17	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	14q12	14	24361644	NFATC4	RIPK3 - NFATC4	11035	4776		       21.61	        5.27	rs1950500-T	rs1950500	0	1950500	Intergenic	1	0.3	1E-11	11		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12p13.2	12	11702839	ETV6	ETV6			2120			rs2856321-G	rs2856321	0	2856321	intron	0	0.37	3E-11	10.52287874528034		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.1	6	45276678	SUPT3H	SUPT3H			8464			rs10948222-C	rs10948222	0	10948222	intron	0	0.6	5E-11	10.30102999566398		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12q22	12	93586312	SOCS2	SOCS2			8835			rs10492321-A	rs10492321	0	10492321	nearGene-3	0	0.21	7E-11	10.15490195998574		   1.26	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q14.1	6	81090645	FAM46A	RPL17P25 - FAM46A	442232	55603		      716.04	      655.09	rs310405-A	rs310405	0	310405	Intergenic	1	0.52	1E-10	10		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5p13.3	5	32689612	NPR3	SUB1 - NPR3	10923	4883		       85.53	       20.57	rs6450922-C	rs6450922	0	6450922	Intergenic	1	0.75	1E-10	10		   1.20	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	9q34.11	9	130588697	FUBP3	FUBP3			8939			rs7466269-A	rs7466269	0	7466269	intron	0	0.64	2E-10	9.698970004336017		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p22.3	2	33135271	LTBP1	LTBP1			4052			rs1545552-G	rs1545552	0	1545552	intron	0	0.72	2E-10	9.698970004336017		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	13q13.1	13	32572915	APRIN	N4BP2L2-IT2 - PDS5B	116828	23047		       63.52	       13.51	rs718444-T	rs718444	0	718444	Intergenic	1	0.37	2E-10	9.698970004336017		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6p21.33	6	31605179	AIF1	TRNAI25			100189401			rs2844479-A	rs2844479	0	2844479		0	0.66	3E-10	9.522878745280336		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5q35.1	5	171754233	FBXW11	FGF18 - SMIM23	8817	644994		      296.61	       31.58	rs153750-G	rs153750	0	153750	Intergenic	1	0.62	3E-10	9.522878745280336		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q25.1	6	152037044	ESR1	ESR1			2099			rs2982712-C	rs2982712	0	2982712	intron	0	0.47	4E-10	9.397940008672037		   1.17	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7p15.3	7	23443066	IGF2BP3	IGF2BP3			10643			rs6957923-G	rs6957923	0	6957923	intron	0	0.63	5E-10	9.301029995663981		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q26.3	15	100218180	ADAMTS17	ADAMTS17			170691			rs4965593-C	rs4965593	0	4965593	intron	0	0.32	7E-10	9.154901959985741		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	5q31.1	5	135021015	PITX1	CATSPER3 - PITX1	347732	5307		        9.31	        6.72	rs526896-T	rs526896	0	526896	Intergenic	1	0.72	9E-10	9.045757490560675		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	13q14.2	13	49989311	TRIM13	DLEU2			8847			rs9596219-T	rs9596219	0	9596219	intron	0	0.25	1E-9	8.999999999999998		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	11p11.2	11	47419962	PSMC3	PSMC3			5702			rs10838708-G	rs10838708	0	10838708	intron	0	0.53	2E-9	8.698970004336019		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	10q22.3	10	79171724	ZMIZ1	ZMIZ1			57178			rs780151-G	rs780151	0	780151	intron	0	0.57	2E-9	8.698970004336019		   1.13	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	8q12.1	8	56296687	RDHE2	CHCHD7 - SDR16C5	79145	195814		       78.07	        3.32	rs4075154-A	rs4075154	0	4075154	Intergenic	1	0.87	3E-9	8.522878745280337		   1.29	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q14.1	6	80136272	BCKDHB	BCKDHB			594			rs2322633-T	rs2322633	0	2322633	intron	0	0.5	3E-9	8.522878745280337		   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p34.2	1	41223266	SCMH1	SCMH1			22955			rs11209718-T	rs11209718	0	11209718	intron	0	0.44	3E-9	8.522878745280337		   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	7q36.1	7	150815084	TMEM176A	TMEM176A - AOC1	55365	26		        9.96	        9.54	rs10231759-C	rs10231759	0	10231759	Intergenic	1	0.28	4E-9	8.397940008672036		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p21	2	44253811	PPM1B	PPM1B - RPL12P19	5495	100129982		       19.21	       16.72	rs4953076-G	rs4953076	0	4953076	Intergenic	1	0.25	4E-9	8.397940008672036		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	18q21.1	18	49433130	DYM	DYM			54808			rs9967417-G	rs9967417	0	9967417	intron	0	0.42	5E-9	8.301029995663981		   1.13	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q24.1	15	73934424	LOXL1	LOXL1			4016			rs4337252-C	rs4337252	0	4337252	intron	0	0.5	7E-9	8.154901959985743		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	6q22.1	6	117550673	DCBLD1	DCBLD1			285761			rs9285425-G	rs9285425	0	9285425	intron	0	0.5	2E-8	7.698970004336018		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2q37.1	2	231513520	C2orf52	LINC00471			151477			rs6750795-T	rs6750795	0	6750795	intron	0	0.44	2E-8	7.698970004336018		   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4q24	4	105213159	KIAA1546	TET2			54790			rs6855629-G	rs6855629	0	6855629	intron	0	0.63	2E-8	7.698970004336018		   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p22.2	2	37733470	CDC42EP3	CDC42EP3 - LINC00211	10602	101929559		       60.94	       92.78	rs17511102-T	rs17511102	0	17511102	Intergenic	1	0.09	2E-8	7.698970004336018		   1.40	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q41	1	218821931	LYPLAL1	TGFB2 - LYPLAL1	7042	127018		      377.31	      351.92	rs7552186-C	rs7552186	0	7552186	Intergenic	1	0.62	3E-8	7.522878745280337		   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2q37.1	2	232123872	DIS3L2	DIS3L2			129563			rs3103267-C	rs3103267	0	3103267	intron	0	0.72	3E-8	7.522878745280337		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	13q32.1	13	96365294	HS6ST3	HS6ST3			266722			rs7989336-A	rs7989336	0	7989336	intron	0	0.47	1E-8	8	(Obesity II)	   1.10	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1p31.1	1	77582646	ZZZ3	ZZZ3			26009			rs17381664-C	rs17381664	0	17381664	intron	0	0.39	3E-8	7.522878745280337	(Obesity II)	   1.09	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1p13.3	1	109604699	GNAT2	GNAT2			2780			rs17024258-T	rs17024258	0	17024258	intron	0	0.04	9E-12	11.04575749056067	(Obesity I)	   1.25	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	8q21.11	8	75703428	HNF4G	HNF4G - LINC01111	3174	101926978		      136.59	      703.23	rs4735692-A	rs4735692	0	4735692	Intergenic	1	0.58	2E-9	8.698970004336019	(Obesity I)	   1.06	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	20q13.2	20	52476457	MRPS33P4	ERP29P1 - MRPS33P4	100420612	359777		      365.33	       34.84	rs13041126-T	rs13041126	0	13041126	Intergenic	1	0.72	2E-8	7.698970004336018	(Obesity I)	   1.06	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16p13.3	16	3963466	ADCY9	ADCY9			115			rs2531995-T	rs2531995	0	2531995	UTR-3	0	0.61	4E-8	7.397940008672037	(Obesity I)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16q12.2	16	53779538	FTO	FTO			79068			rs8043757-T	rs8043757	0	8043757	intron	0	0.4	5E-110	109.301029995664	(Obesity class I)	   1.23	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p25.3	2	624034	TMEM18	FAM150B - TMEM18	285016	129787		      335.17	       43.94	rs6711012-C	rs6711012	0	6711012	Intergenic	1	0.82	3E-40	39.52287874528034	(Obesity class I)	   1.18	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	18q21.32	18	60183189	MC4R	RPS3AP49 - MC4R	400652	4160		       32.78	      188.14	rs538656-T	rs538656	0	538656	Intergenic	1	0.24	2E-36	35.69897000433601	(Obesity class I)	   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	4p12	4	45180510	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      235.51	      142.74	rs10938397-G	rs10938397	0	10938397	Intergenic	1	0.43	3E-34	33.52287874528034	(Obesity class I)	   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1q25.2	1	177883445	SEC16B	BRINP2 - SEC16B	57795	89866		      601.02	       45.66	rs633715-C	rs633715	0	633715	Intergenic	1	0.19	9E-23	22.04575749056067	(Obesity class I)	   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	11p14.1	11	27706992	BDNF	BDNF			627			rs2030323-C	rs2030323	0	2030323	intron	0	0.79	3E-22	21.52287874528033	(Obesity class I)	   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	6p12.3	6	50830813	TFAP2B	TFAP2B			7021			rs2206277-T	rs2206277	0	2206277	intron	0	0.18	5E-22	21.30102999566398	(Obesity class I)	   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	12q13.12	12	49853685	LOC144233	BCDIN3D - RPL35AP28	144233	100271637		       10.56	        9.42	rs7138803-A	rs7138803	0	7138803	Intergenic	1	0.38	1E-20	20	(Obesity class I)	   1.09	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p23.3	2	24927427	ADCY3,POMC	ADCY3 - DNAJC27	109	51277		        7.69	       16.21	rs10182181-G	rs10182181	0	10182181	Intergenic	1	0.46	1E-17	17	(Obesity class I)	   1.08	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	14q31.1	14	79433111	NRXN3	NRXN3			9369			rs7141420-T	rs7141420	0	7141420	intron	0	0.52	1E-17	17	(Obesity class I)	   1.08	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1p31.1	1	72371556	NEGR1	RPL31P12 - KRT8P21	100270887	126811		       69.69	      733.22	rs7531118-C	rs7531118	0	7531118	Intergenic	1	0.56	2E-17	16.69897000433602	(Obesity class I)	   1.08	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	19q13.32	19	45678134	GIPR	GIPR			2696			rs1800437-G	rs1800437	0	1800437	missense	0	0.78	3E-14	13.52287874528034	(Obesity class I)	   1.10	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	3q27.2	3	186116710	ETV5	ETV5 - DGKG	2119	1608		        7.60	       30.49	rs9816226-T	rs9816226	0	9816226	Intergenic	1	0.82	2E-13	12.69897000433602	(Obesity class I)	   1.10	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16p11.2	16	28871920	SH2B1	SH2B1			25970			rs7498665-G	rs7498665	0	7498665	missense	0	0.4	3E-13	12.52287874528034	(Obesity class I)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	15q23	15	67750719	MAP2K5	MAP2K5			5607			rs8028313-C	rs8028313	0	8028313	intron	0	0.78	6E-13	12.22184874961636	(Obesity class I)	   1.08	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	5q13.3	5	75707853	C5orf37	POC5			134359			rs2307111-T	rs2307111	0	2307111	missense	0	0.6	3E-12	11.52287874528034	(Obesity class I)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	11p15.4	11	8640969	RPL27A	TRIM66			9866			rs11042023-C	rs11042023	0	11042023	missense	0	0.65	1E-11	11	(Obesity class I)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p16.1	2	59075742	FANCL	LINC01122 - RNA5SP94	400955	100873327		       11.98	      619.02	rs887912-T	rs887912	0	887912	Intergenic	1	0.28	1E-10	10	(Obesity class I)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16p12.3	16	19924067	GPRC5B	GPRC5B - GPR139	51704	124274		       38.02	      107.59	rs12446632-G	rs12446632	0	12446632	Intergenic	1	0.86	2E-10	9.698970004336017	(Obesity class I)	   1.09	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1p31.1	1	74525718	TNNI3K	TNNI3K;FPGT-TNNI3K			51086;100526835			rs1514177-C	rs1514177	0	1514177	intron;intron	0	0.43	5E-9	8.301029995663981	(Obesity class I)	   1.06	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	9p21.1	9	28414341	LINGO2	LINGO2			158038			rs10968576-G	rs10968576	0	10968576	intron	0	0.32	3E-8	7.522878745280337	(Obesity class I)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16q12.2	16	53788739	FTO	FTO			79068			rs7185735-G	rs7185735	0	7185735	intron	0	0.4	1E-79	79	(Obesity class II)	   1.33	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p25.3	2	646364	TMEM18	FAM150B - TMEM18	285016	129787		      357.50	       21.61	rs10189761-A	rs10189761	0	10189761	Intergenic	1	0.82	6E-24	23.22184874961635	(Obesity class II)	   1.24	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	18q21.32	18	60185715	MC4R	RPS3AP49 - MC4R	400652	4160		       35.31	      185.62	rs11152213-C	rs11152213	0	11152213	Intergenic	1	0.24	3E-22	21.52287874528033	(Obesity class II)	   1.19	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	6p12.3	6	50877777	TFAP2B	TRNAI25			100189401			rs2207139-G	rs2207139	0	2207139		0	0.18	3E-19	18.52287874528033	(Obesity class II)	   1.20	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1q25.2	1	177883445	SEC16B	BRINP2 - SEC16B	57795	89866		      601.02	       45.66	rs633715-C	rs633715	0	633715	Intergenic	1	0.19	4E-19	18.39794000867203	(Obesity class II)	   1.19	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	4p12	4	45173674	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      228.68	      149.58	rs13130484-T	rs13130484	0	13130484	Intergenic	1	0.43	3E-18	17.52287874528034	(Obesity class II)	   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	12q13.12	12	49853685	LOC144233	BCDIN3D - RPL35AP28	144233	100271637		       10.56	        9.42	rs7138803-A	rs7138803	0	7138803	Intergenic	1	0.38	1E-16	16	(Obesity class II)	   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1p31.1	1	72285502	NEGR1	GDI2P2 - RPL31P12	100420259	100270887		       10.35	       15.94	rs3101336-C	rs3101336	0	3101336	Intergenic	1	0.61	1E-13	13	(Obesity class II)	   1.12	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	19q13.32	19	45679046	GIPR	GIPR			2696			rs10423928-T	rs10423928	0	10423928	intron	0	0.77	4E-13	12.39794000867204	(Obesity class II)	   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	11p14.1	11	27706992	BDNF	BDNF			627			rs2030323-C	rs2030323	0	2030323	intron	0	0.79	6E-11	10.22184874961635	(Obesity class II)	   1.13	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	9p21.1	9	28425517	LINGO2	LINGO2			158038			rs1412239-G	rs1412239	0	1412239	intron	0	0.32	2E-10	9.698970004336017	(Obesity class II)	   1.11	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	13q14.3	13	53533217	OLFM4	ZNF646P1 - LINC00558	100419854	100861552		      123.34	      282.20	rs9568867-A	rs9568867	0	9568867	Intergenic	1	0.13	2E-9	8.698970004336019	(Obesity class II)	   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	3q27.2	3	186106215	ETV5	ETV5			2119			rs1516725-C	rs1516725	0	1516725	intron	0	0.86	3E-9	8.522878745280337	(Obesity class II)	   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	5q13.3	5	75719417	C5orf37	POC5			134359			rs2112347-T	rs2112347	0	2112347	nearGene-5	0	0.63	4E-9	8.397940008672036	(Obesity class II)	   1.09	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16p12.3	16	19933041	GPRC5B	GPRC5B - GPR139	51704	124274		       47.00	       98.62	rs11639988-A	rs11639988	0	11639988	Intergenic	1	0.86	4E-9	8.397940008672036	(Obesity class II)	   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p16.1	2	59075742	FANCL	LINC01122 - RNA5SP94	400955	100873327		       11.98	      619.02	rs887912-T	rs887912	0	887912	Intergenic	1	0.28	6E-9	8.221848749616356	(Obesity class II)	   1.10	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16p11.2	16	28910488	RABEP2,SH2B1	RABEP2			79874			rs7184597-T	rs7184597	0	7184597	intron	0	0.33	7E-9	8.154901959985743	(Obesity class II)	   1.10	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16q12.2	16	53767042	FTO	FTO			79068			rs1421085-C	rs1421085	0	1421085	intron	0	0.41	6E-39	38.22184874961635	(Obesity class III)	   1.45	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	8q21.11	8	75703428	HNF4G	HNF4G - LINC01111	3174	101926978		      136.59	      703.23	rs4735692-A	rs4735692	0	4735692	Intergenic	1	0.58	4E-10	9.397940008672037	(Overweight)	   1.04	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	17q25.3	17	80617311	RPTOR	RPTOR			57521			rs7503807-A	rs7503807	0	7503807	intron	0	0.57	2E-8	7.698970004336018	(Overweight)	   1.04	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16q12.2	16	53769662	FTO	FTO			79068			rs1558902-A	rs1558902	0	1558902	intron	0	0.41	2E-81	80.698970004336	(Overweight)	   1.14	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p25.3	2	624034	TMEM18	FAM150B - TMEM18	285016	129787		      335.17	       43.94	rs6711012-C	rs6711012	0	6711012	Intergenic	1	0.82	6E-35	34.22184874961635	(Overweight)	   1.11	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	4p12	4	45173674	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      228.68	      149.58	rs13130484-T	rs13130484	0	13130484	Intergenic	1	0.43	4E-28	27.39794000867203	(Overweight)	   1.08	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	18q21.32	18	60184530	MC4R	RPS3AP49 - MC4R	400652	4160		       34.12	      186.80	rs10871777-G	rs10871777	0	10871777	Intergenic	1	0.24	2E-27	26.69897000433602	(Overweight)	   1.10	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1q25.2	1	177883445	SEC16B	BRINP2 - SEC16B	57795	89866		      601.02	       45.66	rs633715-C	rs633715	0	633715	Intergenic	1	0.2	7E-20	19.15490195998574	(Overweight)	   1.08	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	11p14.1	11	27706992	BDNF	BDNF			627			rs2030323-C	rs2030323	0	2030323	intron	0	0.79	5E-17	16.30102999566398	(Overweight)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1p31.1	1	72299433	NEGR1	GDI2P2 - RPL31P12	100420259	100270887		       24.28	        2.01	rs2568958-A	rs2568958	0	2568958	Intergenic	1	0.61	4E-16	15.39794000867204	(Overweight)	   1.06	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	6p12.3	6	50830813	TFAP2B	TFAP2B			7021			rs2206277-T	rs2206277	0	2206277	intron	0	0.18	7E-16	15.15490195998574	(Overweight)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	3q27.2	3	186116710	ETV5	ETV5 - DGKG	2119	1608		        7.60	       30.49	rs9816226-T	rs9816226	0	9816226	Intergenic	1	0.82	2E-14	13.69897000433602	(Overweight)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p23.3	2	24927427	ADCY3,POMC	ADCY3 - DNAJC27	109	51277		        7.69	       16.21	rs10182181-G	rs10182181	0	10182181	Intergenic	1	0.46	3E-14	13.52287874528034	(Overweight)	   1.05	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16p12.3	16	19923751	GPRC5B	GPRC5B - GPR139	51704	124274		       37.71	      107.91	rs12446554-G	rs12446554	0	12446554	Intergenic	1	0.86	4E-12	11.39794000867204	(Overweight)	   1.07	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	16p11.2	16	28871920	SH2B1	SH2B1			25970			rs7498665-G	rs7498665	0	7498665	missense	0	0.4	5E-12	11.30102999566398	(Overweight)	   1.05	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	15q23	15	67750719	MAP2K5	MAP2K5			5607			rs8028313-C	rs8028313	0	8028313	intron	0	0.79	1E-11	11	(Overweight)	   1.06	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	3p12.1	3	85835000	CADM2	CADM2			253559			rs13078807-G	rs13078807	0	13078807	intron	0	0.2	3E-11	10.52287874528034	(Overweight)	   1.06	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	12q13.12	12	49832684	LOC144233	BCDIN3D-AS1			100286844			rs10875976-A	rs10875976	0	10875976	intron	0	0.49	2E-10	9.698970004336017	(Overweight)	   1.04	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	2p16.1	2	58606358	FANCL	LINC01122			400955			rs6731302-A	rs6731302	0	6731302	intron	0	0.44	2E-9	8.698970004336019	(Overweight)	   1.04	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	14q31.1	14	79437033	NRXN3	NRXN3			9369			rs2370983-A	rs2370983	0	2370983	intron	0	0.62	3E-9	8.522878745280337	(Overweight)	   1.04	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	1p31.1	1	74527379	TNNI3K	TNNI3K;FPGT-TNNI3K			51086;100526835			rs1514174-C	rs1514174	0	1514174	intron;intron	0	0.44	1E-8	8	(Overweight)	   1.04	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry individuals with class I obesity, 9,889 European ancestry individuals with class II obesity, 2,896 European ancestry individuals with class III obesity, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry individuals with class I obesity, 5,476 European ancestry individuals with class II obesity, 1,162 European ancestry individuals with class III obesity, up to 39,294 European ancestry controls	5q13.3	5	75719417	C5orf37	POC5			134359			rs2112347-T	rs2112347	0	2112347	nearGene-5	0	0.63	1E-8	8	(Overweight)	   1.04	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry individuals with high waist-to-hip ratio, 5,481 European ancestry individuals with low waist-to-hip ratio	3,351 European ancestry individuals with high waist-to-hip ratio, 3,352 European ancestry individuals with low waist-to-hip ratio	6p25.1	6	6742916	LY86	LY86 - BTF3P7	9450	652960		       87.93	       51.74	rs1294421-G	rs1294421	0	1294421	Intergenic	1	0.62	2E-10	9.698970004336017		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry individuals with high waist-to-hip ratio, 5,481 European ancestry individuals with low waist-to-hip ratio	3,351 European ancestry individuals with high waist-to-hip ratio, 3,352 European ancestry individuals with low waist-to-hip ratio	6q22.33	6	127188012	RSPO3	RSPO3			84870			rs7745274-A	rs7745274	0	7745274	intron	0	0.55	9E-10	9.045757490560675		   1.15	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry individuals with high waist-to-hip ratio, 5,481 European ancestry individuals with low waist-to-hip ratio	3,351 European ancestry individuals with high waist-to-hip ratio, 3,352 European ancestry individuals with low waist-to-hip ratio	1q41	1	219519878	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      319.18	       88.05	rs2820464-G	rs2820464	0	2820464	Intergenic	1	0.66	7E-9	8.154901959985743		   1.16	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
09/12/2013	23563607	Berndt SI	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563607	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry individuals with high waist-to-hip ratio, 5,481 European ancestry individuals with low waist-to-hip ratio	3,351 European ancestry individuals with high waist-to-hip ratio, 3,352 European ancestry individuals with low waist-to-hip ratio	2q24.3	2	164672366	COBLL1	EIF3EP3 - COBLL1	100462836	22837		       98.35	        7.82	rs13389219-C	rs13389219	0	13389219	Intergenic	1	0.57	3E-8	7.522878745280337		   1.13	[NR] 	Illumina & Affymetrix [~2.8 millions] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	16q12.2	16	53767042	FTO	FTO			79068			rs1421085-C	rs1421085	0	1421085	intron	0	0.41	3E-28	27.52287874528033		   1.44	[1.35-1.54] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	18q21.32	18	60185354	MC4R	RPS3AP49 - MC4R	400652	4160		       34.95	      185.98	rs476828-C	rs476828	0	476828	Intergenic	1	0.24	9E-14	13.04575749056067		   1.33	[1.23-1.43] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	2p25.3	2	629244	TMEM18	FAM150B - TMEM18	285016	129787		      340.38	       38.73	rs12463617-C	rs12463617	0	12463617	Intergenic	1	0.85	2E-13	12.69897000433602		   1.42	[1.29-1.56] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p31.1	1	72372846	NEGR1	RPL31P12 - KRT8P21	100270887	126811		       70.98	      731.93	rs1993709-G	rs1993709	0	1993709	Intergenic	1	0.81	5E-13	12.30102999566398		   1.38	[1.26-1.50] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	14q23.1	14	61441393	PRKCH	PRKCH			5583			rs1957894-T	rs1957894	0	1957894	intron	0	0.06	3E-10	9.522878745280336		   1.50	[1.32-1.70] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p31.3	1	65513597	LEPR	LEPR			3953			rs11208659-C	rs11208659	0	11208659	intron	0	0.08	2E-9	8.698970004336019		   1.42	[1.27-1.59] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	11q13.1	11	66127695	PACS1	PACS1			55690			rs564343-A	rs564343	0	564343	intron	0	0.41	2E-9	8.698970004336019		   1.22	[1.15-1.31] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	12q23.1	12	97507492	RMST	RMST			196475			rs11109072-A	rs11109072	0	11109072	intron	0	0.03	4E-9	8.397940008672036		   1.67	[1.41-1.99] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p31.1	1	72285502	NEGR1	GDI2P2 - RPL31P12	100420259	100270887		       10.35	       15.94	rs3101336-C	rs3101336	0	3101336	Intergenic	1	0.60	2E-8	7.698970004336018		   1.21	[1.13-1.29] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	12p13.33	12	442384	CCDC77	CCDC77			84318			rs1048466-G	rs1048466	0	1048466	UTR-3	0	0.72	8E-8	7.096910013008055		   1.22	[1.14-1.32] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	10p12.2	10	23569282	OTUD1, KIAA1217	OTUD1 - KIAA1217	220213	56243		      126.90	      125.46	rs16923476-A	rs16923476	0	16923476	Intergenic	1	0.02	1E-7	7		   1.78	[1.44-2.20] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	2p22.1	2	40351419	SLC8A1	SLC8A1			6546			rs17025867-A	rs17025867	0	17025867	intron	0	0.02	2E-7	6.698970004336019		   1.81	[1.45-2.27] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	12p13.31	12	6356915	SCNN1A	SCNN1A			6337			rs3782724-G	rs3782724	0	3782724	intron	0	0.04	3E-7	6.522878745280337		   1.47	[1.27-171] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	6p25.1	6	5600205	FARS2	FARS2;LOC102724161			10667;102724161			rs9328321-A	rs9328321	0	9328321	intron;intron	0	0.21	5E-7	6.30102999566398		   1.22	[1.13-1.32] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	9q22.31	9	93125038	NINJ1	NINJ1			4814			rs2275848-T	rs2275848	0	2275848	missense	0	0.82	1E-6	5.999999999999999		   1.23	[1.13-1.34] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	18q21.2	18	55359126	TCF4	TCF4			6925			rs1631486-A	rs1631486	0	1631486	intron	0	0.31	4E-6	5.397940008672037		   1.18	[1.10-1.26] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	16q24.1	16	86478309	FOXF1	FENDRR			400550			rs7187365-C	rs7187365	0	7187365	intron	0	0.82	6E-6	5.221848749616356		   1.22	[1.12-1.33] 	Affymetrix [~2 million] (Imputed)	N
10/24/2013	23563609	Wheeler E	04/07/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23563609	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p21.1	1	106098321	PRMT6	SEPT2P1 - NDE1P1	100873333	100422372		      400.09	      719.33	rs12408810-C	rs12408810	0	12408810	Intergenic	1	0.87	9E-6	5.045757490560675		   1.25	[1.13-1.38] 	Affymetrix [~2 million] (Imputed)	N
09/27/2013	23562540	Cruchaga C	04/04/2013	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/23562540	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		19q13.32	19	44906745	APOE, TOMM40	APOE			348			rs769449-A	rs769449	0	769449	intron	0	NR	2E-16	15.69897000433602	(tau)	    .08	[NR] unit increase	Illumina [5,815,690] (Imputed)	N
09/27/2013	23562540	Cruchaga C	04/04/2013	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/23562540	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		19q13.32	19	44906745	APOE, TOMM40	APOE			348			rs769449-A	rs769449	0	769449	intron	0	NR	2E-18	17.69897000433602	(ptau)	    .09	[NR] unit increase	Illumina [5,815,690] (Imputed)	N
09/27/2013	23562540	Cruchaga C	04/04/2013	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/23562540	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		3q28	3	190951729	SNAR-I, GEMC1, OSTNIL1-RAP, UTS2D, CCDC50	SNAR-I - OSTN	100170222	344901		       73.68	      247.52	rs9877502-A	rs9877502	0	9877502	Intergenic	1	NR	5E-9	8.301029995663981	(tau)	    .05	[NR] unit increase	Illumina [5,815,690] (Imputed)	N
09/27/2013	23562540	Cruchaga C	04/04/2013	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/23562540	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		9p24.2	9	3929424	GLIS3	GLIS3			169792			rs514716-G	rs514716	0	514716	intron	0	NR	1E-8	8	(tau)	    .07	[NR] unit decrease	Illumina [5,815,690] (Imputed)	N
09/27/2013	23562540	Cruchaga C	04/04/2013	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/23562540	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		9p24.2	9	3929424	GLIS3	GLIS3			169792			rs514716-G	rs514716	0	514716	intron	0	NR	3E-9	8.522878745280337	(ptau)	    .07	[NR] unit decrease	Illumina [5,815,690] (Imputed)	N
09/27/2013	23562540	Cruchaga C	04/04/2013	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/23562540	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		6p21.1	6	41368363	NCR2, TREM	TRNAI25			100189401			rs6922617-A	rs6922617	0	6922617		0	NR	4E-8	7.397940008672037	(ptau)	    .09	[NR] unit decrease	Illumina [5,815,690] (Imputed)	N
09/24/2013	23593202	Ran S	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593202	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	19q12	19	28544649	LOC148145	LOC100420587;LOC101927210			100420587;101927210			rs4141232-?	rs4141232	0	4141232	intron;intron	0	NR	2E-7	6.698970004336019	(AAM-CT, EA)	NR	NR	Affymetrix [760,794]	N
09/24/2013	23593202	Ran S	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593202	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	19q12	19	28522014	LOC148145	LOC100420587;LOC101927210			100420587;101927210			rs8113142-?	rs8113142	0	8113142	intron;intron	0	NR	5E-6	5.301029995663981	(AAM-CT, Chinese)	NR	NR	Affymetrix [760,794]	N
09/24/2013	23593202	Ran S	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593202	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	11p15.5	11	2116909	IGF2	MIR675 - INS-IGF2	100033819	723961		      120.08	       12.20	rs6578985-?	rs6578985	0	6578985	Intergenic	1	NR	6E-6	5.221848749616356	(AAM-CT, EA)	NR	NR	Affymetrix [760,794]	N
09/24/2013	23593202	Ran S	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593202	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	11p15.5	11	2116909	IGF2	MIR675 - INS-IGF2	100033819	723961		      120.08	       12.20	rs6578987-?	rs6578985	0	6578985	Intergenic	1	NR	3E-6	5.522878745280337	(AAM-CT, Chinese)	NR	NR	Affymetrix [760,794]	N
09/24/2013	23593202	Ran S	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593202	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	7q31.1	7	108332853	NRCAM	NRCAM			4897			rs6975557-?	rs6975557	0	6975557	intron	0	NR	5E-8	7.30102999566398	(AAM-W, EA)	NR	NR	Affymetrix [760,794]	N
09/24/2013	23593202	Ran S	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593202	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	19q12	19	28544649	LOC148145	LOC100420587;LOC101927210			100420587;101927210			rs4141232-?	rs4141232	0	4141232	intron;intron	0	NR	9E-6	5.045757490560675	(AAM-BR, Chinese)	NR	NR	Affymetrix [760,794]	N
09/18/2013	23593239	van der Loos MJ	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593239	The molecular genetic architecture of self-employment.	Self-employment	7,734 European ancestry cases, 42,893 European ancestry controls	737 cases, 2,534 controls	10q11.22	10	48555121	ARHGAP22	ARHGAP22			58504			rs10776614-T	rs10776614	0	10776614	intron	0	0.16	7E-6	5.154901959985742		NR	NR	Illumina & Affymetrix [~2.4 millions] Imputed	N
09/18/2013	23593239	van der Loos MJ	04/04/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23593239	The molecular genetic architecture of self-employment.	Self-employment	7,734 European ancestry cases, 42,893 European ancestry controls	737 cases, 2,534 controls	7q32.3	7	132028601	PLXNA4	RPS15AP22 - PLXNA4	100271557	91584		      325.93	       94.73	rs17166082-A	rs17166082	0	17166082	Intergenic	1	0.06	9E-6	5.045757490560675		NR	NR	Illumina & Affymetrix [~2.4 millions] Imputed	N
07/12/2013	23565137	Miyashita A	04/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23565137	SORL1 is genetically associated with late-onset Alzheimer's disease in Japanese, Koreans and Caucasians.	Alzheimer's disease (late onset)	891 Japanese ancestry cases, 844 Japanese ancestry controls	1,224 East Asian ancestry cases, 2,114 East Asian ancestry controls, 11,840 European ancestry cases, 10,931 European ancestry controls	11q24.1	11	121564878	SORL1	SORL1			6653			rs11218343-?	rs11218343	0	11218343	intron	0	0.96	2E-9	8.698970004336019		   1.23	[1.15-1.33] 	Affymetrix [5,877,918] (Imputed)	N
07/12/2013	23565137	Miyashita A	04/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23565137	SORL1 is genetically associated with late-onset Alzheimer's disease in Japanese, Koreans and Caucasians.	Alzheimer's disease (late onset)	891 Japanese ancestry cases, 844 Japanese ancestry controls	1,224 East Asian ancestry cases, 2,114 East Asian ancestry controls, 11,840 European ancestry cases, 10,931 European ancestry controls	19q13.32	19	44873027	APOE, CEACAM16, BCL3, PVRL2, TOMM40, PPP1R37	PVRL2			5819			rs519113-G	rs519113	0	519113	intron	0	0.29	5E-39	38.30102999566397	(Japanese)	   2.09	[1.87-2.34] 	Affymetrix [5,877,918] (Imputed)	N
07/12/2013	23565138	Trzaskowski M	04/02/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23565138	First genome-wide association study on anxiety-related behaviours in childhood.	Anxiety	2,810 European ancestry children	4,804 European ancestry children	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~2.5 million] (imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	13q33.1	13	102027776	FGF14	FGF14			2259			rs11617740-?	rs11617740	0	11617740	intron	0	NR	7E-7	6.154901959985743	(Afro-Caribbean)	  16.69	[5.53-51.97] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	21q22.3	21	42023389	C21orf121	ZNF295-AS1			150142			rs2839440-?	rs2839440	0	2839440	intron	0	NR	1E-6	5.999999999999999	(Afro-Caribbean)	   5.31	[2.70-10.42] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	4q34.3	4	181688712	MGC45800	LINC00290 - MGC45800	728081	90768		      529.56	      450.29	rs12641856-?	rs12641856	0	12641856	Intergenic	1	NR	2E-6	5.698970004336018	(Afro-Caribbean)	  15.19	[4.98-46.35] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	20p12.3	20	5968888	MCM8	MCM8			84515			rs4815879-?	rs4815879	0	4815879	intron	0	NR	2E-6	5.698970004336018	(Afro-Caribbean)	  14.57	[4.81-44.17] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	6p21.33	6	31008442	MUC21	MUC22			100507679			rs28360974-?	rs28360974	0	28360974	intron	0	NR	3E-6	5.522878745280337	(Afro-Caribbean)	  10.13	[3.85-26.67] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	10p12.1	10	28738294	BAMBI	BAMBI - LINC00837	25805	100507605		       55.36	       51.02	rs1248993-?	rs1248993	0	1248993	Intergenic	1	NR	6E-6	5.221848749616356	(Afro-Caribbean)	   4.27	[2.28-8.01] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	7p15.2	7	25573041	NPVF	NPVF - UBA52P1	64111	7312		      344.56	      116.36	rs975369-?	rs975369	0	975369	Intergenic	1	NR	8E-6	5.096910013008055	(Afro-Caribbean)	   4.55	[2.34-8.83] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	20p13	20	4234910	ADRA1D	ADRA1D			146			rs1556832-?	rs1556832	0	1556832	intron	0	NR	9E-6	5.045757490560675	(Afro-Caribbean)	   4.33	[2.27-8.27] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	11q23.3	11	118161271	SCN2B	SCN4B - SCN2B	6330	6327		        8.36	        1.53	rs11600901-?	rs11600901	0	11600901	Intergenic	1	NR	9E-6	5.045757490560675	(Afro-Caribbean)	   9.83	[3.58-27.00] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	13q22.3	13	77305241	MYCBP2	MYCBP2			23077			rs7322722-?	rs7322722	0	7322722	intron	0	NR	1E-6	5.999999999999999	(EA)	   2.93	[1.90-4.52] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	9q31.1	9	100214259	INVS	INVS			27130			rs10989019-?	rs10989019	0	10989019	intron	0	NR	2E-6	5.698970004336018	(EA)	   3.21	[1.98-5.20] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	10q25.1	10	104124358	C10orf78	SFR1			119392			rs10883969-?	rs10883969	0	10883969	intron	0	NR	3E-6	5.522878745280337	(EA)	   2.97	[1.88-4.69] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	9q31.1	9	100046403	ERP44	ERP44			23071			rs7028939-?	rs7028939	0	7028939	intron	0	NR	3E-6	5.522878745280337	(EA)	   3.17	[1.95-5.15] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	3q25.1	3	149532802	WWTR1	WWTR1			25937			rs17787940-?	rs17787940	0	17787940	intron	0	NR	3E-6	5.522878745280337	(EA)	   3.17	[1.95-5.16] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	21q22.12	21	34835765	RUNX1	RUNX1;LOC102724584			861;102724584			rs9976946-?	rs9976946	0	9976946	intron;nearGene-5	0	NR	5E-6	5.301029995663981	(EA)	   5.50	[2.65-11.39] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	13q13.3	13	39329106	LHFP	NXT1P1 - LHFP	100652801	10186		      159.16	       13.79	rs6563695-?	rs6563695	0	6563695	Intergenic	1	NR	5E-6	5.301029995663981	(EA)	   3.65	[2.09-6.36] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	8p21.3	8	20389247	LZTS1	RNA5SP257 - RNU3P2	100873511	26844		       98.96	      225.61	rs17412740-?	rs17412740	0	17412740	Intergenic	1	NR	2E-6	5.698970004336018	(Hispanic)	   6.08	[2.88-12.81] 	Illumina [2,485,249] (Imputed)	N
09/27/2013	23551011	Zhao L	04/02/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23551011	Genome-Wide Association Study of Pre-Eclampsia Detects Novel Maternal Single Nucleotide Polymorphisms and Copy-Number Variants in Subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) Study Cohort.	Preeclampsia	21 Afro-Caribbean ancestry cases, 1,010 Afro-Caribbean ancestry controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	2q12.1	2	105261413	TGFBRAP1	TGFBRAP1			9392			rs17636747-?	rs17636747	0	17636747	intron	0	NR	4E-6	5.397940008672037	(Hispanic)	   8.35	[3.41-20.46] 	Illumina [2,485,249] (Imputed)	N
09/18/2013	23555189	Chen Z	04/01/2013	Neoplasia	http://www.ncbi.nlm.nih.gov/pubmed/23555189	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals 	NR	10q11.23	10	46046326	MSMB	MSMB			4477			rs10993994-T	rs10993994	0	10993994	nearGene-5	0	0.41	1E-9	8.999999999999998		   1.25	[1.18-1.32] unit increase	Illumina [3,076,666] Imputed	N
09/18/2013	23555189	Chen Z	04/01/2013	Neoplasia	http://www.ncbi.nlm.nih.gov/pubmed/23555189	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals 	NR	19q13.33	19	50871711	KLK2, KLK3	KLK2			3817			rs10424878-A	rs10424878	0	10424878	nearGene-5	0	0.40	1E-8	8		   1.24	[1.17-1.31] unit increase	Illumina [3,076,666] Imputed	N
09/18/2013	23555189	Chen Z	04/01/2013	Neoplasia	http://www.ncbi.nlm.nih.gov/pubmed/23555189	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals 	NR	9p21.2	9	27610659	C9orf72	CTAGE12P			392298			rs2889829-G	rs2889829	0	2889829		0	0.64	2E-7	6.698970004336019		    .82	[0.75-0.89] unit increase	Illumina [3,076,666] Imputed	N
09/18/2013	23555189	Chen Z	04/01/2013	Neoplasia	http://www.ncbi.nlm.nih.gov/pubmed/23555189	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals 	NR	8q24.23	8	137897476	FLJ45872	FLJ45872			401478			rs62531686-C	rs62531686	0	62531686	intron	0	0.3	8E-7	6.096910013008056		    .83	[0.76-0.90] unit increase	Illumina [3,076,666] Imputed	N
07/09/2013	23535734	Codd V	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535734	Identification of seven loci affecting mean telomere length and their association with disease.	Telomere length	37,684 European ancestry individuals	10,739 European ancestry individuals	3q26.2	3	169774313	TERC	MYNN			55892			rs10936599-T	rs10936599	0	10936599	cds-synon	0	0.252	3E-31	30.52287874528034		    .10	[0.081-0.113] unit decrease	Illumina & Affymetrix [2,362,330]	N
07/09/2013	23535734	Codd V	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535734	Identification of seven loci affecting mean telomere length and their association with disease.	Telomere length	37,684 European ancestry individuals	10,739 European ancestry individuals	10q24.33	10	103916707	OBFC1	OBFC1			79991			rs9420907-A	rs9420907	0	9420907	intron	0	0.865	7E-11	10.15490195998574		    .07	[0.049-0.089] unit decrease	Illumina & Affymetrix [2,362,330]	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	20	48460486	NR	LINC00494 - PREX1	284749	57580		       89.85	      163.76	rs910191-A	rs910191	0	910191	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	2q33.3	2	205198574	NR	PARD3B			117583			rs11681930-A	rs11681930	0	11681930	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	7q36.2	7	153838604	NR	DPP6			1804			rs2110267-C	rs2110267	0	2110267	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	8q13.3	8	72158500	NR	TRPA1 - RNA5SP271	8989	100873524		       82.92	      199.23	rs11994034-T	rs11994034	0	11994034	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	6q27	6	168089888	NR	FRMD1 - CTAGE13P	79981	100421638		        8.33	      197.11	rs9364220-A	rs9364220	0	9364220	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	20	48461291	NR	LINC00494 - PREX1	284749	57580		       90.65	      162.96	rs4458264-T	rs4458264	0	4458264	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	20	48461279	NR	LINC00494 - PREX1	284749	57580		       90.64	      162.97	rs4402823-T	rs4402823	0	4402823	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	20	48459954	NR	LINC00494 - PREX1	284749	57580		       89.32	      164.30	rs4810796-A	rs4810796	0	4810796	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	20	48459908	NR	LINC00494 - PREX1	284749	57580		       89.27	      164.34	rs13043694-A	rs13043694	0	13043694	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32797074	NR	DNMT3B			1789			rs6057648-A	rs6057648	0	6057648	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32789189	NR	DNMT3B			1789			rs6119285-T	rs6119285	0	6119285	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32822531	NR	MAPRE1			22919			rs6057651-A	rs6057651	0	6057651	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32832003	NR	MAPRE1			22919			rs6057652-A	rs6057652	0	6057652	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32849801	NR	MAPRE1			22919			rs7270085-A	rs7270085	0	7270085	UTR-3	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32807671	NR	DNMT3B			1789			rs6119286-A	rs6119286	0	6119286	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32857341	NR	MAPRE1 - EFCAB8	22919	388795		        6.94	       18.80	rs6057659-A	rs6057659	0	6057659	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32859052	NR	MAPRE1 - EFCAB8	22919	388795		        8.65	       17.09	rs8123073-A	rs8123073	0	8123073	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	20	32859562	NR	MAPRE1 - EFCAB8	22919	388795		        9.16	       16.58	rs17123726-A	rs17123726	0	17123726	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	2q33.3	2	205195913	NR	PARD3B			117583			rs10153620-C	rs10153620	0	10153620	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	6q27	6	168083405	NR	FRMD1			79981			rs4708431-A	rs4708431	0	4708431	nearGene-5	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	8q22.3	8	103106338	NR	MTND2P10 - LINC01181	100873238	379034		       18.31	       14.69	rs6983777-A	rs6983777	0	6983777	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	7	153838604	NR	DPP6			1804			rs2110267-C	rs2110267	0	2110267	intron	0	NR	5E-7	6.30102999566398		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	20	48460486	NR	LINC00494 - PREX1	284749	57580		       89.85	      163.76	rs910191-A	rs910191	0	910191	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	2	104051280	NR	TMEM182 - AHCYP3	130827	402093		     1207.44	      343.72	rs6758152-T	rs6758152	0	6758152	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	5	127803924	NR	LINC01183			728586			rs1515641-A	rs1515641	0	1515641	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	15q11.2	15	23817768	NR	NDN - PWRN2	4692	791115		      130.47	      347.01	rs7164923-T	rs7164923	0	7164923	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	7	153852211	NR	DPP6			1804			rs2192271-T	rs2192271	0	2192271	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	7	153855979	NR	DPP6			1804			rs6947495-A	rs6947495	0	6947495	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	7q36.2	7	153861864	NR	DPP6			1804			rs12671878-A	rs12671878	0	12671878	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	20	48461291	NR	LINC00494 - PREX1	284749	57580		       90.65	      162.96	rs4458264-T	rs4458264	0	4458264	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	20	48461279	NR	LINC00494 - PREX1	284749	57580		       90.64	      162.97	rs4402823-T	rs4402823	0	4402823	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	20	48459954	NR	LINC00494 - PREX1	284749	57580		       89.32	      164.30	rs4810796-A	rs4810796	0	4810796	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	20	48459908	NR	LINC00494 - PREX1	284749	57580		       89.27	      164.34	rs13043694-A	rs13043694	0	13043694	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	2	103956547	NR	TMEM182 - AHCYP3	130827	402093		     1112.71	      438.46	rs2119507-T	rs2119507	0	2119507	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	2	103972680	NR	TMEM182 - AHCYP3	130827	402093		     1128.84	      422.32	rs11903187-A	rs11903187	0	11903187	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	2	103970893	NR	TMEM182 - AHCYP3	130827	402093		     1127.06	      424.11	rs10193430-A	rs10193430	0	10193430	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	2	103964045	NR	TMEM182 - AHCYP3	130827	402093		     1120.21	      430.96	rs12613775-T	rs12613775	0	12613775	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	2	103962075	NR	TMEM182 - AHCYP3	130827	402093		     1118.24	      432.93	rs1036736-T	rs1036736	0	1036736	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	5	127790070	NR	LINC01183			728586			rs7722425-T	rs7722425	0	7722425	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	5	127786620	NR	LINC01183			728586			rs10463833-A	rs10463833	0	10463833	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	5	127774794	NR	LINC01183			728586			rs10463832-A	rs10463832	0	10463832	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	5	127726279	NR	LINC01183			728586			rs12523164-T	rs12523164	0	12523164	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	5	127724250	NR	LINC01183			728586			rs12513840-A	rs12513840	0	12513840	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	5q23.2	5	127718586	NR	LINC01183			728586			rs4835929-T	rs4835929	0	4835929	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q11.21	20	32832003	NR	MAPRE1			22919			rs6057652-A	rs6057652	0	6057652	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
10/01/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q11.21	20	32822531	NR	MAPRE1			22919			rs6057651-A	rs6057651	0	6057651	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	5q35.2	5	175817031	NR	CPLX2			10814			rs7448069-T	rs7448069	0	7448069	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20115652	NR	GPR139 - SALL4P3	124274	100131046		       41.87	       39.93	rs12919130-A	rs12919130	0	12919130	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	2	145287997	NR	SGCEP - RPL6P5	474174	100270844		      531.85	       49.24	rs11687420-A	rs11687420	0	11687420	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	6q27	6	168089888	NR	FRMD1 - CTAGE13P	79981	100421638		        8.33	      197.11	rs9364220-A	rs9364220	0	9364220	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20045671	NR	GPR139			124274			rs12596252-A	rs12596252	0	12596252	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20046339	NR	GPR139			124274			rs1902813-C	rs1902813	0	1902813	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20048355	NR	GPR139			124274			rs12926725-T	rs12926725	0	12926725	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	2	145286484	NR	SGCEP - RPL6P5	474174	100270844		      530.34	       50.75	rs1822881-A	rs1822881	0	1822881	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20049508	NR	GPR139			124274			rs12931939-T	rs12931939	0	12931939	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20112193	NR	GPR139 - SALL4P3	124274	100131046		       38.42	       43.39	rs6497436-T	rs6497436	0	6497436	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20110968	NR	GPR139 - SALL4P3	124274	100131046		       37.19	       44.61	rs2608200-A	rs2608200	0	2608200	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20098331	NR	GPR139 - SALL4P3	124274	100131046		       24.55	       57.25	rs11642377-A	rs11642377	0	11642377	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20089048	NR	GPR139 - SALL4P3	124274	100131046		       15.27	       66.53	rs12926729-A	rs12926729	0	12926729	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20084306	NR	GPR139 - SALL4P3	124274	100131046		       10.53	       71.28	rs11647507-A	rs11647507	0	11647507	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	2	145314285	NR	SGCEP - RPL6P5	474174	100270844		      558.14	       22.95	rs10180522-A	rs10180522	0	10180522	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20083564	NR	GPR139 - SALL4P3	124274	100131046		        9.79	       72.02	rs7185264-A	rs7185264	0	7185264	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20083224	NR	GPR139 - SALL4P3	124274	100131046		        9.45	       72.36	rs12924103-T	rs12924103	0	12924103	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20082732	NR	GPR139 - SALL4P3	124274	100131046		        8.95	       72.85	rs7201408-A	rs7201408	0	7201408	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20079323	NR	GPR139 - SALL4P3	124274	100131046		        5.55	       76.26	rs10521115-A	rs10521115	0	10521115	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	16	20078432	NR	GPR139 - SALL4P3	124274	100131046		        4.65	       77.15	rs10521114-A	rs10521114	0	10521114	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	2	145335188	NR	SGCEP - RPL6P5	474174	100270844		      579.05	        2.05	rs13407123-T	rs13407123	0	13407123	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [2,373,249] (Imputed)	N
09/27/2013	23527680	Ebejer JL	04/01/2013	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23527680	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q14.3	2	123757465	NR	TSN - CNTNAP5	7247	129684		     1989.61	      267.82	rs13006237-A	rs13006237	0	13006237	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [2,373,249] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	1q21.3	1	154861707	ADAM15, ADAR, CKS1B, DCST1, DCST2, DPM3, EFNA1, EFNA3,EFNA4, FLAD1, KCNN3, LENEP, LOC10050, LOC100505666,MIR4258, PBXIP1, PMVK, PYGO2, SHC1, SLC50A1, ZBTB7B	KCNN3			3782			rs1218582-G	rs1218582	0	1218582	intron	0	0.45	2E-8	7.698970004336018		   1.06	[1.03-1.09] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	1q32.1	1	204549714	LOC127841, LRRN2, MDM4, PIK3C2B, PLEKHA6, PPP1R15B	MDM4			4194			rs4245739-A	rs4245739	0	4245739	ncRNA	0	0.75	2E-11	10.69897000433602		   1.10	[1.05-1.14] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	2p25.1	2	9977740	C2orf48, CYS1, GRHL1, KLF11, MIR4261, RRM2, TAF1B	GRHL1			29841			rs11902236-A	rs11902236	0	11902236	intron	0	0.27	3E-8	7.522878745280337		   1.07	[1.03-1.10] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	2q37.3	2	241443449	ANO7, ATG4B, BOK, BOK-AS1, DTYMK, FARP2, HDLBP, SEP2,STK25, THAP4	FARP2			9855			rs3771570-A	rs3771570	0	3771570	intron	0	0.15	5E-9	8.301029995663981		   1.12	[1.08-1.17] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	3q13.2	3	113556777	ATP6V1A, BOC, KIAA2018, MIR4446, NAA50, SIDT1, SPICE1,WDR52, WDR52-AS, WDR52-AS1	SIDT1			54847			rs7611694-A	rs7611694	0	7611694	intron	0	0.59	4E-13	12.39794000867204		   1.10	[1.08-1.14] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	4q13.3	4	73483441	AFM, RASSF6, AFP, ALB, ANKRD17, COX18, LOC72804, LOC728040	AFM			173			rs1894292-G	rs1894292	0	1894292	intron	0	0.52	5E-13	12.30102999566398		   1.10	[1.06-1.12] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	5q35.2	5	173512423	BOD1, FAM44B, LOC285593, STC2	MIR8056 - BOD1	102465862	91272		      164.89	       94.72	rs6869841-A	rs6869841	0	6869841	Intergenic	1	0.21	5E-8	7.30102999566398		   1.07	[1.04-1.11] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6p21.32	6	32224554	AGER, AGPAT1, ATF6B, BTNL2, C2, C4A, C4B, C6orf10, CFB,CYP21A1P, CYP21A2, DOM3Z, EGFL8, FKBPL, GPSM3,HCG23, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, HLA-DRB5,HLA-DRB6, LOC10029, LOC100293534, LOC10050,LOC100507547, MIR1236, NOTCH4, PBX2, PPT2, PPT2-EGF,PPT2-EGFL8, PRRT1, RDBP, RNF5, RNF5P1, SKIV2L, STK19,TNXA, TNXB	NOTCH4			4855			rs3096702-A	rs3096702	0	3096702	nearGene-5	0	0.4	5E-9	8.301029995663981		   1.07	[1.04-1.10] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6q21	6	108963986	ARMC2, SESN1, CEP57L1, FOXO3, LACE1, LINC0022, LINC00222	ARMC2			84071			rs2273669-G	rs2273669	0	2273669	intron	0	0.15	8E-9	8.096910013008056		   1.07	[1.03-1.11] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	6q25.2	6	153119944	RGS17, FBXO5, MTRF1L	RGS17			26575			rs1933488-A	rs1933488	0	1933488	intron	0	0.59	4E-18	17.39794000867204		   1.12	[1.09-1.15] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	7p15.3	7	20954872	SP8, ABCB5, RPL23P8	RPS26P30 - ASS1P11	100271111	340274		      110.91	      265.11	rs12155172-A	rs12155172	0	12155172	Intergenic	1	0.23	5E-13	12.30102999566398		   1.11	[1.07-1.15] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	8p21.2	8	26034626	EBF2	EBF2			64641			rs11135910-A	rs11135910	0	11135910	intron	0	0.16	8E-11	10.09691001300805		   1.11	[1.07-1.16] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	10q24.32	10	102654464	ACTR1A, ARL3, AS3MT, C10orf32, C10orf32-AS3MT, C10orf95,CNNM2, CUEDC2, CYP17A1, FBXL15, LOC100505761,MIR146B, PSD, SFXN2, SUFU, TMEM180, TRIM8, WBP1L	TRIM8			81603			rs3850699-A	rs3850699	0	3850699	intron	0	0.71	5E-10	9.301029995663981		   1.10	[1.06-1.12] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	11q22.2	11	102530930	BIRC2, BIRC3, MMP10, MMP20, MMP27, MMP7, MMP8,TMEM123, YAP1	MMP7			4316			rs11568818-A	rs11568818	0	11568818	nearGene-5	0	0.56	2E-11	10.69897000433602		   1.10	[1.06-1.14] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	12q24.21	12	114247766	TBX5, LOC255480	GLULP5 - TBX5	100421694	6910		      141.84	      106.16	rs1270884-A	rs1270884	0	1270884	Intergenic	1	0.49	7E-11	10.15490195998574		   1.07	[1.04-1.10] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	14q22.1	14	52905612	DDHD1, ERO1L, FERMT2, GNPNAT1, GPR137C, PSMC6, STYX,TXNDC16	FERMT2			10979			rs8008270-G	rs8008270	0	8008270	intron	0	0.82	2E-14	13.69897000433602		   1.12	[1.08-1.16] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	14q24.1	14	68660027	ACTN1, RAD51B, ZFP36L1	RAD51B			5890			rs7141529-G	rs7141529	0	7141529	intron	0	0.5	3E-10	9.522878745280336		   1.09	[1.06-1.12] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	17p13.3	17	715725	DBIL5P, FAM57A, GEMIN4, GLOD4, NXN, RNMTL1, VPS53	VPS53			55275			rs684232-G	rs684232	0	684232	nearGene-5	0	0.36	5E-15	14.30102999566398		   1.10	[1.07-1.14] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	17q21.32	17	49267824	HOXB13, PRAC, SPOP, ZNF652, ABI3, B4GALNT2, FLJ40194, GNGT2, IGF2BP1, NGFR, PHB, PHOSPHO1	FLJ40194 - MIR6129	124871	102465137		        9.16	       20.52	rs11650494-A	rs11650494	0	11650494	Intergenic	1	0.08	2E-9	8.698970004336019		   1.15	[1.09-1.22] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	18q23	18	79013973	SALL3, ATP9B	SALL3 - ATP9B	27164	374868		       15.00	       55.42	rs7241993-G	rs7241993	0	7241993	Intergenic	1	0.7	2E-9	8.698970004336019		   1.09	[1.05-1.12] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	20q13.33	20	62440555	ADRM1, C20orf15, C20orf151, C20orf166, C20orf166-AS1,CABLES2, GATA5, GTPBP5, HRH3, LAMA5, MIR1-1,MIR133A2, MIR4758, OSBPL2, RPS21	RBBP8NL - GATA5	140893	140628		       12.98	       22.94	rs2427345-G	rs2427345	0	2427345	Intergenic	1	0.63	4E-8	7.397940008672037		   1.06	[1.03-1.1] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	20q13.33	20	63731211	ABHD16B, ARFRP1, C20orf195, DNAJC5, EEF1A2, GMEB2,LIME1, LOC100505815, MIR1914, MIR647, MIR941-1,MIR941-2, MIR941-3, MIR941-4, PPDPF, PRIC285, PRPF6,PTK6, RTEL1, RTEL1-TN, RTEL1-TNFRSF6B, SAMD10,SLC2A4RG, SRMS, STMN3, TNFRSF6B, TPD52L2, UCKL1,UCKL1-AS1, ZBTB46, ZGPAT, ZNF512B	ZGPAT			84619			rs6062509-A	rs6062509	0	6062509	intron	0	0.7	4E-16	15.39794000867204		   1.12	[1.09-1.16] 	Illumina [~2.6 million] (Imputed)	N
09/16/2013	23535732	Eeles RA	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535732	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	Xp22.2	23	9846095	GPR143, LOC100288814, SHROOM2, TBL1X, WWC3	SHROOM2			357			rs2405942-A	rs2405942	0	2405942	intron	0	0.79	2E-10	9.698970004336017		   1.14	[1.09-1.2] 	Illumina [~2.6 million] (Imputed)	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	1q32.1	1	204549714	MDM4, PIK3C2B, LRRN2	MDM4			4194			rs4245739-?	rs4245739	0	4245739	ncRNA	0	0.26	2E-12	11.69897000433602		   1.14	[1.10-1.18] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	1q32.1	1	202218048	LGR6, UBE2T, PTPN7	LGR6			59352			rs6678914-?	rs6678914	0	6678914	intron	0	0.59	1E-8	8		   1.10	[1.06-1.13] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	2p24.1	2	19121042	Intergenic	FLJ41481 - MIR4757	400945	100616307		       94.34	      227.39	rs12710696-?	rs12710696	0	12710696	Intergenic	1	0.36	5E-8	7.30102999566398		   1.10	[1.06-1.13] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	16q12.2	16	53821379	KIAA1752, FTO	FTO			79068			rs11075995-?	rs11075995	0	11075995	intron	0	0.24	4E-8	7.397940008672037		   1.11	[1.07-1.15] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	5p15.33	5	1279675	TERT	TERT			7015			rs10069690-T	rs10069690	0	10069690	intron	0	0.321	5E-12	11.30102999566398		   1.15	[1.11-1.20] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	6q14.1	6	81483392	Intergenic	RPL17P25 - FAM46A	442232	55603		     1108.79	      262.34	rs17530068-C	rs17530068	0	17530068	Intergenic	1	0.237	3E-6	5.522878745280337		   1.09	[1.05-1.13] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	6q25.1	6	151627231	ESR1	CCDC170 - ESR1	80129	2099		        6.04	       63.27	rs2046210-A	rs2046210	0	2046210	Intergenic	1	0.423	5E-16	15.30102999566398		   1.15	[1.11-1.19] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	10q21.2	10	62518923	ZNF365	ZNF365			22891			rs10995190-G	rs10995190	0	10995190	intron	0	0.846	1E-7	7		   1.12	[1.08-1.18] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	12p11.22	12	28002147	PTHLH	PTHLH - CCDC91	5744	55297		       30.16	      188.28	rs10771399-T	rs10771399	0	10771399	Intergenic	1	0.895	2E-12	11.69897000433602		   1.20	[1.15-1.27] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	16q12.1	16	52552429	TOX3	CASC16			643714			rs3803662-T	rs3803662	0	3803662	ncRNA	0	0.267	6E-13	12.22184874961636		   1.14	[1.10-1.18] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	19p13.11	19	17278895	MERIT40	BABAM1			29086			rs8170-A	rs8170	0	8170	missense	0	0.191	9E-13	12.04575749056067		   1.15	[1.11-1.20] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	1p36.22	1	10506158	PEX14	PEX14			5195			rs616488-A	rs616488	0	616488	intron	0	0.665	1E-8	8		   1.10	[1.06-1.14] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	5q33.3	5	158817075	EBF1	EBF1			1879			rs1432679-C	rs1432679	0	1432679	intron	0	0.435	7E-6	5.154901959985742		   1.08	[1.04-1.11] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	12q22	12	95633983	NTN4	USP44 - PGAM1P5	84101	100132594		       82.50	       15.27	rs17356907-A	rs17356907	0	17356907	Intergenic	1	0.702	9E-6	5.045757490560675		   1.09	[1.04-1.12] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	13q13.1	13	32398489	BRCA2, N4BP2L1	BRCA2			675			rs11571833-T	rs11571833	0	11571833	STOP-GAIN	0	0.496	6E-6	5.221848749616356		   1.52	[1.31-1.77] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	16q12.2	16	53779455	MIR1972-2, FTO	FTO			79068			rs17817449-T	rs17817449	0	17817449	intron	0	0.526	6E-7	6.221848749616355		   1.09	[1.05-1.12] 	Illumina [NR]	N
09/12/2013	23535733	Garcia-Closas M	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535733	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	22q13.1	22	40480230	MKL1	MKL1			57591			rs6001930-C	rs6001930	0	6001930	intron	0	0.107	2E-6	5.698970004336018		   1.14	[1.08-1.20] 	Illumina [NR]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (asthmatics)	1,881 European ancestry children, 109 European and other ancestry children, 701 Other ancestry children	979 European ancestry children, 921 Hispanic children, 120 Other ancestry children 	18p11.31	18	2946293	LPIN2	LPIN2;LOC727896			9663;727896			rs643507-C	rs643507	0	643507	intron;ncRNA	0	0.01	8E-9	8.096910013008056	(adult)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (asthmatics)	1,881 European ancestry children, 109 European and other ancestry children, 701 Other ancestry children	979 European ancestry children, 921 Hispanic children, 120 Other ancestry children 	13q13.1	13	33224125	STARD13, RP11-81F11.3	STARD13			90627			rs2555603-C	rs2555603	0	2555603	intron	0	0.25	3E-6	5.522878745280337	(adult)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (asthmatics)	1,881 European ancestry children, 109 European and other ancestry children, 701 Other ancestry children	979 European ancestry children, 921 Hispanic children, 120 Other ancestry children 	10p15.1	10	6530263	PRKCQ	PRKCQ			5588			rs11259403-C	rs11259403	0	11259403	intron	0	0.33	7E-6	5.154901959985742	(adult)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (asthmatics)	1,881 European ancestry children, 109 European and other ancestry children, 701 Other ancestry children	979 European ancestry children, 921 Hispanic children, 120 Other ancestry children 	9p22.1	9	19579429	SLC24A2	SLC24A2			25769			rs3780215-A	rs3780215	0	3780215	intron	0	0.20	7E-6	5.154901959985742	(adult)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (asthmatics)	1,881 European ancestry children, 109 European and other ancestry children, 701 Other ancestry children	979 European ancestry children, 921 Hispanic children, 120 Other ancestry children 	11q13.4	11	73183228	P2RY2	RPL15P16 - P2RY2	100127949	5029		      242.12	       34.44	rs11603160-T	rs11603160	0	11603160	Intergenic	1	0.18	8E-6	5.096910013008055	(adult)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (asthmatics)	1,881 European ancestry children, 109 European and other ancestry children, 701 Other ancestry children	979 European ancestry children, 921 Hispanic children, 120 Other ancestry children 	2q34	2	210630863	CPS1	CPS1			1373			rs12468557-T	rs12468557	0	12468557	intron	0	0.38	9E-6	5.045757490560675	(adult)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	9q33.3	9	123684499	DENND1A	DENND1A			57706			rs10818854-A	rs10818854	0	10818854	intron	0	0.04	2E-7	6.698970004336019	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	20q13.2	20	52940622	Intergenic	RPL36P1 - TSHZ2	140697	128553		       50.24	       31.79	rs6097169-A	rs6097169	0	6097169	Intergenic	1	0.10	5E-7	6.30102999566398	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	17q21.32	17	48672429	Intergenic	MIR196A1 - RPL9P28	406972	729146		       39.87	       18.59	rs8074700-A	rs8074700	0	8074700	Intergenic	1	0.26	1E-6	5.999999999999999	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	2p23.3	2	24880239	ADCY3	ADCY3			109			rs2033654-A	rs2033654	0	2033654	intron	0	0.42	2E-6	5.698970004336018	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	17q21.32	17	48643203	Intergenic	LOC101060400			101060400			rs2326017-T	rs2326017	0	2326017	intron	0	0.28	2E-6	5.698970004336018	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	2p23.3	2	24874775	ADCY3	ADCY3			109			rs13407913-G	rs13407913	0	13407913	intron	0	0.43	3E-6	5.522878745280337	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	2p23.3	2	25082887	EFR3B	EFR3B			22979			rs1530016-T	rs1530016	0	1530016	intron	0	0.40	3E-6	5.522878745280337	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	2p23.3	2	24935412	Intergenic	ADCY3 - DNAJC27	109	51277		       15.68	        8.22	rs713587-T	rs713587	0	713587	Intergenic	1	0.49	4E-6	5.397940008672037	(Children)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	6p12.3	6	51101004	AL139097.1	TRNAI25			100189401			rs7775861-T	rs7775861	0	7775861		0	0.38	9E-8	7.045757490560674	(Adults)	NR	NR	Illumina [536,451]	N
10/30/2013	23517042	Melen E	04/01/2013	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23517042	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index (non-asthmatics)	5,184 European ancestry children, 186 Other ancestry children, 7,861 European ancestry adults, 331 European and other ancestry adults, 192 Other ancestry adults	841 European ancestry children, 421 Hispanic children, 381 Other ancestry children	4p15.1	4	34923442	Intergenic	RPL31P31 - SEC63P2	727792	100420287		      954.88	      564.37	rs1317830-G	rs1317830	0	1317830	Intergenic	1	0.32	3E-6	5.522878745280337	(Children)	NR	NR	Illumina [536,451]	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	1p36.22	1	10506158	PEX14	PEX14			5195			rs616488-A	rs616488	0	616488	intron	0	0.67	2E-10	9.698970004336017		   1.06	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	1p13.2	1	113905767	PTPN22, BCL2L15, AP4B1, DCLRE1B, HIPK1	AP4B1;DCLRE1B			10717;64858			rs11552449-T	rs11552449	0	11552449	nearGene-5;missense	0	0.17	2E-8	7.698970004336018		   1.07	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q14.2	2	120487546	Intergenic	LINC01101 - GLI2	84931	2736		       21.20	      309.75	rs4849887-C	rs4849887	0	4849887	Intergenic	1	0.902	4E-11	10.39794000867204		   1.10	[1.06-1.14] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q31.1	2	172108243	METAP1D, DLX1, DLX2	DLX2 - ITGA6	1746	3655		        5.49	      319.34	rs2016394-G	rs2016394	0	2016394	Intergenic	1	0.52	1E-8	8		   1.05	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q35	2	217431785	DIRC3	DIRC3			729582			rs16857609-T	rs16857609	0	16857609	intron	0	0.26	1E-15	15		   1.08	[1.06-1.10] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	3p26.1	3	4700592	ITPR1, EGOT	ITPR1			3708			rs6762644-G	rs6762644	0	6762644	intron	0	0.4	2E-12	11.69897000433602		   1.07	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	3p24.1	3	30641447	TGFBR2	TGFBR2			7048			rs12493607-C	rs12493607	0	12493607	intron	0	0.35	2E-8	7.698970004336018		   1.06	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	4q24	4	105163621	TET2	TET2			54790			rs9790517-T	rs9790517	0	9790517	intron	0	0.23	4E-8	7.397940008672037		   1.05	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	4q34.1	4	174925275	ADAM29	ADAM29			11086			rs6828523-C	rs6828523	0	6828523	intron	0	0.87	4E-16	15.39794000867204		   1.11	[1.09-1.15] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q11.2	5	58888234	RAB3C	RPL5P15 - PDE4D	100270836	5144		       64.99	       80.80	rs10472076-C	rs10472076	0	10472076	Intergenic	1	0.38	3E-8	7.522878745280337		   1.05	[1.03-1.07] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q33.3	5	158817075	EBF1	EBF1			1879			rs1432679-C	rs1432679	0	1432679	intron	0	0.43	2E-14	13.69897000433602		   1.07	[1.05-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6p25.3	6	1318643	FOXQ1	FOXQ1 - FOXF2	94234	2295		        3.89	       71.19	rs11242675-T	rs11242675	0	11242675	Intergenic	1	0.61	7E-9	8.154901959985743		   1.06	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6p23	6	13722291	RANBP9	RANBP9 - MCUR1	10048	63933		       10.73	       64.26	rs204247-G	rs204247	0	204247	Intergenic	1	0.43	8E-9	8.096910013008056		   1.05	[1.03-1.07] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	7q35	7	144377836	ARHGEF5, NOBOX	ARHGEF5			7984			rs720475-G	rs720475	0	720475	intron	0	0.75	7E-11	10.15490195998574		   1.06	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8p12	8	29652100	Intergenic	RPL17P33 - LINC00589	646909	619351		       19.42	       69.16	rs9693444-A	rs9693444	0	9693444	Intergenic	1	0.32	9E-14	13.04575749056067		   1.07	[1.05-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q21.11	8	75318066	Intergenic	HIGD1AP6 - HNF4G	100874436	3174		       15.49	      221.90	rs6472903-T	rs6472903	0	6472903	Intergenic	1	0.82	2E-17	16.69897000433602		   1.10	[1.08-1.12] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q24.21	8	128182395	MIR1208, MYC	MIR1208 - LINC01263	100302281	101927774		       32.21	      222.87	rs11780156-T	rs11780156	0	11780156	Intergenic	1	0.16	3E-11	10.52287874528034		   1.07	[1.04-1.10] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	9q31.2	9	107543834	Intergenic	KLF4 - RPL36AP6	9314	641556		       54.07	      290.62	rs10759243-A	rs10759243	0	10759243	Intergenic	1	0.39	1E-8	8		   1.06	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10p12.31	10	21744013	MLLT10, DNAJC1	MLLT10			8028			rs7072776-A	rs7072776	0	7072776	nearGene-3	0	0.29	4E-14	13.39794000867204		   1.07	[1.05-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q25.2	10	113014168	TCF7L2	TCF7L2			6934			rs7904519-G	rs7904519	0	7904519	intron	0	0.46	3E-8	7.522878745280337		   1.06	[1.04-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q26.12	10	121334387	Intergenic	LINC01153 - FGFR2	101927889	2263		      148.42	      143.94	rs11199914-C	rs11199914	0	11199914	Intergenic	1	0.68	2E-8	7.698970004336018		   1.05	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11q13.1	11	65815595	DKFZp761E198, OVOL1, SNX32, CFL1, MUS81	OVOL1-AS1 - SNX32	101927828	254122		       24.73	       18.24	rs3903072-G	rs3903072	0	3903072	Intergenic	1	0.53	9E-12	11.04575749056067		   1.05	[1.04-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11q24.3	11	129591276	Intergenic	RPS27P20 - TMEM45B	100271581	120224		       53.10	      224.57	rs11820646-C	rs11820646	0	11820646	Intergenic	1	0.59	1E-9	8.999999999999998		   1.05	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12p13.1	12	14260997	Intergenic	GNAI2P1 - RPL30P11	2772	100271303		        5.41	       95.87	rs12422552-C	rs12422552	0	12422552	Intergenic	1	0.26	4E-8	7.397940008672037		   1.05	[1.03-1.07] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12q22	12	95633983	NTN4	USP44 - PGAM1P5	84101	100132594		       82.50	       15.27	rs17356907-A	rs17356907	0	17356907	Intergenic	1	0.7	2E-22	21.69897000433602		   1.10	[1.08-1.12] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	13q13.1	13	32398489	BRCA2, N4BP2L1, N4BP2L2	BRCA2			675			rs11571833-T	rs11571833	0	11571833	STOP-GAIN	0	0.0080	5E-8	7.30102999566398		   1.26	[1.14-1.39] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q13.3	14	36663564	PAX9, SLC25A21	PAX9			5083			rs2236007-G	rs2236007	0	2236007	intron	0	0.79	2E-13	12.69897000433602		   1.08	[1.05-1.1] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q24.1	14	68193711	RAD51L1	RAD51B			5890			rs2588809-T	rs2588809	0	2588809	intron	0	0.16	1E-10	10		   1.08	[1.05-1.11] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q32.11	14	91374725	CCDC88C	CCDC88C			440193			rs941764-G	rs941764	0	941764	intron	0	0.34	4E-10	9.397940008672037		   1.06	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	16q12.2	16	53779455	MIR1972-2, FTO	FTO			79068			rs17817449-T	rs17817449	0	17817449	intron	0	0.6	6E-14	13.22184874961636		   1.08	[1.05-1.1] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	16q23.2	16	80616908	CDYL2	CDYL2			124359			rs13329835-G	rs13329835	0	13329835	intron	0	0.22	2E-16	15.69897000433602		   1.08	[1.05-1.10] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	18q11.2	18	26757460	Intergenic	PCAT18 - AQP4	728606	361		       53.82	       94.58	rs527616-G	rs527616	0	527616	Intergenic	1	0.62	2E-10	9.698970004336017		   1.05	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	19p13.11	19	18460331	SSBP4, ISYNA1, ELL	ELL			8178			rs4808801-A	rs4808801	0	4808801	intron	0	0.65	5E-15	14.30102999566398		   1.08	[1.05-1.1] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	19q13.31	19	43782361	C19orf61, KCNN4, LYPD5, ZNF283	KCNN4			3783			rs3760982-A	rs3760982	0	3760982	nearGene-5	0	0.46	2E-10	9.698970004336017		   1.06	[1.04-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	22q12.2	22	29225488	EMID1, RHBDD3, EWSR1, CHEK2	EMID1			129080			rs132390-C	rs132390	0	132390	intron	0	0.036	3E-9	8.522878745280337		   1.12	[1.07-1.18] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	22q13.1	22	40480230	MKL1	MKL1			57591			rs6001930-C	rs6001930	0	6001930	intron	0	0.11	9E-19	18.04575749056067		   1.12	[1.09-1.16] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	1p11.2	1	121538815	Intergenic	EMBP1			647121			rs11249433-G	rs11249433	0	11249433	intron	0	0.4	2E-26	25.69897000433602		   1.09	[1.07-1.11] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q35	2	217041109	Intergenic	TNP1 - DIRC3	7141	729582		      181.05	      242.91	rs13387042-A	rs13387042	0	13387042	Intergenic	1	0.51	2E-57	56.69897000433601		   1.14	[1.11-1.16] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	3p24.1	3	27374522	SLC4A7	SLC4A7			9497			rs4973768-T	rs4973768	0	4973768	UTR-3	0	0.47	2E-30	29.69897000433602		   1.10	[1.08-1.12] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5p15.33	5	1279675	TERT	TERT			7015			rs10069690-T	rs10069690	0	10069690	intron	0	0.26	7E-9	8.154901959985743		   1.06	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5p12	5	44706396	Intergenic	FGF10-AS1 - MRPS30	101927075	10884		      292.41	      102.53	rs10941679-G	rs10941679	0	10941679	Intergenic	1	0.25	2E-37	36.69897000433602		   1.13	[1.10-1.15] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q11.2	5	56736057	MAP3K1	RPL26P19 - MAP3K1	441073	4214		      230.94	       79.02	rs889312-C	rs889312	0	889312	Intergenic	1	0.28	3E-36	35.52287874528034		   1.12	[1.10-1.15] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6q14.1	6	81483392	Intergenic	RPL17P25 - FAM46A	442232	55603		     1108.79	      262.34	rs17530068-G	rs17530068	0	17530068	Intergenic	1	0.22	8E-9	8.096910013008056		   1.05	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	6q25.1	6	151592978	ESR1	CCDC170			80129			rs3757318-A	rs3757318	0	3757318	intron	0	0.07	2E-21	20.69897000433602		   1.16	[1.12-1.21] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q24.21	8	127343372	Intergenic	LOC101930033			101930033			rs13281615-G	rs13281615	0	13281615	intron	0	0.41	1E-27	27		   1.09	[1.07-1.12] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	9p21.3	9	22062135	CDKN2A, CDKN2B	CDKN2B-AS1;LOC102724137			100048912;102724137			rs1011970-T	rs1011970	0	1011970	intron;intron	0	0.17	6E-8	7.221848749616355		   1.06	[1.03-1.08] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	9q31.2	9	108126198	Intergenic	CHCHD4P2 - RPL36P14	100128657	347292		       28.35	      500.57	rs865686-T	rs865686	0	865686	Intergenic	1	0.62	1E-34	34		   1.12	[1.1-1.14] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q21.2	10	62518923	ZNF365	ZNF365			22891			rs10995190-G	rs10995190	0	10995190	intron	0	0.84	1E-36	35.99999999999999		   1.16	[1.14-1.19] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q22.3	10	79081391	ZMIZ1	ZMIZ1			57178			rs704010-T	rs704010	0	704010	intron	0	0.38	7E-22	21.15490195998574		   1.08	[1.06-1.10] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q26.13	10	121577821	FGFR2	FGFR2			2263			rs2981579-A	rs2981579	0	2981579	intron	0	0.4	2E-170	169.698970004336		   1.27	[1.24-1.29] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11p15.5	11	1887776	LSP1	LSP1;LOC102724536			4046;102724536			rs3817198-C	rs3817198	0	3817198	intron;UTR-3	0	0.31	2E-11	10.69897000433602		   1.07	[1.05-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11q13.3	11	69513996	Intergenic	IFITM9P - CCND1	390218	595		      210.19	      127.11	rs614367-T	rs614367	0	614367	Intergenic	1	0.15	2E-63	62.69897000433601		   1.21	[1.18-1.24] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12p11.22	12	28002147	PTHLH	PTHLH - CCDC91	5744	55297		       30.16	      188.28	rs10771399-A	rs10771399	0	10771399	Intergenic	1	0.88	8E-31	30.09691001300805		   1.16	[1.14-1.2] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12q24.21	12	115398717	Intergenic	TBX3 - UBA52P7	6926	100128617		      714.55	      193.89	rs1292011-A	rs1292011	0	1292011	Intergenic	1	0.58	9E-22	21.04575749056067		   1.09	[1.06-1.11] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q24.1	14	68567965	RAD51L1	RAD51B			5890			rs999737-C	rs999737	0	999737	intron	0	0.77	3E-19	18.52287874528033		   1.09	[1.06-1.11] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	16q12.1	16	52552429	TOX3	CASC16			643714			rs3803662-A	rs3803662	0	3803662	ncRNA	0	0.26	2E-114	113.698970004336		   1.24	[1.21-1.27] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	17q22	17	54979110	COX11	STXBP4			252983			rs6504950-G	rs6504950	0	6504950	intron	0	0.72	2E-13	12.69897000433602		   1.06	[1.04-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	21q21.1	21	15148511	NRIP1	NRIP1 - CYCSP42	8204	343727		       83.58	      342.01	rs2823093-G	rs2823093	0	2823093	Intergenic	1	0.73	7E-16	15.15490195998574		   1.09	[1.06-1.11] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q31.1	2	173348166	CDCA7	RPS2P18 - CDCA7	643960	83879		       49.61	        6.67	rs1550623-A	rs1550623	0	1550623	Intergenic	1	0.84	3E-8	7.522878745280337		   1.06	[1.03-1.09] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	5q11.2	5	59041654	PDE4D	PDE4D			5144			rs1353747-T	rs1353747	0	1353747	intron	0	0.905	3E-8	7.522878745280337		   1.09	[1.05-1.12] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	8q21.11	8	75505702	HNF4G	HIGD1AP6 - HNF4G	100874436	3174		      203.13	       34.27	rs2943559-G	rs2943559	0	2943559	Intergenic	1	0.07	6E-15	14.22184874961635		   1.13	[1.09-1.17 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10p12.31	10	22026914	DNAJC1	DNAJC1 - ADIPOR1P1	64215	645220		       23.19	      137.66	rs11814448-C	rs11814448	0	11814448	Intergenic	1	0.02	9E-16	15.04575749056067		   1.26	[1.18-1.35] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
09/12/2013	23535729	Michailidou K	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535729	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	18q11.2	18	26990703	CHST9	CHST9			83539			rs1436904-T	rs1436904	0	1436904	intron	0	0.6	3E-8	7.522878745280337		   1.04	[1.02-1.06] 	Illumina & Affymetrix [~2.6 million] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	9p22.2	9	16915023	NR	LSM1P1 - RPL31P42	100820732	100271197		      139.28	      193.28	rs3814113-?	rs3814113	0	3814113	Intergenic	1	0.68	4E-29	28.39794000867204	(All invasive)	   1.21	[1.17-1.25] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	9p22.2	9	16915023	NR	LSM1P1 - RPL31P42	100820732	100271197		      139.28	      193.28	rs3814113-?	rs3814113	0	3814113	Intergenic	1	0.68	4E-32	31.39794000867204	(Serious invasive)	   1.28	[1.23-1.33] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	8q24.21	8	128531703	MYC	LINC01263 - LINC00977	101927774	728724		      103.79	      684.76	rs10088218-?	rs10088218	0	10088218	Intergenic	1	0.87	3E-12	11.52287874528034	(All invasive)	   1.18	[1.13-1.24] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	8q24.21	8	128531703	NR	LINC01263 - LINC00977	101927774	728724		      103.79	      684.76	rs10088218-?	rs10088218	0	10088218	Intergenic	1	0.87	1E-17	17	(Serious invasive)	   1.29	[1.21-1.36] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	2q31.1	2	176177905	NR	HOXD-AS1			401022;102800310			rs2072590-?	rs2072590	0	2072590	ncRNA;nearGene-5	0	0.32	5E-11	10.30102999566398	(All invasive)	   1.11	[1.08-1.15] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	2q31.1	2	176177905	NR	HOXD-AS1			401022;102800310			rs2072590-?	rs2072590	0	2072590	ncRNA;nearGene-5	0	0.32	3E-10	9.522878745280336	(Serious invasive)	   1.13	[1.09-1.18] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	3q25.31	3	156689208	NR	TIPARP			25976			rs7651446-?	rs7651446	0	7651446	intron	0	0.05	2E-29	28.69897000433602	(All invasive)	   1.44	[1.35-1.54] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	3q25.31	3	156689208	NR	TIPARP			25976			rs7651446-?	rs7651446	0	7651446	intron	0	0.05	2E-34	33.69897000433602	(Serious invasive)	   1.59	[1.48-1.71] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	19p13.11	19	17278895	NR	BABAM1			29086			rs8170-?	rs8170	0	8170	missense	0	0.19	2E-7	6.698970004336019	(All invasive)	   1.11	[1.07-1.15] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	19p13.11	19	17278895	NR	BABAM1			29086			rs8170-?	rs8170	0	8170	missense	0	0.19	3E-14	13.52287874528034	(Serious invasive)	   1.19	[1.14-1.25] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	17q21.32	17	48334138	NR	SKAP1			8631			rs9303542-?	rs9303542	0	9303542	intron	0	0.27	6E-9	8.221848749616356	(All invasive)	   1.12	[1.08-1.16] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	17q21.32	17	48334138	NR	SKAP1			8631			rs9303542-?	rs9303542	0	9303542	intron	0	0.27	3E-10	9.522878745280336	(Serious invasive)	   1.14	[1.09-1.18] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	8q21.13	8	81741409	CHMP4C, FABP5, PMP2, FABP4, FABP12, IMPA1, SLC10A5, ZFAND1, SNX16	CHMP4C			92421			rs11782652-A	rs11782652	0	11782652	intron	0	0.07	6E-9	8.221848749616356	(All invasive)	   1.19	[1.12-1.26] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	8q21.13	8	81741409	CHMP4C, FABP5, PMP2, FABP4, FABP12, IMPA1, SLC10A5, ZFAND1, SNX16	CHMP4C			92421			rs11782652-A	rs11782652	0	11782652	intron	0	0.07	7E-10	9.154901959985741	(Serious invasive)	   1.24	[1.16-1.33] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	10p12.31	10	21626690	MLLT10, NEBL, C10orf113, C10orf114, SKIDA1, DNAJC1	MLLT10			8028			rs1243180-T	rs1243180	0	1243180	intron	0	0.31	2E-8	7.698970004336018	(All invasive)	   1.10	[1.06-1.13] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	10p12.31	10	21626690	MLLT10, NEBL, C10orf113, C10orf114, SKIDA1, DNAJC1	MLLT10			8028			rs1243180-T	rs1243180	0	1243180	intron	0	0.31	1E-7	7	(Serious invasive)	   1.11	[1.07-1.15] 	Illumina [2,508,744] (Imputed)	N
07/12/2013	23535730	Pharoah PD	04/01/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535730	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian cases, 972 East Asian controls, 39,674 European ancestry individuals, 106 Malaysian cases, 106 Malaysian controls	17q12	17	37736525	HNF1B, ACACA, C17orf78, TADA2A, DUSP14, SYNRG, DDX52, TBC1D3F, TBC1D3, MRPL45, GPR179, SOCS7, ARHGAP23	HNF1B			6928			rs757210-G	rs757210	0	757210	intron	0	0.37	8E-10	9.096910013008054	(Serious invasive)	   1.12	[1.08-1.17] 	Illumina [2,508,744] (Imputed)	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	810 Korean ancestry cases, 1709 Korean ancestry controls	13q12.13	13	26957130	Intergenic	FGFR1OP2P1 - RPS21P8	100873883	100873798		       51.35	       20.42	rs17085007-C	rs17085007	0	17085007	Intergenic	1	0.17	3E-7	6.522878745280337		   1.37	[1.22-1.55] 	Illumina [581,060] 	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	6	32619077	HLA-DRB1, HLA-DQA1	TRNAI25			100189401			rs9271366-G	rs9271366	0	9271366		0	0.11	1E-18	18		   2.10	[1.78-2.48] 	Illumina [581,060] 	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	16q24.1	16	85976134	IRF8	MIR6774 - LINC01082	102466732	100506542		       57.72	      220.05	rs16940186-G	rs16940186	0	16940186	Intergenic	1	0.21	4E-10	9.397940008672037		   1.56	[1.36-1.80] 	Illumina [581,060] 	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	1p36.13	1	19874497	RNF186, OTUD3, PLA2G2E	RNF186 - OTUD3	54546	23252		       59.22	        7.37	rs4654903-?	rs4654903	0	4654903	Intergenic	1	0.75	7E-9	8.154901959985743		   1.56	[1.35-1.82] 	Illumina [581,060] 	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p21.32	6	32461866	MHC	TRNAI25			100189401			rs9268853-T	rs9268853	0	9268853		0	0.64	3E-6	5.522878745280337		   1.37	[1.20-1.56] 	Illumina [581,060] 	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	13q12.13	13	26957130	Intergernic	FGFR1OP2P1 - RPS21P8	100873883	100873798		       51.35	       20.42	rs17085007-C	rs17085007	0	17085007	Intergenic	1	0.18	8E-6	5.096910013008055		   1.40	[1.21-1.63] 	Illumina [581,060] 	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	16q24.1	16	85980635	Intergenic	MIR6774 - LINC01082	102466732	100506542		       62.22	      215.55	rs16940202-C	rs16940202	0	16940202	Intergenic	1	0.22	3E-9	8.522878745280337		   1.52	[1.32-1.74] 	Illumina [581,060] 	N
07/27/2013	23511034	Yang SK	04/01/2013	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/23511034	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	6p22.1	6	29966386	HCG9	TRNAI25			100189401			rs6935053-?	rs6935053	0	6935053		0	NR	2E-6	5.698970004336018	(Conditioned on rs9271366)	NR	NR	Illumina [581,060] 	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	1q32.3	1	212953223	VASH2	VASH2			79805			rs3002288-A	rs3002288	0	3002288	intron	0	NR	7E-8	7.154901959985742	(Brown eye color)	    .22	[0.14-0.30] unit decrease	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	5p15.31	5	6767199	POLS	PAPD7 - MIR4278	11044	100422999		        2.46	       60.65	rs12520016-G	rs12520016	0	12520016	Intergenic	1	NR	9E-7	6.045757490560675	(Intermediate/Green eye color)	    .42	[0.26-0.58] unit increase	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	15q13.1	15	27951675	OCA2	OCA2			4948			rs7173419-T	rs7173419	0	7173419	intron	0	NR	1E-7	7	(Brown eye color)	    .33	[0.21-0.45] unit increase	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	15q13.1	15	28120472	HERC2	HERC2			8924			rs12913832-A	rs12913832	0	12913832	intron	0	NR	1E-177	177	(Brown eye color)	   2.82	[2.62-3.02] unit increase	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	9p23	9	12672097	TYRP1	JKAMPP1 - TYRP1	100049717	7306		      382.86	       21.29	rs1408799-C	rs1408799	0	1408799	Intergenic	1	NR	5E-7	6.30102999566398	(Blue eye color)	    .27	[0.17-0.37] unit decrease	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-G	rs12896399	0	12896399	Intergenic	1	NR	4E-11	10.39794000867204	(Blue eye color)	    .33	[0.23-0.43] unit increase	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	15q13.1	15	28120472	HERC2	HERC2			8924			rs12913832-G	rs12913832	0	12913832	intron	0	NR	1E-158	158	(Blue eye color)	   2.84	[2.62-3.06] unit decrease	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-G	rs12896399	0	12896399	Intergenic	1	NR	3E-7	6.522878745280337	(Intermediate/Green eye color)	    .27	[0.17-0.37] unit decrease	Illumina & Affymetrix [2,469,762] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	13q22.3	13	77807011	EDNRB	MIR3665 - EDNRB-AS1	100500861	100505518		      108.90	       11.93	rs975739-G	rs975739	0	975739	Intergenic	1	NR	2E-14	13.69897000433602		    .08	[0.060-0.100] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-C	rs12203592	0	12203592	intron	0	NR	1E-28	28		    .35	[0.29-0.41] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	12q21.33	12	88934558	KITLG	KITLG - MRPS6P4	4254	359782		      354.09	      384.74	rs12821256-C	rs12821256	0	12821256	Intergenic	1	NR	7E-19	18.15490195998574		    .18	[0.14-0.22] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399--G	rs12896399	0	12896399	Intergenic	1	NR	2E-36	35.69897000433601		    .16	[0.14-0.18] unit decrease	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	15q13.1	15	28120472	HERC2	HERC2			8924			rs12913832-G	rs12913832	0	12913832	intron	0	NR	1E-167	167		    .39	[0.37-0.41] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-C	rs1805007	0	1805007	missense	0	NR	3E-9	8.522878745280337		    .16	[0.10-0.22] unit decrease	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-T	rs12203592	0	12203592	intron	0	NR	7E-14	13.15490195998574		    .21	[0.15-0.27] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	6p25.3	6	471136	IRF4, EXOC2	IRF4 - EXOC2	3662	55770		       59.69	       14.00	rs12202284-A	rs12202284	0	12202284	Intergenic	1	NR	5E-8	7.30102999566398		    .15	[0.091-0.209] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	14q22.1	14	51843386	GNG2	OR7E159P - GNG2	403299	54331		       71.29	        3.79	rs8015138-C	rs8015138	0	8015138	Intergenic	1	NR	7E-8	7.154901959985742		    .11	[0.071-0.149] unit decrease	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-C	rs1805007	0	1805007	missense	0	NR	3E-10	9.522878745280336		    .34	[0.24-0.44] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	11q25	11	131481074	NTM	NTM			50863			rs12421680-A	rs12421680	0	12421680	intron	0	NR	6E-6	5.221848749616356		    .41	[0.23-0.59] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-T	rs12203592	0	12203592	intron	0	NR	2E-6	5.698970004336018		   1.13	[0.66-1.60] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	11q14.3	11	89284793	TYR	TYR			7299			rs1126809-G	rs1126809	0	1126809	missense	0	NR	2E-8	7.698970004336018		    .60	[0.38-0.82] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-C	rs1805007	0	1805007	missense	0	NR	2E-19	18.69897000433602		   1.66	[1.31-2.01] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-C	rs12203592	0	12203592	intron	0	NR	3E-23	22.52287874528034		    .35	[0.29-0.41] unit decrease	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		11q14.3	11	89284793	TYR	TYR			7299			rs1126809-G	rs1126809	0	1126809	missense	0	NR	5E-21	20.30102999566398		    .12	[0.10-0.14] unit decrease	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		15q13.1	15	28120472	HERC2	HERC2			8924			rs12913832-G	rs12913832	0	12913832	intron	0	NR	1E-22	22		    .14	[0.12-0.16] unit increase	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-C	rs1805007	0	1805007	missense	0	NR	1E-65	65		    .39	[0.35-0.43] unit decrease	Illumina & Affymetrix [7,588,169] (Imputed)	N
08/10/2013	23548203	Zhang M	04/01/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23548203	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		20q11.22	20	34141638	ASIP	RPS2P1 - XPOTP1	140755	170559		       18.30	       71.66	rs4911414-G	rs4911414	0	4911414	Intergenic	1	NR	4E-9	8.397940008672036		    .07	[0.050-0.090] unit decrease	Illumina & Affymetrix [7,588,169] (Imputed)	N
07/25/2013	23555300	Cui J	03/28/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23555300	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF treatment in rheumatoid arthritis	Up to 2,706 European ancestry cases	NR	10p14	10	6747501	NR	PRKCQ-AS1 - LINC00706	439949	100652997		      162.14	       26.80	rs12570744-T	rs12570744	0	12570744	Intergenic	1	0.17	2E-7	6.698970004336019	(infliximab, delta-DAS analysis)	    .49	[NR] unit decrease	Illumina and Affymetrix [~ 2 Million] (Imputed)	N
07/25/2013	23555300	Cui J	03/28/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23555300	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF treatment in rheumatoid arthritis	Up to 2,706 European ancestry cases	NR	14q13.1	14	34665980	NR	RPS19P3 - RPL23AP8	728953	641614		       96.81	       28.18	rs7141276-A	rs7141276	0	7141276	Intergenic	1	0.41	2E-6	5.698970004336018	(all patients, EULAR response analysis)	    .37	[NR] unit increase	Illumina and Affymetrix [~ 2 Million] (Imputed)	N
07/25/2013	23555300	Cui J	03/28/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23555300	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF treatment in rheumatoid arthritis	Up to 2,706 European ancestry cases	NR	5q35.2	5	175184337	NA	NIFKP2 - ARL2BPP6	645398	100874421		      260.34	      106.39	rs4336372-C	rs4336372	0	4336372	Intergenic	1	0.34	1E-6	5.999999999999999	(infliximab, EULAR response analysis)	    .65	[NR] unit decrease	Illumina and Affymetrix [~ 2 Million] (Imputed)	N
07/25/2013	23555300	Cui J	03/28/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23555300	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF treatment in rheumatoid arthritis	733 European ancestry cases	139 Portuguese ancestry cases; 151 Japanese ancestry cases	1q23.3	1	160546518	CD84	CD84			8832			rs6427528-A	rs6427528	0	6427528	UTR-3	0	0.08	2E-6	5.698970004336018	(Etanercept, EA)	NR	NR	Illumina [~2 Million] (Imputed)	N
07/25/2013	23555300	Cui J	03/28/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23555300	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF treatment in rheumatoid arthritis	Up to 2,706 European ancestry cases	NR	5q35.2	5	175184337	NR	NIFKP2 - ARL2BPP6	645398	100874421		      260.34	      106.39	rs4336372-C	rs4336372	0	4336372	Intergenic	1	0.34	3E-6	5.522878745280337	(infliximab, delta-DAS analysis)	    .34	[NR] unit decrease	Illumina and Affymetrix [~ 2 Million] (Imputed)	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	Heart rate	455 African American individuals	NR	8p11.23	8	37238541	Intergenic	SMARCE1P4 - ZNF703	642879	80139		      142.13	      457.24	rs1015003-G	rs1015003	0	1015003	Intergenic	1	NR	1E-6	5.999999999999999		   3.94	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	Heart rate	455 African American individuals	NR	5p15.32	5	4831488	Intergenic	IRX1 - LINC01020	79192	340094		     1230.09	      202.87	rs816475-T	rs816475	0	816475	Intergenic	1	NR	3E-6	5.522878745280337		   3.69	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	Heart rate	455 African American individuals	NR	3q26.1	3	167790274	SERPINI1	SERPINI1			5274			rs13090836-T	rs13090836	0	13090836	intron	0	NR	7E-6	5.154901959985742		   3.58	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	Heart rate	455 African American individuals	NR	12q24.33	12	129152803	TMEM132D	TMEM132D			121256			rs12824981-T	rs12824981	0	12824981	intron	0	NR	9E-6	5.045757490560675		   4.56	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	Heart rate	455 African American individuals	NR	9q33.2	9	121713734	DAB2IP	DAB2IP			153090			rs35061590-T	rs35061590	0	35061590	intron	0	NR	9E-6	5.045757490560675		  16.03	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	11p15.3	11	12138114	MICAL2	MICAL2			9645			rs1994318-A	rs1994318	0	1994318	intron	0	NR	2E-6	5.698970004336018		   6.79	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	6q23.1	6	130228918	Intergenic	SAMD3			154075			rs10447419-A	rs10447419	0	10447419	intron	0	NR	2E-6	5.698970004336018		   8.65	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	10p12.1	10	26005899	MYO3A	MYO3A			53904			rs16926523-A	rs16926523	0	16926523	intron	0	NR	4E-6	5.397940008672037		   9.55	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	2q35	2	214477166	VWC2L	VWC2L			402117			rs7604827-C	rs7604827	0	7604827	intron	0	NR	5E-6	5.301029995663981		   6.54	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	3q27.3	3	187738921	BCL6	BCL6			604			rs3733017-G	rs3733017	0	3733017	intron	0	NR	6E-6	5.221848749616356		  10.07	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	15q14	15	39284359	Intergenic	C15orf54 - THBS1	400360	7057		       29.51	      296.72	rs746265-C	rs746265	0	746265	Intergenic	1	NR	8E-6	5.096910013008055		   6.27	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	3p14.1	3	65500713	MAGI1	MAGI1			9223			rs1524976-A	rs1524976	0	1524976	intron	0	NR	8E-6	5.096910013008055		   8.00	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	1p34.2	1	39968099	MFSD2	MFSD2A			84879			rs3103778-G	rs3103778	0	3103778	intron	0	NR	9E-6	5.045757490560675		   6.30	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	PR interval	455 African American individuals	NR	15q14	15	39281334	Intergenic	C15orf54 - THBS1	400360	7057		       26.49	      299.75	rs12595668-G	rs12595668	0	12595668	Intergenic	1	NR	9E-6	5.045757490560675		   6.26	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	14q31.3	14	85270825	Intergenic	RNU7-51P - RNU3P3	100151647	26843		     2222.19	        1.08	rs1867082-A	rs1867082	0	1867082	Intergenic	1	NR	1E-6	5.999999999999999		   2.82	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	6q22.31	6	124629917	NKAIN2	NKAIN2			154215			rs504008-C	rs504008	0	504008	intron	0	NR	3E-6	5.522878745280337		   2.70	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	5q21.1	5	102067882	Intergenic	OR7H2P - RNA5SP188	403301	100873450		      251.10	       63.24	rs6861497-A	rs6861497	0	6861497	Intergenic	1	NR	5E-6	5.301029995663981		   2.34	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	11q13.2	11	67947557	Intergenic	RPS3AP40 - OR7E1P	100129199	341128		       21.10	       26.68	rs308309-C	rs308309	0	308309	Intergenic	1	NR	5E-6	5.301029995663981		   4.39	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	6q22.33	6	127873328	C6orf190	THEMIS			387357			rs12194062-T	rs12194062	0	12194062	intron	0	NR	5E-6	5.301029995663981		   5.16	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	4q23	4	99216337	ADH6	ADH6;LOC100507053			130;100507053			rs6820368-C	rs6820368	0	6820368	intron;intron	0	NR	6E-6	5.221848749616356		   9.90	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	12q15	12	69130143	Intergenic	CPM - CPSF6	1368	11052		      166.90	      109.39	rs10784762-T	rs10784762	0	10784762	Intergenic	1	NR	6E-6	5.221848749616356		   2.38	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	16q24.1	16	85927956	Intergenic	MIR6774 - LINC01082	102466732	100506542		        9.54	      268.23	rs17444745-A	rs17444745	0	17444745	Intergenic	1	NR	7E-6	5.154901959985742		   6.40	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QRS duration	455 African American individuals	NR	1q25.3	1	185825751	HMCN1	HMCN1			83872			rs13375391-A	rs13375391	0	13375391	intron	0	NR	9E-6	5.045757490560675		   5.82	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	5q13.2	5	73981078	Intergenic	ARHGEF28 - ENC1	64283	8507		       39.09	      646.33	rs6894385-C	rs6894385	0	6894385	Intergenic	1	NR	1E-6	5.999999999999999		   9.92	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	6q12	6	67176026	Intergenic	NUFIP1P - RNA5SP208	89761	100873468		     1081.08	      291.21	rs9342616-A	rs9342616	0	9342616	Intergenic	1	NR	1E-6	5.999999999999999		   6.92	[NR] ms decrease	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	7q36.2	7	154717614	DPP6	DPP6			1804			rs12666280-C	rs12666280	0	12666280	intron	0	NR	2E-6	5.698970004336018		   8.93	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	20q13.13	20	49365591	Intergenic	SNORD12 - KCNB1	692057	3745		       84.82	        2.82	rs237450-A	rs237450	0	237450	Intergenic	1	NR	5E-6	5.301029995663981		   6.86	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	4p15.32	4	16906381	Intergenic	LDB2 - MTND5P4	9079	100873200		        7.58	      155.50	rs6819013-A	rs6819013	0	6819013	Intergenic	1	NR	6E-6	5.221848749616356		   6.06	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	4p15.32	4	15963240	FGFBP2	FGFBP2			83888			rs4698433-T	rs4698433	0	4698433	nearGene-5	0	NR	6E-6	5.221848749616356		   7.23	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	4p15.32	4	16892270	LDB2	LDB2			9079			rs1483012-G	rs1483012	0	1483012	intron	0	NR	7E-6	5.154901959985742		   6.02	[NR] ms increase	Illumina [>930,000]	N
07/31/2013	23534349	Jeff JM	03/28/2013	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23534349	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in african americans.	QT interval	455 African American individuals	NR	16p13.2	16	8453220	Intergenic	RPS26P51 - TMEM114	100271576	283953		     1326.58	      116.28	rs8045405-G	rs8045405	0	8045405	Intergenic	1	NR	9E-6	5.045757490560675		  11.38	[NR] ms decrease	Illumina [>930,000]	N
07/05/2013	23535911	Kitamoto T	03/28/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535911	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Non-alcoholic fatty liver disease	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	1p35.2	1	29792805	PTPRU	PTPRU - MATN1	10076	4146		      465.99	      918.47	rs6691847-C	rs6691847	0	6691847	Intergenic	1	0.77	7E-6	5.154901959985742		   1.32	[0.98-1.77] 	Illumina [261,540]	N
07/05/2013	23535911	Kitamoto T	03/28/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535911	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Non-alcoholic fatty liver disease	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	1p13.2	1	115378734	NGF	NGF - TCEB1P20	4803	100287778		       40.35	      178.01	rs7552722-A	rs7552722	0	7552722	Intergenic	1	0.32	7E-6	5.154901959985742		   1.27	[1.00-1.61] 	Illumina [261,540]	N
07/05/2013	23535911	Kitamoto T	03/28/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535911	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Non-alcoholic fatty liver disease	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	13q13.3	13	35880056	DCLK1	DCLK1			9201			rs2051090-G	rs2051090	0	2051090	intron	0	0.81	7E-6	5.154901959985742		   1.19	[0.88-1.62] 	Illumina [261,540]	N
07/05/2013	23535911	Kitamoto T	03/28/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535911	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Non-alcoholic fatty liver disease	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	22q13.31	22	43937814	PNPLA3, SAMM50, PARVB	PNPLA3			80339			rs2896019-G	rs2896019	0	2896019	intron	0	0.45	2E-20	19.69897000433602		   2.02	[1.60-2.56] 	Illumina [261,540]	N
07/05/2013	23535967	Tin A	03/28/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535967	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		2p13.1	2	73673773	NAT8	ALMS1P			200420			rs10206899-C	rs10206899	0	10206899	intron	0	0.23	4E-8	7.397940008672037	(Single-measure model)	   1.17	[0.76-1.58] unit increase	Affymetrix [>2.5 million] imputed	N
07/05/2013	23535967	Tin A	03/28/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535967	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		2p13.1	2	73673773	NAT8	ALMS1P			200420			rs10206899-C	rs10206899	0	10206899	intron	0	0.23	6E-9	8.221848749616356	(3-measure model)	   1.10	[0.73-1.47] unit increase	Affymetrix [>2.5 million] imputed	N
07/05/2013	23535967	Tin A	03/28/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535967	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		4q21.1	4	76476862	SHROOM3	SHROOM3			57619			rs10032549-A	rs10032549	0	10032549	intron	0	0.47	1E-8	8	(3-measure model)	    .93	[0.62-1.24] unit increase	Affymetrix [>2.5 million] imputed	N
07/05/2013	23535967	Tin A	03/28/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535967	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		15q21.1	15	45426989	SPATA5L1	SPATA5L1 - C15orf48	79029	84419		        5.57	        3.54	rs17536527-C	rs17536527	0	17536527	Intergenic	1	0.47	8E-10	9.096910013008054	(3-measure Model)	   1.13	[0.78-1.48] unit decrease	Affymetrix [>2.5 million] imputed	N
07/05/2013	23535967	Tin A	03/28/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535967	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		2p13.1	2	73673773	NAT8	ALMS1P			200420			rs10206899-C	rs10206899	0	10206899	intron	0	0.23	2E-9	8.698970004336019	(6-measure model)	   1.10	[0.75-1.45] unit increase	Affymetrix [>2.5 million] imputed	N
07/05/2013	23535967	Tin A	03/28/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23535967	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		4q21.1	4	76489165	SHROOM3	SHROOM3			57619			rs4859682-A	rs4859682	0	4859682	intron	0	0.45	2E-9	8.698970004336019	(6-measure Model)	    .96	[0.65-1.27] unit decrease	Affymetrix [>2.5 million] imputed	N
07/25/2013	23539754	Yamada Y	03/28/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23539754	Identification of chromosome 3q28 and ALPK1 as susceptibility loci for chronic kidney disease in Japanese individuals by a genome-wide association study.	Chronic kidney disease	252 Japanese ancestry cases, 249 Japanese ancestry controls	1,100 Japanese ancestry cases, 2,250 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [297,707]	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	1q32.1	1	204546897	MDM4	MDM4			4194			rs2290854-A	rs2290854	0	2290854	intron	0	0.31	1E-7	7		   1.13	[1.08-1.18] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	10q25.2	10	112974337	TCF7L2	TCF7L2			6934			rs11196174-G	rs11196174	0	11196174	intron	0	0.28	8E-7	6.096910013008056		   1.13	[1.07-1.18] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	7p21.3	7	8512984	NR	NXPH1			30010			rs765855-?	rs765855	0	765855	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	19p13.11	19	17278895	Intergenic	BABAM1			29086			rs8170-G	rs8170	0	8170	missense	0	0.48	4E-13	12.39794000867204		   1.19	[1.14-1.25] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	6q25.1	6	151627231	Intergenic	CCDC170 - ESR1	80129	2099		        6.04	       63.27	rs2046210-C	rs2046210	0	2046210	Intergenic	1	0.08	5E-9	8.301029995663981		   1.28	[1.18-1.39] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	12p11.22	12	28002147	Intergenic	PTHLH - CCDC91	5744	55297		       30.16	      188.28	rs10771399-A	rs10771399	0	10771399	Intergenic	1	0.86	8E-6	5.096910013008055		   1.18	[1.1-1.27] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers 	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	17	45439036	Intergenic	PLEKHM1			9842			rs17631303-G	rs17631303	0	17631303	intron	0	0.19	1E-8	8		   1.27	[1.17-1.38] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers 	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	17	46710944	Intergenic	NSF			4905			rs183211-A	rs183211	0	183211	intron	0	0.23	3E-8	7.522878745280337		   1.25	[1.16-1.35] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers 	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	4q32.3	4	164987569	Intergenic	FAM218A - RPL21P51	152756	100271169		       28.45	       24.76	rs4691139-G	rs4691139	0	4691139	Intergenic	1	0.48	3E-8	7.522878745280337		   1.20	[1.17-1.38] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers 	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	9p22.2	9	16915023	Intergenic	LSM1P1 - RPL31P42	100820732	100271197		      139.28	      193.28	rs3814113-A	rs3814113	0	3814113	Intergenic	1	0.66	6E-11	10.22184874961635		   1.30	[1.2-1.41] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers 	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	3q25.31	3	156679960	Intergenic	TIPARP;LOC102724343			25976;102724343			rs2665390-C	rs2665390	0	2665390	intron;nearGene-5	0	0.043	7E-6	5.154901959985742		   1.46	[1.25-1.71] 	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers 	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	17	45439036	NR	PLEKHM1			9842			rs17631303-?	rs17631303	0	17631303	intron	0	NR	1E-8	8		NR	NR	Illumina [2,568,349] (Imputed)	N
08/02/2013	23544013	Couch FJ	03/27/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23544013	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers 	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	17	46710944	NR	NSF			4905			rs183211-?	rs183211	0	183211	intron	0	NR	3E-8	7.522878745280337		NR	NR	Illumina [2,568,349] (Imputed)	N
06/27/2013	23541324	Li X	03/27/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23541324	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		22q13.31	22	45272131	UPK3A	MIR1249 - RPS10P31	100302149	100129939		       71.11	        3.40	rs58667-A	rs58667	0	58667	Intergenic	1	0.38	4E-7	6.397940008672037	(ppFEV1)	    .18	[NR] unit increase	Illumina [369,771]	N
06/27/2013	23541324	Li X	03/27/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23541324	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		10q26.11	10	117467831	EMX2	PDZD8 - EMX2OS	118987	196047		       92.39	       16.46	rs4752066-T	rs4752066	0	4752066	Intergenic	1	0.10	6E-7	6.221848749616355	(ppFEV1)	    .30	[NR] unit decrease	Illumina [369,771]	N
06/27/2013	23541324	Li X	03/27/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23541324	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		18p11.32	18	849177	YES1	YES1 - ADCYAP1	7525	116		       36.85	       55.19	rs1291183-T	rs1291183	0	1291183	Intergenic	1	0.30	4E-6	5.397940008672037	(ppFEV1)	    .18	[NR] unit decrease	Illumina [369,771]	N
06/27/2013	23541324	Li X	03/27/2013	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23541324	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		19p13.11	19	18021731	IL12RB1	ARRDC2 - RPS18P13	27106	100271364		        7.63	       26.90	rs12984174-T	rs12984174	0	12984174	Intergenic	1	0.87	9E-6	5.045757490560675	(ppFVC)	    .26	[NR] unit decrease	Illumina [369,771]	N
06/26/2013	23532257	Ma RC	03/27/2013	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/23532257	Genome-wide association study in a Chinese population identifies a susceptibility locus for type 2 diabetes at 7q32 near PAX4.	Type 2 diabetes	684 Han Chinese ancestry cases, 955 Han Chinese ancestry controls	18,954 East Asian ancestry cases, 18,029 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,204 Singaporean Malay ancestry controls, 977 Singaporean Indian ancestry cases, 1,169 Singaporean Indian ancestry controls, 8,130 European ancestry cases, 38,987 European ancestry controls	7q32.1	7	127606849	ARF5, PAX4, SND1	FSCN3 - PAX4	29999	5078		        5.05	        3.44	rs10229583-G	rs10229583	0	10229583	Intergenic	1	0.825	2E-10	9.698970004336017	(East Asian)	   1.14	[1.09-1.19] 	Illumina [2,925,090] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		1q24.3	1	171588461	PRRC2C	PRRC2C			23215			rs2421847-?	rs2421847	0	2421847	missense	0	0.04	9E-7	6.045757490560675		    .26	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		1q43	1	240441752	FMN2	FMN2			56776			rs12091371-?	rs12091371	0	12091371	intron	0	0.07	7E-8	7.154901959985742		    .17	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		2p12	2	80054047	CTNNA2	CTNNA2			1496			rs6738962-?	rs6738962	0	6738962	intron	0	0.04	1E-8	8		    .18	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		2q14.3	2	127638592	LIMS2	LIMS2			55679			rs78022502-?	rs78022502	0	78022502	ncRNA	0	0.06	2E-6	5.698970004336018		    .23	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		3p22.1	3	39471787	MOBP	MOBP			4336			rs538867-?	rs538867	0	538867	intron	0	0.03	1E-7	7		    .26	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		4p16.2	4	5235426	STK32B	STK32B			55351			rs78647349-?	rs78647349	0	78647349	intron	0	0.04	5E-7	6.30102999566398		    .30	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		4q21.3	4	87010252	AFF1	AFF1			4299			rs340635-?	rs340635	0	340635	intron	0	0.03	2E-7	6.698970004336019		    .23	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q11.2	5	56214829	ANKRD55	ANKRD55			79722			rs4700060-?	rs4700060	0	4700060	intron	0	0.1	1E-8	8		    .21	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q21.3	5	109885325	PGAM5P1,MAN2A1	LOC100289673			100289673			rs112724034-?	rs112724034	0	112724034	ncRNA	0	0.03	9E-13	12.04575749056067		    .31	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q22.1	5	111383489	CAMK4	CAMK4			814			rs77636885-?	rs77636885	0	77636885	intron	0	0.03	2E-6	5.698970004336018		    .30	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q23.1	5	119099432	DMXL1	DMXL1			1657			rs116348108-?	rs116348108	0	116348108	intron	0	0.04	9E-7	6.045757490560675		    .28	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q23.2	5	127393758	MEGF10	MEGF10			84466			rs143954261-?	rs143954261	0	143954261	intron	0	0.04	8E-7	6.096910013008056		    .29	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q23.3	5	128046610	FLJ33630	LINC01184			644873			rs146579248-?	rs146579248	0	146579248	intron	0	0.04	4E-7	6.397940008672037		    .21	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		5q33.2	5	154457546	SAP30L	SAP30L			79685			rs148763909-?	rs148763909	0	148763909	ncRNA	0	0.03	1E-8	8		    .15	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		6q22.31	6	124005082	NKAIN2	NKAIN2			154215			rs117780815-?	rs117780815	0	117780815	intron	0	0.03	6E-7	6.221848749616355		    .31	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		6q23.3	6	136046867	PDE7B	PDE7B;LOC644135			27115;644135			rs11154851-?	rs11154851	0	11154851	intron;intron	0	0.04	1E-8	8		    .25	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		6q25.1	6	150781694	PLEKHG1	PLEKHG1			57480			rs75253868-?	rs75253868	0	75253868	intron	0	0.03	2E-6	5.698970004336018		    .26	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p21.1	7	16668236	BZW2,TSPAN13	BZW2			28969			rs58370486-?	rs58370486	0	58370486	intron	0	0.03	6E-11	10.22184874961635		    .36	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p15.3	7	25121983	CYCS	CYCS			54205			rs1861525-?	rs1861525	0	1861525	UTR-3	0	0.03	2E-7	6.698970004336019		    .25	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p14.1	7	37325592	ELMO1	ELMO1			9844			rs2392492-?	rs2392492	0	2392492	intron	0	0.04	1E-6	5.999999999999999		    .32	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7p13	7	43337677	HECW1	HECW1			23072			rs17172199-?	rs17172199	0	17172199	intron	0	0.08	1E-6	5.999999999999999		    .28	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		7q33	7	134063193	EXOC4	EXOC4			60412			rs11770757-?	rs11770757	0	11770757	intron	0	0.04	5E-7	6.30102999566398		    .16	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		8p23.2	8	3230651	CSMD1	CSMD1			64478			rs73660619-?	rs73660619	0	73660619	intron	0	0.06	8E-7	6.096910013008056		    .26	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		8q11.23	8	52301705	ST18	ST18			9705			rs7009219-?	rs7009219	0	7009219	intron	0	0.06	5E-7	6.30102999566398		    .16	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		9q34.11	9	130177513	NCS1	NCS1			23413			rs4836694-?	rs4836694	0	4836694	intron	0	0.11	7E-7	6.154901959985743		    .21	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		10q26.12	10	120519964	PPAPDC1A	PPAPDC1A			196051			rs118048115-?	rs118048115	0	118048115	intron	0	0.04	6E-7	6.221848749616355		    .34	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		11p15.2	11	14202800	SPON1,RRAS2,PSMA1	SPON1			10418			rs11023139-?	rs11023139	0	11023139	intron	0	0.05	7E-11	10.15490195998574		    .31	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		11q23.1	11	110628530	ARHGAP20	ARHGAP20			57569			rs326946-?	rs326946	0	326946	intron	0	0.17	7E-7	6.154901959985743		    .16	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		12q13.13	12	51484976	SLC4A8	SLC4A8			9498			rs147845115-?	rs147845115	0	147845115	intron	0	0.03	3E-7	6.522878745280337		    .29	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		12q22	12	93841389	CRADD	CRADD			8738			rs61144803-?	rs61144803	0	61144803	intron	0	0.04	5E-8	7.30102999566398		    .16	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		12q23.1	12	100827461	ANO4	ANO4			121601			rs1399439-?	rs1399439	0	1399439	intron	0	0.04	4E-7	6.397940008672037		    .20	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		13q31.3	13	93293605	GPC6	GPC6			10082			rs143258881-?	rs143258881	0	143258881	intron	0	0.03	7E-8	7.154901959985742		    .29	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		13q33.3	13	108821598	MYO16	MYO16			23026			rs17393344-?	rs17393344	0	17393344	intron	0	0.06	2E-8	7.698970004336018		    .26	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		14q32.13	14	95298227	CLMN	CLMN			79789			rs115102486-?	rs115102486	0	115102486	intron	0	0.03	2E-8	7.698970004336018		    .31	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		15q12	15	27467498	GABRG3	GABRG3			2567			rs74006954-?	rs74006954	0	74006954	intron	0	0.03	3E-7	6.522878745280337		    .28	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		15q21.3	15	58438440	LIPC	LIPC;LOC101928694			3990;101928694			rs17301739-?	rs17301739	0	17301739	intron;intron	0	0.07	2E-6	5.698970004336018		    .28	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		16p12.1	16	24664268	FLJ45256	FLJ45256			400511			rs8045064-?	rs8045064	0	8045064	intron	0	0.05	4E-8	7.397940008672037		    .21	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		16q23.1	16	77842866	VAT1L	VAT1L			57687			rs9934540-?	rs9934540	0	9934540	intron	0	0.03	4E-7	6.397940008672037		    .25	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		17q21.32	17	47853173	SP6,MRPL10,OSBPL7	SP6			80320			rs4794202-?	rs4794202	0	4794202	intron	0	0.08	8E-8	7.096910013008055		    .19	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		17q21.33	17	50614721	CACNA1G	CACNA1G			8913			rs117964204-?	rs117964204	0	117964204	intron	0	0.04	1E-9	8.999999999999998		    .28	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		17q23.2	17	61215075	BCAS3	BCAS3			54828			rs72832584-?	rs72832584	0	72832584	intron	0	0.05	1E-11	11		    .30	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		19q13.41	19	50927340	LOC390956	LOC390956			390956			rs7245858-?	rs7245858	0	7245858	missense	0	0.04	2E-6	5.698970004336018		    .28	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		20p13	20	2404326	TGM6	TGM6			343641			rs34972666-?	rs34972666	0	34972666	intron	0	0.11	3E-8	7.522878745280337		    .23	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23535033	Sherva R	03/24/2013	Alzheimers Dement	http://www.ncbi.nlm.nih.gov/pubmed/23535033	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		22q13.31	22	44130225	PARVB	PARVB			29780			rs75617873-?	rs75617873	0	75617873	intron	0	0.03	5E-7	6.30102999566398		    .17	 unit decrease	Illumina [NR] (Imputed)	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		8q22.1	8	97269961	TSPYL5	LOC101927066			101927066			rs1864729-?	rs1864729	0	1864729	intron	0	0.098	3E-8	7.522878745280337		   1.59	[1.35-1.871] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		2p11.2	2	85478554	NR	RNU7-64P - RPSAP22	100151662	100270874		       36.58	       12.37	rs11688246-?	rs11688246	0	11688246	Intergenic	1	0.052	1E-7	7		   1.83	[1.469-2.285] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		14q23.2	14	62501677	NR	LINC00644 - ATP5A1P4	101954204	100129782		      361.70	      102.44	rs4902141-?	rs4902141	0	4902141	Intergenic	1	0.026	1E-7	7		   2.16	[1.629-2.867] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		1p35.1	1	33463157	NR	MIR3605 - TLR12P	100500853	100131451		      130.67	        3.09	rs12565140-?	rs12565140	0	12565140	Intergenic	1	0.136	3E-7	6.522878745280337		   1.43	[1.247-1.629] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		1p31.1	1	80445429	NR	HMGB1P18 - HNRNPA1P64	646526	100129325		      161.46	        5.72	rs12118390-?	rs12118390	0	12118390	Intergenic	1	0.022	3E-7	6.522878745280337		   2.25	[1.658-3.06] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		4q22.3	4	94694618	NR	PDLIM5 - BMPR1B	10611	658		       26.39	       63.36	rs4699587-?	rs4699587	0	4699587	Intergenic	1	0.048	5E-7	6.30102999566398		   1.76	[1.416-2.194] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		10q11.21	10	44539224	NR	RPL9P21 - EIF2AP4	728374	100874401		      124.02	      267.22	rs7072122-?	rs7072122	0	7072122	Intergenic	1	0.051	6E-7	6.221848749616355		   1.73	[1.397-2.141] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		12q22	12	94289428	NR	PLXNC1;CEP83			10154;51134			rs4761470-?	rs4761470	0	4761470	intron;intron	0	0.177	6E-7	6.221848749616355		   1.38	[1.214-1.556] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		5q15	5	97740844	NR	YTHDF1P1 - PSME2P1	402220	257093		      370.23	      472.53	rs10515260-?	rs10515260	0	10515260	Intergenic	1	0.035	6E-7	6.221848749616355		   1.91	[1.485-2.463] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		3q26.33	3	182133496	NR	LINC01206 - FLJ46066	100996490	401103		      122.82	      313.47	rs16832889-?	rs16832889	0	16832889	Intergenic	1	0.011	1E-6	5.999999999999999		   3.09	[1.965-4.844] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		2p16.3	2	52284656	NR	LOC730100			730100			rs17042688-?	rs17042688	0	17042688	intron	0	0.038	1E-6	5.999999999999999		   1.91	[1.474-2.476] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		11q24.2	11	126160720	NR	NAP1L1P1 - RPUSD4	729561	84881		       92.12	       41.37	rs10501858-?	rs10501858	0	10501858	Intergenic	1	0.091	1E-6	5.999999999999999		   1.54	[1.295-1.829] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		2q11.2	2	101413184	NR	RFX8			731220			rs12620464-?	rs12620464	0	12620464	intron	0	0.143	1E-6	5.999999999999999		   1.40	[1.221-1.579] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		20p12.3	20	8723905	NR	PLCB1			23236			rs6077414-?	rs6077414	0	6077414	intron	0	0.092	1E-6	5.999999999999999		   1.47	[1.257-1.711] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		1p31.3	1	65049850	NR	LOC101927084			101927084			rs478665-?	rs478665	0	478665	intron	0	0.05	1E-6	5.999999999999999		   1.77	[1.407-2.233] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		21q22.2	21	40331020	NR	DSCAM			1826			rs727333-?	rs727333	0	727333	intron	0	0.081	1E-6	5.999999999999999		   1.54	[1.295-1.837] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		3q29	3	194004541	NR	LOC647323			647323			rs724767-?	rs724767	0	724767	nearGene-5	0	0.115	2E-6	5.698970004336018		   1.44	[1.241-1.663] unit increase	Illumina [563,945]	N
06/26/2013	23518928	Liu M	03/21/2013	Mol Endocrinol	http://www.ncbi.nlm.nih.gov/pubmed/23518928	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian cases		1p36.11	1	27405147	NR	WASF2			10163			rs11548323-?	rs11548323	0	11548323	UTR-3	0	0.17	2E-6	5.698970004336018		   1.40	[1.219-1.598] unit increase	Illumina [563,945]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	9q34.2	9	133320327	NR	ABO - SURF6	28	6838		       45.11	       10.38	rs493014-G x rs886090-A	rs493014:rs886090	0	493014	Intergenic	1	NR	6E-11	10.22184874961635		   1.64	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	1p31.3	1	65230247	NR	AK4			205			rs1336472-A x rs4715555-G	rs1336472:rs4715555	0	1336472	UTR-3	0	NR	4E-10	9.397940008672037		   1.54	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	8q24.3	8	143483735	NR	ZC3H3			23144			rs380904-A x rs8086028-A	rs380904:rs8086028	0	380904	intron	0	NR	5E-10	9.301029995663981		   1.67	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	4q34.3	4	181631890	NR	LINC00290 - MGC45800	728081	90768		      472.74	      507.12	rs6815916-G x rs6092326-T	rs6815916:rs6092326	0	6815916	Intergenic	1	NR	7E-10	9.154901959985741		   2.10	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	10q26.13	10	123462521	NR	RPS26P39 - GPR26	100128168	2849		      289.87	      203.83	rs2282015-G x rs13050454-A	rs2282015:rs13050454	0	2282015	Intergenic	1	NR	8E-10	9.096910013008054		   1.50	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	3p22.3	3	32900360	NR	TRIM71 - CCR4	131405	1233		        8.08	       51.21	rs7648704-G x rs4868644-T	rs7648704:rs4868644	0	7648704	Intergenic	1	NR	1E-9	8.999999999999998		   1.56	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	9q33.1	9	117530056	NR	SNORA70C - RPL35AP22	100124538	100271507		      348.86	      155.20	rs1985317-? x rs827637-?	rs1985317:rs827637	0	1985317	Intergenic	1	NR	1E-9	8.999999999999998		   1.52	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	13q13.2	13	34032049	NR	RNU5A-4P - VDAC1P12	100873870	100874289		      202.40	       50.73	rs2321744-? x rs6497540-?	rs2321744:rs6497540	0	2321744	Intergenic	1	NR	1E-9	8.999999999999998		   2.04	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	12q15	12	69377293	NR	YEATS4			8089			rs315122-G x rs884483-C	rs315122:rs884483	0	315122	intron	0	NR	1E-9	8.999999999999998		   2.05	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	5q12.1	5	62689026	NR	IPO11-LRRC70 - ISCA1P1	101180901	389293		       60.44	       86.35	rs1423386-G x rs6491679-G	rs1423386:rs6491679	0	1423386	Intergenic	1	NR	2E-9	8.698970004336019		   1.73	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	5q13.2	5	73776529	NR	ARHGEF28			64283			rs7714670-C x rs12880735-A	rs7714670:rs12880735	0	7714670	missense	0	NR	2E-9	8.698970004336019		   1.52	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	6p25.1	6	5071258	NR	LYRM4			57128			rs9392653-T x rs7780976-C	rs9392653:rs7780976	0	9392653	intron	0	NR	2E-9	8.698970004336019		   1.74	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	1p36.13	1	18098517	NR	ACTL8 - IGSF21	81569	84966		      271.45	        9.23	rs9804128-G x rs4784379-A	rs9804128:rs4784379	0	9804128	Intergenic	1	NR	2E-9	8.698970004336019		   1.71	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	7q32.3	7	132345252	NR	PLXNA4			91584			rs1364505-A x rs1204660-A	rs1364505:rs1204660	0	1364505	intron	0	NR	2E-9	8.698970004336019		   1.80	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	2p23.3	2	24190429	NR	FAM228A			653140			rs2288073-G x rs10771022-T	rs2288073:rs10771022	0	2288073	missense	0	NR	2E-9	8.698970004336019		   1.60	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	2p16.1	2	55885305	NR	EFEMP1			2202			rs1367228-A x rs3905075-T	rs1367228:rs3905075	0	1367228	intron	0	NR	2E-9	8.698970004336019		   1.49	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	1q43	1	239882608	NR	CHRM3			1131			rs536477-? x rs1937920-?	rs536477:rs1937920	0	536477	intron	0	NR	3E-9	8.522878745280337		   1.59	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	7q36.2	7	153227808	NR	LOC102723686			102723686			rs2710201-? x rs3780293-?	rs2710201:rs3780293	0	2710201	nearGene-5	0	NR	3E-9	8.522878745280337		   2.50	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	8p22	8	13121891	NR	DLC1			10395			rs12541254-A x rs305009-A	rs12541254:rs305009	0	12541254	intron	0	NR	3E-9	8.522878745280337		   1.65	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	1q25.2	1	176715296	NR	PAPPA2			60676			rs4507975-? x rs9914518-?	rs4507975:rs9914518	0	4507975	intron	0	NR	4E-9	8.397940008672036		   1.54	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	9q33.1	9	117525430	NR	SNORA70C - RPL35AP22	100124538	100271507		      344.23	      159.83	rs2771051-? x rs827637-?	rs2771051:rs827637	0	2771051	Intergenic	1	NR	4E-9	8.397940008672036		   1.49	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	5q35.1	5	171724227	NR	FGF18 - SMIM23	8817	644994		      266.60	       61.59	rs10516089-? x rs11072930-?	rs10516089:rs11072930	0	10516089	Intergenic	1	NR	4E-9	8.397940008672036		   1.59	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	8q11.23	8	51844533	NR	PCMTD1			115294			rs10504130-A x rs2847351-G	rs10504130:rs2847351	0	10504130	intron	0	NR	4E-9	8.397940008672036		   1.88	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	6p25.2	6	2912043	NR	SERPINB9 - SERPINB6	5272	5269		        8.73	       36.12	rs318497-? x rs7019259-?	rs318497:rs7019259	0	318497	Intergenic	1	NR	5E-9	8.301029995663981		   2.33	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	1p22.3	1	85066028	NR	WDR63			126820			rs6695223-C x rs1763510-T	rs6695223:rs1763510	0	6695223	intron	0	NR	5E-9	8.301029995663981		   1.86	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	13q33.1	13	102312653	NR	FGF14;FGF14-IT1			2259;283480			rs1336708-? x rs1423386-?	rs1336708:rs1423386	0	1336708	intron;intron	0	NR	5E-9	8.301029995663981		   1.72	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	3p13	3	72091381	NR	LINC00877			285286			rs6771316-A x rs10986432-C	rs6771316:rs10986432	0	6771316	intron	0	NR	5E-9	8.301029995663981		   2.13	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	3q21.3	3	127755187	NR	MGLL			11343			rs664910-G x rs877228-A	rs664910:rs877228	0	664910	intron	0	NR	7E-9	8.154901959985743		   1.50	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	18q22.3	18	74121441	NR	FBXO15			201456			rs9945428-? x rs4823535-?	rs9945428:rs4823535	0	9945428	intron	0	NR	7E-9	8.154901959985743		   1.61	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	5p14.2	5	23907464	NR	PRDM9 - CDH10	56979	1008		      378.87	      579.64	rs1910358-C x rs9981595-G	rs1910358:rs9981595	0	1910358	Intergenic	1	NR	7E-9	8.154901959985743		   2.03	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	3q26.31	3	175357320	NR	NAALADL2			254827			rs6771725-T x rs10507246-T	rs6771725:rs10507246	0	6771725	intron	0	NR	9E-9	8.045757490560675		   2.22	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	2p25.2	2	6892487	NR	RSAD2			91543			rs16865717-T x rs2009579-T	rs16865717:rs2009579	0	16865717	intron	0	NR	9E-9	8.045757490560675		   1.56	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	12q23.1	12	96423644	NR	CDK17 - C12orf55	5128	144535		       23.06	       65.93	rs2028385-G x rs2038227-C	rs2028385:rs2038227	0	2028385	Intergenic	1	NR	9E-9	8.045757490560675		   1.69	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	5q35.2	5	175547573	NR	SFXN1 - HRH2	94081	3274		       17.83	      110.27	rs10476160-? x rs1707420-?	rs10476160:rs1707420	0	10476160	Intergenic	1	NR	9E-9	8.045757490560675		   1.61	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	1q25.3	1	184099374	NR	TSEN15 - C1orf21	116461	81563		       25.16	      287.64	rs971572-? x rs10828151-?	rs971572:rs10828151	0	971572	Intergenic	1	NR	9E-9	8.045757490560675		   2.38	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	4q34.1	4	174894978	NR	GLRA3 - ADAM29	8001	11086		       65.66	       23.38	rs6858430-T x rs4800250-G	rs6858430:rs4800250	0	6858430	Intergenic	1	NR	1E-8	8		   1.62	[NR] 	Illumina [291,872]	N
08/06/2013	23509962	Greliche N	03/20/2013	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23509962	A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.	Venous thromboembolism (gene x gene interaction)	411 European ancestry cases, 1,228 European ancestry controls	1,542 European ancestry cases, 1,110 European ancestry controls	5q15	5	98633749	NR	CTBP2P4 - DDX18P4	642909	402222		       56.49	       45.55	rs467650-? x rs7153749-?	rs467650:rs7153749	0	467650	Intergenic	1	NR	1E-8	8		   1.49	[NR] 	Illumina [291,872]	N
06/26/2013	23508266	Duan QL	03/19/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23508266	A genome-wide association study of bronchodilator response in asthmatics.	Asthma (bronchodilator response)	Up to 403 European ancestry asthmatic children and their parents	764 European ancestry cases, 592 Costa Rican ancestry cases	10p15.1	10	4198678	PRKCQ,IL15RA,IL2RA,KLF6	MIR6078 - LINC00702	102464829	100652988		      207.42	        8.20	rs11252394-A	rs11252394	0	11252394	Intergenic	1	0.08	2E-7	6.698970004336019	(Additive Model)	NR	NR	Illumina [534,290]	N
06/26/2013	23508266	Duan QL	03/19/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23508266	A genome-wide association study of bronchodilator response in asthmatics.	Asthma (bronchodilator response)	Up to 403 European ancestry asthmatic children and their parents	764 European ancestry cases, 592 Costa Rican ancestry cases	8q24.23	8	138872266	COL22A1	COL22A1			169044			rs6988229-T	rs6988229	0	6988229	intron	0	0.20	9E-6	5.045757490560675	(Recessive Model)	NR	NR	Illumina [534,290]	N
07/26/2013	23512250	Xu H	03/19/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23512250	Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations.	Acute lymphoblastic leukemia (childhood)	972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls	574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls	7p12.2	7	50405553	IKZF1,DDC,GRB10	IKZF1			10320			rs6964969-C	rs6964969	0	6964969	nearGene-3	0	0.28	2E-29	28.69897000433602		   1.67	[1.53-1.83] 	Affymetrix [709,059]	N
07/26/2013	23512250	Xu H	03/19/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23512250	Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations.	Acute lymphoblastic leukemia (childhood)	972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls	574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls	10q21.2	10	61963818	ARID5B	ARID5B			84159			rs10821936-C	rs10821936	0	10821936	intron	0	0.33	6E-46	45.22184874961636		   1.86	[1.71-2.03] 	Affymetrix [709,059]	N
07/26/2013	23512250	Xu H	03/19/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23512250	Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations.	Acute lymphoblastic leukemia (childhood)	972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls	574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls	14q11.2	14	23116124	CEBPE	C14orf119 - CEBPE	55017	1053		       15.67	        1.18	rs4982731-C	rs4982731	0	4982731	Intergenic	1	0.28	9E-12	11.04575749056067		   1.36	[1.24-1.48] 	Affymetrix [709,059]	N
06/20/2013	23496005	Luca G	03/18/2013	J Sleep Res	http://www.ncbi.nlm.nih.gov/pubmed/23496005	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	19q12	19	31667558	NR	RNA5SP471 - CTC-360P9.3	100873714	100996665		       12.10	      358.30	rs16966122-?	rs16966122	0	16966122	Intergenic	1	NR	2E-6	5.698970004336018	(ESS)	   1.60	[NR] unit decrease	NR	N
06/20/2013	23496005	Luca G	03/18/2013	J Sleep Res	http://www.ncbi.nlm.nih.gov/pubmed/23496005	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	8q12.1	8	58411603	UBXN2B	UBXN2B			137886			rs2859998-?	rs2859998	0	2859998	intron	0	NR	1E-7	7	(Age EDS onset)	   4.41	[NR] unit decrease	NR	N
06/20/2013	23496005	Luca G	03/18/2013	J Sleep Res	http://www.ncbi.nlm.nih.gov/pubmed/23496005	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	12p13.33	12	3055757	TEAD4	TEAD4 - RPL13AP24	7004	100271603		       15.08	       15.79	rs12425451-?	rs12425451	0	12425451	Intergenic	1	NR	2E-7	6.698970004336019	(Age cataplexy onset)	   6.79	[NR] unit decrease	NR	N
06/20/2013	23496005	Luca G	03/18/2013	J Sleep Res	http://www.ncbi.nlm.nih.gov/pubmed/23496005	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	20q13.13	20	48763274	NR	PREX1			57580			rs2426087-?	rs2426087	0	2426087	intron	0	NR	2E-6	5.698970004336018	(SE)	  10.46	[NR] unit increase	NR	N
07/01/2013	23508960	Zhou G	03/18/2013	J Biol Chem	http://www.ncbi.nlm.nih.gov/pubmed/23508960	Aspirin hydrolysis in plasma is a variable function of butyrylcholinesterase and platelet-activating factor acetylhydrolase 1b2 (PAFAH1b2).	Aspirin hydrolysis (plasma)	2,054 European ancestry individuals		3q26.1	3	165762312	BCHE	SLITRK3 - BCHE	22865	590		      565.63	       10.59	rs6445035-A	rs6445035	0	6445035	Intergenic	1	NR	9E-17	16.04575749056067		NR	NR	Affymetrix [2,421,779] (Imputed)	N
06/21/2013	23502781	Germain M	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502781	Genome-wide association analysis identifies a susceptibility locus for pulmonary arterial hypertension.	Pulmonary arterial hypertension (without BMPR2 mutations)	340 European ancestry cases, 1,068 European ancestry controls	285 cases, 457 controls	18q22.3	18	72483704	CBLN2	GTSCR1 - CBLN2	220158	147381		     1832.85	       52.98	rs2217560-G	rs2217560	0	2217560	Intergenic	1	0.069	7E-10	9.154901959985741		   1.97	[1.59-2.45] 	Illumina [462,499] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		11q13.3	11	69648142	CCND1	CCND1			595			rs603965-G	rs603965	1	9344	cds-synon	0	0.56	8E-11	10.09691001300805	(t11;14 vs. controls)	   1.82	[1.52-2.19] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		10q24.1	10	96880089	NR	LCOR			84458			rs17112190-A	rs17112190	0	17112190	intron	0	0.11	9E-7	6.045757490560675	(t11;14 vs. controls)	   1.80	[1.42-2.27] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		16q23.3	16	82753448	NR	CDH13			1012			rs8056064-G	rs8056064	0	8056064	intron	0	0.15	2E-6	5.698970004336018	(t11;14 vs. controls)	   1.68	[1.36-2.08] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		2p23.3	2	25410373	NR	DTNB			1838			rs10180663-A	rs10180663	0	10180663	intron	0	0.69	2E-6	5.698970004336018	(t11;14 vs. controls)	   1.64	[1.34-2.02] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		13q14.2	13	48892795	NR	PSME2P2 - FNDC3A	338099	22862		      120.93	       83.12	rs1449572-A	rs1449572	0	1449572	Intergenic	1	0.14	8E-6	5.096910013008055	(t4;14 vs. controls)	   1.73	[1.36-2.21] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		14q22.3	14	57140349	NR	RPL3P3 - EXOC5	645798	10640		      160.67	       62.13	rs7144018-G	rs7144018	0	7144018	Intergenic	1	0.1	9E-6	5.045757490560675	(t4;14 vs. controls)	   1.85	[1.41-2.44] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3q13.33	3	121435346	NR	POLQ			10721			rs6800901-A	rs6800901	0	6800901	intron	0	0.34	2E-6	5.698970004336018	(Any IgH translocation vs. controls)	   1.31	[1.17-1.47] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3q26.2	3	169759718	NR	SDHDP3 - TERC	29771	7012		       49.14	        4.89	rs12638862-A	rs12638862	0	12638862	Intergenic	1	0.74	2E-6	5.698970004336018	(Any IgH translocation vs. controls)	   1.37	[1.20-1.56] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8q12.1	8	59633105	NR	NUDT15P1 - CA8	574532	767		       75.18	      555.76	rs4737547-G	rs4737547	0	4737547	Intergenic	1	0.42	3E-6	5.522878745280337	(Any IgH translocation vs. controls)	   1.30	[1.17-1.45] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		1q21.3	1	153668351	NR	ILF2			3608			rs7536700-A	rs7536700	0	7536700	intron	0	0.07	4E-6	5.397940008672037	(Any IgH translocation vs. controls)	   1.53	[1.28-1.84] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		2p23.3	2	25390277	NR	DTNB			1838			rs7577599-A	rs7577599	0	7577599	intron	0	0.81	6E-6	5.221848749616356	(Any IgH translocation vs. controls)	   1.43	[1.22-1.67] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		15q13.1	15	28243742	NR	HERC2			8924			rs8028689-G	rs8028689	0	8028689	intron	0	0.05	7E-6	5.154901959985742	(Any IgH translocation vs. controls)	   1.65	[1.33-2.05] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		4q34.1	4	173734763	NR	LOC101928478			101928478			rs4521323-C	rs4521323	0	4521323	intron	0	0.56	9E-6	5.045757490560675	(Any IgH translocation vs. controls)	   1.28	[1.15-1.43] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		4q34.3	4	180047278	NR	RNA5SP173 - LINC00290	100873437	728081		     1640.45	     1016.81	rs1994816-A	rs1994816	0	1994816	Intergenic	1	0.14	5E-7	6.30102999566398	(non t11;14 and t4;14 IgH translocations vs. controls)	   1.76	[1.41-2.20] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		10q22.1	10	71007652	NR	PCBD1 - UNC5B	5092	219699		      118.87	      204.88	rs10509328-G	rs10509328	0	10509328	Intergenic	1	0.09	1E-6	5.999999999999999	(non t11;14 and t4;14 IgH translocations vs. controls)	   1.86	[1.45-2.39] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		18q22.1	18	67284976	NR	RPL31P9 - DSEL	619464	92126		      147.22	      221.61	rs8099213-A	rs8099213	0	8099213	Intergenic	1	0.35	5E-6	5.301029995663981	(non t11;14 and t4;14 IgH translocations vs. controls)	   1.52	[1.27-1.81] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		6q23.2	6	131242437	NR	AKAP7			9465			rs4629710-A	rs4629710	0	4629710	intron	0	0.2	6E-6	5.221848749616356	(non t11;14 and t4;14 IgH translocations vs. controls)	   1.60	[1.31-1.96] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		10p15.1	10	4634004	NR	LINC00703 - LINC00704	100507059	100216001		      223.39	       16.18	rs7086888-G	rs7086888	0	7086888	Intergenic	1	0.07	8E-6	5.096910013008055	(non t11;14 and t4;14 IgH translocations vs. controls)	   1.87	[1.42-2.46] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		22q13.1	22	39123191	NR	COX5BP7 - CBX7	1336	23492		        2.52	        7.58	rs139371-G	rs139371	0	139371	Intergenic	1	0.46	9E-6	5.045757490560675	(non t11;14 and t4;14 IgH translocations vs. controls)	   1.50	[1.26-1.80] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		1q21.3	1	153668351	NR	ILF2			3608			rs7536700-A	rs7536700	0	7536700	intron	0	0.07	9E-6	5.045757490560675	(non t11;14 and t4;14 IgH translocations vs. controls)	   1.86	[1.42-2.46] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		11q13.3	11	69648142	CCND1	CCND1			595			rs603965-G	rs603965	1	9344	cds-synon	0	0.55	2E-11	10.69897000433602	(t11;14 vs non t11;14)	   1.95	[1.61-2.38] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		5p14.3	5	22812155	NR	CDH12			1010			rs780179-G	rs780179	0	780179	intron	0	0.48	9E-7	6.045757490560675	(t11;14 vs non t11;14)	   1.59	[1.32-1.92] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		16q24.3	16	89404838	NR	ANKRD11			29123			rs2086824-A	rs2086824	0	2086824	intron	0	0.51	2E-6	5.698970004336018	(t11;14 vs non t11;14)	   1.58	[1.31-1.91] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		2q31.1	2	173640196	NR	CDCA7 - RPL5P7	83879	344178		      271.21	      231.38	rs13028485-A	rs13028485	0	13028485	Intergenic	1	0.06	2E-6	5.698970004336018	(t11;14 vs non t11;14)	   2.17	[1.57-2.99] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		16q24.3	16	89382255	NR	ANKRD11			29123			rs3096299-G	rs3096299	0	3096299	intron	0	0.45	4E-6	5.397940008672037	(t11;14 vs non t11;14)	   1.54	[1.28-1.86] 	Illumina [414,804] (Imputed)	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		11q13.3	11	69642525	NR	CCND1			595			rs1352075-A	rs1352075	0	1352075	intron	0	0.44	2E-6	5.698970004336018	(HD vs. non-HD)	   1.42	[1.23-1.64] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		5q35.2	5	174350517	NR	HMP19 - GAPDHP71	51617	2613		      241.34	      162.72	rs12659144-G	rs12659144	0	12659144	Intergenic	1	0.12	3E-6	5.522878745280337	(HD vs. non-HD)	   1.67	[1.35-2.07] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3q26.2	3	169198452	NR	MECOM			2122			rs9864370-G	rs9864370	0	9864370	intron	0	0.05	9E-6	5.045757490560675	(HD vs. non-HD)	   2.04	[1.49-2.80] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		11p14.3	11	21875334	NR	RNA5SP337 - ANO5	100873600	203859		      491.43	      317.33	rs11026318-A	rs11026318	0	11026318	Intergenic	1	0.07	9E-6	5.045757490560675	(Non-HD without IgH translocations vs. controls)	   2.33	[1.60-3.38] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3p22.1	3	41744517	NR	ULK4			54986			rs6599175-G	rs6599175	0	6599175	intron	0	0.16	1E-9	8.999999999999998	(HD vs. controls)	   1.48	[1.30-1.68] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		7p15.3	7	21898622	NR	DNAH11			8701			rs4487645-C	rs4487645	0	4487645	intron	0	0.65	1E-9	8.999999999999998	(HD vs. controls)	   1.43	[1.27-1.60] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		22q13.1	22	39123191	NR	COX5BP7 - CBX7	1336	23492		        2.52	        7.58	rs139371-A	rs139371	0	139371	Intergenic	1	0.46	2E-9	8.698970004336019	(HD vs. controls)	   1.37	[1.24-1.52] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		1p32.3	1	53909897	NR	DIO1			1733			rs2235544-A	rs2235544	0	2235544	intron	0	0.46	6E-7	6.221848749616355	(HD vs. controls)	   1.30	[1.17-1.44] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		17q21.1	17	40023239	NR	MED24			9862			rs2302777-A	rs2302777	0	2302777	cds-synon	0	0.62	8E-7	6.096910013008056	(HD vs. controls)	   1.31	[1.18-1.46] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8p23.1	8	9935152	NR	MIR124-1 - MSRA	406907	4482		       31.68	      119.17	rs2055729-G	rs2055729	0	2055729	Intergenic	1	0.33	8E-7	6.096910013008056	(HD vs. controls)	   1.30	[1.17-1.45] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		14q21.1	14	42934256	NR	YWHAQP1 - TUBBP3	319121	326106		      126.24	      340.71	rs11157317-A	rs11157317	0	11157317	Intergenic	1	0.25	9E-6	5.045757490560675	(HD vs. controls)	   1.29	[1.15-1.44] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3p22.1	3	41954644	NR	ULK4			54986			rs2272007-A	rs2272007	0	2272007	missense	0	0.16	2E-9	8.698970004336019	(HD vs. controls)	   1.47	[1.30-1.67] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8p23.1	8	9744189	NR	TNKS			8658			rs12545912-C	rs12545912	0	12545912	intron	0	0.24	7E-6	5.154901959985742	(HD vs. controls)	   1.30	[1.16-1.45] 	Illumina [414,804] 	N
08/02/2013	23502783	Weinhold N	03/17/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23502783	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		8p23.1	8	9538022	NR	PPP1R3B - TNKS	79660	8658		      386.38	       17.23	rs6601327-G	rs6601327	0	6601327	Intergenic	1	0.37	8E-6	5.096910013008055	(HD vs. controls)	   1.27	[1.14-1.41] 	Illumina [414,804] 	N
08/02/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	15q21.3	15	58431227	LIPC	LIPC;LOC102724766			3990;102724766			rs1077835-A	rs1077835	0	1077835	intron;intron	0	0.38	2E-14	13.69897000433602		    .17	[0.13-0.21] unit decrease	Illumina [1,361,436] (Imputed)	N
08/02/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	16q13	16	56971567	SLC12A3,NLRC5,HERPUD1,CETP	CETP			1071			rs1532624-A	rs1532624	0	1532624	intron	0	0.43	1E-24	24		    .23	[0.19-0.27] unit increase	Illumina [1,361,436] (Imputed)	N
08/02/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	19p13.2	19	11239812	TSPAN16,SPC24,RAB3D,LOC55908,KANK2,DOCK6	C19orf80;DOCK6			55908;57572			rs2278426-?	rs2278426	0	2278426	missense;intron	0	0.3	3E-9	8.522878745280337		    .14	[0.1-0.18] unit decrease	Illumina [1,361,436] (Imputed)	N
08/02/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	8p23.1	8	9327636	PPP1R3B	LOC157273			157273			rs2126259-A	rs2126259	0	2126259	intron	0	0.39	1E-6	5.999999999999999		    .11	[0.071-0.149] unit decrease	Illumina [1,361,436] (Imputed)	N
08/02/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	9q31.1	9	104858554	NIPSNAP3A,NIPSNAP3B,ABCA1	ABCA1			19			rs9282541-A	rs9282541	0	9282541	missense	0	0.11	6E-26	25.22184874961635		    .37	[0.29-0.45] unit decrease	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	11q23.3	11	116778201	ZNF259,KIAA0999,BUD13,APOC3,APOA5,APOA4,APOA1	ZPR1			8882			rs964184-?	rs964184	0	964184	intron	0	0.30	5E-35	34.30102999566398		   1.77	[1.67-1.87] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	2p23.3	2	27508073	ZNF512,PPM1G,NRBP1,KRTCAP3,IFT172,GCKR,FNDC4,C2orf16	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	0.26	2E-13	12.69897000433602		   1.41	[1.31-1.51] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	8p21.3	8	20071071	SLC18A1,LPL,INTS10	LPL - RPL30P9	4023	100270981		      103.81	       42.27	rs9644568-?	rs9644568	0	9644568	Intergenic	1	0.93	4E-11	10.39794000867204		   2.00	[1.80-2.20] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	18q11.2	18	23299253	CABLES1,C18orf45	TMEM241			85019			rs9949617-?	rs9949617	0	9949617	intron	0	0.53	2E-8	7.698970004336018		   1.28	[1.18-1.38] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	7q11.23	7	73573024	VPS37D,TBL2,MLXIPL,BCL7B,BAZ1B	TBL2			26608			rs2286276-?	rs2286276	0	2286276	intron	0	0.88	2E-6	5.698970004336018		   1.39	[1.25-1.53] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	5q33.3	5	157037231	TIMD4,HAVCR1,HAVCR2	HAVCR1			26762			rs2036402-?	rs2036402	0	2036402	intron	0	0.45	3E-6	5.522878745280337		   1.23	[1.15-1.31] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	15q13.3	15	30923732	TRPM1,MTMR15,MTMR10	FAN1			22909			rs7178375-?	rs7178375	0	7178375	intron	0	0.73	6E-6	5.221848749616356		   1.27	[1.17-1.37] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	8p21.3	8	22230919	SFTPC,REEP4,POLR3D,PIWIL2,PHYHIP,LGI3,BMP1	PHYHIP			9796			rs12541335-G	rs12541335	0	12541335	intron	0	0.66	7E-6	5.154901959985742		   1.23	[1.13-1.33] 	Illumina [1,361,436] (Imputed)	N
08/01/2013	23505323	Weissglas-Volkov D	03/15/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23505323	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	11q23.3	11	116072535	Intergenic	RPL15P15 - BUD13	100128347	84811		      121.73	      675.64	rs1426391-?	rs1426391	0	1426391	Intergenic	1	.7	7E-6	5.154901959985742		   1.25	[1.15-1.35] 	Illumina [1,361,436] (Imputed)	N
07/01/2013	23493294	Gao X	03/14/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23493294	A genome-wide association study of central corneal thickness in Latinos.	Central corneal thickness	1,644 Latino individuals	124 Latino individuals	9q34.3	9	134544468	LOC100506532,RXRA,COL5A1	LOC100506532			100506532			rs3118515-A	rs3118515	0	3118515	intron	0	0.262	8E-10	9.096910013008054		    .23	[NR] unit decrease	Illumina [6,290,547] imputed	N
07/01/2013	23493294	Gao X	03/14/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23493294	A genome-wide association study of central corneal thickness in Latinos.	Central corneal thickness	1,644 Latino individuals	124 Latino individuals	9q34.3	9	134548682	RXRA, COL5A1	MIR4669 - COL5A1	100616236	1289		      169.21	       93.12	rs1536482-G	rs1536482	0	1536482	Intergenic	1	0.73	6E-8	7.221848749616355		    .22	 unit decrease	Illumina [6,290,547] imputed	N
06/18/2013	23561647	van Setten J	03/13/2013	Atherosclerosis	http://www.ncbi.nlm.nih.gov/pubmed/23561647	Genome-wide association study of coronary and aortic calcification implicates risk loci for coronary artery disease and myocardial infarction.	Coronary artery calcification	2,620 European ancestry males		9p21.3	9	22084311	CDKN2A,CDKN2B	CDKN2B-AS1			100048912			rs1537370-T	rs1537370	0	1537370	intron	0	0.46	2E-11	10.69897000433602		    .53	[0.38-0.69] unit increase	Illumina [2.5 Million] (Imputed)	N
06/18/2013	23561647	van Setten J	03/13/2013	Atherosclerosis	http://www.ncbi.nlm.nih.gov/pubmed/23561647	Genome-wide association study of coronary and aortic calcification implicates risk loci for coronary artery disease and myocardial infarction.	Coronary artery calcification	2,620 European ancestry males		15q25.1	15	78796769	ADAMTS7	ADAMTS7			11173			rs3825807-A	rs3825807	0	3825807	missense	0	0.57	7E-6	5.154901959985742		    .36	[0.21-0.52] unit increase	Illumina [2.5 Million] (Imputed)	N
07/01/2013	23482656	Chen D	03/12/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23482656	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.33	6	31422633	MICA	TRNAI25			100189401			rs2516448-?	rs2516448	0	2516448		0	NR	4E-18	17.39794000867204		   1.42	[1.31-1.54] 	Illumina [632,668]	N
07/01/2013	23482656	Chen D	03/12/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23482656	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	6	32633026	HLA-DRB1, HLA-DQA1	TRNAI25			100189401			rs9272143-?	rs9272143	0	9272143		0	NR	3E-22	21.52287874528033		   1.49	[1.37-1.61] 	Illumina [632,668]	N
07/01/2013	23482656	Chen D	03/12/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23482656	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	6p21.32	6	33121846	HLA-DPB2	TRNAI25			100189401			rs3117027-?	rs3117027	0	3117027		0	NR	1E-7	7		   1.25	[1.15-1.36] 	Illumina [632,668]	N
07/01/2013	23482656	Chen D	03/12/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23482656	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	NR			HLA-B	 - 						HLA-B*0702-?	HLA-B*0702					0.14	8E-8			   1.42	[1.25-1.61] 	Illumina [632,668]	N
07/01/2013	23482656	Chen D	03/12/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23482656	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	NR			HLA	 - 						DRB1*1301-DQA1*0103-DQB1*0603-?	DRB1*1301-DQA1*0103-DQB1*0603					NR	9E-10			   2.13	[1.67-2.70] 	Illumina [632,668]	N
07/01/2013	23482656	Chen D	03/12/2013	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/23482656	Genome-wide association study of susceptibility loci for cervical cancer.	Cervical cancer	1,034 European ancestry cases, 3,948 European ancestry controls	1,140 European ancestry cases, 1,058 European ancestry controls	NR			HLA	 - 						DRB1*1501-DQB1*0602-?	DRB1*1501-DQB1*0602					0.15	4E-7			   1.39	[1.23-1.58] 	Illumina [632,668]	N
07/01/2013	23478653	Han JY	03/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23478653	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NR	1p31.3	1	67639770	Intergenic	SERBP1 - HNRNPCP9	26135	100130196		      209.33	        2.94	rs344924-?	rs344924	0	344924	Intergenic	1	NR	3E-7	6.522878745280337	(Recessive model)	   4.90	[2.70-9.0] 	Affymetrix [334,127]	N
07/01/2013	23478653	Han JY	03/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23478653	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NR	2p24.1	2	19429543	Intergenic	OSR1 - CISD1P1	130497	130500		       70.93	      396.67	rs13398721-?	rs13398721	0	13398721	Intergenic	1	NR	2E-7	6.698970004336019	(Recessive model)	   7.10	[3.40-14.70] 	Affymetrix [334,127]	N
07/01/2013	23478653	Han JY	03/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23478653	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NR	6q22.1	6	117450114	DCBLD1	RAP1BP3 - DCBLD1	100132917	285761		       18.06	       32.53	rs17635492-?	rs17635492	0	17635492	Intergenic	1	NR	4E-7	6.397940008672037	(Dominant model)	   7.60	[3.50-16.70] 	Affymetrix [334,127]	N
07/01/2013	23478653	Han JY	03/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23478653	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NR	7p14.3	7	28974579	Intergenic	TRIL - CPVL	9865	54504		       16.17	       21.05	rs2018683-T	rs2018683	0	2018683	Intergenic	1	NR	8E-7	6.096910013008056	(Recessive model)	   7.80	[3.4-17.7] 	Affymetrix [334,127]	N
07/01/2013	23478653	Han JY	03/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23478653	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NR	13q32.1	13	95123178	ABCC4	ABCC4			10257			rs16950650-T	rs16950650	0	16950650	intron	0	NR	2E-7	6.698970004336019	(Dominant model)	  30.20	[8.4-109.0] 	Affymetrix [334,127]	N
07/01/2013	23478653	Han JY	03/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23478653	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NR	14q32.13	14	95476110	C14orf49	SYNE3			161176			rs11622887-?	rs11622887	0	11622887	intron	0	NR	3E-7	6.522878745280337	(Recessive model)	   3.50	[2.20-5.60] 	Affymetrix [334,127]	N
07/01/2013	23478653	Han JY	03/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23478653	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NR	16p12.3	16	16864058	Intergenic	NPIPA7 - XYLT1	101059938	64131		      470.09	      238.27	rs7186128-G	rs7186128	0	7186128	Intergenic	1	NR	4E-7	6.397940008672037	(Additive model)	   2.50	[1.70-3.50] 	Affymetrix [334,127]	N
06/18/2013	23536807	Scheetz TE	03/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23536807	A genome-wide association study for primary open angle glaucoma and macular degeneration reveals novel Loci.	Age-related macular degeneration	200 Other ancestry cases, 197 Other ancestry controls	200 Other ancestry cases, 200 Other ancestry controls	NR			KCNT2, CFH, CFHR3, CFHR1P, CFHR4, CFHR2, CFHR5, F13B, ASPM, ZBTB41	 - 						SNP_A-2171106-?	SNP_A-2171106					0.39	1E-16			   3.75	[2.91-4.82] 	Affymetrix [500,000]	N
06/18/2013	23536807	Scheetz TE	03/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23536807	A genome-wide association study for primary open angle glaucoma and macular degeneration reveals novel Loci.	Age-related macular degeneration	200 Other ancestry cases, 197 Other ancestry controls	200 Other ancestry cases, 200 Other ancestry controls	NR			PLEKHA1, ARMS2, HTRA1	 - 						SNP_A-1841655-?	SNP_A-1841655					0.20	1E-16			   3.14	[2.49-3.97] 	Affymetrix [500,000]	N
06/16/2013	23474815	Stambolian D	03/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23474815	Meta-analysis of genome-wide association studies in five cohorts reveals common variants in RBFOX1, a regulator of tissue-specific splicing, associated with refractive error.	Refractive error	6,597 European ancestry individuals, 683 Sardinian inidividuals	19,763 European ancestry individuals	16p13.3	16	7409346	RBFOX1	RBFOX1			54715			rs10500355-?	rs10500355	0	10500355	intron	0	.3721	4E-9	8.397940008672036		    .11	[0.074-0.147] unit decrease	Illumina & Affymetrix [2,093,862] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		6p25.3	6	577820	NR	EXOC2			55770			rs9504361-G	rs9504361	0	9504361	intron	0	0.4504	6E-6	5.221848749616356		   1.16	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		22q12.3	22	36803762	NR	PVALB			5816			rs2022068-A	rs2022068	0	2022068	intron	0	0.3926	7E-6	5.154901959985742		   1.18	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		Xp11.4	23	40026377	BCOR	RPS11P7 - BCOR	642687	54880		      160.44	       24.87	rs17145638-C	rs17145638	0	17145638	Intergenic	1	0.1169	2E-7	6.698970004336019		   2.33	[NR] unit decrease	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		7p14.1	7	41772310	INHBA,INHBA-AS1	INHBA-AS1			285954			rs10486722-C	rs10486722	0	10486722	intron	0	0.3349	7E-6	5.154901959985742		   1.22	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		3p14.2	3	60016099	NR	FHIT			2272			rs9311745-C	rs9311745	0	9311745	intron	0	0.0466	5E-6	5.301029995663981		   2.99	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		9q21.11	9	68856996	NR	PIP5K1B			8395			rs6560397-T	rs6560397	0	6560397	intron	0	0.4671	2E-7	6.698970004336019		   1.29	[NR] unit decrease	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		8q21.3	8	89198871	Intergenic	RNA5SP272 - RIPK2	100873525	8767		      802.32	      558.86	rs2046315-T	rs2046315	0	2046315	Intergenic	1	0.1322	7E-7	6.154901959985743		   1.87	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries 	996 European ancestry individuals		3q21.3	3	128563854	NR	TMED10P2 - C3orf27	100129727	23434		       25.22	        8.15	rs6806253-A	rs6806253	0	6806253	Intergenic	1	0.8295	6E-6	5.221848749616356		   1.56	[NR] unit decrease	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		4p15.32	4	16020917	NR	PROM1			8842			rs2677780-A	rs2677780	0	2677780	intron	0	0.9356	2E-6	5.698970004336018		   6.35	[NR] unit decrease	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		20q13.11	20	43362961	NR	PPIAP21 - EIF4EBP2P1	170536	170510		      131.50	       59.95	rs2010809-C	rs2010809	0	2010809	Intergenic	1	0.9883	2E-6	5.698970004336018		  14.07	[NR] unit decrease	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		11q14.1	11	81524108	NR	ARL6IP1P3 - MIR4300	729790	100422823		      870.12	      366.63	rs2032381-G	rs2032381	0	2032381	Intergenic	1	0.9212	4E-6	5.397940008672037		   5.69	[NR] unit decrease	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		8q21.3	8	89198871	Intergenic	RNA5SP272 - RIPK2	100873525	8767		      802.32	      558.86	rs2046315-T	rs2046315	0	2046315	Intergenic	1	0.1322	8E-8	7.096910013008055		   5.19	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		9q22.33	9	99472041	NR	NAMA - NR4A3	100996569	8013		       96.78	      349.81	rs649057-T	rs649057	0	649057	Intergenic	1	0.05057	8E-6	5.096910013008055		   6.81	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		11q25	11	133251042	NR	OPCML			4978			rs2078454-A	rs2078454	0	2078454	intron	0	0.2094	6E-6	5.221848749616356		   3.60	[NR] unit decrease	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		4q31.22	4	145954399	NR	ZNF827 - LINC01095	152485	100505545		       15.94	      155.06	rs723794-G	rs723794	0	723794	Intergenic	1	0.2686	6E-7	6.221848749616355		   3.65	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		5q35.1	5	170813419	NR	GABRP			2568			rs11134654-A	rs11134654	0	11134654	UTR-3	0	0.1735	2E-7	6.698970004336019		   4.61	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		2q35	2	218265791	AAMP,CXCR1,CXCR2	AAMP			14			rs1079204-A	rs1079204	0	1079204	intron	0	0.0378	2E-6	5.698970004336018		   8.45	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		8q21.3	8	88981259	NR	RNA5SP272 - RIPK2	100873525	8767		      584.71	      776.47	rs10429371-C	rs10429371	0	10429371	Intergenic	1	.2142	3E-6	5.522878745280337		   3.80	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/21/2013	23470693	Zeng Z	03/07/2013	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23470693	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries 	982 European ancestry individuals		1q32.2	1	210724921	NR	KCNH1			3756			rs1934620-A	rs1934620	0	1934620	intron	0	.8656	8E-6	5.096910013008055		   4.25	[NR] unit increase	Illumina [1.2 Million] (Imputed)	N
06/28/2013	23467860	Pare G	03/06/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23467860	Genetic determinants of dabigatran plasma levels and their relation to bleeding.	Response to dabigatran etexilate treatment	1,490 European ancestry atrial fibrillation patients at risk of stroke	204 European ancestry atrial fibrillation patients at risk of stroke, 66 Latin American ancestry atrial fibrillation patients at risk of stroke, 1 Arab ancestry atrial fibrillation patient at risk of stroke, 5 Black African atrial fibrillation patients at risk of stroke, 21 Chinese ancestry atrial fibrillation patients at risk of stroke, 1 Colored African atrial fibrillation patient at risk of stroke, 4 Japanese ancestry atrial fibrillation patients at risk of stroke, 9 South Asian ancestry atrial fibrillation patients at risk of stroke, 15 other Asian ancestry atrial fibrillation patients at risk of stroke and 134 atrial fibrillation patients at risk of stroke	16q12.2	16	55810697	CES1	CES1			1066			rs2244613-?	rs2244613	0	2244613	intron	0	0.82	5E-7	6.30102999566398	(Trough concentrations)	   1.16	[1.10-1.22] 	Illumina [551,203]	N
06/28/2013	23467860	Pare G	03/06/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23467860	Genetic determinants of dabigatran plasma levels and their relation to bleeding.	Response to dabigatran etexilate treatment	1,490 European ancestry atrial fibrillation patients at risk of stroke	204 European ancestry atrial fibrillation patients at risk of stroke, 66 Latin American ancestry atrial fibrillation patients at risk of stroke, 1 Arab ancestry atrial fibrillation patient at risk of stroke, 5 Black African atrial fibrillation patients at risk of stroke, 21 Chinese ancestry atrial fibrillation patients at risk of stroke, 1 Colored African atrial fibrillation patient at risk of stroke, 4 Japanese ancestry atrial fibrillation patients at risk of stroke, 9 South Asian ancestry atrial fibrillation patients at risk of stroke, 15 other Asian ancestry atrial fibrillation patients at risk of stroke and 134 atrial fibrillation patients at risk of stroke	16q12.2	16	55827882	CES1	CES1			1066			rs8192935-?	rs8192935	0	8192935	intron	0	0.67	1E-6	5.999999999999999	(Peak concentrations)	   1.12	[1.08-1.18] 	Illumina [551,203]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	1p36.12	1	22123994	WNT4,LOC100289113,ZBTB40	WNT4			54361			rs2235529-A	rs2235529	0	2235529	intron	0	0.153	3E-9	8.522878745280337		   1.30	[1.19-1.41] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	2q23.3	2	150779318	RND3 , RBM43	RND3 - FABP5P10	390	344332		      291.62	      406.84	rs6757804-G	rs6757804	0	6757804	Intergenic	1	0.401	6E-8	7.221848749616355		   1.20	[1.13-1.29] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	6p22.3	6	19803537	RNF144B , ID4	LOC100506885			100506885			rs6907340-A	rs6907340	0	6907340	nearGene-3	0	0.371	2E-7	6.698970004336019		   1.20	[1.12-1.28] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	7p14.3	7	31864413	PDE1C	PDE1C			5137			rs2270221-A	rs2270221	0	2270221	intron	0	0.267	1E-6	5.999999999999999		   1.20	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	8p23.2	8	5213890	CSMD1, LOC100287015	RSL24D1P7 - RPL23AP54	100129861	100271466		      140.97	      262.62	rs7816936-A	rs7816936	0	7816936	Intergenic	1	0.446	6E-6	5.221848749616356		   1.16	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	9p24.1	9	6253571	IL33	IL33			90865			rs10975519-A	rs10975519	0	10975519	cds-synon	0	0.3	9E-7	6.045757490560675		   1.19	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	10q11.21	10	44046117	HNRNPA3P1, LOC100130539	LINC00841 - CXCL12	283033	6387		       76.21	      324.04	rs10508881-A	rs10508881	0	10508881	Intergenic	1	0.405	4E-7	6.397940008672037		   1.19	[1.11-1.27] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	10q25.1	10	107614626	SORCS1, LOC100128304	RNA5SP326 - MAPKAPK5P1	100873592	100533849		      152.96	     1233.58	rs11193561-A	rs11193561	0	11193561	Intergenic	1	0.239	6E-6	5.221848749616356		   1.19	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	12q22	12	95302644	VEZT	VEZT			55591			rs3596-G	rs3596	0	3596	ncRNA	0	0.472	2E-6	5.698970004336018		   1.17	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	12q24.23	12	117668389	KSR2	KSR2			283455			rs10431397-A	rs10431397	0	10431397	intron	0	0.012	7E-6	5.154901959985742		   1.73	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	14q32.12	14	93178034	ITPK1, MOAP1	CYB5AP3 - MOAP1	1531	64112		       39.26	        4.16	rs1268843-A	rs1268843	0	1268843	Intergenic	1	0.263	3E-6	5.522878745280337		   1.19	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	17p13.3	17	3126260	OR1D2, OR1G1	OR1G1			8390			rs12449465-G	rs12449465	0	12449465	nearGene-3	0	0.125	1E-6	5.999999999999999		   1.26	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	1p36.12[rs10917151]; 1p36.12[rs4654783]			WNT4	 - 						3-SNP Haplotype	rs10917151, rs4654783, rs2235529					0.152	7E-9		(Haplotype - ATT)	   1.28	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	1p36.12[rs10917151]; 1p36.12[rs4654783]			WNT4	 - 						3-SNP Haplotype	rs10917151, rs4654783, rs2235529					0.709	6E-6		(Haplotype - GCC)	   1.19	[NR] 	Illumina [580,699]	N
06/20/2013	23472165	Albertsen HM	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472165	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry casses, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	1p36.12[rs10917151]; 1p36.12[rs4654783]			WNT4	 - 						5-SNP Haplotype	rs10917151, rs4654783, rs2235529, rs16826658, rs7521902					0.134	8E-7		(Haplotype - ATTGA)	   1.25	[NR] 	Illumina [580,699]	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		10p13	10	12633062	CAMK1D	CAMK1D			57118			rs10906189-A	rs10906189	0	10906189	intron	0	0.58	6E-6	5.221848749616356	(Thiazides)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		9p22.1	9	18761101	ADAMTSL1	ADAMTSL1			92949			rs1978746-A	rs1978746	0	1978746	intron	0	0.79	8E-6	5.096910013008055	(Thiazides)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		16p13.3	16	3746146	CREBBP	CREBBP			1387			rs129963-T	rs129963	0	129963	intron	0	0.42	9E-6	5.045757490560675	(Thiazides)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		8p22	8	18376073	AACP	NATP - RPL10AP11	11	392206		        4.20	        7.17	rs7006687-T	rs7006687	0	7006687	Intergenic	1	0.57	2E-6	5.698970004336018	(Sulfonylurea Hypoglycemic agents)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		11q22.3	11	109002392	SKCG-1	CYCSP29 - RNA5SP349	360180	100873611		      179.74	      118.49	rs10890920-A	rs10890920	0	10890920	Intergenic	1	0.57	3E-6	5.522878745280337	(Sulfonylurea Hypoglycemic agents)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		20q13.13	20	51123323	RPSAP1	KCNG1 - RPSAP1	3755	170529		      100.19	        7.38	rs230014-A	rs230014	0	230014	Intergenic	1	0.48	4E-6	5.397940008672037	(Sulfonylurea Hypoglycemic agents)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		14q21.1	14	41233395	LRFN5	FBXO33 - LRFN5	254170	145581		     1800.90	      374.17	rs1612141-A	rs1612141	0	1612141	Intergenic	1	0.21	5E-6	5.301029995663981	(Sulfonylurea Hypoglycemic agents)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		1q42.11	1	224068646	FBX028	CICP5 - FBXO28	730978	23219		      119.19	       45.44	rs10916248-A	rs10916248	0	10916248	Intergenic	1	0.8	5E-6	5.301029995663981	(Sulfonylurea Hypoglycemic agents)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		15q25.1	15	81066796	LOC647020	MESDC1 - ANP32BP3	59274	100652899		       62.79	       50.46	rs2663905-A	rs2663905	0	2663905	Intergenic	1	0.75	5E-6	5.301029995663981	(UAZ Cert)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		6q22.1	6	117409656	ROS1	ROS1			6098			rs2273601-A	rs2273601	0	2273601	intron	0	0.23	8E-6	5.096910013008055	(UAZ Cert)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		18p11.21	18	11759433	GNAL	GNAL			2774			rs9947295-T	rs9947295	0	9947295	intron	0	0.11	8E-6	5.096910013008055	(UAZ Cert)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		7q11.21	7	63886508	GABPAP	MIR4283-2 - GABPAP	100422848	8327		      265.34	        6.74	rs13437751-T	rs13437751	0	13437751	Intergenic	1	0.09	9E-6	5.045757490560675	(UAZ Cert)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		2q33.3	2	206853059	FASTKD2	MIR3130-2 - CPO	100423002	130749		       69.75	       86.50	rs6755560-T	rs6755560	0	6755560	Intergenic	1	0.32	2E-6	5.698970004336018	(Tri-Tetra/cyclic antidepressants)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		1p21.2	1	101075443	DPH5	LOC102606465			102606465			rs17450029-T	rs17450029	0	17450029	ncRNA	0	0.23	3E-6	5.522878745280337	(Tri-Tetra/cyclic antidepressants)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		12p13.32	12	4290804	CCND2	CCND2			894			rs3217869-A	rs3217869	0	3217869	intron	0	0.41	4E-6	5.397940008672037	(Tri-Tetra/cyclic antidepressants)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		7q35	7	147880445	CNTNAP2	CNTNAP2			26047			rs2708240-A	rs2708240	0	2708240	intron	0	0.51	4E-6	5.397940008672037	(Tri-Tetra/cyclic antidepressants)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/14/2013	23459443	Avery CL	03/05/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23459443	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (interaction)	33,781 Euroepan ancestry individuals		6q16.1	6	98140878	POU3F2	MIR2113 - EIF4EBP2P3	100302164	100190924		      116.26	       37.78	rs9375225-T	rs9375225	0	9375225	Intergenic	1	0.48	6E-6	5.221848749616356	(Tri-Tetra/cyclic antidepressants)	NR	NR	Illumina & Affymetrix [~2.5 Million] (imputed)	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		20p12.1	20	16074337	MACROD2	ENSAP1 - PPIAP17	170511	170540		      454.42	      149.41	rs16997087-?	rs16997087	0	16997087	Intergenic	1	NR	1E-10	10	(Strength - R paracentral)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		15q21.3	15	55918731	NEDD4	NEDD4			4734			rs17819300-?	rs17819300	0	17819300	intron	0	NR	1E-10	10	(Strength - R-banks of the superior temporal sulcus)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		Xq24	23	119583024	UBE2A	UBE2A			7319			rs7879933-?	rs7879933	0	7879933	intron	0	NR	2E-10	9.698970004336017	(strength - R-inferior parietal)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		10q22.1	10	70354622	LRRC20	LRRC20			55222			rs4747011-?	rs4747011	0	4747011	intron	0	NR	9E-10	9.045757490560675	(Strength - L-transverse temporal)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		6q16.1	6	94446700	Intergenic	TSG1 - CYCSP17	643432	360172		      670.22	     1057.48	rs2224003-?	rs2224003	0	2224003	Intergenic	1	NR	1E-9	8.999999999999998	(Strength - R-pars opercularis)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		3p26.2	3	3013563	CNTN4	CNTN4			152330			rs17024684-?	rs17024684	0	17024684	intron	0	NR	2E-9	8.698970004336019	(Clustering coefficient - L-isthmus of the cingulate)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		20p12.1	20	16074337	MACROD2	ENSAP1 - PPIAP17	170511	170540		      454.42	      149.41	rs16997087-?	rs16997087	0	16997087	Intergenic	1	NR	2E-9	8.698970004336019	(Efficiency - R-paracentral)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		3p11.2	3	87446400	Intergenic	KRT8P25 - APOOP2	402134	100129005		      121.49	      148.41	rs9834692-?	rs9834692	0	9834692	Intergenic	1	NR	3E-9	8.522878745280337	(Clustering coefficient - R-insula)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		3p11.2	3	87476299	Intergenic	KRT8P25 - APOOP2	402134	100129005		      151.39	      118.51	rs9883474-?	rs9883474	0	9883474	Intergenic	1	NR	3E-9	8.522878745280337	(Clustering coefficient - R-insula)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		2p12	2	75192588	TACR1	TACR1			6869			rs3771863-?	rs3771863	0	3771863	intron	0	NR	3E-9	8.522878745280337	(Strength - L-inferior parietal)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		6q16.1	6	94446736	Intergenic	TSG1 - CYCSP17	643432	360172		      670.26	     1057.45	rs10485022-?	rs10485022	0	10485022	Intergenic	1	NR	5E-9	8.301029995663981	(Strength - R-pars opercularis)	NR	NR	Illumina [428,287]	N
06/18/2013	23471985	Jahanshad N	03/05/2013	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23471985	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		11p15.2	11	14000092	SPON1	SPON1			10418			rs2618516-T	rs2618516	0	2618516	intron	0	0.36	6E-10	9.221848749616356	(connectivity pattern)	    .00	[NR] unit increase	Illumina [428,287]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	3q23	3	140380851	CLSTN2	CLSTN2			64084			rs17411949-?	rs17411949	0	17411949	intron	0	NR	8E-7	6.096910013008056		   1.85	[1.45-2.37] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	6	32400310	BTNL2	BTNL2			56244			rs3817963-?	rs3817963	0	3817963	intron	0	NR	6E-10	9.221848749616356		   1.61	[1.38-1.87] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	6p21.32	6	32438565	HLA-DRA	HLA-DRA			3122			rs3129871-?	rs3129871	0	3129871	nearGene-5	0	NR	6E-15	14.22184874961635		   1.72	[1.59-1.86] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		1q23.2	1	159848723	C10ORF204	C1orf204			284677			rs6659742-?	rs6659742	0	6659742	intron	0	NR	7E-7	6.154901959985743	(OCB negative vs. controls)	   1.99	[1.52-2.61] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		2q31.2	2	178431544	PRKRA	PRKRA;LOC101927027			8575;101927027			rs9283487-?	rs9283487	0	9283487	UTR-3;intron	0	NR	3E-7	6.522878745280337	(OCB positive vs. controls)	   1.61	[1.33-1.92] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		6p21.32	6	32400310	BTNL2	BTNL2			56244			rs3817963-?	rs3817963	0	3817963	intron	0	NR	8E-6	5.096910013008055	(OCB positive vs. controls)	   1.52	[1.27-1.79] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		6p21.32	6	32438565	HLA-DRA	HLA-DRA			3122			rs3129871-?	rs3129871	0	3129871	nearGene-5	0	NR	1E-16	16	(OCB positive vs. controls)	   1.98	[1.68-2.32] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		6p21.32	6	32553130	HLA-DRB1	HLA-DRB6			3126;3128			rs3828840-?	rs3828840	0	3828840	intron;intron	0	NR	5E-15	14.30102999566398	(OCB positive vs. controls)	   1.94	[1.64-2.29] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		6p21.32	6	32624423	HLA-DQA1	TRNAI25			100189401			rs9271640-?	rs9271640	0	9271640		0	NR	2E-20	19.69897000433602	(OCB positive vs. controls)	   2.37	[1.97-2.84] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		6p21.32	6	32695854	HLA-DQB1	TRNAI25			100189401			rs3129720-?	rs3129720	0	3129720		0	NR	5E-15	14.30102999566398	(OCB positive vs. controls)	   1.91	[1.62-2.24] 	Illumina [495,970]	N
06/13/2013	23472185	Mero IL	03/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23472185	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls		6p21.32	6	32710135	HLA-DQA2	TRNAI25			100189401			rs9275563-?	rs9275563	0	9275563		0	NR	6E-11	10.22184874961635	(OCB positive vs. controls)	   1.75	[1.47-2.04] 	Illumina [495,970]	N
06/13/2013	23463857	Ritchie MD	03/05/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23463857	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	3p22.2	3	38550915	SCN5A	SCN5A			6331			rs1805126-A	rs1805126	0	1805126	cds-synon	0	0.655	3E-20	19.52287874528034	(QRS duration - CHARGE)	    .66	[NR] msec decrease	Illumina [528,508]	N
06/13/2013	23463857	Ritchie MD	03/05/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23463857	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	6q22.31	6	118641577	C6orf204	CEP85L			387119			rs6906287-C	rs6906287	0	6906287	intron	0	0.451	6E-16	15.22184874961635	(QRS duration - CHARGE)	    .54	[NR] msec increase	Illumina [528,508]	N
06/13/2013	23463857	Ritchie MD	03/05/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23463857	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	6p21.2	6	36651044	CDKN1A	TRNAI25			100189401			rs1321313-C	rs1321313	0	1321313		0	0.742	5E-25	24.30102999566398	(QRS duration - CHARGE)	    .81	[NR] msec decrease	Illumina [528,508]	N
06/13/2013	23463857	Ritchie MD	03/05/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23463857	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	1p31.3	1	61432295	NFIA	NFIA			4774			rs2207790-A	rs2207790	0	2207790	intron	0	0.461	6E-18	17.22184874961635	(QRS duration - CHARGE)	    .60	[NR] msec decrease	Illumina [528,508]	N
06/13/2013	23463857	Ritchie MD	03/05/2013	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/23463857	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	3p22.2	3	38725184	SCN10A	SCN10A			6336			rs6795970-A	rs6795970	0	6795970	missense	0	0.396	5E-27	26.30102999566398	(QRS duration - CHARGE)	    .75	[NR] msec increase	Illumina [528,508]	N
06/11/2013	23459936	Divaris K	03/04/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23459936	Exploring the genetic basis of chronic periodontitis: a genome-wide association study.	Periodontitis	4,504 European ancestry individuals	656 European ancestry and African American individuals	7p15.3	7	24338421	NPY	NPY - MPP6	4852	51678		       46.56	      235.05	rs2521634-?	rs2521634	0	2521634	Intergenic	1	NR	4E-7	6.397940008672037	(Severe CPd)	   1.49	[1.28-1.73] 	Affymetrix [2,135,236] (imputed)	N
06/11/2013	23459936	Divaris K	03/04/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23459936	Exploring the genetic basis of chronic periodontitis: a genome-wide association study.	Periodontitis	4,504 European ancestry individuals	656 European ancestry and African American individuals	6p21.1	6	41411577	NCR2	TRNAI25			100189401			rs7762544-?	rs7762544	0	7762544		0	NR	8E-8	7.096910013008055	(Moderate CPd)	   1.40	[1.24-1.59] 	Affymetrix [2,135,236] (imputed)	N
06/11/2013	23459936	Divaris K	03/04/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23459936	Exploring the genetic basis of chronic periodontitis: a genome-wide association study.	Periodontitis	4,504 European ancestry individuals	656 European ancestry and African American individuals	19p13.3	19	6887725	EMR1, VAV1	EMR1			2015			rs3826782-?	rs3826782	0	3826782	intron	0	NR	8E-7	6.096910013008056	(Moderate CPd)	   2.01	[1.52-2.65] 	Affymetrix [2,135,236] (imputed)	N
04/11/2013	23314186	Crosslin DR	03/03/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23314186 	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 other ancestry individuals	NR	2q31.3	2	181463487	ITGA4	ITGA4			3676			rs2124440-G	rs2124440	0	2124440	intron	0	0.45	5E-17	16.30102999566398		    .22	[NR] unit decrease	Illumina [NR]	N
04/11/2013	23314186	Crosslin DR	03/03/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23314186 	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 other ancestry individuals	NR	3q21.3	3	128619757	RPN1	RPN1			6184			rs2712381-A	rs2712381	0	2712381	intron	0	0.40	2E-16	15.69897000433602		    .23	 unit decrease	Illumina [NR]	N
04/11/2013	23314186	Crosslin DR	03/03/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23314186 	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 other ancestry individuals	NR	3p22.1	3	42864624	CCBP2	ACKR2			1238			rs2228467-G	rs2228467	0	2228467	missense	0	0.06	2E-7	6.698970004336019		    .30	 unit increase	Illumina [NR]	N
04/11/2013	23314186	Crosslin DR	03/03/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23314186 	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 other ancestry individuals	NR	3p22.1	3	42865620	CCBP2	ACKR2			1238			rs2228468-C	rs2228468	0	2228468	missense	0	0.36	5E-7	6.30102999566398		    .14	 unit decrease	Illumina [NR]	N
04/11/2013	23314186	Crosslin DR	03/03/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23314186 	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 other ancestry individuals	NR	9q31.3	9	111586337	PTGR1	PTGR1			22949			rs2273788-A	rs2273788	0	2273788	intron	0	0.26	5E-7	6.30102999566398		    .16	 unit increase	Illumina [NR]	N
04/11/2013	23314186	Crosslin DR	03/03/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23314186 	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 other ancestry individuals	NR	16q24.1	16	85912844	IRF8	IRF8			3394			rs424971-G	rs424971	0	424971	intron	0	0.47	3E-16	15.52287874528034		    .22	 unit decrease	Illumina [NR]	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	10q26.13	10	122454932	ARMS2, HTRA1	ARMS2			387715			rs10490924-T	rs10490924	0	10490924	missense	0	0.3	4E-540	539.3979400086721		   2.76	[2.72-2.80] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	1q31.3	1	196710325	CFH	CFH			3075			rs10737680-A	rs10737680	0	10737680	intron	0	0.64	1E-434	434		   2.43	[2.39-2.47] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	6	31962685	C2, CFB	SKIV2L			6499			rs429608-G	rs429608	0	429608	intron	0	0.86	4E-89	88.39794000867202		   1.74	[1.68-1.79] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	19p13.3	19	6718376	C3	C3			718			rs2230199-C	rs2230199	0	2230199	missense	0	0.2	1E-41	41		   1.42	[1.37-1.47] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	22q12.3			TIMP3	 - 						rs5749482-G	rs5749482					0.74	2E-26			   1.31	[1.26-1.36] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	19q13.32	19	44919689	APOE	APOC1			341			rs4420638-A	rs4420638	0	4420638	nearGene-3	0	0.83	2E-20	19.69897000433602		   1.30	[1.24-1.36] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	16q13	16	56963321	CETP	CETP			1071			rs1864163-G	rs1864163	0	1864163	intron	0	0.76	7E-16	15.15490195998574		   1.22	[1.17-1.27] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.1	6	43858890	VEGFA	TRNAI25			100189401			rs943080-T	rs943080	0	943080		0	0.51	9E-16	15.04575749056067		   1.15	[1.12-1.18] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	8p21.3	8	23225458	TNFRSF10A	TNFRSF10A;LOC389641			8797;389641			rs13278062-T	rs13278062	0	13278062	nearGene-5;ncRNA	0	0.48	3E-15	14.52287874528034		   1.15	[1.12-1.19] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	15q21.3	15	58396268	LIPC	LOC102724766			102724766			rs920915-C	rs920915	0	920915	intron	0	0.48	3E-11	10.52287874528034		   1.13	[1.09-1.17] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	4q25	4	109669323	CFI	CCDC109B			55013			rs4698775-G	rs4698775	0	4698775	intron	0	0.31	7E-11	10.15490195998574		   1.14	[1.10-1.17] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6q22.1	6	116122572	COL10A1	COL10A1;NT5DC1			1300;221294			rs3812111-T	rs3812111	0	3812111	intron;intron	0	0.64	2E-8	7.698970004336018		   1.10	[1.07-1.14] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	3q12.1	3	99762695	COL8A1, FILIP1L	COL8A1			1295			rs13081855-T	rs13081855	0	13081855	intron	0	0.1	4E-13	12.39794000867204		   1.23	[1.17-1.29] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	6p21.33	6	30806580	IER3, DDR1	TRNAI25			100189401			rs3130783-A	rs3130783	0	3130783		0	0.79	2E-11	10.69897000433602		   1.16	[1.11-1.20] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	22q13.1	22	38080269	SLC16A8	SLC16A8;LOC101927119			23539;101927119			rs8135665-T	rs8135665	0	8135665	intron;nearGene-5	0	0.21	2E-11	10.69897000433602		   1.15	[1.11-1.19] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	9q22.33	9	99146083	TGFBR1	TGFBR1			7046			rs334353-T	rs334353	0	334353	intron	0	0.73	3E-11	10.52287874528034		   1.13	[1.10-1.17] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	14q24.1	14	68318360	RAD51B	RAD51B			5890			rs8017304-A	rs8017304	0	8017304	intron	0	0.61	9E-11	10.04575749056067		   1.11	[1.08-1.14] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	3p14.1	3	64719689	ADAMTS9	ADAMTS9-AS2			100507098			rs6795735-T	rs6795735	0	6795735	intron	0	0.46	5E-9	8.301029995663981		   1.10	[1.07-1.14] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
07/31/2013	23455636	Fritsche LG	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455636	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	13q12.3	13	31245188	B3GALTL	B3GALTL			145173			rs9542236-C	rs9542236	0	9542236	intron	0	0.44	2E-8	7.698970004336018		   1.10	[1.07-1.14] 	Illumina & Affymetrix [2,442,884] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	2p13.2	2	71298655	ZNF638	ZNF638			27332			rs12612930-C	rs12612930	0	12612930	intron	0	0.6	2E-10	9.698970004336017		    .10	[0.069-0.131] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	11q21	11	96262284	MAML2	MAML2			84441			rs11021504-A	rs11021504	0	11021504	intron	0	0.51	8E-9	8.096910013008056		    .08	[0.054-0.112] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	12q13.3	12	56286961	CS, STAT2	CS			1431			rs3816804-C	rs3816804	0	3816804	intron	0	0.77	3E-9	8.522878745280337		    .12	[0.082-0.164] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	15q21.2	15	51281336	CYP19A1	CYP19A1			1588			rs3751599-G	rs3751599	0	3751599	intron	0	0.93	5E-10	9.301029995663981		    .19	[0.13-0.25] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	18q21.1	18	48339226	C18orf12	ZBTB7C			201501			rs11082671-G	rs11082671	0	11082671	intron	0	0.79	2E-8	7.698970004336018		    .11	[0.07-0.144] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	2q37.3	2	241114131	PASK	PASK			23178			rs17382723-C	rs17382723	0	17382723	intron	0	0.96	3E-7	6.522878745280337		    .21	[0.13-0.28] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	3q26.32	3	176209663	NAALADL2	EI24P1 - MIR7977	100129423	102465858		      140.76	      305.44	rs11923600-G	rs11923600	0	11923600	Intergenic	1	0.71	8E-6	5.096910013008055		    .08	[0.047-0.121] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	6p22.1	6	29553100	OR2I1P	TRNAI25			100189401			rs16895057-T	rs16895057	0	16895057		0	0.95	3E-6	5.522878745280337		    .15	[0.088-0.218] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	10q21.1	10	58451030	TFAM	TFAM - BICC1	7019	80114		       51.80	       61.99	rs10509091-T	rs10509091	0	10509091	Intergenic	1	0.35	6E-6	5.221848749616356		    .07	[0.043-0.105] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	12q24.32	12	128701645	TMEM132C	TMEM132C			92293			rs10773568-A	rs10773568	0	10773568	intron	0	0.42	3E-6	5.522878745280337		    .07	[0.043-0.105] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/01/2013	23456168	Hao Y	03/03/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456168	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	16q24.3	16	89659627	C16orf55	CHMP1A;SPATA33			5119;124045			rs154663-T	rs154663	0	154663	nearGene-5;intron	0	0.29	9E-7	6.045757490560675		    .08	[0.051-0.117] unit increase	Affymetrix [1,532,051] (Imputed)	N
06/11/2013	23455637	Iles MM	03/03/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23455637	A variant in FTO shows association with melanoma risk not due to BMI.	Melanoma	1,353 European ancestry cases, 3,566 European ancestry controls	12,313 European ancestry cases, Up to 55,667 European ancestry controls	16q12.2	16	54080912	FTO	FTO			79068			rs16953002-A	rs16953002	0	16953002	intron	0	0.17	4E-12	11.39794000867204		   1.16	[1.11-1.20] 	Illumina [2.6 million] (Imputed)	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	10q24.2	10	98387303	PYROXD2	PYROXD2			84795			rs4345897-G	rs4345897	0	4345897	cds-synon	0	NR	2E-91	90.69897000433602	(Caprolactam)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	11q12.2	11	61803910	FADS1	FADS1			3992			rs174549-G	rs174549	0	174549	intron	0	NR	2E-30	29.69897000433602	(Glycerolphosphocholine)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	2q34	2	210210185	ACADL	ACADL			33			rs3764913-T	rs3764913	0	3764913	intron	0	NR	4E-29	28.39794000867204	(2,6 dimethylheptanoyl carnitine)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	19p13.12	19	15879621	CYP4F2	CYP4F2			8529			rs2108622-T	rs2108622	0	2108622	missense	0	NR	9E-24	23.04575749056067	(Glycerolphosphocholine)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	2q37.1	2	233759924	UGT1A8	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs887829-T	rs887829	0	887829	intron;intron;intron;intron;intron;intron;intron;nearGene-5;intron	0	NR	9E-25	24.04575749056067	(Bilirubin)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	7q21.3	7	95308945	PON1	PON1			5444			rs2057681-G	rs2057681	0	2057681	intron	0	NR	7E-15	14.15490195998574	(C9H14Ona)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	15q21.3	15	58438954	LIPC	LIPC;LOC101928694			3990;101928694			rs261342-C	rs261342	0	261342	intron;intron	0	NR	9E-13	12.04575749056067	(Glycerophospho-N-Palmitoyl Ethanolamine)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	12p12.1	12	21229685	SLCO1B1	SLCO1B1			10599			rs11045879-C	rs11045879	0	11045879	intron	0	NR	5E-15	14.30102999566398	(Glycochenodeoxycholic acid 3-glucuronide)	NR	NR	Affymetrix [333,722]	N
03/22/2013	23281178	Hong MG	03/01/2013	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/23281178 	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls 	489 European ancestry prostate cancer cases	17q23.3	17	63492371	ACE	ACE			1636			rs4351-A	rs4351	0	4351	intron	0	NR	9E-13	12.04575749056067	(Unknown)	NR	NR	Affymetrix [333,722]	N
06/18/2013	23456092	Park BL	03/01/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23456092	Extended genetic effects of ADH cluster genes on the risk of alcohol dependence: from GWAS to replication.	Alcohol dependence	117 Korean ancestry cases, 279 Korean ancestry controls	504 Korean ancestry cases, 471 Korean ancestry controls	4q23	4	99318162	ADH5, ADH4, ADH6, ADH1A, ADH7, ADH1B, ADH1C	ADH1B			125			rs1229984-?	rs1229984	0	1229984	missense	0	NR	3E-21	20.52287874528034		   2.35	[1.95-2.84] 	Illumina [427,349]	N
05/30/2013	23533358	Liu Z	02/28/2013	ScientificWorldJournal	http://www.ncbi.nlm.nih.gov/pubmed/23533358	NCK2 is significantly associated with opiates addiction in African-origin men.	Addiction	1,393 European ancestry women, 1,131 European ancestry men, 568 African ancestry women, 535 African ancestry men	NR	2q12.2	2	105840835	NCK2	NCK2			8440			rs2377339-G	rs2377339	0	2377339	intron	0	.0159	1E-11	11	(Opiates - African ancestry men - allelic test)	  13.87	NR unit increase	Illumina [859,185]	N
05/30/2013	23533358	Liu Z	02/28/2013	ScientificWorldJournal	http://www.ncbi.nlm.nih.gov/pubmed/23533358	NCK2 is significantly associated with opiates addiction in African-origin men.	Addiction	1,393 European ancestry women, 1,131 European ancestry men, 568 African ancestry women, 535 African ancestry men	NR	1q32.1[rs12043259]; 2q12.2[rs6747023]			NCK2	 - 						14-SNP Haplotype	rs12043259, rs6747023, rs7589342, rs12995333, rs4851870, rs1465641, rs1465639, rs6741172, rs12995849, rs2163350, rs7589561, rs4851095, rs2377339, rs2163349					NR	2E-11		(AGTTCAGATCTCGT - Opiates)	NR	NR	Illumina [859,185]	N
05/30/2013	23533358	Liu Z	02/28/2013	ScientificWorldJournal	http://www.ncbi.nlm.nih.gov/pubmed/23533358	NCK2 is significantly associated with opiates addiction in African-origin men.	Addiction	1,393 European ancestry women, 1,131 European ancestry men, 568 African ancestry women, 535 African ancestry men	NR	2q12.2	2	105840835	NCK2	NCK2			8440			rs2377339-G	rs2377339	0	2377339	intron	0	.0159	2E-8	7.698970004336018	(codependence - African ancestry men - adjusted analysis)	NR	NR	Illumina [859,185]	N
05/26/2013	23406873	Shi Y	02/28/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23406873	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls	5q31.3	5	141809602	PCDH1	ARAP3 - PCDH1	64411	5097		      127.37	       43.49	rs248471-G	rs248471	0	248471	Intergenic	1	0.277	2E-6	5.698970004336018		   1.19	[1.11-1.28] 	Illumina [286,031]	N
05/26/2013	23406873	Shi Y	02/28/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23406873	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls	7q36.3	7	159054238	VIPR2	VIPR2			7434			rs2730260-C	rs2730260	0	2730260	intron	0	0.238	9E-14	13.04575749056067		   1.33	[1.23-1.44] 	Illumina [286,031]	N
05/26/2013	23406873	Shi Y	02/28/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23406873	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls	8q24.12	8	120550178	SNTB1	SNTB1			6641			rs4455882-A	rs7839488	0	7839488	intron	0	0.765	2E-11	10.69897000433602		   1.32	[1.22-1.43] 	Illumina [286,031]	N
05/26/2013	23406873	Shi Y	02/28/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23406873	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls	8q24.12[rs7839488]; 8q24.12[rs4395927]			SNTB1	 - 						3-SNP Haplotype	rs7839488, rs4395927, rs4455882					0.728	8E-12		(rs7839488-G, rs4395927-C, rs4455882-A)	   1.31	[1.22-1.42] 	Illumina [286,031]	N
05/26/2013	23406873	Shi Y	02/28/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23406873	A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population.	Myopia (pathological)	665 Han Chinese ancestry cases, 960 Han Chinese ancestry controls	2,128 Han Chinese ancestry cases, 3,683 Han Chinese ancestry controls	8q24.12[rs7839488]; 8q24.12[rs4395927]			SNTB1	 - 						3-SNP Haplotype	rs7839488, rs4395927, 4455882					0.235	4E-10		(rs7839488-A, rs4395927-T, 4455882-G)	   1.30	[1.2-1.41] 	Illumina [286,031]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		1p36.23[rs9628987]; 1p36.23[rs2289731]			SLC45A1	 - 						5-SNP haplotype	rs9628987,rs2289731,rs12711517,rs2305016,rs7535752					0.76	5E-6		(Haplotype - ?????)	   1.23	[1.12-1.35] 	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		4q27[rs17435444]; 4q27[rs13116936]			TNIP3	 - 						2-SNP haplotype	rs17435444,rs13116936					0.64	3E-7		(Haplotype - AG)	   1.23	[1.13-1.33] 	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		10p15.1[rs17141741]; 10p15.1[rs2386661]			NR	 - 						3-SNP Haplotype	rs17141741,rs2386661,rs4414128					0.78	5E-6		(Haplotype - ???)	   1.27	[1.14-1.39] 	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		14q24.1[rs765899]; 14q24.1[rs737387]			NR	 - 						6-SNP Haplotype	rs765899,rs737387,rs2842347,rs757369,rs10132579,rs2842346					0.95	2E-6		(Haplotype - ??????)	   1.67	[1.35-2.08] 	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		10q22.3	10	79295869	NR	ZMIZ1			57178			rs12355688-T	rs12355688	0	12355688	intron	0	0.22	6E-6	5.221848749616356		   1.24	[1.13-1.36] 	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		1p36.23[rs9628987]; 1p36.23[rs7535752]			NR	 - 						5-SNP Haplotype	rs9628987, rs7535752					NR	5E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		3p26.1[rs6797852]; 3p26.1[rs1810320]			NR	 - 						5-SNP Haplotype	rs6797852, rs1810320					NR	3E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		4q27[rs17051310]; 4q27[rs13116936]			NR	 - 						5-SNP Haplotype	rs17051310, rs13116936					NR	2E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		4q27[rs921551]; 4q27[rs4455437]			NR	 - 						5-SNP Haplotype	rs921551, rs4455437					NR	2E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		4q27[rs17435444]; 4q27[rs6835704]			NR	 - 						5-SNP Haplotype	rs17435444, rs6835704					NR	2E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		5p15.32[rs3806872]; 5p15.32[rs16875333]			NR	 - 						5-SNP Haplotype	rs3806872, rs16875333					NR	3E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		12q22[rs11613298]; 12q22[rs2230754]			NR	 - 						5-SNP Haplotype	rs11613298, rs2230754					NR	5E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
06/06/2013	23468962	Song C	02/28/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23468962	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases; 2,745 African American controls		17q23.2[rs3785856]; 17q23.2[rs10853029]			NR	 - 						5-SNP Haplotype	rs3785856, rs10853029					NR	8E-6		(Haplotype-?????)	NR	NR	Illumina [1,006,480]	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	16p11.2	16	29956113	MAPK3	KCTD13 - TMEM219	253980	124446		       29.89	        5.92	rs4788196-G	rs4788196	0	4788196	Intergenic	1	0.44	9E-11	10.04575749056067	(Single Height)	    .07	[0.048-0.092] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	12q24.31	12	123600955	DDX55	DDX55			57696			rs786425-G	rs786425	0	786425	nearGene-5	0	0.4	3E-6	5.522878745280337	(Single Height)	    .06	[0.038-0.082] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	12p12.3	12	14813670	C12orf60,HIST4H4	C12orf60;SMCO3			144608;440087			rs4764124-C	rs4764124	0	4764124	intron;intron	0	0.52	8E-7	6.096910013008056	(Single Height)	    .05	[0.03-0.07] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	6p22.1	6	28162011	ZNF	ZNF192P1			651302			rs1150668-G	rs1150668	0	1150668	intron	0	0.43	2E-7	6.698970004336019	(Single Height)	    .06	[0.038-0.082] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	11q22.1	11	102138549	YAP1	YAP1			10413			rs11225148-G	rs11225148	0	11225148	intron	0	0.06	2E-6	5.698970004336018	(Single Height)	    .10	[0.051-0.149] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	1p31.1	1	76011522	ST6	LOC101927342			101927342			rs12122440-C	rs12122440	0	12122440	intron	0	0.16	2E-6	5.698970004336018	(Single Height)	    .08	[0.049-0.111] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	1q32.1	1	205720679	NUCKS1,RAB7L1	NUCKS1			64710			rs823094-G	rs823094	0	823094	intron	0	0.43	2E-7	6.698970004336019	(Single Height)	    .05	[0.03-0.07] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	5q35.3	5	178999318	GRM6	GRM6 - ZNF879	2916	345462		        4.20	       24.46	rs11249608-C	rs11249608	0	11249608	Intergenic	1	0.69	6E-7	6.221848749616355	(Single Height-female)	    .08	[0.049-0.111] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	1p32.2	1	57160259	DAB1	DAB1			1600			rs17541203-C	rs17541203	0	17541203	intron	0	0.082	2E-6	5.698970004336018	(Single Height-female)	    .13	[0.073-0.187] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	19q13.33	19	48711017	MAMSTR	FUT2 - MAMSTR	2524	284358		        5.08	        1.73	rs281379-G	rs281379	0	281379	Intergenic	1	0.52	5E-8	7.30102999566398	(Single Height-males)	    .07	[0.043-0.097] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	9q21.12	9	70542500	TRPM3	TRPM3			80036			rs10780944-G	rs10780944	0	10780944	intron	0	0.19	8E-7	6.096910013008056	(Single Height-males)	    .09	[0.053-0.127] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		6p21.31	6	34796205	C6orf106	UHRF1BP1			54887			rs9469890-C	rs9469890	0	9469890	intron	0	0.88	9E-8	7.045757490560674	(Pubertal growth)	    .12	[0.077-0.163] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		2p23.3	2	24946331	ADCY3,DNAJC27,POMC	DNAJC27			51277			rs1172294-G	rs1172294	0	1172294	ncRNA	0	0.45	1E-8	8	(Pubertal growth)	    .08	[0.053-0.107] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		3p12.1	3	86801468	VGLL3	PRKRIRP2 - VGLL3	100422711	389136		      786.15	      136.51	rs7628864-G	rs7628864	0	7628864	Intergenic	1	0.38	3E-9	8.522878745280337	(Pubertal growth, females)	    .11	[0.073-0.147] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		9q31.3	9	111531354	ZNF483	ZNF483			158399			rs10980926-G	rs10980926	0	10980926	intron	0	0.65	2E-7	6.698970004336019	(Pubertal growth)	    .07	[0.043-0.097] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		6p21.32	6	32415273	HLA-DRA,TAP2	TRNAI25			100189401			rs4959027-G	rs4959027	0	4959027		0	0.82	9E-7	6.045757490560675	(Pubertal growth)	    .09	[0.057-0.123] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		4q21.21	4	81223772	PRKG2, BMP3	PRKG2 - RASGEF1B	5593	153020		        8.66	      202.62	rs1662853-C	rs1662853	0	1662853	Intergenic	1	0.76	1E-7	7	(Pubertal growth)	    .08	[0.051-0.109] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		12q22	12	93589778	SOCS2	SOCS2 - CRADD	8835	8738		        3.49	       87.57	rs7953508-C	rs7953508	0	7953508	Intergenic	1	0.72	4E-6	5.397940008672037	(Pubertal growth)	    .07	[0.041-0.099] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		6p21.33	6	31392478	MICA,VARS2	TRNAI25			100189401			rs7751505-C	rs7751505	0	7751505		0	0.28	4E-6	5.397940008672037	(Pubertal growth)	    .07	[0.041-0.099] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		13q14.3	13	50532652	DLEU7	RPL34P26 - DLEU7	100130718	220107		      170.89	      179.97	rs3118906-G	rs3118906	0	3118906	Intergenic	1	0.69	5E-6	5.301029995663981	(Pubertal growth)	    .07	[0.043-0.097] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		1p31.1	1	74527379	TNNI3K	TNNI3K;FPGT-TNNI3K			51086;100526835			rs1514174-C	rs1514174	0	1514174	intron;intron	0	0.47	6E-6	5.221848749616356	(Pubertal growth, females)	    .08	[0.045-0.115] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		9q31.3	9	111531354	ZNF483	ZNF483			158399			rs10980926-G	rs10980926	0	10980926	intron	0	0.65	3E-6	5.522878745280337	(Pubertal growth,males)	    .10	[0.059-0.141] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		6q16.3	6	104916546	LIN28B	HACE1 - LINC00577	57531	100113403		       56.63	       19.75	rs11156429-G	rs11156429	0	11156429	Intergenic	1	0.55	2E-7	6.698970004336019	(Late pubertal growth, females)	    .11	[0.071-0.149] unit decrease	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		9q31.2	9	106204807	TMEM38B	SLC25A6P5 - MIR8081	100129319	102465995		      354.21	      396.12	rs2090409-C	rs2090409	0	2090409	Intergenic	1	0.66	2E-6	5.698970004336018	(Late pubertal growth, males)	    .11	[0.065-0.155] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/31/2013	23449627	Cousminer DL	02/27/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23449627	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females		6q16.3	6	104931079	LIN28B	HACE1 - LINC00577	57531	100113403		       71.16	        5.22	rs7759938-C	rs7759938	0	7759938	Intergenic	1	0.32	4E-9	8.397940008672036	(Late pubertal growth)	    .11	[0.079-0.141] unit increase	Illumina & Affymetrix [~2.5 million] (imputed)	N
05/26/2013	23454411	Lin MT	02/27/2013	Transl Res	http://www.ncbi.nlm.nih.gov/pubmed/23454411	A genome-wide association analysis identifies novel susceptibility loci for coronary arterial lesions in patients with Kawasaki disease.	Coronary arterial lesions in patients with Kawasaki disease	64 East Asian ancestry serious cases, 70 East Asian ancestry minor cases	117 East Asian ancestry serious cases, 128 East Asian ancestry minor cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [470,949]	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	20p13	20	614136	NR	TCF15 - SRXN1	6939	140809		        3.87	       32.48	rs1533087-T	rs1533087	0	1533087	Intergenic	1	NR	9E-6	5.045757490560675	(Modelling analysis)	   1.06	[1.03-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	7p22.3	7	2001797	NR	MAD1L1			8379			rs1107592-A	rs1107592	0	1107592	intron	0	NR	5E-6	5.301029995663981	(Modelling analysis)	   1.06	[1.03-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10p14	10	6904301	Intergenic	LINC00707 - SFMBT2	100507127	57713		       61.40	      254.32	rs6602217-T	rs6602217	0	6602217	Intergenic	1	NR	2E-6	5.698970004336018	(Modelling analysis)	   1.12	[1.07-1.17] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	16p13.2	16	9581389	Intergenic	RPL21P119 - RNA5SP404	653737	100873656		      424.47	       18.71	rs12325410-T	rs12325410	0	12325410	Intergenic	1	NR	1E-6	5.999999999999999	(Modelling analysis)	   1.09	[1.05-1.13] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	16p13.2	16	9817529	GRIN2A	GRIN2A			2903			rs8058295-A	rs8058295	0	8058295	intron	0	NR	7E-6	5.154901959985742	(Modelling analysis)	   1.06	[1.04-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	19p13.12	19	14602681	NR	CLEC17A			388512			rs7254215-A	rs7254215	0	7254215	intron	0	NR	7E-6	5.154901959985742	(Modelling analysis)	   1.09	[1.05-1.13] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10p12.32	10	18312999	CACNB2	CACNB2			783			rs2799573 -?	rs2799573	0	2799573	intron	0	0.715	4E-8	7.397940008672037	(Modelling analysis)	   1.08	[1.05-1.12] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	16p12.2	16	23629146	NR	PALB2			79728			rs249954-A	rs249954	0	249954	intron	0	NR	2E-6	5.698970004336018	(Modelling analysis)	   1.07	[1.04-1.10] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	7p15.3	7	24652933	Intergenic	MPP6			51678			rs2721800-C	rs2721800	0	2721800	intron	0	NR	6E-7	6.221848749616355	(Modelling analysis)	   1.08	[1.05-1.12] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	1p35.2	1	29964421	Intergenic	PTPRU - MATN1	10076	4146		      637.61	      746.86	rs6694545-A	rs6694545	0	6694545	Intergenic	1	NR	1E-6	5.999999999999999	(Modelling analysis)	   1.07	[1.04-1.11] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	6p21.32	6	32707332	Intergenic	TRNAI25			100189401			rs9275524-T	rs9275524	0	9275524		0	NR	2E-7	6.698970004336019	(Modelling analysis)	   1.07	[1.04-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	8p12	8	34379474	Intergenic	RPL10AP3 - RPL21P80	137107	100133273		       55.80	      494.65	rs2609653-T	rs2609653	0	2609653	Intergenic	1	NR	3E-6	5.522878745280337	(Modelling analysis)	   1.13	[1.07-1.19] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	3p22.2	3	36801132	NR	HSPD1P6 - TRANK1	645548	9881		       32.25	       25.69	rs13072940-A	rs13072940	0	13072940	Intergenic	1	NR	9E-6	5.045757490560675	(Modelling analysis)	   1.06	[1.03-1.08] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	18q21.2	18	55153893	Intergenic	RNA5SP459 - TCF4	100873703	6925		        7.25	       68.44	rs9951150-A	rs9951150	0	9951150	Intergenic	1	NR	6E-7	6.221848749616355	(Modelling analysis)	   1.06	[1.04-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	18q21.2	18	55399097	TCF4	TCF4			6925			rs11152369-A	rs11152369	0	11152369	intron	0	NR	2E-7	6.698970004336019	(Modelling analysis)	   1.19	[1.12-1.28] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	3p21.1	3	52699090	NR	GLT8D1			55830			rs6765687-T	rs6765687	0	6765687	intron	0	NR	5E-6	5.301029995663981	(Modelling analysis)	   1.07	[1.04-1.11] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	3p21.1	3	52799203	ITIH3	ITIH3			3699			rs2535629-?	rs2535629	0	2535629	intron	0	0.651	3E-12	11.52287874528034		   1.10	[1.07-1.12] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	1p31.1	1	78798120	ELTD1	RPL23P3 - ELTD1	100130630	64123		      131.42	       91.64	rs10873998-T	rs10873998	0	10873998	Intergenic	1	NR	4E-6	5.397940008672037	(Modelling analysis)	   1.06	[1.03-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	15q25.3	15	88180481	NTRK3	NTRK3			4916			rs1104918-T	rs1104918	0	1104918	intron	0	NR	6E-6	5.221848749616356	(Modelling analysis)	   1.07	[1.04-1.10] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	16q24.3	16	89675088	NR	SPATA33 - CDK10	124045	8558		        4.63	        5.65	rs12443954-A	rs12443954	0	12443954	Intergenic	1	NR	1E-6	5.999999999999999	(Modelling analysis)	   1.08	[1.04-1.11] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	12q23.1	12	99104409	ANKS1B	ANKS1B;LOC101928937			56899;101928937			rs10860392-T	rs10860392	0	10860392	intron;intron	0	NR	2E-6	5.698970004336018	(Modelling analysis)	   1.06	[1.04-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	1p21.3	1	98037378	DPYD, MIR137	MIR137HG			400765			rs1625579-?	rs1625579	0	1625579	intron	0	0.801	2E-11	10.69897000433602	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2q11.2	2	102047167	MAP4K4, IL1R2	IL1R2 - IL1R1	7850	3554		       18.74	       23.21	rs2310173-T	rs2310173	0	2310173	Intergenic	1	NR	3E-6	5.522878745280337	(Modelling analysis)	   1.06	[1.03-1.08] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	4q24	4	101668126	BANK1	FLJ20021 - BANK1	90024	55024		      319.24	      122.48	rs7700191-A	rs7700191	0	7700191	Intergenic	1	NR	4E-6	5.397940008672037	(Modelling analysis)	   1.12	[1.06-1.17] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10q24.32	10	102900247	AS3MT	AS3MT;C10orf32-ASMT			57412;100528007			rs11191454-?	rs11191454	0	11191454	intron;intron	0	0.91	1E-8	8		   1.13	[1.08-1.18] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10q24.33	10	103538013	NR	NEURL1			9148			rs7069733-C	rs7069733	0	7069733	intron	0	NR	7E-6	5.154901959985742	(Modelling analysis)	   1.08	[1.04-1.12] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	8q22.3	8	105130105	ZFPM2	RPL29P18 - TMCC1P1	644103	100128132		      118.43	       64.60	rs9297357-T	rs9297357	0	9297357	Intergenic	1	NR	4E-7	6.397940008672037	(Modelling analysis)	   1.07	[1.04-1.10] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	11q22.3	11	107885825	SLC35F2, RAB39	SLC35F2 - RPLP2P3	54733	643949		       26.64	       22.52	rs2186903-A	rs2186903	0	2186903	Intergenic	1	NR	4E-6	5.397940008672037	(Modelling analysis)	   1.07	[1.04-1.11] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	13q33.3	13	108016199	FAM155A	FAM155A-IT1 - LIG4	100874375	3981		      180.74	      191.24	rs12871532-T	rs12871532	0	12871532	Intergenic	1	NR	1E-6	5.999999999999999	(Modelling analysis)	   1.06	[1.04-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	7q31.1	7	110407907	Intergenic	RPL3P8 - IMMP2L	646620	83943		      408.26	      255.14	rs4730430-T	rs4730430	0	4730430	Intergenic	1	NR	3E-6	5.522878745280337	(Modelling analysis)	   1.06	[1.03-1.08] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	5q23.3	5	131078288	NR	RPL11P2 - HINT1	133629	3094		       87.82	       81.00	rs6867265-A	rs6867265	0	6867265	Intergenic	1	NR	2E-6	5.698970004336018	(Modelling analysis)	   1.11	[1.06-1.16] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	7q33	7	138174020	Intergenic	MIR4468 - RPS17P12	100616226	442726		       50.20	      124.04	rs10255295-A	rs10255295	0	10255295	Intergenic	1	NR	5E-6	5.301029995663981	(Modelling analysis)	   1.10	[1.06-1.14] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	5q32	5	146845681	PPP2R2B	PPP2R2B			5521			rs609412-A	rs609412	0	609412	intron	0	NR	2E-6	5.698970004336018	(Modelling analysis)	   1.07	[1.04-1.10] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	6q25.2	6	152469438	SYNE1	SYNE1			23345			rs9371601-?	rs9371601	0	9371601	intron	0	0.346	4E-9	8.397940008672036	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	4q31.3	4	151987017	Intergenic	RNA5SP169 - FBXW7	100873434	55294		       15.40	      334.24	rs360932-A	rs360932	0	360932	Intergenic	1	NR	8E-6	5.096910013008055	(Modelling analysis)	   1.06	[1.03-1.08] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2q31.3	2	180212022	Intergenic	CWC22 - SCHLAP1	57703	101669767		      204.73	      480.08	rs13418455-T	rs13418455	0	13418455	Intergenic	1	NR	1E-6	5.999999999999999	(Modelling analysis)	   1.06	[1.04-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	4q35.2	4	188940097	Intergenic	HSPA8P12 - HSP90AA4P	100420038	3323		      225.07	      532.81	rs11731175-T	rs11731175	0	11731175	Intergenic	1	NR	5E-6	5.301029995663981	(Modelling analysis)	   1.06	[1.03-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	1q32.1	1	200991179	NR	KIF21B			23046			rs2297909-A	rs2297909	0	2297909	intron	0	NR	2E-6	5.698970004336018	(Modelling analysis)	   1.06	[1.04-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2q37.3	2	239191276	HDAC4, MGC16025	HDAC4			9759			rs3791556-A	rs3791556	0	3791556	intron	0	NR	8E-6	5.096910013008055	(Modelling analysis)	   1.08	[1.04-1.11] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	6p21.33	6	30945681	NR	DPCR1			135656			rs3132581-G	rs3132581	0	3132581	intron	0	NR	2E-7	6.698970004336019	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	6p21.32	6	32945469	NR	TRNAI25			100189401			rs1480380-C	rs1480380	0	1480380		0	0.908	6E-7	6.221848749616355	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	9p24.3	9	2194227	SMARCA2	SMARCA2 - VLDLR-AS1	6595	401491		         .60	      341.43	rs4741652-T	rs4741652	0	4741652	Intergenic	1	NR	7E-6	5.154901959985742	(Modelling analysis)	   1.07	[1.04-1.12] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10q21.2	10	60462349	ANK3	ANK3			288			rs10994359-C	rs10994359	0	10994359	intron	0	NR	3E-9	8.522878745280337	(5 degree of freedom test)	   1.08	[1.03-1.13] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	12p13.33	12	2236129	CACNA1C, DCP1B	CACNA1C			775			rs1006737-?	rs1006737	0	1006737	intron	0	NR	5E-9	8.301029995663981	(5 degree of freedom test)	   1.07	[1.05-1.10] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	6p22.1	6	30064745	MHC region	PPP1R11;ZNRD1			6992;30834			rs8321-?	rs8321	0	8321	nearGene-5;ncRNA	0	NR	8E-9	8.096910013008056	(5 degree of freedom test)	   1.08	[1.04-1.12] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	1p36.23	1	8362616	SLC45A1, RERE, ENO1	RERE			473			rs2252865-T	rs2252865	0	2252865	intron	0	NR	5E-7	6.30102999566398	(5 degree of freedom test)	   1.03	[1.00-1.06] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	NR			NR	 - 						rs1715-T	rs1715					NR	6E-7		(5 degree of freedom test)	   1.41	[1.29-1.53] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	1p31.1	1	78772330	IFI44L, IFI44	RPL23P3 - ELTD1	100130630	64123		      105.63	      117.43	rs4650608-T	rs4650608	0	4650608	Intergenic	1	NR	1E-6	5.999999999999999	(5 degree of freedom test)	   1.06	[1.03-1.09] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	8p12	8	34269430	Intergenic	CYCSP3 - RPL10AP3	349198	137107		      299.55	       53.53	rs6990255-T	rs6990255	0	6990255	Intergenic	1	NR	2E-6	5.698970004336018	(5 degree of freedom test)	   1.15	[1.09-1.20] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	3p22.2	3	36814539	NR	HSPD1P6 - TRANK1	645548	9881		       45.65	       12.28	rs9834970-C	rs9834970	0	9834970	Intergenic	1	NR	2E-6	5.698970004336018	(5 degree of freedom test)	   1.05	[1.03-1.07] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	8q21.3	8	88748082	MMP16	RNA5SP272 - RIPK2	100873525	8767		      351.54	     1009.65	rs7004633-?	rs7004633	0	7004633	Intergenic	1	0.184	3E-8	7.522878745280337	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	7q21.11	7	84143099	SEMA3A	SEMA3A			10371			rs447-C	rs447	0	447	intron	0	NR	4E-6	5.397940008672037	(5 degree of freedom test)	   1.03	[1.00-1.05] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	7p22.3	7	2238591	NR	FTSJ2			29960			rs7799006-C	rs7799006	0	7799006	intron	0	NR	5E-6	5.301029995663981	(5 degree of freedom test)	   1.06	[1.03-1.08] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	21q21.3	21	29640839	GRIK1	GRIK1			2897			rs363598-C	rs363598	0	363598	intron	0	NR	5E-6	5.301029995663981	(5 degree of freedom test)	   1.01	[0.98-1.03] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2q37.1	2	232871534	NR	C2orf82			389084			rs2675968-T	rs2675968	0	2675968	intron	0	NR	5E-6	5.301029995663981	(5 degree of freedom test)	   1.02	[0.99-1.04] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10q22.3	10	79193379	ZMIZ1	ZMIZ1			57178			rs703970-C	rs703970	0	703970	intron	0	NR	5E-6	5.301029995663981	(5 degree of freedom test)	   1.01	[0.99-1.03] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	11q23.3	11	118470934	NR	KMT2A			4297			rs7948661-C	rs7948661	0	7948661	intron	0	NR	5E-6	5.301029995663981	(5 degree of freedom test)	   1.05	[1.00-1.10] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	11p14.3	11	22291020	ANO5, SLC17A6	ANO5 - SLC17A6	203859	57084		        7.65	       47.10	rs11827962-C	rs11827962	0	11827962	Intergenic	1	NR	6E-6	5.221848749616356	(5 degree of freedom test)	   1.04	[0.94-1.15] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	20p13	20	4371457	Intergenic	ADRA1D - RPL7AP12	146	128668		      122.45	      219.48	rs159788-G	rs159788	0	159788	Intergenic	1	NR	7E-6	5.154901959985742	(5 degree of freedom test)	   1.01	[0.97-1.05] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2p16.3	2	48422566	NR	FOXN2 - PPP1R21	3344	129285		       43.27	       18.20	rs7565792-C	rs7565792	0	7565792	Intergenic	1	NR	7E-6	5.154901959985742	(5 degree of freedom test)	   1.03	[1.00-1.06] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	1q21.3	1	150351808	NR	PRPF3			9129			rs11587682-C	rs11587682	0	11587682	intron	0	NR	7E-6	5.154901959985742	(5 degree of freedom test)	   1.09	[1.05-1.12] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2q32.1	2	184668853	ZNF804A	ZNF804A			91752			rs7597593-T	rs7597593	0	7597593	intron	0	NR	8E-6	5.096910013008055	(5 degree of freedom test)	   1.06	[1.03-1.08] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2q23.1	2	149008736	KIF5C, LYPD6B	KIF5C			3800			rs6435387-G	rs6435387	0	6435387	intron	0	NR	8E-6	5.096910013008055	(5 degree of freedom test)	   1.13	[1.06-1.19] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	9p21.3	9	22819577	Intergenic	LINC01239			441389			rs7849973-?	rs7849973	0	7849973	intron	0	NR	8E-6	5.096910013008055	(5 degree of freedom test)	   1.05	[1.02-1.08] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	7q33	7	136461788	Intergenic	MTPN - PSMC1P3	136319	392100		      484.33	      252.04	rs10250997-C	rs10250997	0	10250997	Intergenic	1	NR	8E-6	5.096910013008055	(5 degree of freedom test)	   1.03	[0.99-1.07] 	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10q21.2	10	60519366	ANK3	ANK3			288			rs10994397-?	rs10994397	0	10994397	intron	0	0.065	7E-9	8.154901959985743		NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	11q14.1	11	79366149	ODZ4	TENM4			26011			rs12576775-?	rs12576775	0	12576775	intron	0	0.175	4E-8	7.397940008672037	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	6p22.1	6	30206354	MHC region	TRIM26			7726			rs2021722-?	rs2021722	0	2021722	intron	0	0.789	2E-12	11.69897000433602	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	18q21.2	18	55084786	CCDC68	MAP1LC3P - RNA5SP459	387615	100873703		      129.75	       61.76	rs12966547-?	rs12966547	0	12966547	Intergenic	1	0.588	3E-10	9.522878745280336	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10q24.32	10	103016151	CNNM2	CNNM2			54805			rs7914558-?	rs7914558	0	7914558	intron	0	0.587	2E-9	8.698970004336019	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	10q24.33	10	103146454	NT5C2	NT5C2			22978			rs11191580-?	rs11191580	0	11191580	intron	0	0.911	1E-8	8	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	8p23.2	8	4323322	CSMD1	CSMD1			64478			rs10503253-?	rs10503253	0	10503253	intron	0	0.193	4E-8	7.397940008672037	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	2q32.3	2	193119895	PCGEM1	RPS17P8 - GLULP6	100271070	343981		      345.47	     1009.40	rs17662626-?	rs17662626	0	17662626	Intergenic	1	0.915	5E-8	7.30102999566398	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
06/06/2013	23453885	Smoller JW	02/27/2013	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/23453885	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NR	11q24.2	11	125591814	STT3A	STT3A			3703			rs548181-?	rs548181	0	548181	nearGene-5	0	0.884	9E-7	6.045757490560675	(Modelling analysis)	NR	NR	NR [1,252,901] (imputed)	N
05/26/2013	23455491	Zuo L	02/27/2013	Drug Alcohol Depend	http://www.ncbi.nlm.nih.gov/pubmed/23455491	NKAIN1-SERINC2 is a functional, replicable and genome-wide significant risk gene region specific for alcohol dependence in subjects of European descent.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls	6,438 European ancestry individuals from 1,645 affected families	1p35.2	1	31411078	NKAIN1, SNRNP40, ZCCHC17, FABP3, SERINC2	SERINC2			347735			rs4478858-G	rs4478858	0	4478858	intron	0	NR	3E-8	7.522878745280337		   1.26	 	Illumina [805,814]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	23	154536448	G6PD, TKTL1, MECP2, MPP1	G6PD			2539			rs762516-T	rs762516	0	762516	intron	0	0.148	2E-16	15.69897000433602	(Ht, AA)	    .45	[0.34-0.56] % decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	2p21	2	46128709	PRKCE	PRKCE			5581			rs13008603-A	rs13008603	0	13008603	intron	0	0.163	4E-9	8.397940008672036	(Ht, AA)	    .28	[0.18-0.37] % decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	16	260381	ITFG3, LUCL7, NPRL3, POLR3K, RPL2B, MPG	ITFG3			83986			rs13335629-A	rs13335629	0	13335629	intron	0	0.12	3E-23	22.52287874528034	(Hgb, AA)	    .19	[0.15-0.23] g/dL decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	23	154536448	G6PD, TKTL1, MECP2, MPP1	G6PD			2539			rs762516-T	rs762516	0	762516	intron	0	0.146	4E-18	17.39794000867204	(Hgb, AA)	    .16	[0.12-0.2] g/dL decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	16	260381	ITFG3, LUCL7, NPRL3, POLR3K, RPL2B, MPG, NME4, DECR	ITFG3			83986			rs13335629-A	rs13335629	0	13335629	intron	0	0.117	9E-48	47.04575749056067	(MCHC, AA)	    .33	[0.29-0.37] g/dL decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	16	248589	ITFG3, LUCL7, NPRL3, POLR3K, RPL2B, MPG, NME4, DECR	ITFG3			83986			rs13339636-G	rs13339636	0	13339636	intron	0	0.132	2E-34	33.69897000433602	(MCH, AA)	    .68	[0.58-0.79] pg decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	6q21	6	109287294	CD164	CEP57L1 - PTCHD3P3	285753	100533665		      123.38	        1.28	rs9386791-C	rs9386791	0	9386791	Intergenic	1	0.416	1E-8	8	(MCH, AA)	    .23	[0.15-0.31] pg decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	16	260381	ITFG3, LUCL7, NPRL3, POLR3K, RPL2B, MPG, NME4, DECR, RHOT2, LMF1,WDR90	ITFG3			83986			rs13335629-A	rs13335629	0	13335629	intron	0	0.134	4E-22	21.39794000867203	(MCV, AA)	    .65	[0.52-0.78] fL decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	23	154536448	G6PD, FAM3A, F8, MPP1	G6PD			2539			rs762516-T	rs762516	0	762516	intron	0	0.137	4E-14	13.39794000867204	(MCV, AA)	   1.58	[1.17-1.99] fL increase	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	16	260381	ITFG3, LUCL7	ITFG3			83986			rs13335629-A	rs13335629	0	13335629	intron	0	0.12	7E-24	23.15490195998574	(RBC, AA)	    .17	[0.14-0.20] x10^6/uL, increase	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	23	154536002	G6PD, F8, MPP1, MECP2, CTAG2	G6PD			2539			rs1050828-T	rs1050828	0	1050828	missense	0	0.108	4E-19	18.39794000867203	(RBC, AA)	    .11	[0.0063-0.2097] x10^6/uL, decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	Xq28	23	154536002	G6PD	G6PD			2539			rs1050828-T	rs1050828	0	1050828	missense	0	0.116	2E-11	10.69897000433602	(RDW, AA)	    .03	[0.023-0.042] % decrease	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.0151	4E-6	5.397940008672037	(Hgb, AA)	    .24	[0.14-0.34] g/dL increase	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	16	259156	ITFG3	ITFG3			83986			rs1122794-A	rs1122794	0	1122794	intron	0	0.1984	1E-8	8	(MCHC)	    .16	[0.10-0.22] d/dL increase	Affymetrix & Illumina [NR]	N
06/28/2013	23446634	Chen Z	02/26/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23446634	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	16	259156	ITFG3	ITFG3			83986			rs1122794-A	rs1122794	0	1122794	intron	0	0.1955	7E-6	5.154901959985742	(MCH)	    .23	[0.13-0.33] pg increase	Affymetrix & Illumina [NR]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	5q11.2	5	52411072	PELO	RPS17P11 - PELO	100271072	53918		      128.21	      376.87	rs6889746-?	rs6889746	0	6889746	Intergenic	1	.3534	6E-6	5.221848749616356	(ACL)	   1.78	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	1p31.3	1	66657374	SGIP1	SGIP1			84251			rs6681460-?	rs6681460	0	6681460	intron	0	0.3755	7E-6	5.154901959985742	(ACL)	   1.83	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	6q14.1	6	79446542	LCA5	LOC102724109			102724109			rs12204683-?	rs12204683	0	12204683	intron	0	0.2378	7E-6	5.154901959985742	(ACL)	   1.88	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	22q11.21	22	17965347	MICAL3	MICAL3			57553			rs1978968-?	rs1978968	0	1978968	intron	0	0.2144	2E-6	5.698970004336018	(LAC)	   2.24	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	2p12	2	75563363	FAM176A	EVA1A			84141			rs17011455-?	rs17011455	0	17011455	intron	0	0.01661	5E-6	5.301029995663981	(LAC)	   5.21	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	20p12.1	20	17585424	DSTN	DSTN			11034			rs17791782-?	rs17791782	0	17791782	intron	0	0.07867	6E-6	5.221848749616356	(LAC)	   2.63	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	13q33.3	13	108728378	MYO16	MYO16			23026			rs10492418-?	rs10492418	0	10492418	intron	0	0.4292	2E-6	5.698970004336018	(anti-B2 GPI)	   2.17	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	7p14.3	7	32149928	PDE1C	PDE1C			5137			rs11975235-?	rs11975235	0	11975235	intron	0	0.4843	3E-6	5.522878745280337	(anti-B2 GPI)	   2.14	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	2q24.2	2	161029592	TANK	MIR4785 - TANK	100616364	10010		      621.71	      107.34	rs2357982-?	rs2357982	0	2357982	Intergenic	1	0.3885	3E-6	5.522878745280337	(anti-B2 GPI)	   2.19	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	13q14.11	13	40167770	FLJ42392	CDKN2AIPNLP3 - LINC00332	100874397	100874127		      349.72	       14.04	rs9315762-?	rs9315762	0	9315762	Intergenic	1	0.1535	7E-6	5.154901959985742	(anti-B2 GPI)	   2.26	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	20p12.1	20	16022761	MACROD2	MACROD2			140733			rs6080100-?	rs6080100	0	6080100	intron	0	0.2655	7E-6	5.154901959985742	(anti-B2 GPI)	   2.09	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	16q23.2	16	80158708	DYNLRB2	MAF - DYNLRB2	4094	83657		      557.98	      382.25	rs8060581-?	rs8060581	0	8060581	Intergenic	1	0.02466	1E-6	5.999999999999999	(ACL, LAC, or Anti-B2 GPI)	   6.71	[NR] 	Affymetrix [906,600]	N
05/26/2013	23509613	Kamboh MI	02/24/2013	Autoimmune Dis	http://www.ncbi.nlm.nih.gov/pubmed/23509613	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NR	2q31.2	2	179352004	SESTD1	SESTD1 - ZNF385B	91404	151126		       87.38	       89.98	rs13403289-?	rs13403289	0	13403289	Intergenic	1	0.3857	6E-6	5.221848749616356	(ACL, LAC, or anti-B2 GPI)	   2.42	[NR] 	Affymetrix [906,600]	N
06/04/2013	23432519	O'Brien RP	02/21/2013	Clin Transplant	http://www.ncbi.nlm.nih.gov/pubmed/23432519	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		18q23	18	76471019	ZNF516	ZNF516			9658			rs6565887-G	rs6565887	0	6565887	intron	0	NR	4E-8	7.397940008672037	(Five-year creatinine)	    .29	[NR] unit increase	Illumina [511,662]	N
06/04/2013	23432519	O'Brien RP	02/21/2013	Clin Transplant	http://www.ncbi.nlm.nih.gov/pubmed/23432519	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		14q11.2	14	22013585	TRAV19, TRAV20	TRA			6955			rs3811321-C	rs3811321	0	3811321		0	NR	8E-8	7.096910013008055	(Five-year creatinine)	    .48	[NR] unit increase	Illumina [511,662]	N
06/04/2013	23432519	O'Brien RP	02/21/2013	Clin Transplant	http://www.ncbi.nlm.nih.gov/pubmed/23432519	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		13q34	13	112182341	NR	LINC00403 - LINC01070	100505996	101928698		       74.33	       14.99	rs9324268-A	rs9324268	0	9324268	Intergenic	1	NR	2E-6	5.698970004336018	(Five-year creatinine)	    .17	[NR] unit increase	Illumina [511,662]	N
06/04/2013	23432519	O'Brien RP	02/21/2013	Clin Transplant	http://www.ncbi.nlm.nih.gov/pubmed/23432519	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		11q13.4	11	70819416	NR	SHANK2			22941			rs3017493-G	rs3017493	0	3017493	intron	0	NR	5E-6	5.301029995663981	(Five-year creatinine)	    .26	[NR] unit increase	Illumina [511,662]	N
05/21/2013	23437003	Paternoster L	02/21/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23437003	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	 up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	13q14.11	13	42541997	TNFSF11	FABP3P2 - TNFSF11	56677	8600		      172.24	       20.74	rs1021188-C	rs1021188	0	1021188	Intergenic	1	0.17	4E-14	13.39794000867204	(Cortical vBMD)	    .15	[0.11-0.19] unit decrease	Illumina [2,401,124] (Imputed)	N
05/21/2013	23437003	Paternoster L	02/21/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23437003	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	 up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	6q23.2	6	132994665	LOC285735	HMGB1P13 - RPL23AP46	100129706	442260		      125.81	        2.91	rs271170-T	rs271170	0	271170	Intergenic	1	0.33	3E-12	11.52287874528034	(Cortical vBMD)	    .11	[0.071-0.149] unit decrease	Illumina [2,401,124] (Imputed)	N
05/21/2013	23437003	Paternoster L	02/21/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23437003	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	 up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	8q24.12	8	118964303	TNFRSF11B	COLEC10			10584			rs7839059-A	rs7839059	0	7839059	intron	0	0.34	1E-10	10	(Cortical vBMD)	    .10	[0.061-0.139] unit decrease	Illumina [2,401,124] (Imputed)	N
05/21/2013	23437003	Paternoster L	02/21/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23437003	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	 up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	6q25.1	6	151574321	C6orf97, ESR1	CCDC170			80129			rs6909279-G	rs6909279	0	6909279	intron	0	0.40	1E-9	8.999999999999998	(Cortical vBMD)	    .09	[0.070-0.110] unit decrease	Illumina [2,401,124] (Imputed)	N
05/21/2013	23437003	Paternoster L	02/21/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23437003	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	 up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	13q14.11	13	42382485	TNFSF11	FABP3P2 - TNFSF11	56677	8600		       12.73	      180.25	rs17638544-T	rs17638544	0	17638544	Intergenic	1	0.07	5E-6	5.301029995663981	(Cortical vBMD - conditional on rs1021188)	    .13	[0.071-0.189] unit increase	Illumina [2,401,124] (Imputed)	N
05/21/2013	23437003	Paternoster L	02/21/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23437003	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	 up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	1q43	1	240433914	FMN2	FMN2			56776			rs9287237-T	rs9287237	0	9287237	intron	0	0.15	2E-9	8.698970004336019	(Trabecular vBMD)	    .19	[0.13-0.25] unit increase	Illumina [2,401,124] (Imputed)	N
05/21/2013	23437003	Paternoster L	02/21/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23437003	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	 up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	8q24.12	8	118995181	TNFRSF11B	COLEC10			10584			rs2062377-A	rs2062377	0	2062377	intron	0	0.57	1E-7	7	(Cortical vBMD)	    .08	[0.041-0.119] unit decrease	Illumina [2,401,124] (Imputed)	N
05/16/2013	23423446	Hein R	02/20/2013	Breast Cancer Res Treat	http://www.ncbi.nlm.nih.gov/pubmed/23423446	A genome-wide association study to identify genetic susceptibility loci that modify ductal and lobular postmenopausal breast cancer risk associated with menopausal hormone therapy use: a two-stage design with replication.	Breast cancer (menopausal hormone therapy interaction)	731 European ancestry cases	7,965 European and East Asian ancestry cases, 8,128 European and East Asian ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [316,974]	N
06/06/2013	23420232	Duggal P	02/19/2013	Ann Intern Med	http://www.ncbi.nlm.nih.gov/pubmed/23420232	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV patients, 919 spontaneously cleared HCV patients	461 chronic HCV patients, 284 spontaneously cleared HCV patients	19q13.2	19	39248147	IL-28B	IFNL4			101180976			rs12979860-?	rs12979860	0	12979860	intron	0	NR	2E-30	29.69897000433602		   2.20	 	Illumina [792,721] (Imputed)	N
06/06/2013	23420232	Duggal P	02/19/2013	Ann Intern Med	http://www.ncbi.nlm.nih.gov/pubmed/23420232	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV patients, 919 spontaneously cleared HCV patients	461 chronic HCV patients, 284 spontaneously cleared HCV patients	6p21.32	6	32710820	HLA	TRNAI25			100189401			rs4273729	rs4273729	0	4273729		0	NR	5E-17	16.30102999566398		   1.59	 	Illumina [792,721] (Imputed)	N
05/17/2013	23423138	Ludwig KU	02/19/2013	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23423138	A common variant in myosin-18B contributes to mathematical abilities in children with dyslexia and intraparietal sulcus variability in adults.	Mathematical ability in children with dyslexia	200 European ancestry cases	510 European ancestry cases	22q12.1	22	25763322	MYO18B	MYO18B			84700			rs133885-?	rs133885	0	133885	missense	0	NR	8E-10	9.096910013008054		   4.87	 % increase	Illumina [NR]	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	NR			ITGA6	 - 						Position 173336636-A	Position 173336636					0.43	6E-7		(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	3q26.1	3	166296681	BCHE	MTND3P7 - PSAT1P4	100873183	100287630		      135.57	      394.51	rs509208-G	rs509208	0	509208	Intergenic	1	0.16	3E-8	7.522878745280337	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	5q14.3	5	84788958	EDIL3	EDIL3 - RBBP4P6	10085	100820741		      404.09	      401.67	rs113524839-T	rs113524839	0	113524839	Intergenic	1	0.11	8E-7	6.096910013008056	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	5q21.3	5	107775475	EFNA5	EFNA5 - FBXL17	1946	64839		      104.58	       83.56	rs1422438-G	rs1422438	0	1422438	Intergenic	1	0.30	6E-7	6.221848749616355	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	19q13.32	19	44908684	APOE	APOE			348			rs429358-C	rs429358	0	429358	missense	0	0.28	5E-14	13.30102999566398	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	19q13.32	19	44919589	APOC1	APOC1			341			rs56131196-A	rs56131196	0	56131196	nearGene-3	0	0.29	4E-12	11.39794000867204	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	19q13.32	19	44888997	PVRL2	PVRL2			5819			rs6857-T	rs6857	0	6857	UTR-3	0	0.28	1E-10	10	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	19q13.32	19	44893408	TOMM40	TOMM40			10452			rs59007384-T	rs59007384	0	59007384	intron	0	0.32	7E-9	8.154901959985743	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	5q11.2	5	52509908	ITGA1	RPS17P11 - PELO	100271072	53918		      227.05	      278.03	rs7702276-T	rs7702276	0	7702276	Intergenic	1	0.36	1E-6	5.999999999999999	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	22q12.3			PIK3R1	 - 						rs24449894-A	rs24449894					0.17	2E-6		(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	9p23	9	14064742	NFIB	RPL3P11 - ATP5HP3	100131893	138864		       22.86	        4.14	rs7039300-G	rs7039300	0	7039300	Intergenic	1	0.23	2E-6	5.698970004336018	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	6q25.3	6	156688247	ARID1B	TRNAV37P - ARID1B	100189513	57492		      140.26	       89.60	rs9384488-A	rs9384488	0	9384488	Intergenic	1	0.35	3E-6	5.522878745280337	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
06/06/2013	23419831	Ramanan VK	02/19/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23419831	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NR	12q23.3	12	105714941	NUAK1, C12orf75	CASC18			101929110			rs10219670-C	rs10219670	0	10219670	intron	0	0.42	4E-6	5.397940008672037	(Cortical Ab)	NR	NR	Illumina [6,108,668] (imputed)	N
08/21/2013	23388002	Thanassoulis G	02/17/2013	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/23388002	Genetic associations with valvular calcification and aortic stenosis.	Aortic-valve calcification	6,942 European ancestry individuals	745 European ancestry individuals, 2,497 African American individuals, 2,027 Hispanic individuals, 774 Chinese ancestry individuals	6q26	6	160589086	LPA	LPA			4018			rs10455872-G	rs10455872	0	10455872	intron	0	0.07	3E-11	10.52287874528034	(European)	   2.05	[1.66-2.53] 	Affymetrix & Illumina [>2.5 million] (Imputed)	N
08/21/2013	23388002	Thanassoulis G	02/17/2013	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/23388002	Genetic associations with valvular calcification and aortic stenosis.	Mitral annular calcification	3,795 European ancestry individuals	745 European ancestry individuals, 2,497 African American individuals, 2,027 Hispanic individuals, 774 Chinese ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix & Illumina [>2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	6	29952555	HLA-A	TRNAI25			100189401			rs9260489-G	rs9260489	0	9260489		0	0.58	2E-22	21.69897000433602		    .04	[0.032-0.048] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-A	 - 						HLA-A*02:01	HLA-A*02:01					0.27	9E-10			    .03	[0.020-0.040] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		12q24.12	12	111446804	SH2B3, ATXN2	SH2B3			10019			rs3184504-C	rs3184504	0	3184504	missense	0	0.49	3E-8	7.522878745280337		    .02	[0.012-0.028] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-A	 - 						HLA-A*01:01	HLA-A*01:01					0.17	1E-8			    .03	[0.018-0.042] unit increase	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-A	 - 						HLA-A*03:01	HLA-A*03:01					0.16	2E-6			    .03	[0.018-0.042] unit increase	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-B	 - 						HLA-B*08:01	HLA-B*08:01					0.13	2E-20			    .06	[0.046-0.074] unit increase	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-B	 - 						HLA-B*15:01	HLA-B*15:01					0.07	2E-10			    .05	[0.034-0.066] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-B	 - 						HLA-B*57:01	HLA-B*57:01					0.04	4E-7			    .06	[0.038-0.082] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-C	 - 						HLA-C*07:01	HLA-C*07:01					0.16	1E-18			    .05	[0.042-0.066] unit increase	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-C	 - 						HLA-C*03:04	HLA-C*03:04					0.08	8E-8			    .04	[0.027-0.059] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		NR			HLA-C	 - 						HLA-C*03:03	HLA-C*03:03					0.05	1E-6			    .05	[0.030-0.070] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p22.1	6	30108087	TRIM31	TRIM31			11074			rs2023472-A	rs2023472	0	2023472	cds-synon	0	0.38	3E-15	14.52287874528034		    .03	[0.022-0.038] unit increase	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	6	31270541	HLA-C	HLA-C			3107			rs9264638-A	rs9264638	0	9264638	intron	0	0.58	2E-23	22.69897000433602		    .04	[0.032-0.048] unit decrease	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	6	31354782	HLA-B	HLA-B;MIR6891			3106;102465537			rs2523608-A	rs2523608	0	2523608	intron;nearGene-3	0	0.59	9E-9	8.045757490560675		    .02	[0.012-0.028] unit increase	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	6	31394533	HLA-B	LOC101929072			101929072			rs16899524-C	rs16899524	0	16899524	ncRNA	0	0.93	1E-8	8		    .04	[0.026-0.054] unit increase	Affymetrix [2.5 million] (Imputed)	N
06/06/2013	23417110	Tin A	02/16/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23417110	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		6p21.33	6	31437840	MICA	TRNAI25			100189401			rs2596466-C	rs2596466	0	2596466		0	0.07	2E-12	11.69897000433602		    .05	[0.034-0.066] unit decrease	Affymetrix [2.5 million] (Imputed)	N
05/24/2013	23406172	Milton JN	02/14/2013	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/23406172	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African, West African and Afro-Caribbean ancestry individuals, 745 individuals	16p13.3	16	134391	NPRL3	NPRL3			8131			rs7203560-C	rs7203560	0	7203560	intron	0	0.07	2E-9	8.698970004336019		    .44	[0.30-0.58] unit decrease	Illumina [569,554]	N
05/24/2013	23406172	Milton JN	02/14/2013	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/23406172	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African, West African and Afro-Caribbean ancestry individuals, 745 individuals	11p15.4	11	5008473	OR51L1	OR51L1 - OR51P1P	119682	79300		        8.54	        6.56	rs2445284-G	rs2445284	0	2445284	Intergenic	1	0.05	1E-29	28.99999999999999		    .82	[0.68-0.96] unit decrease	Illumina [569,554]	N
05/24/2013	23406172	Milton JN	02/14/2013	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/23406172	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African, West African and Afro-Caribbean ancestry individuals, 745 individuals	2p16.1	2	60492835	BCL11A	BCL11A			53335			rs766432-?	rs766432	0	766432	intron	0	NR	9E-7	6.045757490560675		    .22	NR unit increase	Illumina [569,554]	N
05/24/2013	23406172	Milton JN	02/14/2013	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/23406172	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African, West African and Afro-Caribbean ancestry individuals, 745 individuals	11p15.4	11	5450516	OR51I1, OR51I2	OR51I1 - OR51I2	390063	390064		        8.96	        2.89	rs7948471-A	rs7948471	0	7948471	Intergenic	1	.21	3E-10	9.522878745280336		    .26	[0.18-0.34] unit decrease	Illumina [569,554]	N
05/14/2013	23408455	Wakai K	02/14/2013	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23408455	Genome-wide association study of genetic factors related to confectionery intake: potential roles of the ADIPOQ gene.	Confectionary intake	939 Japanese ancestry individuals	4,491 Japanese ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [491,738]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		8p23.3	8	1935186	ARHGEF10	ARHGEF10;LOC100131395			9639;100131395			rs13279485-?	rs13279485	0	13279485	intron;ncRNA	0	NR	1E-6	5.999999999999999	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		2p25.1	2	7913466	LOC339788	RNF144A - LINC00298	9781	339788		      869.29	        8.96	rs4669226-?	rs4669226	0	4669226	Intergenic	1	NR	5E-6	5.301029995663981	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		13q14.2	13	49611068	ARL11	RCBTB1 - ARL11	55213	115761		       25.48	       17.23	rs9568281-?	rs9568281	0	9568281	Intergenic	1	NR	3E-7	6.522878745280337	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		11q22.2	11	102757321	MMP10	LOC100128088			100128088			rs7924357-?	rs7924357	0	7924357		0	NR	1E-6	5.999999999999999	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		6q16.3	6	104775989	HACE1	HACE1			57531			rs733724-?	rs733724	0	733724	intron	0	NR	3E-7	6.522878745280337	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		10q25.2	10	112628513	VTI1A	VTI1A			143187			rs17267338-?	rs17267338	0	17267338	intron	0	NR	8E-6	5.096910013008055	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		8q24.12	8	118379170	SAMD12	SAMD12			401474			rs17749211-?	rs17749211	0	17749211	intron	0	NR	8E-6	5.096910013008055	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		2q21.2	2	133472646	NAP5	NCKAP5			344148			rs1821625-?	rs1821625	0	1821625	intron	0	NR	7E-6	5.154901959985742	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		4q32.3	4	165909212	TLL1	TLL1			7092			rs12513380-?	rs12513380	0	12513380	intron	0	NR	5E-6	5.301029995663981	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		1q25.1	1	173315060	AK127238	LOC100506023			100506023			rs4916321-?	rs4916321	0	4916321	intron	0	NR	7E-6	5.154901959985742	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		1q25.3	1	182579884	RNASEL	RNASEL			6041			rs533259-?	rs533259	0	533259	intron	0	NR	6E-9	8.221848749616356	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		4q34.3	4	179746494	LOC285501	RNA5SP173 - LINC00290	100873437	728081		     1339.66	     1317.60	rs17090640-?	rs17090640	0	17090640	Intergenic	1	NR	3E-6	5.522878745280337	(Cluxel size)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		Xp21.1	23	34874386	TMEM47	TMEM47 - FAM47B	83604	170062		      217.10	       68.41	rs4271113-?	rs4271113	0	4271113	Intergenic	1	NR	9E-7	6.045757490560675	(Cluxel minimum distance)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		18q12.1	18	31209762	DSC1	DSC1 - DSG1	1823	1828		       46.91	      108.33	rs2920001-?	rs2920001	0	2920001	Intergenic	1	NR	1E-6	5.999999999999999	(Cluxel minimum distance)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		11p15.4	11	3238579	MRGPRE 	MRGPRE - NDUFA5P1	116534	4699		        6.19	       83.29	rs11026091-?	rs11026091	0	11026091	Intergenic	1	NR	2E-6	5.698970004336018	(Cluxel minimum distance)	NR	NR	Illumina [208,975]	N
06/05/2013	23412934	Gourraud PA	02/13/2013	Brain	http://www.ncbi.nlm.nih.gov/pubmed/23412934	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		Xp22.2	23	13596999	EGFL6	EGFL6			25975			rs5978649-?	rs5978649	0	5978649	intron	0	NR	4E-6	5.397940008672037	(Cluxel minimum distance)	NR	NR	Illumina [208,975]	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	17q24.3	17	72598490	SLC39A11	LINC00511			400619			rs11077614-G	rs11077614	0	11077614	ncRNA	0	0.49	3E-6	5.522878745280337	(EA-glucose response) 	   3.25	[1.92-4.58] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	5p15.1	5	17002976	MYO10	RPS26P28 - RNA5SP180	643003	100873442		      100.32	      154.00	rs6870564-A	rs6870564	0	6870564	Intergenic	1	0.13	4E-6	5.397940008672037	(EA-glucose response) 	   3.84	[2.21-5.47] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	16q22.3	16	73795371	Intergenic	LOC101927998			101927998			rs427576-C	rs427576	0	427576	intron	0	0.43	4E-6	5.397940008672037	(EA-glucose response) 	   2.62	[1.5-3.74] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	4q28.2	4	128775066	PHF17	PGRMC2 - JADE1	10424	79960		      486.24	       34.56	rs1974942-A	rs1974942	0	1974942	Intergenic	1	0.1	4E-6	5.397940008672037	(EA-glucose response) 	   5.29	[3.04-7.54] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	2q37.1	2	231327593	NMUR1,HTR2B	ARMC9			80210			rs1669070-T	rs1669070	0	1669070	intron	0	0.4	4E-6	5.397940008672037	(EA-glucose response) 	   3.02	[1.73-4.31] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	4p15.2	4	23586839	PPARGC1A	CDC42P6 - PPARGC1A	643751	10891		      858.82	      205.18	rs1511453-A	rs1511453	0	1511453	Intergenic	1	0.08	5E-6	5.301029995663981	(EA-glucose response) 	   4.95	[2.83-7.07] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	9q31.1	9	102105556	GRIN3A	ARL2BPP7 - LINC00587	100131629	414319		       49.73	      441.81	rs10989824-T	rs10989824	0	10989824	Intergenic	1	0.06	7E-6	5.154901959985742	(EA-glucose response) 	   5.85	[3.3-8.4] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	6q27	6	169713148	IDDM8	PHF10			55274			rs7762018-A	rs7762018	0	7762018	intron	0	0.13	8E-6	5.096910013008055	(EA-glucose response) 	   3.65	[2.06-5.24] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	5q23.2	5	122100901	LOX	LOX - ZNF474	4015	133923		       22.54	       28.62	rs890749-C	rs890749	0	890749	Intergenic	1	0.19	8E-6	5.096910013008055	(EA-glucose response) 	   3.25	[1.82-4.68] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	5q35.3	5	180778938	MGAT1	OR2Y1 - MGAT1	134083	4245		       38.88	       11.60	rs6859974-T	rs6859974	0	6859974	Intergenic	1	0.14	8E-6	5.096910013008055	(EA-glucose response) 	   3.67	[2.06-5.28] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	10q26.2	10	126140443	ADAM12	ADAM12			8038			rs1551678-C	rs1551678	0	1551678	intron	0	0.37	9E-6	5.045757490560675	(EA-glucose response) 	   2.65	[1.49-3.81] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	5q14.3	5	88887834	MEF2C	MEF2C;MEF2C-AS1			4208;101929423			rs17560407-G	rs17560407	0	17560407	intron;intron	0	0.27	5E-7	6.30102999566398	(EA-triglyceride response)	  23.23	[14.14-32.32] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	1p22.1	1	94209170	GCLM	ARHGAP29			9411			rs2274788-C	rs2274788	0	2274788	intron	0	0.25	1E-6	5.999999999999999	(EA-triglyceride response)	  23.07	[13.8-32.34] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	11q23.3	11	118246303	PHLDB1	MPZL3			196264			rs11216831-A	rs11216831	0	11216831	intron	0	0.07	4E-6	5.397940008672037	(EA-triglyceride response)	  42.47	[24.4-60.54] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	8q12.3	8	65087728	CYP7B1	CYP7B1 - RPL31P41	9420	100271201		      288.94	       67.68	rs2980003-T	rs2980003	0	2980003	Intergenic	1	0.27	5E-6	5.301029995663981	(EA-triglyceride response)	  22.07	[12.6-31.54] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	12p13.2	12	10318451	KLRA1	KLRD1			3824			rs12303914-A	rs12303914	0	12303914	intron	0	0.35	6E-6	5.221848749616356	(EA-triglyceride response)	  20.39	[11.51-29.27] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	16q24.1	16	85873010	COX4I1	RPL10AP12 - IRF8	401863	3394		       56.44	       26.16	rs11648716-G	rs11648716	0	11648716	Intergenic	1	0.08	7E-6	5.154901959985742	(EA-triglyceride response)	  39.68	[22.37-56.99] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	6q14.1	6	80593088	BCKDHB	RPL17P25 - FAM46A	442232	55603		      218.48	     1152.64	rs10943724-A	rs10943724	0	10943724	Intergenic	1	0.31	7E-6	5.154901959985742	(EA-triglyceride response)	  19.77	[11.15-28.39] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	4q34.3	4	181301574	Intergenic	LINC00290 - MGC45800	728081	90768		      142.43	      837.43	rs17183114-T	rs17183114	0	17183114	Intergenic	1	0.14	8E-6	5.096910013008055	(EA-triglyceride response)	  26.49	[14.89-38.09] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	7p15.1	7	27964579	JAZF1	JAZF1			221895			rs4722750-T	rs4722750	0	4722750	intron	0	0.1	9E-6	5.045757490560675	(EA-triglyceride response)	  31.88	[17.85-45.91] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	11p13	11	35101504	CD44	MIR1343 - CD44	100616437	960		      159.58	       37.37	rs1559759-A	rs1559759	0	1559759	Intergenic	1	0.15	9E-6	5.045757490560675	(EA-triglyceride response)	  25.59	[14.3-36.88] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	6q24.1	6	142190999	GPR126	VTA1			51534			rs225675-G	rs225675	0	225675	intron	0	0.19	1E-7	7	(AA-glucose response) 	   5.29	[3.35-7.23] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	10q21.1	10	53647331	PCDH15	SNRPEP8 - PCDH15	100874423	65217		      608.79	      155.44	rs7077606-T	rs7077606	0	7077606	Intergenic	1	0.12	5E-7	6.30102999566398	(AA-glucose response) 	   5.44	[3.32-7.56] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	7p12.2	7	49290084	CDC14C	CDC14C - VWC2	168448	375567		      362.63	      483.58	rs7801534-G	rs7801534	0	7801534	Intergenic	1	0.17	7E-7	6.154901959985743	(AA-glucose response) 	   4.96	[3.02-6.9] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	12q23.2	12	102571551	IGF1	IGF1 - LINC00485	3479	283432		       90.95	      237.73	rs7964748-G	rs7964748	0	7964748	Intergenic	1	0.28	3E-6	5.522878745280337	(AA-glucose response) 	   4.06	[2.37-5.75] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	4q34.1	4	174150451	FBXO8	RANP6 - FBXO8	100128266	26269		      516.07	       86.21	rs12507634-G	rs12507634	0	12507634	Intergenic	1	0.19	4E-6	5.397940008672037	(AA-glucose response) 	   4.84	[2.78-6.9] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	8q22.2	8	98305511	NIPAL2	NIPAL2 - KCNS2	79815	3788		       10.30	      121.51	rs11785622-T	rs11785622	0	11785622	Intergenic	1	0.07	4E-6	5.397940008672037	(AA-glucose response) 	   7.21	[4.15-10.27] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	12q21.31	12	80069304	PPP1R12A	RPL7P38 - RPL26P32	120872	400055		       39.60	       33.56	rs10778699-A	rs10778699	0	10778699	Intergenic	1	0.24	4E-6	5.397940008672037	(AA-glucose response) 	   4.28	[2.46-6.1] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	10p15.3	10	1300822	WDR37	ADARB2			105			rs11599315-T	rs11599315	0	11599315	intron	0	0.37	5E-6	5.301029995663981	(AA-glucose response) 	   3.88	[2.21-5.55] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	2q12.1	2	102895834	MFSD9,SCL9A2	TMEM182 - AHCYP3	130827	402093		       52.00	     1499.17	rs13402330-A	rs13402330	0	13402330	Intergenic	1	0.19	6E-6	5.221848749616356	(AA-glucose response) 	   5.27	[3-7.54] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	12p12.1	12	25331259	BCAT1	KRAS - RPL39P27	3845	100133222		       80.34	       78.02	rs7965364-T	rs7965364	0	7965364	Intergenic	1	0.37	6E-6	5.221848749616356	(AA-glucose response) 	   3.79	[2.14-5.44] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	17q22	17	52216278	CA10	CA10 - C17orf112	56934	100506650		       56.26	      769.24	rs16951120-T	rs16951120	0	16951120	Intergenic	1	0.15	6E-6	5.221848749616356	(AA-glucose response) 	   4.49	[2.55-6.43] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	19p12	19	20663465	ZNF626	ZNF626			199777			rs4808260-C	rs4808260	0	4808260	nearGene-5	0	0.3	7E-6	5.154901959985742	(AA-glucose response) 	   3.71	[2.08-5.34] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	8q24.3	8	140564095	EIF2C2	AGO2			27161			rs2944755-A	rs2944755	0	2944755	intron	0	0.06	8E-6	5.096910013008055	(AA-glucose response) 	   9.45	[5.31-13.59] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	15q21.2	15	51221532	CYP19A1	CYP19A1			1588			rs6493487-G	rs6493487	0	6493487	intron	0	0.09	8E-6	5.096910013008055	(AA-glucose response) 	   5.96	[3.35-8.57] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	16q22.2	16	72223800	PMFBMP1	PMFBP1 - KRT18P18	83449	342374		       51.35	      504.77	rs17668704-A	rs17668704	0	17668704	Intergenic	1	0.61	9E-6	5.045757490560675	(AA-glucose response) 	   3.38	[1.89-4.87] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	11p15.1	11	21543533	NELL-1	NELL1			4745			rs12279250-C	rs12279250	0	12279250	intron	0	0.15	7E-9	8.154901959985743	(AA-triglyceride response)	  28.20	[18.67-37.73] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	3q26.2	3	168180033	GOLIM4	GOLIM4 - EGFEM1P	27333	93556		       84.11	       69.49	rs2686586-T	rs2686586	0	2686586	Intergenic	1	0.47	6E-8	7.221848749616355	(AA-triglyceride response)	  18.93	[11.89-25.97] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	18p11.21	18	11064410	FAM38B	PIEZO2			63895			rs12455924-T	rs12455924	0	12455924	intron	0	0.36	3E-7	6.522878745280337	(AA-triglyceride response)	  17.88	[11.04-24.72] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	12p13.31	12	7702675	GDF3	GDF3 - DPPA3	9573	359787		        6.91	        8.82	rs12307997-G	rs12307997	0	12307997	Intergenic	1	0.22	6E-7	6.221848749616355	(AA-triglyceride response)	  22.11	[13.41-30.81] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	15q25.3	15	86311359	AGBL1	AGBL1;AGBL1-AS1			123624;727915			rs10152811-A	rs10152811	0	10152811	intron;intron	0	0.69	8E-7	6.096910013008056	(AA-triglyceride response)	  18.81	[11.32-26.3] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	10q11.23	10	50250948	ASAH2	ASAH2 - DYNC1I2P1	56624	728532		        2.34	       14.02	rs10508921-T	rs10508921	0	10508921	Intergenic	1	0.13	9E-7	6.045757490560675	(AA-triglyceride response)	  25.70	[15.47-35.93] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	1q44	1	244004499	ZNF238	LOC339529			339529			rs12127679-T	rs12127679	0	12127679	intron	0	0.19	1E-6	5.999999999999999	(AA-triglyceride response)	  22.31	[13.24-31.38] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	10q24.31	10	100496440	ERLIN1	SEC31B			25956			rs9420790-A	rs9420790	0	9420790	intron	0	0.08	2E-6	5.698970004336018	(AA-triglyceride response)	  34.63	[20.46-48.8] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	9q33.2	9	121787363	DAB2IP	DAB2IP - TTLL11	153090	158135		        1.83	       28.31	rs10985375-A	rs10985375	0	10985375	Intergenic	1	0.1	2E-6	5.698970004336018	(AA-triglyceride response)	  33.94	[19.81-48.07] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	17q25.3	17	78114437	TNRC6C	TMC6			11322			rs2613514-G	rs2613514	0	2613514	intron	0	0.22	3E-6	5.522878745280337	(AA-triglyceride response)	  20.12	[11.65-28.59] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	19p13.2	19	10199716	ANGPTL6,UBL5	DNMT1 - S1PR2	1786	9294		        4.64	       21.72	rs2116940-G	rs2116940	0	2116940	Intergenic	1	0.19	3E-6	5.522878745280337	(AA-triglyceride response)	  19.71	[11.4-28.02] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	1q43	1	240120436	CHRM3	FMN2			56776			rs11810574-G	rs11810574	0	11810574	intron	0	0.15	4E-6	5.397940008672037	(AA-triglyceride response)	  23.12	[13.34-32.9] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	16p13.2	16	10094203	GRIN2A	GRIN2A			2903			rs7203315-T	rs7203315	0	7203315	intron	0	0.34	4E-6	5.397940008672037	(AA-triglyceride response)	  15.83	[9.13-22.53] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	20q13.12	20	47051863	EYA2	EYA2			2139			rs878131-A	rs878131	0	878131	intron	0	0.25	4E-6	5.397940008672037	(AA-triglyceride response)	  17.21	[9.92-24.5] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	6q22.31	6	118297818	SLC35F1	SLC35F1			222553			rs166881-C	rs166881	0	166881	intron	0	0.18	4E-6	5.397940008672037	(AA-triglyceride response)	  22.26	[12.79-31.73] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	13q12.11	13	21301957	ZDHHC20	MIPEPP3			650794			rs9788333-G	rs9788333	0	9788333	intron	0	0.11	4E-6	5.397940008672037	(AA-triglyceride response)	  28.65	[16.46-40.84] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	5q13.3	5	76928346	IQGAP2	S100Z - CRHBP	170591	1393		        7.12	       24.51	rs2460504-C	rs2460504	0	2460504	Intergenic	1	0.18	5E-6	5.301029995663981	(AA-triglyceride response)	  24.57	[14.06-35.08] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	14q32.11	14	89930230	c14ORF143	EFCAB11			90141			rs7147996-A	rs7147996	0	7147996	intron	0	0.12	6E-6	5.221848749616356	(AA-triglyceride response)	  28.09	[15.96-40.22] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	11q13.4	11	75260513	ARRB1	ARRB1			408			rs17133858-T	rs17133858	0	17133858	UTR-3	0	0.14	6E-6	5.221848749616356	(AA-triglyceride response)	  20.99	[11.92-30.06] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	15q23	15	71131670	CT62	THSD4			79875			rs12904863-C	rs12904863	0	12904863	intron	0	0.08	6E-6	5.221848749616356	(AA-triglyceride response)	  30.31	[17.22-43.4] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	4q35.1	4	184000146	STOX2	STOX2			56977			rs12498735-T	rs12498735	0	12498735	intron	0	0.25	8E-6	5.096910013008055	(AA-triglyceride response)	  19.13	[10.74-27.52] mg/dL increase	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	5q21.1	5	103428347	NUDT12	C5orf30 - NUDT12	90355	83594		      149.69	      120.51	rs2099077-A	rs2099077	0	2099077	Intergenic	1	0.29	8E-6	5.096910013008055	(AA-triglyceride response)	  16.53	[9.26-23.8] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/11/2013	23400010	Del-Aguila JL	02/12/2013	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/23400010	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NR	6q23.3	6	137352165	OLIG3	IFNGR1 - OLIG3	3459	167826		      132.74	      140.03	rs6928289-G	rs6928289	0	6928289	Intergenic	1	0.45	9E-6	5.045757490560675	(AA-triglyceride response)	  15.56	[8.68-22.44] mg/dL decrease	Illumina and Affymetrics [>2 million] (Imputed)	N
05/16/2013	23372042	Lane J	02/10/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23372042 	A genome-wide association study of resistance to HIV infection in highly exposed uninfected individuals with hemophilia A.	HIV-1 susceptibility	430 exposed uninfected Haemophilia cases, 765 HIV positive controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [1,081,435] (Imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	2q37.1	2	232542288	CHRNG, PRSS56	CHRNG			1146			rs1881492-T	rs1881492	0	1881492	intron	0	0.22	5E-11	10.30102999566398		    .14	[0.098-0.18] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	3p21.1	3	53813381	CACNA1D	CACNA1D			776			rs14165-A	rs14165	0	14165	nearGene-3	0	0.32	2E-8	7.698970004336018		    .10	[0.063-0.129] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	4q21.21	4	81009660	BMP3	C4orf22 - BMP3	255119	651		       45.90	       21.31	rs1960445-C	rs1960445	0	1960445	Intergenic	1	0.017	1E-6	5.999999999999999		    .11	[0.067-0.161] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	6q22.33	6	129513484	LAMA2	LAMA2			3908			rs12205363-C	rs12205363	0	12205363	intron	0	0.1	2E-12	11.69897000433602		    .24	[0.17-0.3] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	8q12.1	8	59266527	CHD7, TOX	TOX - RNA5SP267	9760	100873520		      147.32	      189.36	rs7837791-T	rs7837791	0	7837791	Intergenic	1	0.49	4E-12	11.39794000867204		    .11	[0.077-0.135] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	8p11.21	8	40868875	ZMAT4	ZMAT4			79698			rs7829127-G	rs7829127	0	7829127	intron	0	0.25	4E-10	9.397940008672037		    .12	[0.081-0.151] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	9q21.13	9	74534921	RORB	RORB			6096			rs7042950-G	rs7042950	0	7042950	intron	0	0.24	4E-8	7.397940008672037		    .10	[0.061-0.131] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	10q23.33	10	93164567	CYP26A1	NIP7P1 - XRCC6P1	389997	387703		       57.14	       42.09	rs10882165-T	rs10882165	0	10882165	Intergenic	1	0.42	1E-11	11		    .11	[0.076-0.138] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	10q21.1	10	58505644	BICC1	TFAM - BICC1	7019	80114		      106.41	        7.37	rs7084402-G	rs7084402	0	7084402	Intergenic	1	0.48	2E-13	12.69897000433602		    .11	[0.079-0.137] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	11q22.3	11	105685872	GRIA4	GRIA4			2893			rs11601239-C	rs11601239	0	11601239	intron	0	0.46	6E-9	8.221848749616356		    .10	[0.064-0.126] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	12q13.2	12	55720985	RDH5	RDH5;BLOC1S1-RDH5			5959;100528022			rs3138144-C	rs3138144	0	3138144	intron;intron	0	0.48	4E-12	11.39794000867204		    .12	[0.086-0.152] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	13q32.3	13	100165838	PCCA, ZIC2	PCCA			5095			rs2184971-G	rs2184971	0	2184971	intron	0	0.44	2E-8	7.698970004336018		    .09	[0.056-0.114] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	15q14	15	34713685	GJD2	MIR1233-2 - GJD2	100422845	57369		      185.31	       38.76	rs524952-A	rs524952	0	524952	Intergenic	1	0.48	1E-15	15		    .16	[0.12-0.2] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	15q25.1	15	79080533	RASGRF1	RASGRF1			5923			rs4778879-G	rs4778879	0	4778879	intron	0	0.44	4E-11	10.39794000867204		    .10	[0.073-0.131] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	17q11.2	17	32751254	MYO1D	MYO1D			4642			rs17183295-T	rs17183295	0	17183295	intron	0	0.23	1E-10	10		    .13	[0.092-0.17] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	17q24.3	17	70722593	KCNJ2	CALM2P1 - CASC17	100128390	101928165		      480.22	      375.18	rs4793501-C	rs4793501	0	4793501	Intergenic	1	0.42	3E-8	7.522878745280337		    .08	[0.053-0.107] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	18q22.3	18	74506788	CNDP2	CNDP2			55748			rs12971120-G	rs12971120	0	12971120	intron	0	0.23	2E-7	6.698970004336019		    .10	[0.062-0.136] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	4q21.21	4	79609517	LOC100506035	OR7E94P - PCAT4	79273	118425		       21.43	      217.95	rs9307551-A	rs9307551	0	9307551	Intergenic	1	0.25	1E-8	8		    .10	[0.066-0.132] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	6q13	6	72933566	KCNQ5	KCNQ5			56479			rs7744813-C	rs7744813	0	7744813	intron	0	0.41	4E-9	8.397940008672036		    .11	[0.075-0.149] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	9q21.11	9	69151677	TJP2	TJP2			9414			rs11145465-A	rs11145465	0	11145465	missense	0	0.25	7E-9	8.154901959985743		    .12	[0.083-0.165] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	12q15	12	70856216	PTPRR	PTPRR			5801			rs12229663-G	rs12229663	0	12229663	intron	0	0.27	5E-9	8.301029995663981		    .10	[0.066-0.132] unit increase	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	14q23.1	14	60437039	SIX6	C14orf39			317761			rs1254319-A	rs1254319	0	1254319	missense	0	0.32	1E-8	8		    .09	[0.059-0.117] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	16p13.3	16	7409682	RBFOX1	RBFOX1			54715			rs17648524-C	rs17648524	0	17648524	intron	0	0.36	6E-10	9.221848749616356		    .12	[0.081-0.155] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	17p12	17	11504584	SHISA6	SHISA6			388336			rs2969180-A	rs2969180	0	2969180	intron	0	0.36	7E-11	10.15490195998574		    .10	[0.072-0.13] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	20p12.3	20	6781118	BMP2	BMP2 - MIR8062	650	102465865		         .86	      590.49	rs235770-T	rs235770	0	235770	Intergenic	1	0.39	2E-8	7.698970004336018		    .09	[0.058-0.12] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
06/06/2013	23396134	Verhoeven VJ	02/10/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23396134	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 578 Han Chinese ancestry individuals, 3,417 Singaporean Chinese ancestry individuals, 2,273 Singaporean Malay ancestry individuals, 2,108 Singaporean Indian ancestry individuals	NA	2q37.1	2	232515231	PRSS56	ECEL1 - PRSS56	9427	646960		       27.41	        5.23	rs1656404-A	rs1656404	0	1656404	Intergenic	1	0.21	8E-11	10.09691001300805		    .15	[0.11-0.20] unit decrease	Illumina & Affymetrix [2.5 million] (imputed)	N
05/14/2013	23392654	Lewis JP	02/07/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23392654 	Genetic variation in PEAR1 is associated with platelet aggregation and cardiovascular outcomes.	Response to antiplatelet therapy	565 Amish individuals	710 European ancestry individuals, 237 African American/Afro-Caribbean individuals, 276 Hispanic individuals, 4 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [400,230]	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	5q13.3	5	77234524	PDE8B	PDE8B			8622			rs6885099-A 	rs6885099	0	6885099	intron	0	0.594	2E-26	25.69897000433602	(TSH)	    .14	[0.12-0.16] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6q27	6	165632995	PDE10A	PDE10A			10846			rs753760-C 	rs753760	0	753760	intron	0	0.691	1E-24	24	(TSH)	    .10	[0.08-0.12] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p36.13	1	19514680	CAPZB	CAPZB - MINOS1	832	440574		       29.04	       82.30	rs10799824-A	rs10799824	0	10799824	Intergenic	1	0.161	4E-21	20.39794000867204	(TSH)	    .11	[0.089-0.137] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	16q23.2	16	79715456	MAF,LOC440389	MAF - DYNLRB2	4094	83657		      114.73	      825.50	rs3813582-T 	rs3813582	0	3813582	Intergenic	1	0.674	8E-18	17.09691001300806	(TSH)	    .08	[0.062-0.102] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6p21.1	6	43844025	VEGFA	TRNAI25			100189401			rs9472138-T 	rs9472138	0	9472138		0	0.285	7E-16	15.15490195998574	(TSH)	    .08	[0.059-0.099] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6p21.1	6	43937043	VEGFA	LOC100132354			100132354			rs11755845-T	rs11755845 	0	11755845	ncRNA	0	0.266	2E-10	9.698970004336017	(TSH)	    .07	[0.045-0.085] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	4q31.23	4	148748354	NR3C2	ATP5LP4 - DCLK2	100130396	166614		       44.52	     1329.92	rs10032216-T 	rs10032216	0	10032216	Intergenic	1	0.781	9E-16	15.04575749056067	(TSH)	    .09	[0.065-0.109] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	2q35	2	216760800	IGFBP5	IGFBP5 - RPL31P14	3488	100129310		       65.25	       24.94	rs13015993-A 	rs13015993	0	13015993	Intergenic	1	0.736	3E-15	14.52287874528034	(TSH)	    .08	[0.058-0.098] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	17q24.3	17	72131395	SOX9	SOX9 - LINC00673	6662	100499467		        4.98	      271.93	rs9915657-T 	rs9915657	0	9915657	Intergenic	1	0.541	8E-13	12.09691001300806	(TSH)	    .06	[0.046-0.082] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p31.3	1	61154824	NFIA	NFIA			4774			rs334699-A 	rs334699	0	334699	intron	0	0.052	5E-12	11.30102999566398	(TSH)	    .14	[0.1-0.182] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	15q21.2	15	49454167	FGF7	FGF7;FAM227B			2252;196951			rs10519227-A 	rs10519227	0	10519227	intron;intron	0	0.245	1E-11	11	(TSH)	    .07	[0.05-0.094] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	11p11.2	11	45206016	PRDM11	PRDM11			56981			rs17723470-T	rs17723470	0	17723470	intron	0	0.279	9E-11	10.04575749056067	(TSH)	    .07	[0.045-0.085] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	15q26.1	15	88575873	MIR1179  	DET1 - MIR1179	55070	100302235		       29.17	       32.23	rs17776563-A 	rs17776563	0	17776563	Intergenic	1	0.322	3E-10	9.522878745280336	(TSH)	    .06	[0.04-0.08] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	19p13.2	19	7223837	INSR	INSR;LOC100996405			3643;100996405			rs4804416-T 	rs4804416	0	4804416	intron;nearGene-3	0	0.569	3E-10	9.522878745280336	(TSH)	    .06	[0.039-0.075] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q34.2	9	133263862	ABO	ABO			28			rs657152-A 	rs657152	0	657152	intron	0	0.343	4E-10	9.397940008672037	(TSH)	    .06	[0.04-0.076] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	14q32.12	14	93129246	ITPK1	ITPK1-AS1 - CYB5AP3	319085	1531		       57.09	        8.71	rs11624776-A 	rs11624776	0	11624776	Intergenic	1	0.66	2E-9	8.698970004336019	(TSH)	    .06	[0.042-0.086] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	8p12	8	32558756	NRG1	NRG1			3084			rs7825175-A 	rs7825175	0	7825175	intron	0	0.21	3E-9	8.522878745280337	(TSH)	    .07	[0.044-0.088] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	14q13.2	14	36104812	MBIP	LINC00609			101101773			rs1537424-T 	rs1537424	0	1537424	intron	0	0.608	1E-8	8	(TSH)	    .05	[0.034-0.07] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6q24.3	6	148200156	SASH1 	SAMD5 - SASH1	389432	23328		      630.14	       11.96	rs9497965-T 	rs9497965	0	9497965	Intergenic	1	0.415	2E-8	7.698970004336018	(TSH)	    .05	[0.033-0.069] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9p24.2	9	4267209	GLIS3 	GLIS3			169792			rs1571583-A 	rs1571583	0	1571583	intron	0	0.249	3E-8	7.522878745280337	(TSH)	    .06	[0.037-0.077] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p32.3	1	53909897	DIO1	DIO1			1733			rs2235544-A 	rs2235544	0	2235544	intron	0	0.51	8E-32	31.09691001300805	(FT4)	    .14	[0.11-0.16] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q34.3	9	136197833	LHX3 	LHX3			8022			rs7860634-A 	rs7860634	0	7860634	intron	0	0.53	2E-14	13.69897000433602	(FT4)	    .10	[0.077-0.127] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q22.33	9	97829181	FOXE1	LOC101928337			101928337			rs7045138-T	rs7045138	0	7045138	intron	0	0.553	2E-11	10.69897000433602	(FT4)	    .10	[0.069-0.127] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	4q33	4	170132368	AADAT 	AADAT - HSP90AA6P	51166	441051		       41.84	      472.35	rs11726248-A 	rs11726248	0	11726248	Intergenic	1	0.106	5E-9	8.301029995663981	(FT4)	    .11	[0.074-0.148] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	16q12.2	16	55570216	LPCAT2,CAPNS2	LPCAT2			54947			rs6499766-A 	rs6499766	0	6499766	intron	0	0.478	1E-6	5.999999999999999	(FT4)	    .06	[0.032-0.08] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	5q13.3	5	77234524	PDE8B	PDE8B			8622			rs6885099-A 	rs6885099	0	6885099	intron	0	0.594	6E-24	23.22184874961635	(TSH - Females)	    .12	[0.096-0.144] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	5q13.3	5	77234524	PDE8B	PDE8B			8622			rs6885099-A 	rs6885099	0	6885099	intron	0	0.594	3E-38	37.52287874528033	(TSH - Males)	    .17	[0.14-0.19] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6q27	6	165632995	PDE10A	PDE10A			10846			rs753760-C 	rs753760	0	753760	intron	0	0.691	5E-9	8.301029995663981	(TSH - Females)	    .08	[0.051-0.101] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6q27	6	165632995	PDE10A	PDE10A			10846			rs753760-C 	rs753760	0	753760	intron	0	0.691	6E-20	19.22184874961636	(TSH - Males)	    .13	[0.1-0.16] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p36.13	1	19514680	CAPZB	CAPZB - MINOS1	832	440574		       29.04	       82.30	rs10799824-A	rs10799824	0	10799824	Intergenic	1	0.161	3E-14	13.52287874528034	(TSH - Females)	    .12	[0.092-0.154] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p36.13	1	19514680	CAPZB	CAPZB - MINOS1	832	440574		       29.04	       82.30	rs10799824-A	rs10799824	0	10799824	Intergenic	1	0.161	1E-8	8	(TSH - Males)	    .10	[0.066-0.132] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	16q23.2	16	79715456	MAF,LOC440389	MAF - DYNLRB2	4094	83657		      114.73	      825.50	rs3813582-T 	rs3813582	0	3813582	Intergenic	1	0.674	6E-17	16.22184874961636	(TSH - Males)	    .12	[0.088-0.142] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6p21.1	6	43844025	VEGFA	TRNAI25			100189401			rs9472138-T 	rs9472138	0	9472138		0	0.285	6E-12	11.22184874961635	(TSH - Females)	    .09	[0.065-0.115] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6p21.1	6	43844025	VEGFA	TRNAI25			100189401			rs9472138-T 	rs9472138	0	9472138		0	0.285	5E-6	5.301029995663981	(TSH - Males)	    .07	[0.038-0.092] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6p21.1	6	43937043	VEGFA	LOC100132354			100132354			rs11755845-T	rs11755845 	0	11755845	ncRNA	0	0.266	3E-7	6.522878745280337	(TSH - Males)	    .08	[0.047-0.105] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	4q31.23	4	148748354	NR3C2	ATP5LP4 - DCLK2	100130396	166614		       44.52	     1329.92	rs10032216-T 	rs10032216	0	10032216	Intergenic	1	0.781	2E-13	12.69897000433602	(TSH - Females)	    .11	[0.079-0.133] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	2q35	2	216760800	IGFBP5	IGFBP5 - RPL31P14	3488	100129310		       65.25	       24.94	rs13015993-A 	rs13015993	0	13015993	Intergenic	1	0.736	2E-7	6.698970004336019	(TSH - Females)	    .07	[0.044-0.094] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	2q35	2	216760800	IGFBP5	IGFBP5 - RPL31P14	3488	100129310		       65.25	       24.94	rs13015993-A 	rs13015993	0	13015993	Intergenic	1	0.736	8E-11	10.09691001300805	(TSH - Males)	    .10	[0.066-0.124] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	17q24.3	17	72131395	SOX9	SOX9 - LINC00673	6662	100499467		        4.98	      271.93	rs9915657-T 	rs9915657	0	9915657	Intergenic	1	0.541	1E-7	7	(TSH - Females)	    .06	[0.039-0.087] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	17q24.3	17	72131395	SOX9	SOX9 - LINC00673	6662	100499467		        4.98	      271.93	rs9915657-T 	rs9915657	0	9915657	Intergenic	1	0.541	2E-7	6.698970004336019	(TSH - Males)	    .07	[0.043-0.093] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p31.3	1	61154824	NFIA	NFIA			4774			rs334699-A 	rs334699	0	334699	intron	0	0.052	2E-7	6.698970004336019	(TSH - Females)	    .14	[0.09-0.196] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p31.3	1	61154824	NFIA	NFIA			4774			rs334699-A 	rs334699	0	334699	intron	0	0.052	6E-7	6.221848749616355	(TSH - Males)	    .15	[0.09-0.208] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	15q21.2	15	49454167	FGF7	FGF7;FAM227B			2252;196951			rs10519227-A 	rs10519227	0	10519227	intron;intron	0	0.245	6E-10	9.221848749616356	(TSH - Males)	    .10	[0.066-0.124] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	11p11.2	11	45206016	PRDM11	PRDM11			56981			rs17723470-T	rs17723470	0	17723470	intron	0	0.279	3E-7	6.522878745280337	(TSH - Females)	    .07	[0.044-0.094] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	15q26.1	15	88575873	MIR1179  	DET1 - MIR1179	55070	100302235		       29.17	       32.23	rs17776563-A 	rs17776563	0	17776563	Intergenic	1	0.322	6E-7	6.221848749616355	(TSH - Males)	    .07	[0.042-0.096] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	19p13.2	19	7223837	INSR	INSR;LOC100996405			3643;100996405			rs4804416-T 	rs4804416	0	4804416	intron;nearGene-3	0	0.569	2E-6	5.698970004336018	(TSH - Females)	    .06	[0.034-0.082] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q34.2	9	133263862	ABO	ABO			28			rs657152-A 	rs657152	0	657152	intron	0	0.343	1E-6	5.999999999999999	(TSH - Males)	    .07	[0.04-0.094] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	14q32.12	14	93129246	ITPK1	ITPK1-AS1 - CYB5AP3	319085	1531		       57.09	        8.71	rs11624776-A 	rs11624776	0	11624776	Intergenic	1	0.66	3E-6	5.522878745280337	(TSH - Males)	    .07	[0.04-0.098] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	8p12	8	32558756	NRG1	NRG1			3084			rs7825175-A 	rs7825175	0	7825175	intron	0	0.21	2E-8	7.698970004336018	(TSH - Females)	    .08	[0.055-0.113] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	6q24.3	6	148200156	SASH1 	SAMD5 - SASH1	389432	23328		      630.14	       11.96	rs9497965-T 	rs9497965	0	9497965	Intergenic	1	0.415	3E-8	7.522878745280337	(TSH - Females)	    .07	[0.043-0.091] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9p24.2	9	4267209	GLIS3 	GLIS3			169792			rs1571583-A 	rs1571583	0	1571583	intron	0	0.249	1E-6	5.999999999999999	(TSH - Males)	    .07	[0.045-0.103] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p32.3	1	53909897	DIO1	DIO1			1733			rs2235544-A 	rs2235544	0	2235544	intron	0	0.51	3E-18	17.52287874528034	(FT4-Females)	    .13	[0.1-0.16] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	1p32.3	1	53909897	DIO1	DIO1			1733			rs2235544-A 	rs2235544	0	2235544	intron	0	0.51	5E-15	14.30102999566398	(FT4-Males)	    .14	[0.11-0.18] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q34.3	9	136197833	LHX3 	LHX3			8022			rs7860634-A 	rs7860634	0	7860634	intron	0	0.53	5E-8	7.30102999566398	(FT4-Females)	    .10	[0.063-0.133] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q34.3	9	136197833	LHX3 	LHX3			8022			rs7860634-A 	rs7860634	0	7860634	intron	0	0.53	2E-8	7.698970004336018	(FT4-Males)	    .11	[0.071-0.145] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q22.33	9	97829181	FOXE1	LOC101928337			101928337			rs7045138-T	rs7045138	0	7045138	intron	0	0.553	3E-6	5.522878745280337	(FT4-Females)	    .09	[0.054-0.132] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	9q22.33	9	97829181	FOXE1	LOC101928337			101928337			rs7045138-T	rs7045138	0	7045138	intron	0	0.553	5E-7	6.30102999566398	(FT4-Males)	    .11	[0.064-0.146] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	4q33	4	170132368	AADAT 	AADAT - HSP90AA6P	51166	441051		       41.84	      472.35	rs11726248-A 	rs11726248	0	11726248	Intergenic	1	0.106	4E-7	6.397940008672037	(FT4-Females)	    .12	[0.076-0.17] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	16q12.2	16	55570216	LPCAT2,CAPNS2	LPCAT2			54947			rs6499766-A 	rs6499766	0	6499766	intron	0	0.478	5E-8	7.30102999566398	(FT4-Males)	    .10	[0.064-0.134] unit increase	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23408906	Porcu E	02/07/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23408906	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 12,289 European ancestry females, up to 9,019 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males, 2,170 Sardinian females, 1,917 Sardinian males	NR	18q22.3	18	73500517	NETO1,FBXO15	MIR548AV - FBXO15	100847083	201456		      647.14	      572.74	rs7240777-A	rs7240777	0	7240777	Intergenic	1	0.5632	3E-8	7.522878745280337	(FT4-Females)	    .08	[0.054-0.112] unit decrease	Illumina, Affymetrix [~2.5 Million] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	1q32.3	1	211518364	RD3	RD3 - SLC30A1	343035	7779		       25.45	       56.68	rs7553035-T	rs7553035	0	7553035	Intergenic	1	0.07	4E-6	5.397940008672037		    .37	[0.21-0.53] unit increase	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	4q28.3	4	137233658	PCDH18	TERF1P3 - SERF1AP1	646316	100131921		      877.32	       67.35	rs10004839-T	rs10004839	0	10004839	Intergenic	1	0.02	5E-6	5.301029995663981		    .57	[0.32-0.82] unit increase	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	6p22.1	6	29384007	OR12D3	TRNAI25			100189401			rs9378134-A	rs9378134	0	9378134		0	0.04	3E-6	5.522878745280337		    .49	[0.29-0.69] unit increase	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	7p21.1	7	18389298	HDAC9	HDAC9			9734			rs12155400-A	rs12155400	0	12155400	intron	0	0.98	8E-6	5.096910013008055		    .73	[0.42-1.04] unit decrease	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	8q12.3	8	64817650	CYP7B1	CYP7B1 - RPL31P41	9420	100271201		       18.86	      337.76	rs6472155-A	rs6472155	0	6472155	Intergenic	1	0.51	4E-6	5.397940008672037		    .23	[0.13-0.33] unit decrease	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	8q24.21	8	129664393	MLZE	MIR3686 - GSDMC	100500839	56169		      180.25	       83.80	rs9918807-T	rs9918807	0	9918807	Intergenic	1	0.94	5E-6	5.301029995663981		    .47	[0.27-0.67] unit decrease	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	10q23.1	10	81429197	NRG3	RPA2P2 - NRG3	389990	10718		      291.87	      446.12	rs1329201-T	rs1329201	0	1329201	Intergenic	1	0.34	8E-6	5.096910013008055		    .22	[0.12-0.32] unit decrease	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	11q14.1	11	78948100	ODZ4	TENM4			26011			rs11826937-A	rs11826937	0	11826937	intron	0	0.97	3E-6	5.522878745280337		    .60	[0.35-0.85] unit decrease	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	12p11.22	12	27855836	KLHDC5	KLHL42 - PTHLH	57542	5744		       52.80	      102.25	rs258401-T	rs258401	0	258401	Intergenic	1	0.26	6E-6	5.221848749616356		    .24	[0.14-0.34] unit increase	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	20q11.23	20	37439987	SRC	SRC - RPL7AP14	6714	140756		       34.56	        4.69	rs17194885-A	rs17194885	0	17194885	Intergenic	1	0.96	4E-6	5.397940008672037		    .61	[0.36-0.86] unit decrease	Illumina [2,675,979] (Imputed)	N
05/14/2013	23393555	Jensen RA	02/05/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23393555	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NR	22q11.21	22	20443002	KLHL22	KLHL22			84861			rs5763911-T	rs5763911	0	5763911	intron	0	0.96	6E-6	5.221848749616356		    .52	[0.3-0.74] unit decrease	Illumina [2,675,979] (Imputed)	N
05/09/2013	23381795	Verweij N	02/04/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23381795 	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels 	3,444 Euorpean ancestry individuals	3,230 European ancestry individuals	1q32.2	1	210995417	KCNH1	KCNH1			3756			rs1501550-A	rs1501550	0	1501550	intron	0	0.21	2E-6	5.698970004336018	(ADM)	    .01	[0.0071-0.0149] nmol/l decrease	Illumina [2,269,099] (Imputed)	N
05/09/2013	23381795	Verweij N	02/04/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23381795 	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels 	3,444 Euorpean ancestry individuals	3,230 European ancestry individuals	4q35.2	4	186227233	KLKB1	KLKB1			3818			rs4253238-C	rs4253238	0	4253238	nearGene-5	0	0.46	4E-52	51.39794000867203	(ADM)	    .03	[0.027-0.035] nmol/l increase	Illumina [2,269,099] (Imputed)	N
05/09/2013	23381795	Verweij N	02/04/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23381795 	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels 	3,444 Euorpean ancestry individuals	3,230 European ancestry individuals	4q35.2	4	186227233	KLKB1	KLKB1			3818			rs4253238-C	rs4253238	0	4253238	nearGene-5	0	0.46	1E-122	122	(ET)	   5.14	[4.71-5.56] pmol/l increase	Illumina [2,269,099] (Imputed)	N
05/09/2013	23381795	Verweij N	02/04/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23381795 	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels 	3,444 Euorpean ancestry individuals	3,230 European ancestry individuals	5q35.3	5	177415473	F12	F12 - GRK6	2161	2870		        5.90	       11.02	rs2731672-T	rs2731672	0	2731672	Intergenic	1	0.24	6E-24	23.22184874961635	(ADM)	    .02	[0.018-0.026] nmol/l increase	Illumina [2,269,099] (Imputed)	N
05/09/2013	23381795	Verweij N	02/04/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23381795 	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels 	3,444 Euorpean ancestry individuals	3,230 European ancestry individuals	5q35.3	5	177415473	F12	F12 - GRK6	2161	2870		        5.90	       11.02	rs2731672-T	rs2731672	0	2731672	Intergenic	1	0.24	1E-67	67	(ET)	   4.61	[4.09-5.13] pmol/l increase	Illumina [2,269,099] (Imputed)	N
05/09/2013	23381795	Verweij N	02/04/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23381795 	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels 	3,444 Euorpean ancestry individuals	3,230 European ancestry individuals	6p24.1	6	12296022	EDN1	EDN1;LOC101928281			1906;101928281			rs5370-T	rs5370	0	5370	missense;ncRNA	0	0.22	1E-27	27	(ET)	   2.96	[2.42-3.49] pmol/l increase	Illumina [2,269,099] (Imputed)	N
05/09/2013	23381795	Verweij N	02/04/2013	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/23381795 	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels 	3,444 Euorpean ancestry individuals	3,230 European ancestry individuals	11p15.4	11	10346572	ADM	CAND1.11			100130460			rs2957692-G	rs2957692	0	2957692	intron	0	0.40	1E-12	12	(ADM)	    .02	[0.011-0.019] nmol/l decrease	Illumina [2,269,099] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	1p34.3	1	36696751	GRIK3	FTLP18 - GRIK3	100462786	2899		       65.94	       98.78	rs589249-G	rs589249	0	589249	Intergenic	1	0.64	3E-7	6.522878745280337		   1.20	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	6	32203298	NOTCH4	NOTCH4			4855			rs3132935-?	rs3132935	0	3132935	intron	0	0.82	3E-7	6.522878745280337		   1.25	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	10q24.32	10	102902701	AS3MT, CNNM2, NT5C2	RPL22P17 - CNNM2	100271289	54805		       14.49	       15.62	rs7897654-T	rs7897654	0	7897654	Intergenic	1	0.30	3E-7	6.522878745280337		   1.20	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	22q13.33	22	49824963	BRD1	BRD1			23774			rs138880-C	rs138880	0	138880	intron	0	0.78	2E-7	6.698970004336019		   1.10	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	1q25.2	1	177753772	SEC16B	BRINP2 - SEC16B	57795	89866		      471.35	      175.34	rs12140439-C	rs12140439	0	12140439	Intergenic	1	0.31	1E-6	5.999999999999999	(EA)	   1.30	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	2p16.3	2	47820196	FBXO11	FBXO11			80204			rs4381823-?	rs4381823	0	4381823	intron	0	0.93	6E-6	5.221848749616356	(EA)	   1.43	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	3q13.33	3	119365484	ARHGAP31	ARHGAP31			57514			rs17203055-?	rs17203055	0	17203055	intron	0	0.87	5E-6	5.301029995663981	(EA)	   1.43	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p22.1	6	27310241	POM121L2	POM121L2			94026			rs16897515-C	rs16897515	0	16897515	missense	0	0.16	4E-7	6.397940008672037	(EA)	   1.30	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.32	6	32203298	NOTCH4	NOTCH4			4855			rs3132935-?	rs3132935	0	3132935	intron	0	0.82	5E-7	6.30102999566398	(EA)	   1.25	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6q22.31	6	124021518	NKAIN2	NKAIN2			154215			rs6917824-G	rs6917824L	0	6917824	intron	0	0.83	4E-6	5.397940008672037	(EA)	   1.30	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	18q21.2	18	55282426	TCF4	TCF4			6925			rs1261117-T	rs1261117	0	1261117	intron	0	0.06	3E-10	9.522878745280336	(EA)	   1.60	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	19q13.2	19	39738769	CLC, LGALS17A	CLC			1178			rs12611334-G	rs12611334	0	12611334	nearGene-5	0	0.70	2E-6	5.698970004336018	(EA)	   1.40	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	11q24.2	11	125443703	FEZ1	PKNOX2 - FEZ1	63876	9638		       10.31	        2.04	rs7930295-G	rs7930295	0	7930295	Intergenic	1	0.86	3E-6	5.522878745280337	(EA)	   1.30	[NR] 	NR [1,085,772] (Imputed)	N
05/08/2013	23894747	Aberg KA	02/01/2013	JAMA Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23894747	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	6p21.33	6	31635190	PRRC2A, BAG6	PRRC2A			7916			rs1046089-G	rs1046089	0	1046089	missense	0	0.34	4E-6	5.397940008672037	(EA)	   1.30	[NR] 	NR [1,085,772] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5p15.1	5	16812529	MYO10	MYO10			4651			rs17651119-C	rs17651119	0	17651119	intron	0	0.99	2E-8	7.698970004336018	(% improvement - 12 weeks)	   3.18	[2.77-3.59] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	19q13.11	19	33829949	KCTD15	KCTD15 - RPS4XP20	79047	100271386		       14.19	      192.62	rs2546057-A	rs2546057	0	2546057	Intergenic	1	0.52	3E-7	6.522878745280337	(% improvement - 12 weeks)	   1.18	[1.12-1.24] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	1q42.13	1	227480089	Intergenic	BTF3P9 - TUBB8P10	503543	391171		       45.48	       12.76	rs12410462-A	rs12410462	0	12410462	Intergenic	1	0.122	4E-7	6.397940008672037	(% improvement - 12 weeks)	   1.26	[1.16-1.36] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	19q13.42	19	55754298	RFPL4A	NLRP9 - RFPL4A	338321	342931		       15.90	        4.84	rs17634917-A	rs17634917	0	17634917	Intergenic	1	0.94	3E-6	5.522878745280337	(% improvement - 12 weeks)	   1.37	[1.23-1.51] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	18p11.21	18	10923810	FAM38B	PIEZO2			63895			rs264272-G	rs264272	0	264272	intron	0	0.52	4E-6	5.397940008672037	(% improvement - 12 weeks)	   1.14	[1.09-1.2] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	13q31.1	13	79594869	NDFIP2	NDFIP2 - LINC00382	54602	101927195		       38.79	      277.72	rs9601248-C	rs9601248	0	9601248	Intergenic	1	0.498	2E-6	5.698970004336018	(remission - 12 weeks)	   1.38	[1.25-1.52] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	4q28.1	4	124344158	Intergenic	RPL21P50 - TECRP2	100271167	391696		      597.89	      118.60	rs2125000-T	rs2125000	0	2125000	Intergenic	1	0.307	3E-6	5.522878745280337	(remission - 12 weeks)	   1.43	[1.27-1.58] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5q32	5	149657413	FLJ41603	ARHGEF37 - PPARGC1B	389337	133522		       22.45	       72.84	rs17710780-T	rs17710780	0	17710780	Intergenic	1	0.86	4E-6	5.397940008672037	(remission - 12 weeks)	   1.66	[1.45-1.88] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	6p22.3	6	23840904	Intergenic	RPL6P18 - SPTLC1P2	100131805	100874498		      737.33	       15.66	rs9466930-C	rs9466930	0	9466930	Intergenic	1	0.215	4E-6	5.397940008672037	(remission - 12 weeks)	   1.50	[1.32-1.68] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	12p13.1	12	13488772	GRIN2B	RNA5SP353 - GRIN2B	100873613	2904		       47.77	       71.98	rs1457614-C	rs1457614	0	1457614	Intergenic	1	0.181	8E-6	5.096910013008055	(remission - 12 weeks)	   1.47	[1.29-1.64] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	15q23	15	68304789	ITGA11	ITGA11			22801			rs7174755-T	rs7174755	0	7174755	intron	0	0.63	9E-7	6.045757490560675	(% improvement - 2 weeks)	   1.17	[1.11-1.23] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5q33.3	5	159580770	MIR548D2	RNU4ATAC2P - ADRA1B	100873889	147		      262.60	      335.96	rs10065906-C	rs10065906	0	10065906	Intergenic	1	0.332	2E-6	5.698970004336018	(% improvement - 2 weeks)	   1.17	[1.11-1.22] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5q23.2	5	124496959	Intergenic	HMGB1P29 - ZNF608	100873892	57507		      275.88	      139.95	rs12513663-T	rs12513663	0	12513663	Intergenic	1	0.268	2E-6	5.698970004336018	(% improvement - 2 weeks)	   1.18	[1.11-1.26] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	3q28	3	192100853	FGF12	PYDC2 - FGF12	152138	2257		      639.40	       38.39	rs4585146-G	rs4585146	0	4585146	Intergenic	1	0.65	6E-6	5.221848749616356	(% improvement - 2 weeks)	   1.16	[1.11-1.22] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	15q13.3	15	33212866	FMN1	HNRNPA1P71 - TMCO5B	100421433	100652857		      199.80	       23.61	rs974379-C	rs974379	0	974379	Intergenic	1	0.075	8E-6	5.096910013008055	(% improvement - 2 weeks)	   1.29	[1.17-1.4] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	9q34.13	9	132757106	C9orf98	AK8			158067			rs12552369-A	rs12552369	0	12552369	intron	0	0.494	8E-6	5.096910013008055	(% improvement - 2 weeks)	   1.16	[1.1-1.21] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	6p21.1	6	44097574	MRPL14	TRNAI25			100189401			rs7742824-A	rs7742824	0	7742824		0	0.224	9E-6	5.045757490560675	(% improvement - 2 weeks)	   1.19	[1.11-1.26] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5q33.3	5	159580770	Intergenic	RNU4ATAC2P - ADRA1B	100873889	147		      262.60	      335.96	rs10065906-C	rs10065906	0	10065906	Intergenic	1	0.308	5E-8	7.30102999566398	(partial response - 2 weeks)	   1.47	[1.33-1.61] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	2q32.3	2	192877447	Intergenic	RPS17P8 - GLULP6	100271070	343981		      103.02	     1251.85	rs10174573-T	rs10174573	0	10174573	Intergenic	1	0.57	2E-6	5.698970004336018	(partial response - 2 weeks)	   1.56	[1.39-1.74] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5q31.3	5	141831188	PCDH1	ARAP3 - PCDH1	64411	5097		      148.96	       21.90	rs166040-G	rs166040	0	166040	Intergenic	1	0.87	5E-6	5.301029995663981	(partial response - 2 weeks)	   1.61	[1.41-1.8] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	12p12.3	12	17509301	Intergenic	TIMM17BP1 - MIR3974	390298	100616279		      108.11	      164.00	rs1706631-T	rs1706631	0	1706631	Intergenic	1	0.408	6E-6	5.221848749616356	(partial response - 2 weeks)	   1.35	[1.22-1.49] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	4p15.2	4	24739335	SOD3	ATP5LP3 - SOD3	53409	6649		       80.91	       56.13	rs12500612-G	rs12500612	0	12500612	Intergenic	1	0.85	7E-6	5.154901959985742	(partial response - 2 weeks)	   1.77	[1.51-2.02] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	13q14.11	13	43260134	ENOX1	ENOX1			55068			rs17538444-T	rs17538444	0	17538444	intron	0	0.0698752	4E-7	6.397940008672037	(% improvement - SSRI treated - 12 weeks)	    .39	[0.24-0.54] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	22q12.3	22	34427837	ENOX1	LARGE-AS1 - ISX	100506195	91464		      677.02	      638.30	rs1034394-G	rs1034394	0	1034394	Intergenic	1	0.3390146	2E-6	5.698970004336018	(% improvement - SSRI treated - 12 weeks)	    .21	[0.12-0.3] unit increase	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	18p11.21	18	10923810	FAM38B	PIEZO2			63895			rs264272-T	rs264272	0	264272	intron	0	0.4874733	3E-6	5.522878745280337	(% improvement - SSRI treated - 12 weeks)	    .17	[0.099-0.243] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	15q26.3	15	99759034	LYSMD4,C15orf51	LYSMD4 - DNM1P46	145748	196968		       25.59	       31.12	rs6598266-A	rs6598266	0	6598266	Intergenic	1	0.1427493	3E-6	5.522878745280337	(% improvement - SSRI treated - 12 weeks)	    .25	[0.15-0.36] unit increase	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	19q13.11	19	33830353	CHST8,KCTD15	KCTD15 - RPS4XP20	79047	100271386		       14.59	      192.21	rs398426-T	rs398426	0	398426	Intergenic	1	0.2588456	5E-6	5.301029995663981	(% improvement - SSRI treated - 12 weeks)	    .25	[0.14-0.36] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	19q13.42	19	55754298	EPN1,NLRP9,RFPL4A,NLRP11	NLRP9 - RFPL4A	338321	342931		       15.90	        4.84	rs17634917-G	rs17634917	0	17634917	Intergenic	1	0.0573945	6E-6	5.221848749616356	(% improvement - SSRI treated - 12 weeks)	    .38	[0.21-0.54] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	4q28.1	4	124494379	Intergenic	TECRP2 - ANKRD50	391696	57182		       30.52	      169.67	rs6534441-C	rs6534441	0	6534441	Intergenic	1	0.3328325	7E-6	5.154901959985742	(% improvement - SSRI treated - 12 weeks)	    .18	[0.1-0.26] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	13q31.1	13	80783536	Intergenic	PWWP2AP1 - ARF4P4	100129459	100129023		      126.53	       98.03	rs11149178-A	rs11149178	0	11149178	Intergenic	1	0.3560899	7E-6	5.154901959985742	(% improvement - SSRI treated - 12 weeks)	    .18	[0.1-0.26] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	12p13.32	12	4307138	CCND2,C12orf5	CCND2 - C12orf5	894	57103		        1.78	       14.06	rs4625554-G	rs4625554	0	4625554	Intergenic	1	0.2996789	9E-6	5.045757490560675	(% improvement - SSRI treated - 12 weeks)	    .19	[0.11-0.28] unit increase	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	7q11.22	7	71008019	WBSCR17	AUTS2 - WBSCR17	26053	64409		      215.12	      124.52	rs1525293-C	rs1525293	0	1525293	Intergenic	1	0.66	2E-6	5.698970004336018	(remission - SSRI treated - 12 weeks)	   1.70	[1.48-1.92] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	9p24.3	9	955794	DMRT1,DMRT3	DMRT1			1761			rs364477-C	rs364477	0	364477	intron	0	0.2154931	4E-6	5.397940008672037	(remission - SSRI treated - 12 weeks)	   1.69	[1.47-1.92] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	14q23.2	14	62855629	KCNH5	KCNH5			27133			rs8012941-G	rs8012941	0	8012941	intron	0	0.4975174	4E-6	5.397940008672037	(remission - SSRI treated - 12 weeks)	   1.54	[1.35-1.72] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	12p13.1	12	13367062	C12orf36	EMP1 - C12orf36	2012	283422		      150.29	        3.61	rs11055387-C	rs11055387	0	11055387	Intergenic	1	0.0895145	8E-6	5.096910013008055	(remission - SSRI treated - 12 weeks)	   2.19	[1.84-2.53] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	1q41	1	217027541	ESRRG	ESRRG			2104			rs2377360-G	rs2377360	0	2377360	intron	0	0.2632403	9E-6	5.045757490560675	(remission - SSRI treated - 12 weeks)	   1.60	[1.39-1.81] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5p14.1	5	27611324	Intergenic	LINC01021 - LSP1P3	643401	729862		      114.92	     1315.55	rs12054895-T	rs12054895	0	12054895	Intergenic	1	0.275456	3E-8	7.522878745280337	(% improvement - SSRI treated - 2 weeks)	    .24	[0.16-0.33] unit increase	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	15q23	15	68304789	PIAS1,CALML4,CLN6,FEM1B,ITGA11	ITGA11			22801			rs7174755-C	rs7174755	0	7174755	intron	0	0.3690476	3E-7	6.522878745280337	(% improvement - SSRI treated - 2 weeks)	    .20	[0.13-0.28] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	3q28	3	192100853	FGF12	PYDC2 - FGF12	152138	2257		      639.40	       38.39	rs4585146-A	rs4585146	0	4585146	Intergenic	1	0.362271	3E-7	6.522878745280337	(% improvement - SSRI treated - 2 weeks)	    .22	[0.14-0.31] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	19q13.11	19	32598525	PDCD5,ANKRD27,RGS9BP,NUDT19	ANKRD27			84079			rs17692896-A	rs17692896	0	17692896	intron	0	0.0739179	7E-7	6.154901959985743	(% improvement - SSRI treated - 2 weeks)	    .44	[0.27-0.61] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	6p22.3	6	16255812	MYLIP,GMPR,ATXN1	GMPR			2766			rs10484358-T	rs10484358	0	10484358	intron	0	0.0827112	1E-6	5.999999999999999	(% improvement - SSRI treated - 2 weeks)	    .43	[0.25-0.6] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5q14.3	5	87738535	RASA1,CCNH	CCNH - TMEM161B	902	153396		      325.50	      451.10	rs1673101-A	rs1673101	0	1673101	Intergenic	1	0.3312154	4E-6	5.397940008672037	(% improvement - SSRI treated - 2 weeks)	    .19	[0.11-0.27] unit decrease	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	1p36.32	1	5294784	Intergenic	AJAP1 - MIR4417	55966	100616489		      510.99	      269.29	rs912988-T	rs912988	0	912988	Intergenic	1	0.3630374	6E-6	5.221848749616356	(% improvement - SSRI treated - 2 weeks)	    .18	[0.1-0.26] unit increase	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	3q29	3	193865921	Intergenic	OPA1-AS1 - DPPA2P3	100873941	100128023		      238.59	      127.17	rs604222-A	rs604222	0	604222	Intergenic	1	0.1915251	7E-6	5.154901959985742	(% improvement - SSRI treated - 2 weeks)	    .22	[0.12-0.31] unit increase	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	3q25.33	3	159926508	SCHIP1,IL12A	IL12A-AS1			101928376			rs6799788-G	rs6799788	0	6799788	intron	0	0.2476976	1E-6	5.999999999999999	(partial response - SSRI treated - 2 weeks)	   1.63	[1.43-1.82] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	5q33.3	5	159580770	MIR548D2	RNU4ATAC2P - ADRA1B	100873889	147		      262.60	      335.96	rs10065906-C	rs10065906	0	10065906	Intergenic	1	0.3622876	2E-6	5.698970004336018	(partial response - SSRI treated - 2 weeks)	   1.53	[1.36-1.7] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	4q21.22	4	81541443	RASGEF1B	RASGEF1B - COX5BP1	153020	1330		       69.52	      378.48	rs1822818-T	rs1822818	0	1822818	Intergenic	1	0.87	6E-6	5.221848749616356	(partial response - SSRI treated - 2 weeks)	   1.77	[1.53-2.02] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	6p24.3	6	10175803	Intergenic	OFCC1			266553			rs12210761-A	rs12210761	0	12210761	intron	0	0.0676606	6E-6	5.221848749616356	(partial response - SSRI treated - 2 weeks)	   2.45	[2.06-2.83] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23377640	GENDEP Investigators	02/01/2013	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23377640 	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NR	7p12.3	7	45942861	IGFBP1,IGFBP3	IGFBP3 - FTLP15	3486	442304		       21.59	       54.52	rs2462686-C	rs2462686	0	2462686	Intergenic	1	0.3509068	9E-6	5.045757490560675	(partial response - SSRI treated - 2 weeks)	   1.49	[1.31-1.66] 	Illumina & Affymetrix [1.2 million] (Imputed)	N
05/09/2013	23378610	Xie W	02/01/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23378610 	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	1p12	1	119712503	PHGDH	PHGDH			26227			rs478093-G	rs478093	0	478093	intron	0	0.71	2E-14	13.69897000433602	(serine)	NR	NR	Affymetrix [909,508] (imputed)	N
05/09/2013	23378610	Xie W	02/01/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23378610 	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	2q34	2	210678331	CPS1	CPS1			1373			rs715-T	rs715	0	715	UTR-3	0	0.68	3E-50	49.52287874528033	(glycine)	    .61	[0.53-0.69] unit decrease	Affymetrix [909,508] (imputed)	N
05/09/2013	23378610	Xie W	02/01/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23378610 	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	3q21.3	3	126185322	ALDH1L1, KLF15	ALDH1L1-AS2			100862662			rs1107366-G	rs1107366	0	1107366	intron	0	0.51	2E-6	5.698970004336018	(glycine/serine)	    .02	[0.011-0.027] unit increase	Affymetrix [909,508] (imputed)	N
05/09/2013	23378610	Xie W	02/01/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23378610 	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	5q14.1	5	79045474	BHMT, BHMT2	DMGDH			29958			rs17823642-C	rs17823642	0	17823642	intron	0	0.89	2E-9	8.698970004336019	(betaine)	    .38	[0.26-0.51] unit increase	Affymetrix [909,508] (imputed)	N
05/09/2013	23378610	Xie W	02/01/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23378610 	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	12p13.33	12	211754	SLC6A12, SLC6A13	SLC6A12			6539			rs499368-A	rs499368	0	499368	intron	0	0.51	2E-10	9.698970004336017	(betaine)	    .36	[0.25-0.46] unit decrease	Affymetrix [909,508] (imputed)	N
05/09/2013	23378610	Xie W	02/01/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23378610 	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	11q12.2	11	61798436	FADS1, FADS2, FADS3, FEN1	FEN1 - FADS1	2237	3992		        1.19	        1.19	rs174541-T	rs174541	0	174541	Intergenic	1	0.65	3E-9	8.522878745280337	(adrenate)	    .28	[0.19-0.37] unit increase	Affymetrix [909,508] (imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	2	233763993	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs6742078-?	rs6742078	0	6742078	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.12	1E-89	88.99999999999999	(Total bilirubin)	    .15	[0.14-0.17] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	2	233763993	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs6742078-?	rs6742078	0	6742078	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.12	6E-40	39.22184874961636	(Direct bilirubin)	    .13	[0.11-0.15] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	2	233763993	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs6742078-?	rs6742078	0	6742078	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.12	2E-78	77.698970004336	(Indirect bilirubin)	    .17	[0.15-0.18] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	12p12.2	12	20864941	SLCO1B3	SLCO1B3			28234			rs2417940-?	rs2417940	0	2417940	intron	0	0.16	7E-19	18.15490195998574	(Total bilirubin)	    .06	[0.045-0.073] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	12p12.2	12	20864941	SLCO1B3	SLCO1B3			28234			rs2417940-?	rs2417940	0	2417940	intron	0	0.16	2E-16	15.69897000433602	(Direct bilirubin)	    .07	[0.056-0.092] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	12p12.2	12	20864941	SLCO1B3	SLCO1B3			28234			rs2417940-?	rs2417940	0	2417940	intron	0	0.16	5E-13	12.30102999566398	(Indirect bilirubin)	    .06	[0.04-0.072] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	2	233760498	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs4148323-?	rs4148323	0	4148323	intron;intron;intron;intron;intron;intron;intron;missense;intron	0	0.20	5E-69	68.30102999566398	(Total bilirubin)	    .11	[0.097-0.121] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	2	233760498	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs4148323-?	rs4148323	0	4148323	intron;intron;intron;intron;intron;intron;intron;missense;intron	0	0.20	7E-30	29.15490195998574	(Direct bilirubin)	    .09	[0.074-0.106] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	2	233760498	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs4148323-?	rs4148323	0	4148323	intron;intron;intron;intron;intron;intron;intron;missense;intron	0	0.20	2E-62	61.69897000433601	(Indirect bilirubin)	    .12	[0.11-0.13] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23371916	Dai X	01/31/2013	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/23371916 	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	2	233730664	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54659			rs11891311-?	rs11891311	0	11891311	intron;intron;intron;intron;intron;intron;intron;intron	0	0.12	1E-41	41	(Direct bilirubin)	    .14	[0.12-0.16] unit increase	Affymetrix [658,288] (Imputed)	N
05/09/2013	23376709	Kerns SL	01/31/2013	J Urol	http://www.ncbi.nlm.nih.gov/pubmed/23376709 	A 2-stage genome-wide association study to identify single nucleotide polymorphisms associated with development of urinary symptoms after radiotherapy for prostate cancer.	Urinary symptoms in response to radiotherapy in prostate cancer	346 European, African, Hispanic and Asian ancestry individuals	377 European, African, Hispanic and Asian ancestry individuals	9p21.2	9	27488094	IFNK, MOB3B	MOB3B			79817			rs17779457-?	rs17779457	0	17779457	intron	0	0.25	7E-7	6.154901959985743	(at 2-3 yrs)	   2.40	[1.1-3.6] unit increase	Affymetrix [613,496]	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.6936	8E-7	6.096910013008056	(IgG1G2)	    .04	[0.027-0.061] unit decrease	Illumina [~ 2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals		9p21.1	9	33124874	B4GALT1	B4GALT1			2683			rs12342831-T	rs12342831	0	12342831	intron	0	0.73755	5E-8	7.30102999566398	(IgG1G2)	    .05	[0.032-0.068] unit increase	Illumina [~ 2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals		22q13.1	22	39463164	SYNGR1, TAB1, MGAT3, CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.29096	3E-8	7.522878745280337	(IgG1G0N)	    .08	[0.054-0.112] unit increase	Illumina [~ 2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals		22q11.23	22	23828809	SMARCB1, DERL3	SMARCB1			6598			rs2186369-T	rs2186369	0	2186369	intron	0	0.81823	2E-7	6.698970004336019	(IgG1G1N)	    .07	[0.042-0.092] unit increase	Illumina [~ 2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals		22q13.1	22	39463164	SYNGR1, TAB1, MGAT3, CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.29096	2E-10	9.698970004336017	(IgG1G1N)	    .07	[0.050-0.094] unit increase	Illumina [~ 2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals		22q13.1	22	39463164	SYNGR1, TAB1, MGAT3, CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.29096	9E-6	5.045757490560675	(IgG1G2N)	    .07	[0.036-0.094] unit increase	Illumina [~ 2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q12.1	2	102772135	NR	TMEM182			130827			rs12465996-C	rs12465996	0	12465996	intron	0	0.864479920980926	5E-6	5.301029995663981	(IGP1)	    .24	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17p11.2	17	17239582	NR	FLCN - POTENP	201163	441783		        2.39	        2.43	rs12600635-G	rs12600635	0	12600635	Intergenic	1	0.145264718437784	2E-7	6.698970004336019	(IGP1)	    .23	[0.14-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12p13.31	12	7182621	PEX5	CLSTN3 - PEX5	9746	5830		       23.68	        6.54	rs12828421-C	rs12828421	0	12828421	Intergenic	1	0.513425077202543	9E-7	6.045757490560675	(IGP1)	    .16	[0.096-0.223] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32706960	NR	TRNAI25			100189401			rs1794265-C	rs1794265	0	1794265		0	0.945894807901907	8E-6	5.096910013008055	(IGP1)	    .30	[0.17-0.43] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		21q22.3	21	41421864	NR	MX1			4599			rs459482-C	rs459482	0	459482	UTR-5	0	0.594937723887375	2E-6	5.698970004336018	(IGP1)	    .15	[0.089-0.213] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31834688	NR	SNORD48;C6orf48			26801;50854			rs4711279-C	rs4711279	0	4711279	nearGene-5;nearGene-5	0	0.824401248864668	4E-6	5.397940008672037	(IGP1)	    .18	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q13.2	11	68164294	SUV420H1	SUV420H1			51111			rs4930561-G	rs4930561	0	4930561	intron	0	0.510670339237057	1E-8	8	(IGP1)	    .17	[0.11-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17p11.2	17	17057664	NR	MPRIP			23164			rs6502557-G	rs6502557	0	6502557	intron	0	0.861939099364214	6E-6	5.221848749616356	(IGP1)	    .22	[0.12-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q22.3	18	75185206	NR	ZNF407 - ZADH2	55628	284273		      119.53	       12.12	rs9948784-G	rs9948784	0	9948784	Intergenic	1	0.9873089	1E-6	5.999999999999999	(IGP1)	   1.81	[1.08-2.54] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q41	1	215883006	NR	USH2A			7399			rs17025548-G	rs17025548	0	17025548	intron	0	0.165189309375	8E-6	5.096910013008055	(IGP10)	    .20	[0.11-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q31.2	1	191970658	NR	HNRNPA1P46 - RGS18	100421399	64407		      823.64	      187.80	rs17403780-T	rs17403780	0	17403780	Intergenic	1	0.910622742901786	1E-6	5.999999999999999	(IGP10)	    .34	[0.2-0.47] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17844499	NR	BANF2 - SNX5	140836	27131		      108.63	       97.10	rs2077147-C	rs2077147	0	2077147	Intergenic	1	0.336549315178571	3E-6	5.522878745280337	(IGP10)	    .16	[0.091-0.223] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189377544642857	9E-10	9.045757490560675	(IGP10)	    .26	[0.17-0.34] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q21.2	9	77705449	NR	GNA14 - GNAQ	9630	2776		       57.13	       10.83	rs4745661-G	rs4745661	0	4745661	Intergenic	1	0.684846625	3E-6	5.522878745280337	(IGP10)	    .16	[0.094-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p11.22	10	33116159	NR	LOC101929447			101929447			rs7902627-C	rs7902627	0	7902627	intron	0	0.135378764285714	8E-6	5.096910013008055	(IGP10)	    .20	[0.11-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q23.3	12	105058664	NR	ALDH1L2			160428			rs10861337-G	rs10861337	0	10861337	intron	0	0.900366844872369	2E-7	6.698970004336019	(IGP11)	    .27	[0.16-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q21.32	17	47757912	NR	TBX21 - OSBPL7	30009	114881		       11.79	       49.46	rs11651000-G	rs11651000	0	11651000	Intergenic	1	0.840287136139722	8E-6	5.096910013008055	(IGP11)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.391757509628303	7E-14	13.15490195998574	(IGP11)	    .24	[0.18-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q42.12	1	225402973	NR	LBR			3930			rs16844841-C	rs16844841	0	16844841	UTR-3	0	0.0583146565158979	4E-6	5.397940008672037	(IGP11)	    .32	[0.18-0.45] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q21.11	7	86719683	NR	GRM3			2913			rs2189812-C	rs2189812	0	2189812	intron	0	0.258550537841469	6E-6	5.221848749616356	(IGP11)	    .16	[0.092-0.233] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p24.1	2	23369274	NR	RNA5SP87 - KLHL29	100873320	114818		     1030.27	       16.15	rs2577704-G	rs2577704	0	2577704	Intergenic	1	0.900847768293775	3E-6	5.522878745280337	(IGP11)	    .24	[0.14-0.34] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q15	12	70895776	NR	PTPRR			5801			rs4760854-G	rs4760854	0	4760854	intron	0	0.270106625167935	9E-6	5.045757490560675	(IGP11)	    .16	[0.088-0.227] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p23.2	8	2962287	NR	CSMD1			64478			rs4875857-C	rs4875857	0	4875857	intron	0	0.177865535602329	5E-6	5.301029995663981	(IGP11)	    .18	[0.11-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	113009359	NR	C7orf60 - GPR85	154743	54329		       69.48	       71.05	rs6969802-G	rs6969802	0	6969802	Intergenic	1	0.0792205338110166	5E-6	5.301029995663981	(IGP11)	    .26	[0.15-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q21.31	13	62356167	NR	RPL32P28 - LINC00395	100133193	100874157		       27.77	     1311.52	rs9563960-G	rs9563960	0	9563960	Intergenic	1	0.296353501567398	7E-6	5.154901959985742	(IGP11)	    .15	[0.087-0.222] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q24.1	10	95541247	NR	SORBS1			10580			rs11188352-G	rs11188352	0	11188352	intron	0	0.042712513900135	6E-6	5.221848749616356	(IGP12)	    .42	[0.24-0.6] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.699626190283401	5E-6	5.301029995663981	(IGP12)	    .16	[0.09-0.227] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187014891	NR	ST6GAL1			6480			rs17776120-C	rs17776120	0	17776120	intron	0	0.637453049482681	2E-6	5.698970004336018	(IGP12)	    .16	[0.097-0.233] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q25.1	15	79721080	NR	KIAA1024 - TRNAC12	23251	100189155		      248.78	       23.58	rs2692194-G	rs2692194	0	2692194	Intergenic	1	0.626112833558255	9E-6	5.045757490560675	(IGP12)	    .15	[0.084-0.217] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p21.3	7	11251773	NR	RPL23AP52 - NPM1P11	100271465	10836		      244.92	        5.60	rs4720952-G	rs4720952	0	4720952	Intergenic	1	0.419193108861898	3E-7	6.522878745280337	(IGP12)	    .16	[0.098-0.219] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p13	20	4406487	NR	ADRA1D - RPL7AP12	146	128668		      157.48	      184.45	rs586446-C	rs586446	0	586446	Intergenic	1	0.118161679262258	2E-6	5.698970004336018	(IGP12)	    .23	[0.13-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q24.3	6	147438398	NR	YAP1P1 - SAMD5	442266	389432		       30.12	       70.29	rs9403856-C	rs9403856	0	9403856	Intergenic	1	0.86167473954116	4E-7	6.397940008672037	(IGP12)	    .35	[0.21-0.48] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q31.1	13	78807966	NR	LINC00331			100874126			rs9574309-C	rs9574309	0	9574309		0	0.432876341880342	2E-6	5.698970004336018	(IGP12)	    .16	[0.093-0.226] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33153529	NR	B4GALT1			2683			rs10813957-G	rs10813957	0	10813957	intron	0	0.738414638629283	5E-8	7.30102999566398	(IGP13)	    .20	[0.13-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836731980863373	1E-10	10	(IGP13)	    .29	[0.2-0.38] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p22.3	1	86585518	NR	CDCA4P2 - CLCA3P	100129348	9629		       31.96	       48.76	rs1953652-C	rs1953652	0	1953652	Intergenic	1	0.653295152202937	5E-6	5.301029995663981	(IGP13)	    .15	[0.084-0.21] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187014937	NR	ST6GAL1			6480			rs3821819-G	rs3821819	0	3821819	intron	0	0.632029343569203	3E-6	5.522878745280337	(IGP13)	    .16	[0.095-0.231] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p13.3	9	36099402	RECK	RECK			8434			rs4878639-C	rs4878639	0	4878639	intron	0	0.263725273253227	6E-6	5.221848749616356	(IGP13)	    .16	[0.092-0.231] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q23.3	12	108483764	NR	CMKLR1 - FICD	1240	11153		      144.45	       31.51	rs918304-C	rs918304	0	918304	Intergenic	1	0.00963820126262628	9E-6	5.045757490560675	(IGP13)	   1.58	[0.88-2.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q13.1	8	65711997	NR	MTFR1 - PDE7A	9650	5150		        1.43	        2.34	rs10504390-G	rs10504390	0	10504390	Intergenic	1	0.0804795064530485	1E-7	7	(IGP14)	    .30	[0.19-0.4] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698919993324432	9E-7	6.045757490560675	(IGP14)	    .17	[0.1-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q14.3	2	124499159	NR	CNTNAP5			129684			rs11899928-C	rs11899928	0	11899928	intron	0	0.0215231680017802	9E-6	5.045757490560675	(IGP14)	    .69	[0.38-0.99] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q12.1	8	58596021	NR	NSMAF			8439			rs11994937-C	rs11994937	0	11994937	intron	0	0.978061912475822	5E-6	5.301029995663981	(IGP14)	    .50	[0.29-0.72] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q22.3	5	115803051	NR	TMED7 - CDO1	51014	1036		      176.87	        1.68	rs13174348-G	rs13174348	0	13174348	Intergenic	1	0.784686077436582	3E-6	5.522878745280337	(IGP14)	    .18	[0.11-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	3E-8	7.522878745280337	(IGP14)	    .23	[0.15-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q22.1	8	93210716	NR	C8orf87 - LINC00535	389676	642924		       43.87	      135.75	rs278541-C	rs278541	0	278541	Intergenic	1	0.97906300623053	4E-8	7.397940008672037	(IGP14)	    .80	[0.52-1.09] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		21q22.11	21	32890379	NR	C21orf62 - OLIG2	56245	10215		       76.64	      135.53	rs2833991-C	rs2833991	0	2833991	Intergenic	1	0.0446738709390298	5E-6	5.301029995663981	(IGP14)	    .35	[0.2-0.5] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q11.2	15	23572574	NR	MKRN3 - MAGEL2	7681	54551		        4.55	       70.98	rs2900-G	rs2900	0	2900	Intergenic	1	0.860145730752114	4E-6	5.397940008672037	(IGP14)	    .20	[0.12-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p36.12	1	22247449	NR	WNT4 - MIR4418	54361	100616433		      104.42	       18.79	rs909814-C	rs909814	0	909814	Intergenic	1	0.57460965776591	7E-6	5.154901959985742	(IGP14)	    .14	[0.08-0.204] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q21.32	13	65637888	NR	STARP1 - HNRNPA3P5	6771	387933		      326.73	      149.66	rs11619878-G	rs11619878	0	11619878	Intergenic	1	0.510985562333036	1E-7	7	(IGP15)	    .16	[0.1-0.22] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.699014551202137	2E-45	44.69897000433601	(IGP15)	    .50	[0.43-0.57] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	80086944	NR	CCDC40			55036			rs1467979-C	rs1467979	0	1467979	intron	0	0.82313228539626	2E-6	5.698970004336018	(IGP15)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q23	15	68426648	NR	ITGA11			22801			rs16952065-C	rs16952065	0	16952065	intron	0	0.93746857524488	6E-6	5.221848749616356	(IGP15)	    .41	[0.23-0.59] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q11.2	2	99259781	NR	LYG2 - LYG1	254773	129530		        4.67	       24.46	rs2200578-C	rs2200578	0	2200578	Intergenic	1	0.788386317008014	4E-7	6.397940008672037	(IGP15)	    .19	[0.12-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q23.2	6	131034724	NR	EPB41L2			2037			rs6908917-C	rs6908917	0	6908917	intron	0	0.751956642030276	2E-6	5.698970004336018	(IGP15)	    .17	[0.098-0.236] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q13.12	20	45145096	NR	WFDC12 - PI3	128488	5266		       20.63	       29.80	rs7361168-C	rs7361168	0	7361168	Intergenic	1	0.758153525448028	3E-6	5.522878745280337	(IGP15)	    .36	[0.21-0.51] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176763000890472	5E-19	18.30102999566398	(IGP15)	    .39	[0.31-0.48] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q21.23	4	85208463	NR	ARHGAP24			83478			rs7691216-G	rs7691216	0	7691216	intron	0	0.155663414959929	7E-6	5.154901959985742	(IGP15)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q24.31	12	123832329	NR	DNAH10			196385			rs7978454-G	rs7978454	0	7978454	intron	0	0.409630410507569	7E-6	5.154901959985742	(IGP15)	    .15	[0.083-0.212] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	95965759	NR	CTD-2337A12.1			101929710			rs918629-G	rs918629	0	918629	intron	0	0.745524385574354	1E-6	5.999999999999999	(IGP15)	    .17	[0.1-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	32870070	NR	TMEM215 - ASS1P12	401498	392302		       80.87	       75.82	rs10971170-G	rs10971170	0	10971170	Intergenic	1	0.969529949122017	9E-6	5.045757490560675	(IGP16)	    .41	[0.23-0.6] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q43	1	242368352	NR	PLD5			200150			rs1439523-C	rs1439523	0	1439523	intron	0	0.983777045475011	4E-6	5.397940008672037	(IGP16)	    .61	[0.35-0.87] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p26.2	3	3190154	NR	CRBN - SUMF1	51185	285362		       10.44	      592.35	rs1672743-T	rs1672743	0	1672743	Intergenic	1	0.053157	6E-6	5.221848749616356	(IGP16)	   1.17	[0.66-1.67] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32985503	NR	TRNAI25			100189401			rs3097645-C	rs3097645	0	3097645		0	0.873857556055831	6E-6	5.221848749616356	(IGP16)	    .21	[0.12-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p22.3	3	32223499	NR	RPSAP11 - CMTM8	645326	152189		       31.80	       15.18	rs4376071-C	rs4376071	0	4376071	Intergenic	1	0.313983692931112	8E-6	5.096910013008055	(IGP16)	    .16	[0.09-0.231] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	96151236	NR	CTD-2337A12.1			101929710			rs4869266-G	rs4869266	0	4869266	intron	0	0.664911823953174	3E-6	5.522878745280337	(IGP16)	    .15	[0.088-0.216] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q43	1	237435116	NR	RYR2			6262			rs7529251-C	rs7529251	0	7529251	intron	0	0.907539242683476	3E-7	6.522878745280337	(IGP16)	    .28	[0.17-0.38] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q22.3	11	107476551	NR	SMARCE1P1 - ALKBH8	100271884	91801		       71.91	       26.18	rs11212260-C	rs11212260	0	11212260	Intergenic	1	0.0281428517133956	5E-6	5.301029995663981	(IGP17)	    .46	[0.26-0.65] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698919993324432	1E-8	8	(IGP17)	    .20	[0.13-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33124874	B4GALT1	B4GALT1			2683			rs12342831-C	rs12342831	0	12342831	intron	0	0.262623398308856	3E-11	10.52287874528034	(IGP17)	    .24	[0.17-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q12	14	29618932	NR	PRKD1			5587			rs12431702-C	rs12431702	0	12431702	intron	0	0.380447777481086	8E-6	5.096910013008055	(IGP17)	    .15	[0.082-0.21] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q32.1	2	185319303	NR	RPL23AP33 - ELF2P4	100271293	644935		      416.74	      226.42	rs1364477-G	rs1364477	0	1364477	Intergenic	1	0.178595763239875	6E-6	5.221848749616356	(IGP17)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q21.1	5	100966102	NR	MIR548P - GTF3AP4	100302288	100420593		      149.54	      305.64	rs17161553-C	rs17161553	0	17161553	Intergenic	1	0.00759162019720625	6E-6	5.221848749616356	(IGP17)	   1.60	[0.9-2.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836731980863373	2E-7	6.698970004336019	(IGP17)	    .23	[0.14-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q24.21	12	115774058	NR	UBA52P7 - MED13L	100128617	23389		      181.08	      184.52	rs17719439-G	rs17719439	0	17719439	Intergenic	1	0.96234668518024	1E-6	5.999999999999999	(IGP17)	    .40	[0.24-0.57] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p24.1	9	7518656	NR	PPIAP33			392285			rs2381628-C	rs2381628	0	2381628		0	0.816537394303516	6E-6	5.221848749616356	(IGP17)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p14.3	7	34657448	NR	NPSR1;NPSR1-AS1			387129;404744			rs2530544-G	rs2530544	0	2530544	nearGene-5;intron	0	0.768357767245216	8E-7	6.096910013008056	(IGP17)	    .20	[0.12-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	81244914	NR	SLC38A10			124565			rs2659005-C	rs2659005	0	2659005	UTR-3	0	0.517316186025812	2E-6	5.698970004336018	(IGP17)	    .15	[0.09-0.217] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5p14.3	5	18483542	NR	RPL36AP21 - RPL32P14	100271332	100270994		      433.63	      557.49	rs4866334-C	rs4866334	0	4866334	Intergenic	1	0.0883955067200712	4E-6	5.397940008672037	(IGP17)	    .25	[0.15-0.36] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p13.3	9	36099402	RECK	RECK			8434			rs4878639-C	rs4878639	0	4878639	intron	0	0.263725273253227	4E-8	7.397940008672037	(IGP17)	    .20	[0.13-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	114101050	NR	FOXP2			93986			rs6466479-G	rs6466479	0	6466479	intron	0	0.122643248331108	5E-7	6.30102999566398	(IGP17)	    .24	[0.15-0.34] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39352849	NR	SYNGR1			9145			rs137699-G	rs137699	0	137699	intron	0	0.690710359535507	8E-6	5.096910013008055	(IGP18)	    .16	[0.088-0.225] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q31.3	14	85216709	NR	RNU7-51P - RNU3P3	100151647	26843		     2168.07	       55.20	rs1550584-C	rs1550584	0	1550584	Intergenic	1	0.469772138901295	7E-6	5.154901959985742	(IGP18)	    .14	[0.078-0.198] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p12	11	41203883	NR	LRRC4C			57689			rs2862035-C	rs2862035	0	2862035	intron	0	0.0246322445734703	8E-6	5.096910013008055	(IGP18)	    .44	[0.25-0.63] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q23.3	16	83737891	NR	CDH13			1012			rs444881-C	rs444881	0	444881	intron	0	0.585534589548906	4E-6	5.397940008672037	(IGP18)	    .14	[0.083-0.206] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q13.12	20	46292992	NR	CDH22			64405			rs6065945-C	rs6065945	0	6065945	intron	0	0.470163670388566	5E-6	5.301029995663981	(IGP18)	    .14	[0.081-0.201] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q24.1	10	96672946	NR	PIK3AP1			118788			rs7895244-T	rs7895244	0	7895244	intron	0	0.929057661098705	5E-6	5.301029995663981	(IGP18)	    .28	[0.16-0.41] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32146738	PRRT1	TRNAI25			100189401			rs9296009-T	rs9296009	0	9296009		0	0.196796488164359	4E-6	5.397940008672037	(IGP18)	    .18	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32706960	NR	TRNAI25			100189401			rs1794265-C	rs1794265	0	1794265		0	0.945736455079007	1E-6	5.999999999999999	(IGP19)	    .33	[0.2-0.46] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p24.2	3	25302124	NR	RARB			5915			rs322668-G	rs322668	0	322668	intron	0	0.285734488487585	4E-6	5.397940008672037	(IGP19)	    .16	[0.092-0.226] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q35.1	5	170034543	NR	DOCK2			1794			rs3763048-C	rs3763048	0	3763048	cds-synon	0	0.672342024379233	9E-6	5.045757490560675	(IGP19)	    .14	[0.08-0.205] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31834688	NR	SNORD48;C6orf48			26801;50854			rs4711279-C	rs4711279	0	4711279	nearGene-5;nearGene-5	0	0.823257144469526	3E-7	6.522878745280337	(IGP19)	    .20	[0.12-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p13.3	2	70836812	NR	CD207			50489			rs4852708-C	rs4852708	0	4852708	nearGene-5	0	0.875251656884876	9E-6	5.045757490560675	(IGP19)	    .21	[0.11-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	96092980	NR	CTD-2337A12.1			101929710			rs7734985-G	rs7734985	0	7734985	intron	0	0.336041271783296	2E-6	5.698970004336018	(IGP19)	    .16	[0.093-0.221] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30698892	NR	TRNAI25			100189401			rs9468811-C	rs9468811	0	9468811		0	0.937946818961625	6E-7	6.221848749616355	(IGP19)	    .35	[0.21-0.48] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32759026	HLA-DQA2, HLA-DQB2	HLA-DQB2			3120			rs1049110-C	rs1049110	0	1049110	missense	0	0.34601888034188	4E-8	7.397940008672037	(IGP2)	    .19	[0.12-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q32.3	1	214283666	NR	SMYD2			56950			rs9308433-C	rs9308433	0	9308433	intron	0	0.408224476833108	4E-6	5.397940008672037	(IGP2)	    .15	[0.084-0.207] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q23.2	5	127386161	NR	MEGF10			84466			rs10519937-C	rs10519937	0	10519937	intron	0	0.831854334233018	9E-6	5.045757490560675	(IGP2)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q36.1	7	151217985	ABCF2,SMARCD3	ABCF2			10061			rs1122979-G	rs1122979	0	1122979	intron	0	0.875182808816914	2E-10	9.698970004336017	(IGP2)	    .31	[0.22-0.41] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p14	10	7845658	NR	TAF3			83860			rs11255400-G	rs11255400	0	11255400	intron	0	0.931314253351327	7E-6	5.154901959985742	(IGP2)	    .29	[0.16-0.41] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p12	8	31176759	NR	WRN - KCTD9P6	7486	642513		        3.00	       43.26	rs11774682-C	rs11774682	0	11774682	Intergenic	1	0.96615368329177	1E-6	5.999999999999999	(IGP2)	    .83	[0.49-1.16] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.390847885290148	8E-20	19.09691001300806	(IGP2)	    .29	[0.23-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.2	9	27126417	NR	TEK			7010			rs1334809-G	rs1334809	0	1334809	intron	0	0.884652631578947	8E-6	5.096910013008055	(IGP2)	    .22	[0.12-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q22.2	15	62046598	NR	VPS13C			54832			rs1436958-G	rs1436958	0	1436958	intron	0	0.57353197705803	9E-6	5.045757490560675	(IGP2)	    .14	[0.078-0.2] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30711851	NR	MDC1			9656			rs3094093-T	rs3094093	0	3094093	intron	0	0.107418420152946	8E-6	5.096910013008055	(IGP2)	    .22	[0.13-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32985503	NR	TRNAI25			100189401			rs3097645-C	rs3097645	0	3097645		0	0.874157767431399	5E-6	5.301029995663981	(IGP2)	    .21	[0.12-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31962664	NR	SKIV2L			6499			rs592229-G	rs592229	0	592229	intron	0	0.370283129554656	9E-6	5.045757490560675	(IGP2)	    .15	[0.083-0.213] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q13.3	15	33201020	NR	HNRNPA1P71 - TMCO5B	100421433	100652857		      187.96	       35.46	rs6494964-G	rs6494964	0	6494964	Intergenic	1	0.686050906432748	6E-6	5.221848749616356	(IGP2)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.63670095951417	2E-9	8.698970004336019	(IGP2)	    .19	[0.13-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q31.1	5	132386057	NR	SLC22A5			6584			rs7731390-C	rs7731390	0	7731390	intron	0	0.947724237786775	3E-6	5.522878745280337	(IGP2)	    .38	[0.22-0.53] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q23.1	12	97134362	NR	TRNAQ46P - RMST	100189509	196475		       37.38	      330.66	rs7953959-C	rs7953959	0	7953959	Intergenic	1	0.49043844534413	8E-6	5.096910013008055	(IGP2)	    .14	[0.078-0.2] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q12.2	16	53039876	NR	CASC16 - CHD9	643714	80205		      432.90	       15.12	rs10852453-T	rs10852453	0	10852453	Intergenic	1	0.502934347747748	1E-6	5.999999999999999	(IGP20)	    .15	[0.088-0.205] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p16.1	4	6181457	NR	JAKMIP1			152789			rs10937705-G	rs10937705	0	10937705	intron	0	0.779354751351351	4E-6	5.397940008672037	(IGP20)	    .17	[0.099-0.244] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q13.2	12	55031132	NR	LOC101927484			101927484			rs1386809-C	rs1386809	0	1386809	intron	0	0.284827378378378	7E-6	5.154901959985742	(IGP20)	    .16	[0.089-0.226] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p24.3	2	13889623	NR	NACAP4 - LINC00276	100421926	100499171		      305.33	      339.25	rs1598106-C	rs1598106	0	1598106	Intergenic	1	0.408824843693694	2E-7	6.698970004336019	(IGP20)	    .16	[0.1-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q43	1	242358740	NR	PLD5			200150			rs2919024-G	rs2919024	0	2919024	intron	0	0.012337327027027	7E-6	5.154901959985742	(IGP20)	    .68	[0.38-0.97] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q32.12	14	92757645	NR	LGMN - GOLGA5	5641	9950		        8.94	       36.59	rs7160685-C	rs7160685	0	7160685	Intergenic	1	0.700909354954955	8E-6	5.096910013008055	(IGP20)	    .16	[0.088-0.225] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.393609222420723	2E-6	5.698970004336018	(IGP21)	    .15	[0.089-0.211] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p14	10	9526947	NR	LINC00709 - HSP90AB7P	100507163	644495		      239.89	      194.77	rs17515642-C	rs17515642	0	17515642	Intergenic	1	0.855118419830281	2E-6	5.698970004336018	(IGP21)	    .23	[0.13-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q14.3	6	86897124	NR	NDUFA5P9 - HTR1E	100289579	3354		      682.55	       40.18	rs1853639-G	rs1853639	0	1853639	Intergenic	1	0.359453092898615	8E-6	5.096910013008055	(IGP21)	    .18	[0.099-0.254] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q24.1	11	123002368	NR	BSX - RPL34P23	390259	100271499		       20.70	       33.50	rs2126200-C	rs2126200	0	2126200	Intergenic	1	0.541753456007146	7E-6	5.154901959985742	(IGP21)	    .14	[0.078-0.2] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.1	1	78711183	NR	RPL23P3 - ELTD1	100130630	64123		       44.49	      178.58	rs4650376-C	rs4650376	0	4650376	Intergenic	1	0.126317908441268	2E-6	5.698970004336018	(IGP21)	    .24	[0.14-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q24.22	8	131318469	NR	ADCY8 - EFR3A	114	23167		      277.70	      585.64	rs10108033-C	rs10108033	0	10108033	Intergenic	1	0.990183	3E-6	5.522878745280337	(IGP22)	   2.85	[1.65-4.05] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33125806	NR	B4GALT1			2683			rs10758189-C	rs10758189	0	10758189	intron	0	0.31099528984862	2E-6	5.698970004336018	(IGP22)	    .17	[0.099-0.236] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p14.3	11	25468936	NR	LUZP2 - RPL36AP40	338645	554234		      386.30	      119.43	rs10834691-G	rs10834691	0	10834691	Intergenic	1	0.459134585485307	4E-6	5.397940008672037	(IGP22)	    .15	[0.085-0.211] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698789225734639	9E-7	6.045757490560675	(IGP22)	    .17	[0.1-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q13	6	70031317	NR	COL19A1			1310			rs3793039-G	rs3793039	0	3793039	intron	0	0.25306153873553	2E-6	5.698970004336018	(IGP22)	    .24	[0.14-0.34] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q12	20	40842787	NR	MAFB - RNA5SP484	9935	100873726		      153.55	       11.33	rs6072161-C	rs6072161	0	6072161	Intergenic	1	0.573146759127338	3E-7	6.522878745280337	(IGP22)	    .16	[0.098-0.22] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q24.3	14	74860740	NR	PROX2			283571			rs722599-C	rs722599	0	722599	intron	0	0.4301501460374	8E-6	5.096910013008055	(IGP22)	    .14	[0.078-0.201] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.298923567230632	5E-10	9.301029995663981	(IGP22)	    .21	[0.14-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p15.33	4	12578222	NR	RNA5SP156 - HSP90AB2P	100873422	391634		     1164.06	      758.17	rs10002492-G	rs10002492	0	10002492	Intergenic	1	0.167227182224207	8E-6	5.096910013008055	(IGP23)	    .18	[0.1-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.699064071907101	6E-11	10.22184874961635	(IGP23)	    .23	[0.16-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.1	7	53059866	NR	POM121L12 - HAUS6P1	285877	653175		       22.94	      127.27	rs1174864-G	rs1174864	0	1174864	Intergenic	1	0.49190341581063	5E-6	5.301029995663981	(IGP23)	    .14	[0.081-0.203] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.1	17	73811574	NR	LINC00469			283982			rs12451840-C	rs12451840	0	12451840	intron	0	0.0417941590759076	3E-6	5.522878745280337	(IGP23)	    .73	[0.42-1.04] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p13	3	71364894	NR	FOXP1			27086			rs13072512-G	rs13072512	0	13072512	intron	0	0.576619429209469	6E-6	5.221848749616356	(IGP23)	    .15	[0.084-0.212] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p11.23	20	20653462	NR	RALGAPA2			57186			rs6132333-C	rs6132333	0	6132333	intron	0	0.0251507142920947	1E-6	5.999999999999999	(IGP23)	    .53	[0.31-0.74] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q24.1	10	97148976	NR	SLIT1			6585			rs7072055-C	rs7072055	0	7072055	intron	0	0.831620998660116	2E-6	5.698970004336018	(IGP23)	    .20	[0.12-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p15.1	11	19030325	NR	MRGPRX1 - MRGPRX2	259249	117194		       95.32	       24.13	rs7111562-C	rs7111562	0	7111562	Intergenic	1	0.140150397945511	4E-7	6.397940008672037	(IGP23)	    .24	[0.15-0.34] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31218249	NR	TRNAI25			100189401			rs9263963-T	rs9263963	0	9263963		0	0.113293342563644	1E-6	5.999999999999999	(IGP23)	    .26	[0.15-0.36] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32146738	PRRT1	TRNAI25			100189401			rs9296009-T	rs9296009	0	9296009		0	0.196432337204109	4E-8	7.397940008672037	(IGP23)	    .21	[0.14-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p14.1	7	39081900	NR	POU6F2			11281			rs10464366-T	rs10464366	0	10464366	intron	0	0.23005360311804	3E-6	5.522878745280337	(IGP24)	    .17	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698883767483296	4E-31	30.39794000867203	(IGP24)	    .40	[0.34-0.47] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33124874	B4GALT1	B4GALT1			2683			rs12342831-C	rs12342831	0	12342831	intron	0	0.262634642316258	3E-10	9.522878745280336	(IGP24)	    .22	[0.15-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q23.1	10	82659654	NR	NRG3			10718			rs2219937-G	rs2219937	0	2219937	intron	0	0.984667459331848	4E-6	5.397940008672037	(IGP24)	    .75	[0.43-1.07] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	81244914	NR	SLC38A10			124565			rs2659005-C	rs2659005	0	2659005	UTR-3	0	0.517358149665924	3E-7	6.522878745280337	(IGP24)	    .16	[0.1-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q22.1	4	91996064	NR	TMSB4XP8 - GRID2	7117	2895		     1156.95	      308.24	rs6853847-C	rs6853847	0	6853847	Intergenic	1	0.0304513777282851	2E-6	5.698970004336018	(IGP24)	    .48	[0.28-0.67] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176834709131403	4E-16	15.39794000867204	(IGP24)	    .35	[0.27-0.44] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q21.3	10	63112651	NR	EGR2 - NRBF2	1959	29982		      219.13	       20.60	rs10822136-C	rs10822136	0	10822136	Intergenic	1	0.805465852941177	7E-7	6.154901959985743	(IGP25)	    .21	[0.13-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p15.4	11	5666794	NR	TRIM5			85363			rs11820502-C	rs11820502	0	11820502	intron	0	0.287492850713013	1E-6	5.999999999999999	(IGP25)	    .18	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p15.2	4	21453634	NR	KCNIP4			80333			rs11942476-C	rs11942476	0	11942476	intron	0	0.855854377005348	6E-6	5.221848749616356	(IGP25)	    .21	[0.12-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q24.33	12	129162027	NR	TMEM132D			121256			rs12580240-G	rs12580240	0	12580240	intron	0	0.0139850911701364	2E-6	5.698970004336018	(IGP25)	    .90	[0.53-1.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p12.1	10	25713319	NR	LINC00836			101929052			rs2504183-G	rs2504183	0	2504183	intron	0	0.71933817201426	7E-6	5.154901959985742	(IGP25)	    .19	[0.11-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q21.2	7	91610982	NR	NIPA2P1 - MTERF	100132321	7978		      289.79	      261.73	rs2540552-C	rs2540552	0	2540552	Intergenic	1	0.58104074197861	8E-6	5.096910013008055	(IGP25)	    .14	[0.078-0.199] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q12	20	40849893	NR	MAFB - RNA5SP484	9935	100873726		      160.65	        4.23	rs6102185-G	rs6102185	0	6102185	Intergenic	1	0.422812170677362	2E-6	5.698970004336018	(IGP25)	    .15	[0.088-0.21] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p11.23	20	20653462	NR	RALGAPA2			57186			rs6132333-C	rs6132333	0	6132333	intron	0	0.0250948889928699	1E-6	5.999999999999999	(IGP25)	    .53	[0.31-0.75] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32146738	PRRT1	TRNAI25			100189401			rs9296009-T	rs9296009	0	9296009		0	0.19676420855615	4E-6	5.397940008672037	(IGP25)	    .18	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p12	11	41204404	NR	LRRC4C			57689			rs980952-G	rs980952	0	980952	intron	0	0.975374875668449	5E-6	5.301029995663981	(IGP25)	    .45	[0.26-0.64] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q32.1	2	185160008	NR	RPL23AP33 - ELF2P4	100271293	644935		      257.45	      385.71	rs11678036-C	rs11678036	0	11678036	Intergenic	1	0.390262875779163	6E-6	5.221848749616356	(IGP26)	    .15	[0.082-0.209] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698789225734639	2E-13	12.69897000433602	(IGP26)	    .26	[0.19-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33124874	B4GALT1	B4GALT1			2683			rs12342831-C	rs12342831	0	12342831	intron	0	0.262517754229742	3E-11	10.52287874528034	(IGP26)	    .24	[0.17-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q21.11	8	75124209	NR	CRISPLD1 - CASC9	83690	101805492		       89.65	       98.91	rs1531590-C	rs1531590	0	1531590	Intergenic	1	0.227292733303651	3E-6	5.522878745280337	(IGP26)	    .18	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q21.1	5	100966102	NR	MIR548P - GTF3AP4	100302288	100420593		      149.54	      305.64	rs17161553-C	rs17161553	0	17161553	Intergenic	1	0.00759786255756579	1E-6	5.999999999999999	(IGP26)	   1.69	[1.01-2.38] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	81244914	NR	SLC38A10			124565			rs2659005-C	rs2659005	0	2659005	UTR-3	0	0.517323975066785	4E-7	6.397940008672037	(IGP26)	    .17	[0.1-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	114101050	NR	FOXP2			93986			rs6466479-G	rs6466479	0	6466479	intron	0	0.12247588824577	2E-6	5.698970004336018	(IGP26)	    .23	[0.14-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q22.1	4	91996064	NR	TMSB4XP8 - GRID2	7117	2895		     1156.95	      308.24	rs6853847-C	rs6853847	0	6853847	Intergenic	1	0.0304378588601959	5E-6	5.301029995663981	(IGP26)	    .46	[0.26-0.65] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17p12	17	11346902	NR	SHISA6			388336			rs8076431-C	rs8076431	0	8076431	intron	0	0.851273368210151	2E-6	5.698970004336018	(IGP26)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q33.3	5	157388755	NR	CYFIP2;LOC102724404			26999;102724404			rs871012-C	rs871012	0	871012	intron;intron	0	0.44603092920748	5E-6	5.301029995663981	(IGP26)	    .15	[0.084-0.21] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q24.22	8	131318469	NR	ADCY8 - EFR3A	114	23167		      277.70	      585.64	rs10108033-C	rs10108033	0	10108033	Intergenic	1	0.990183	1E-6	5.999999999999999	(IGP27)	   2.96	[1.76-4.15] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p15.4	11	5666794	NR	TRIM5			85363			rs11820502-C	rs11820502	0	11820502	intron	0	0.287504188780053	3E-6	5.522878745280337	(IGP27)	    .18	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q14.1	12	61155300	NR	SLC16A7 - PGBD3P1	9194	267005		     1365.45	       75.64	rs17124610-C	rs17124610	0	17124610	Intergenic	1	0.983922182991986	8E-6	5.096910013008055	(IGP27)	    .67	[0.38-0.97] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q12	20	40849893	NR	MAFB - RNA5SP484	9935	100873726		      160.65	        4.23	rs6102185-G	rs6102185	0	6102185	Intergenic	1	0.423097751558326	1E-6	5.999999999999999	(IGP27)	    .15	[0.09-0.212] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p11.23	20	20653462	NR	RALGAPA2			57186			rs6132333-C	rs6132333	0	6132333	intron	0	0.0250725390917186	5E-6	5.301029995663981	(IGP27)	    .50	[0.29-0.72] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	32422692	NR	ACO1			48			rs7032871-T	rs7032871	0	7032871	intron	0	0.278857772929653	5E-6	5.301029995663981	(IGP27)	    .16	[0.09-0.226] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q25.2	3	153632327	NR	C3orf79 - RPL21P42	152118	100271162		      129.63	      391.47	rs7623788-G	rs7623788	0	7623788	Intergenic	1	0.134195012466607	5E-6	5.301029995663981	(IGP27)	    .21	[0.12-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.1	1	70977467	NR	PTGER3			5733			rs909848-C	rs909848	0	909848	intron	0	0.60707254318789	7E-6	5.154901959985742	(IGP27)	    .14	[0.081-0.206] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.69898246345811	9E-37	36.04575749056067	(IGP28)	    .44	[0.37-0.51] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p21.31	3	44291832	NR	TOPAZ1			375337			rs13323323-G	rs13323323	0	13323323	intron	0	0.732786566399287	4E-6	5.397940008672037	(IGP28)	    .16	[0.091-0.227] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	80086944	NR	CCDC40			55036			rs1467979-C	rs1467979	0	1467979	intron	0	0.823196467468806	3E-6	5.522878745280337	(IGP28)	    .19	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q24.12	8	121170070	NR	SNTB1 - RPL35AP19	6641	100271322		      357.01	      210.02	rs1604897-C	rs1604897	0	1604897	Intergenic	1	0.836453155525847	8E-6	5.096910013008055	(IGP28)	    .19	[0.1-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	80092818	NR	CCDC40			55036			rs2361701-G	rs2361701	0	2361701	intron	0	0.823049887254902	4E-6	5.397940008672037	(IGP28)	    .19	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q23.1	8	107269199	NR	ANGPT1			284			rs6993449-C	rs6993449	0	6993449	intron	0	0.650415290106952	3E-6	5.522878745280337	(IGP28)	    .15	[0.088-0.217] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176683507130125	2E-20	19.69897000433602	(IGP28)	    .40	[0.32-0.49] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q23	15	68426648	NR	ITGA11			22801			rs16952065-C	rs16952065	0	16952065	intron	0	0.937426751336898	1E-6	5.999999999999999	(IGP28)	    .44	[0.26-0.62] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.699317446770601	6E-75	74.22184874961634	(IGP29)	    .64	[0.57-0.71] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q12	12	40959947	NR	CNTN1			1272			rs13328933-C	rs13328933	0	13328933	intron	0	0.948348054342984	5E-6	5.301029995663981	(IGP29)	    .31	[0.18-0.45] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	81244914	NR	SLC38A10			124565			rs2659005-C	rs2659005	0	2659005	UTR-3	0	0.517261684187082	9E-6	5.045757490560675	(IGP29)	    .14	[0.08-0.208] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q13.2	20	54084754	NR	MIR4756 - CYP24A1	100616225	1591		       16.27	       68.70	rs6064045-C	rs6064045	0	6064045	Intergenic	1	0.521164665033408	7E-6	5.154901959985742	(IGP29)	    .14	[0.077-0.197] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q14.1	5	79647825	NR	PAPD4			167153			rs6859704-C	rs6859704	0	6859704	intron	0	0.0769240376391982	8E-6	5.096910013008055	(IGP29)	    .26	[0.15-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q22.3	11	109022640	NR	CYCSP29 - RNA5SP349	360180	100873611		      199.99	       98.24	rs7101378-G	rs7101378	0	7101378	Intergenic	1	0.531881765256125	7E-6	5.154901959985742	(IGP29)	    .14	[0.079-0.201] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q13.1	13	32136383	NR	FRY			10129			rs7331540-C	rs7331540	0	7331540	intron	0	0.442209461024499	5E-6	5.301029995663981	(IGP29)	    .14	[0.08-0.201] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.17684106013363	3E-40	39.52287874528034	(IGP29)	    .58	[0.49-0.67] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p25.3	2	1554155	NR	TPO - PXDN	7173	7837		       10.48	       77.73	rs10206020-C	rs10206020	0	10206020	Intergenic	1	0.188020994657168	4E-6	5.397940008672037	(IGP3)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33124874	B4GALT1	B4GALT1			2683			rs12342831-C	rs12342831	0	12342831	intron	0	0.262517807212823	5E-7	6.30102999566398	(IGP3)	    .18	[0.11-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q32	5	148223504	NR	HMGN1P16 - SPINK13	100874442	153218		        1.86	       45.36	rs1368304-G	rs1368304	0	1368304	Intergenic	1	0.915930538379341	9E-6	5.045757490560675	(IGP3)	    .24	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836659126892253	2E-9	8.698970004336019	(IGP3)	    .27	[0.18-0.35] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	114101050	NR	FOXP2			93986			rs6466479-G	rs6466479	0	6466479	intron	0	0.122476576224399	3E-6	5.522878745280337	(IGP3)	    .22	[0.13-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p22	8	14256307	NR	SGCZ			137868			rs9886428-G	rs9886428	0	9886428	intron	0	0.455031556990205	3E-6	5.522878745280337	(IGP3)	    .14	[0.083-0.203] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q21.3	10	63112651	NR	EGR2 - NRBF2	1959	29982		      219.13	       20.60	rs10822136-C	rs10822136	0	10822136	Intergenic	1	0.805344702630406	5E-7	6.30102999566398	(IGP30)	    .21	[0.13-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698844000445832	3E-6	5.522878745280337	(IGP30)	    .16	[0.095-0.233] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p15.4	11	5666794	NR	TRIM5			85363			rs11820502-C	rs11820502	0	11820502	intron	0	0.287788676326349	2E-6	5.698970004336018	(IGP30)	    .18	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	28181087	NR	LINGO2			158038			rs1319535-C	rs1319535	0	1319535	intron	0	0.34574886090058	4E-6	5.397940008672037	(IGP30)	    .15	[0.087-0.215] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p22.1	3	39433851	NR	SNORA62 - MOBP	6044	4336		       22.64	       33.72	rs17038828-C	rs17038828	0	17038828	Intergenic	1	0.979741981275078	8E-6	5.096910013008055	(IGP30)	    .56	[0.31-0.81] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	51877490	NR	HMGB1P47 - KATNBL1P4	100873897	100128982		      467.29	       53.32	rs17835853-G	rs17835853	0	17835853	Intergenic	1	0.956794057690593	4E-6	5.397940008672037	(IGP30)	    .48	[0.27-0.68] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q32.33	14	104880570	NR	CEP170B			283638			rs2841233-C	rs2841233	0	2841233	intron	0	0.642908958091841	7E-6	5.154901959985742	(IGP30)	    .15	[0.083-0.212] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		19p13.11	19	19165550	NR	MEF2BNB-MEF2B;MEF2B			4207;100271849			rs7249142-G	rs7249142	0	7249142	intron;intron	0	0.619273395452519	9E-6	5.045757490560675	(IGP30)	    .15	[0.085-0.219] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q23.1	5	116398108	NR	LOC101927212			101927212			rs7734156-C	rs7734156	0	7734156	intron	0	0.0499571860008917	7E-6	5.154901959985742	(IGP30)	    .34	[0.19-0.49] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p14.1	7	41997238	NR	GLI3			2737			rs846271-C	rs846271	0	846271	intron	0	0.628956223807401	2E-6	5.698970004336018	(IGP30)	    .15	[0.09-0.218] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299100489968792	2E-6	5.698970004336018	(IGP30)	    .16	[0.095-0.227] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.2	6	37564327	NR	TRNAI25			100189401			rs9394438-G	rs9394438	0	9394438		0	0.713317013374944	7E-6	5.154901959985742	(IGP30)	    .17	[0.094-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q31.1	14	81168979	NR	NMNAT1P1 - GTF2A1	326607	2957		      135.44	        6.47	rs10131728-C	rs10131728	0	10131728	Intergenic	1	0.872444873552983	2E-7	6.698970004336019	(IGP31)	    .24	[0.15-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q26.2	10	128435544	NR	LINC01163 - MGMT	101927381	4255		      117.82	     1031.65	rs10764775-C	rs10764775	0	10764775	Intergenic	1	0.340436585930543	6E-6	5.221848749616356	(IGP31)	    .14	[0.081-0.206] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q14.1	12	62424701	NR	MIR6125 - MON2	102465133	23041		      164.25	       42.12	rs10877839-C	rs10877839	0	10877839	Intergenic	1	0.32479838824577	9E-6	5.045757490560675	(IGP31)	    .15	[0.082-0.21] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q12	12	38859306	NR	CPNE8			144402			rs11169838-C	rs11169838	0	11169838	intron	0	0.680521641139804	2E-6	5.698970004336018	(IGP31)	    .18	[0.1-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.699014551202137	6E-17	16.22184874961636	(IGP31)	    .29	[0.22-0.36] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q26.12	10	120062026	NR	NACAP2 - RPL21P16	651144	729402		       64.28	      292.62	rs17621444-C	rs17621444	0	17621444	Intergenic	1	0.722329589937667	3E-6	5.522878745280337	(IGP31)	    .16	[0.095-0.233] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p23.3	8	616207	NR	TDRP - ERICH1	157695	157697		       70.43	       21.32	rs17666538-C	rs17666538	0	17666538	Intergenic	1	0.073151367141585	7E-6	5.154901959985742	(IGP31)	    .28	[0.16-0.41] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q21	6	107339442	NR	PDSS2			57107			rs2430457-G	rs2430457	0	2430457	intron	0	0.00697800000000004	5E-6	5.301029995663981	(IGP31)	   2.60	[1.48-3.73] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	95318169	NR	RPL7P18 - FAM81B	100270852	153643		      491.45	       73.18	rs255982-G	rs255982	0	255982	Intergenic	1	0.848905209260908	8E-6	5.096910013008055	(IGP31)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33139455	NR	B4GALT1			2683			rs3780486-C	rs3780486	0	3780486	intron	0	0.737357337934105	1E-6	5.999999999999999	(IGP31)	    .17	[0.1-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q25.3	1	181686616	NR	CACNA1E			777			rs3845441-C	rs3845441	0	3845441	intron	0	0.127711492920748	7E-6	5.154901959985742	(IGP31)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q25.31	3	155549651	NR	PLCH1			23007			rs3851357-G	rs3851357	0	3851357	intron	0	0.805635591718611	9E-6	5.045757490560675	(IGP31)	    .18	[0.1-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.1	1	79043424	NR	ELTD1 - PSAT1P3	64123	729779		       36.61	       11.52	rs6687262-C	rs6687262	0	6687262	Intergenic	1	0.552969396260018	2E-6	5.698970004336018	(IGP31)	    .15	[0.085-0.207] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p15.4	11	5604373	NR	TRIM6;TRIM6-TRIM34;LOC101927800			117854;445372;101927800			rs7108470-G	rs7108470	0	7108470	intron;intron;intron	0	0.423505770703473	3E-6	5.522878745280337	(IGP31)	    .15	[0.088-0.215] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	81261988	SLC38A10	SLC38A10			124565			rs7224668-C	rs7224668	0	7224668	intron	0	0.524575415405165	3E-8	7.522878745280337	(IGP31)	    .17	[0.11-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176763000890472	4E-7	6.397940008672037	(IGP31)	    .22	[0.14-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q22	17	58236543	NR	LPO			4025			rs8067912-C	rs8067912	0	8067912	nearGene-5	0	0.0307230178539626	5E-7	6.30102999566398	(IGP31)	    .46	[0.28-0.63] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.699319077951002	3E-37	36.52287874528034	(IGP32)	    .45	[0.38-0.52] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	95926809	NR	ELL2			22936			rs11738945-C	rs11738945	0	11738945	intron	0	0.785892907349666	1E-6	5.999999999999999	(IGP32)	    .18	[0.11-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q26	6	161893889	NR	PARK2			5071			rs12207186-T	rs12207186	0	12207186	intron	0	0.0677100908685969	5E-6	5.301029995663981	(IGP32)	    .29	[0.16-0.41] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p21.3	1	94256104	NR	ARHGAP29 - GAPDHP29	9411	441893		       18.35	       45.87	rs12750249-C	rs12750249	0	12750249	Intergenic	1	0.256632781737194	4E-6	5.397940008672037	(IGP32)	    .17	[0.095-0.235] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q24.23	8	136837768	NR	MAPRE1P1 - FLJ45872	80327	401478		     1211.74	      971.66	rs16906415-G	rs16906415	0	16906415	Intergenic	1	0.107822580400891	6E-6	5.221848749616356	(IGP32)	    .23	[0.13-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5p14.1	5	25419980	NR	CDH10 - MSNP1	1008	4479		      775.00	      489.33	rs1904173-G	rs1904173	0	1904173	Intergenic	1	0.86006371714922	7E-6	5.154901959985742	(IGP32)	    .20	[0.11-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q23.2	11	114516380	NR	REXO2 - NXPE1	25996	120400		       66.10	        5.34	rs4466877-G	rs4466877	0	4466877	Intergenic	1	0.880799535011136	9E-7	6.045757490560675	(IGP32)	    .24	[0.15-0.34] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p11.23	20	20653462	NR	RALGAPA2			57186			rs6132333-C	rs6132333	0	6132333	intron	0	0.0250837167483296	3E-6	5.522878745280337	(IGP32)	    .51	[0.29-0.72] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176843186191537	9E-15	14.04575749056067	(IGP32)	    .34	[0.25-0.42] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30830214	NR	LINC00243			401247			rs7749924-C	rs7749924	0	7749924	intron	0	0.851598582628062	8E-6	5.096910013008055	(IGP32)	    .22	[0.12-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p12.2	10	23014324	NR	ARMC3			219681			rs1054052-T	rs1054052	0	1054052	intron	0	0.28422493357111	6E-6	5.221848749616356	(IGP33)	    .16	[0.089-0.224] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q21.3	10	63107152	NR	EGR2 - NRBF2	1959	29982		      213.64	       26.10	rs10995439-G	rs10995439	0	10995439	Intergenic	1	0.500403761034329	1E-7	7	(IGP33)	    .16	[0.1-0.22] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		21q22.13	21	37445510	NR	DYRK1A			1859			rs11700462-G	rs11700462	0	11700462	intron	0	0.89698245367811	5E-6	5.301029995663981	(IGP33)	    .28	[0.16-0.4] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q24.33	12	129162056	NR	TMEM132D			121256			rs12580533-C	rs12580533	0	12580533	intron	0	0.014010396137832	8E-6	5.096910013008055	(IGP33)	    .82	[0.46-1.19] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q11.23	20	38349567	NR	LBP			3929			rs1739654-G	rs1739654	0	1739654		0	0.958833931431119	5E-6	5.301029995663981	(IGP33)	    .45	[0.26-0.64] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q26.3	15	99817230	NR	DNM1P46 - ADAMTS17	196968	170691		       10.30	      154.21	rs1823874-C	rs1823874	0	1823874	Intergenic	1	0.428499305840392	3E-6	5.522878745280337	(IGP33)	    .15	[0.086-0.209] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q32.33	14	104883051	NR	CEP170B			283638			rs2028414-C	rs2028414	0	2028414	cds-synon	0	0.635674106107891	8E-6	5.096910013008055	(IGP33)	    .14	[0.079-0.201] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p11.23	20	20653462	NR	RALGAPA2			57186			rs6132333-C	rs6132333	0	6132333	intron	0	0.0251061037895675	7E-7	6.154901959985743	(IGP33)	    .54	[0.33-0.75] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q21.3	10	63107152	NR	EGR2 - NRBF2	1959	29982		      213.64	       26.10	rs10995439-G	rs10995439	0	10995439	Intergenic	1	0.500403761034329	3E-6	5.522878745280337	(IGP34)	    .14	[0.084-0.205] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	28181087	NR	LINGO2			158038			rs1319535-C	rs1319535	0	1319535	intron	0	0.345300509585377	9E-6	5.045757490560675	(IGP34)	    .15	[0.081-0.21] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p21.3	7	12179909	NR	THSD7A - TMEM106B	221981	54664		      347.71	       31.29	rs17594709-G	rs17594709	0	17594709	Intergenic	1	0.283855287561302	5E-6	5.301029995663981	(IGP34)	    .16	[0.09-0.225] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	51877490	NR	HMGB1P47 - KATNBL1P4	100873897	100128982		      467.29	       53.32	rs17835853-G	rs17835853	0	17835853	Intergenic	1	0.956751274008025	6E-6	5.221848749616356	(IGP34)	    .47	[0.27-0.67] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q12	20	40849893	NR	MAFB - RNA5SP484	9935	100873726		      160.65	        4.23	rs6102185-G	rs6102185	0	6102185	Intergenic	1	0.422547655372269	5E-6	5.301029995663981	(IGP34)	    .14	[0.082-0.204] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p11.23	20	20653462	NR	RALGAPA2			57186			rs6132333-C	rs6132333	0	6132333	intron	0	0.0251061037895675	8E-6	5.096910013008055	(IGP34)	    .49	[0.28-0.71] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q23.3	8	115318626	NR	RPL18P7 - TRPS1	100270945	7227		     1941.34	       89.87	rs6983039-G	rs6983039	0	6983039	Intergenic	1	0.971469000267499	9E-6	5.045757490560675	(IGP34)	    .44	[0.25-0.64] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.298878222915738	2E-10	9.698970004336017	(IGP34)	    .21	[0.15-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p14.2	7	37027790	NR	ELMO1			9844			rs10488029-G	rs10488029	0	10488029	intron	0	0.10578790637539	4E-6	5.397940008672037	(IGP35)	    .23	[0.13-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q12	12	38859306	NR	CPNE8			144402			rs11169838-C	rs11169838	0	11169838	intron	0	0.680712065091395	8E-6	5.096910013008055	(IGP35)	    .17	[0.094-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.699243829246545	5E-44	43.30102999566398	(IGP35)	    .49	[0.42-0.56] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q24.23	8	136837768	NR	MAPRE1P1 - FLJ45872	80327	401478		     1211.74	      971.66	rs16906415-G	rs16906415	0	16906415	Intergenic	1	0.107695718234507	3E-6	5.522878745280337	(IGP35)	    .24	[0.14-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q12.1	22	26645319	NR	ISCA2P1			100287193			rs16982515-C	rs16982515	0	16982515		0	0.919024750334374	3E-6	5.522878745280337	(IGP35)	    .31	[0.18-0.44] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	81194468	NR	CEP131			22994			rs2279913-C	rs2279913	0	2279913	intron	0	0.439263302273741	4E-7	6.397940008672037	(IGP35)	    .16	[0.097-0.219] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12p13.2	12	11809639	NR	ETV6			2120			rs7314811-C	rs7314811	0	7314811	intron	0	0.35010278555506	4E-6	5.397940008672037	(IGP35)	    .15	[0.083-0.207] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176986749442711	7E-17	16.15490195998574	(IGP35)	    .37	[0.28-0.45] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	95937706	NR	ELL2			22936			rs7700895-T	rs7700895	0	7700895	intron	0	0.783746748105216	1E-6	5.999999999999999	(IGP35)	    .18	[0.11-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q22	17	58236543	NR	LPO			4025			rs8067912-C	rs8067912	0	8067912	nearGene-5	0	0.0305423055728934	1E-6	5.999999999999999	(IGP35)	    .44	[0.26-0.62] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q23.2	11	114519384	NR	REXO2 - NXPE1	25996	120400		       69.11	        2.33	rs9326244-C	rs9326244	0	9326244	Intergenic	1	0.878929753455194	5E-7	6.30102999566398	(IGP35)	    .24	[0.14-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p12.2	10	23014324	NR	ARMC3			219681			rs1054052-T	rs1054052	0	1054052	intron	0	0.285274903125	6E-7	6.221848749616355	(IGP36)	    .17	[0.1-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698889241071429	2E-6	5.698970004336018	(IGP36)	    .17	[0.099-0.237] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q25	11	134703916	NR	B3GAT1 - A1BG	27087			      291.93		rs11825685-C	rs11825685	0	11825685	Intergenic	1	0.889723712633929	9E-6	5.045757490560675	(IGP36)	    .23	[0.13-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33124874	B4GALT1	B4GALT1			2683			rs12342831-C	rs12342831	0	12342831	intron	0	0.2625544125	1E-10	10	(IGP36)	    .23	[0.16-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q24.1	10	95535832	NR	SORBS1			10580			rs12772243-G	rs12772243	0	12772243	intron	0	0.0871224178571429	5E-6	5.301029995663981	(IGP36)	    .25	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q31.1	5	135828929	NR	MIR5692C1 - SLC25A48	100847082	153328		       25.85	        5.75	rs13178541-C	rs13178541	0	13178541	Intergenic	1	0.811571763392857	5E-6	5.301029995663981	(IGP36)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p12.1	10	25591530	NR	GPR158			57512			rs17558301-C	rs17558301	0	17558301	intron	0	0.961067	7E-6	5.154901959985742	(IGP36)	   1.59	[0.9-2.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q22	17	56046612	NR	PCTP - ANKFN1	58488	162282		      203.46	      106.86	rs2060070-G	rs2060070	0	2060070	Intergenic	1	0.76230421875	9E-7	6.045757490560675	(IGP36)	    .18	[0.11-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q24.2	11	127240288	NR	KIRREL3-AS3 - ETS1	283165	2113		      234.23	     1218.47	rs2514895-C	rs2514895	0	2514895	Intergenic	1	0.812138921875	2E-6	5.698970004336018	(IGP36)	    .19	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p14.2	3	62796793	NR	CADPS			8618			rs304172-G	rs304172	0	304172	intron	0	0.956126387053571	8E-6	5.096910013008055	(IGP36)	    .33	[0.19-0.48] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q12	6	65468587	NR	EYS			346007			rs4710520-C	rs4710520	0	4710520	intron	0	0.00803558	6E-6	5.221848749616356	(IGP36)	   2.11	[1.2-3.02] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39445695	NR	MGAT3			4248			rs5757676-C	rs5757676	0	5757676	nearGene-5	0	0.775682419642857	1E-7	7	(IGP36)	    .20	[0.12-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p11.2	2	84217762	NR	ST6GALNAC2P1 - FUNDC2P2	100422716	388965		      177.00	       72.92	rs6547537-G	rs6547537	0	6547537	Intergenic	1	0.784824532589286	4E-6	5.397940008672037	(IGP36)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p15.1	11	19030325	NR	MRGPRX1 - MRGPRX2	259249	117194		       95.32	       24.13	rs7111562-C	rs7111562	0	7111562	Intergenic	1	0.139875874553571	2E-6	5.698970004336018	(IGP36)	    .23	[0.13-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p12.2	10	23014324	NR	ARMC3			219681			rs1054052-T	rs1054052	0	1054052	intron	0	0.285370675591254	3E-6	5.522878745280337	(IGP37)	    .16	[0.094-0.231] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698797577867024	8E-17	16.09691001300806	(IGP37)	    .29	[0.22-0.36] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q22	17	56046612	NR	PCTP - ANKFN1	58488	162282		      203.46	      106.86	rs2060070-G	rs2060070	0	2060070	Intergenic	1	0.761979803659081	2E-6	5.698970004336018	(IGP37)	    .17	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33139455	NR	B4GALT1			2683			rs3780486-C	rs3780486	0	3780486	intron	0	0.737437251227131	9E-11	10.04575749056067	(IGP37)	    .23	[0.16-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q12	6	65468587	NR	EYS			346007			rs4710520-C	rs4710520	0	4710520	intron	0	0.00804562	3E-6	5.522878745280337	(IGP37)	   2.17	[1.26-3.08] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.1	1	79043424	NR	ELTD1 - PSAT1P3	64123	729779		       36.61	       11.52	rs6687262-C	rs6687262	0	6687262	Intergenic	1	0.553310385988398	4E-7	6.397940008672037	(IGP37)	    .16	[0.097-0.219] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176702207496653	5E-8	7.30102999566398	(IGP37)	    .24	[0.15-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p12.2	10	23014324	NR	ARMC3			219681			rs1054052-T	rs1054052	0	1054052	intron	0	0.285116272403032	2E-6	5.698970004336018	(IGP38)	    .17	[0.098-0.234] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698840198840838	5E-17	16.30102999566398	(IGP38)	    .29	[0.23-0.36] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q21.1	5	99380064	NR	RPS9P3 - GUSBP8	100133054	441066		      425.06	      152.56	rs11745890-C	rs11745890	0	11745890	Intergenic	1	0.0301678793134195	4E-6	5.397940008672037	(IGP38)	    .55	[0.32-0.78] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q22	17	56046612	NR	PCTP - ANKFN1	58488	162282		      203.46	      106.86	rs2060070-G	rs2060070	0	2060070	Intergenic	1	0.761965887650468	2E-6	5.698970004336018	(IGP38)	    .17	[0.1-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33139455	NR	B4GALT1			2683			rs3780486-C	rs3780486	0	3780486	intron	0	0.737450810521623	5E-11	10.30102999566398	(IGP38)	    .23	[0.16-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q12	6	65468587	NR	EYS			346007			rs4710520-C	rs4710520	0	4710520	intron	0	0.00803558	5E-6	5.301029995663981	(IGP38)	   2.13	[1.21-3.04] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.1	1	79043424	NR	ELTD1 - PSAT1P3	64123	729779		       36.61	       11.52	rs6687262-C	rs6687262	0	6687262	Intergenic	1	0.553040158270174	5E-7	6.30102999566398	(IGP38)	    .16	[0.096-0.218] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187005156	ST6GAL1	ST6GAL1			6480			rs7652995-G	rs7652995	0	7652995	intron	0	0.176770524297815	5E-8	7.30102999566398	(IGP38)	    .24	[0.15-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33128023	NR	B4GALT1			2683			rs10813951-G	rs10813951	0	10813951	intron	0	0.262554376171352	1E-9	8.999999999999998	(IGP39)	    .22	[0.15-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q26.12	10	120283977	NR	NACAP2 - RPL21P16	651144	729402		      286.23	       70.67	rs11199254-C	rs11199254	0	11199254	Intergenic	1	0.994452838362069	3E-6	5.522878745280337	(IGP39)	   1.56	[0.9-2.21] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q11.22	7	69773172	NR	AUTS2			26053			rs11765886-C	rs11765886	0	11765886	intron	0	0.665165836680053	4E-6	5.397940008672037	(IGP39)	    .16	[0.094-0.231] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39343633	NR	SNORD43 - SYNGR1	26807	9145		       24.52	        6.32	rs137686-C	rs137686	0	137686	Intergenic	1	0.24173856626506	1E-11	11	(IGP39)	    .25	[0.18-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189518247657296	1E-10	10	(IGP39)	    .27	[0.19-0.35] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q32.2	14	99279937	NR	BCL11B - SETD3	64919	84193		        8.22	      117.81	rs2614463-T	rs2614463	0	2614463	Intergenic	1	0.396310788487282	7E-6	5.154901959985742	(IGP39)	    .17	[0.098-0.249] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q16.3	6	104215903	NR	NPM1P10 - HACE1	10837	57531		      189.04	      512.19	rs2744203-C	rs2744203	0	2744203	Intergenic	1	0.0959963838018742	7E-6	5.154901959985742	(IGP39)	    .23	[0.13-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17848636	NR	BANF2 - SNX5	140836	27131		      112.76	       92.96	rs2745851-G	rs2745851	0	2745851	Intergenic	1	0.63954583935743	1E-6	5.999999999999999	(IGP39)	    .16	[0.093-0.22] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q23.3	1	161856825	NR	ATF6			22926			rs3767633-T	rs3767633	0	3767633	intron	0	0.145416417670683	8E-6	5.096910013008055	(IGP39)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39576157	NR	CACNA1I			8911			rs3788556-C	rs3788556	0	3788556	intron	0	0.56038034270415	5E-8	7.30102999566398	(IGP39)	    .18	[0.12-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q22.1	6	114748553	NR	DNAJA1P4 - FRK	728614	2444		      397.90	     1192.98	rs6928844-C	rs6928844	0	6928844	Intergenic	1	0.828187721552878	4E-6	5.397940008672037	(IGP39)	    .29	[0.16-0.41] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.298476014725569	9E-24	23.04575749056067	(IGP39)	    .34	[0.27-0.4] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q32.11	14	89760907	NR	CHORDC2P - EFCAB11	317775	90141		       22.47	       34.08	rs2093746-C	rs2093746	0	2093746	Intergenic	1	0.265059655250113	3E-7	6.522878745280337	(IGP4)	    .29	[0.18-0.4] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p15.4	11	7443141	NR	SYT9;LOC100506258			143425;100506258			rs4076555-C	rs4076555	0	4076555	intron;intron	0	0.336591107706174	7E-6	5.154901959985742	(IGP4)	    .16	[0.09-0.229] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q25.1	15	79241030	NR	LOC729911			729911			rs4779031-C	rs4779031	0	4779031	intron	0	0.211701583145561	2E-6	5.698970004336018	(IGP4)	    .18	[0.11-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q25.2	3	153760634	NR	C3orf79 - RPL21P42	152118	100271162		      257.94	      263.16	rs6794649-C	rs6794649	0	6794649	Intergenic	1	0.159420807120324	1E-6	5.999999999999999	(IGP4)	    .21	[0.12-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33128023	NR	B4GALT1			2683			rs10813951-G	rs10813951	0	10813951	intron	0	0.262743396083667	5E-10	9.301029995663981	(IGP40)	    .22	[0.15-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q32	9	112925455	NR	SLC46A2 - MUPP	57864	100129193		       34.54	       33.68	rs10817408-C	rs10817408	0	10817408	Intergenic	1	0.149460512683578	7E-6	5.154901959985742	(IGP40)	    .22	[0.13-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q26.12	10	120283977	NR	NACAP2 - RPL21P16	651144	729402		      286.23	       70.67	rs11199254-C	rs11199254	0	11199254	Intergenic	1	0.994468962750716	2E-6	5.698970004336018	(IGP40)	   1.56	[0.91-2.21] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q11.22	7	69773172	NR	AUTS2			26053			rs11765886-C	rs11765886	0	11765886	intron	0	0.66506290565198	5E-6	5.301029995663981	(IGP40)	    .16	[0.091-0.228] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q12.3	22	32387917	NR	RTCB			51493			rs12530-C	rs12530	0	12530	UTR-3	0	0.18432396929239	3E-6	5.522878745280337	(IGP40)	    .18	[0.11-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13488217	NR	BEND7			222389			rs17153352-T	rs17153352	0	17153352	intron	0	0.822655938139742	7E-6	5.154901959985742	(IGP40)	    .20	[0.12-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	1E-10	10	(IGP40)	    .27	[0.18-0.35] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q32.2	14	99275850	NR	BCL11B - SETD3	64919	84193		        4.14	      121.90	rs2664299-C	rs2664299	0	2664299	Intergenic	1	0.404780828660436	9E-6	5.045757490560675	(IGP40)	    .17	[0.094-0.241] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17848636	NR	BANF2 - SNX5	140836	27131		      112.76	       92.96	rs2745851-G	rs2745851	0	2745851	Intergenic	1	0.639172889630619	4E-6	5.397940008672037	(IGP40)	    .15	[0.085-0.212] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p25.3	3	11191093	NR	HRH1			3269			rs4684059-C	rs4684059	0	4684059	intron	0	0.369267114374722	8E-6	5.096910013008055	(IGP40)	    .17	[0.095-0.243] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q22.1	6	114748553	NR	DNAJA1P4 - FRK	728614	2444		      397.90	     1192.98	rs6928844-C	rs6928844	0	6928844	Intergenic	1	0.828248277703605	7E-6	5.154901959985742	(IGP40)	    .28	[0.16-0.4] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299013119715176	1E-24	24	(IGP40)	    .34	[0.28-0.41] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q12.1	2	102772135	NR	TMEM182			130827			rs12465996-C	rs12465996	0	12465996	intron	0	0.864380324681238	5E-6	5.301029995663981	(IGP41)	    .24	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17p11.2	17	17239582	NR	FLCN - POTENP	201163	441783		        2.39	        2.43	rs12600635-G	rs12600635	0	12600635	Intergenic	1	0.145679882058288	4E-7	6.397940008672037	(IGP41)	    .22	[0.14-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32706960	NR	TRNAI25			100189401			rs1794265-C	rs1794265	0	1794265		0	0.945425811930783	3E-7	6.522878745280337	(IGP41)	    .34	[0.21-0.48] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16p12.3	16	20019883	NR	GPRC5B - GPR139	51704	124274		      133.84	       11.78	rs2764743-T	rs2764743	0	2764743	Intergenic	1	0.936472894262295	8E-7	6.096910013008056	(IGP41)	    .35	[0.21-0.48] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		21q22.3	21	41421864	NR	MX1			4599			rs459482-C	rs459482	0	459482	UTR-5	0	0.594327337431694	3E-7	6.522878745280337	(IGP41)	    .16	[0.1-0.22] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31834688	NR	SNORD48;C6orf48			26801;50854			rs4711279-C	rs4711279	0	4711279	nearGene-5;nearGene-5	0	0.824607758652095	1E-6	5.999999999999999	(IGP41)	    .19	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q13.2	11	68164294	SUV420H1	SUV420H1			51111			rs4930561-G	rs4930561	0	4930561	intron	0	0.511382618397086	9E-10	9.045757490560675	(IGP41)	    .19	[0.13-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12p13.31	12	7182217	NR	CLSTN3 - PEX5	9746	5830		       23.27	        6.95	rs7973719-C	rs7973719	0	7973719	Intergenic	1	0.487491611566485	4E-8	7.397940008672037	(IGP41)	    .18	[0.11-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q21.1	18	48714340	NR	CTIF			9811			rs9947954-C	rs9947954	0	9947954	intron	0	0.425160203096539	8E-6	5.096910013008055	(IGP41)	    .14	[0.078-0.201] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q22.3	18	75185206	NR	ZNF407 - ZADH2	55628	284273		      119.53	       12.12	rs9948784-G	rs9948784	0	9948784	Intergenic	1	0.9873229	2E-6	5.698970004336018	(IGP41)	   1.77	[1.04-2.5] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32759026	HLA-DQA2, HLA-DQB2	HLA-DQB2			3120			rs1049110-C	rs1049110	0	1049110	missense	0	0.346381764494382	2E-8	7.698970004336018	(IGP42)	    .19	[0.12-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q36.1	7	151217985	ABCF2,SMARCD3	ABCF2			10061			rs1122979-G	rs1122979	0	1122979	intron	0	0.874862054831461	1E-9	8.999999999999998	(IGP42)	    .30	[0.2-0.39] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p12	8	31176759	NR	WRN - KCTD9P6	7486	642513		        3.00	       43.26	rs11774682-C	rs11774682	0	11774682	Intergenic	1	0.966180189368771	3E-6	5.522878745280337	(IGP42)	    .80	[0.47-1.14] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.391170597752809	3E-21	20.52287874528034	(IGP42)	    .30	[0.24-0.37] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30711851	NR	MDC1			9656			rs3094093-T	rs3094093	0	3094093	intron	0	0.107325880449438	3E-6	5.522878745280337	(IGP42)	    .23	[0.14-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32985503	NR	TRNAI25			100189401			rs3097645-C	rs3097645	0	3097645		0	0.874270331235955	2E-6	5.698970004336018	(IGP42)	    .22	[0.13-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31962664	NR	SKIV2L			6499			rs592229-G	rs592229	0	592229	intron	0	0.370399655280899	4E-6	5.397940008672037	(IGP42)	    .15	[0.088-0.219] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q13.3	15	33201020	NR	HNRNPA1P71 - TMCO5B	100421433	100652857		      187.96	       35.46	rs6494964-G	rs6494964	0	6494964	Intergenic	1	0.685883860674157	8E-6	5.096910013008055	(IGP42)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.636802753258427	7E-10	9.154901959985741	(IGP42)	    .20	[0.13-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q31.1	5	132386057	NR	SLC22A5			6584			rs7731390-C	rs7731390	0	7731390	intron	0	0.947771454651685	2E-6	5.698970004336018	(IGP42)	    .38	[0.23-0.54] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q32.3	1	214283666	NR	SMYD2			56950			rs9308433-C	rs9308433	0	9308433	intron	0	0.408306478651685	2E-6	5.698970004336018	(IGP42)	    .15	[0.088-0.211] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q21.3	5	108396257	NR	FBXL17 - RPS20P3	64839	6225		       13.69	      197.23	rs1001579-G	rs1001579	0	1001579	Intergenic	1	0.167464012461059	7E-6	5.154901959985742	(IGP43)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p25.3	2	1554155	NR	TPO - PXDN	7173	7837		       10.48	       77.73	rs10206020-C	rs10206020	0	10206020	Intergenic	1	0.188382478860703	3E-6	5.522878745280337	(IGP43)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33153529	NR	B4GALT1			2683			rs10813957-G	rs10813957	0	10813957	intron	0	0.738414638629283	7E-6	5.154901959985742	(IGP43)	    .16	[0.09-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q21.1	18	48701073	NR	CTIF			9811			rs16949825-C	rs16949825	0	16949825	intron	0	0.902274750778816	3E-6	5.522878745280337	(IGP43)	    .25	[0.15-0.36] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836731980863373	3E-10	9.522878745280336	(IGP43)	    .28	[0.19-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	114101050	NR	FOXP2			93986			rs6466479-G	rs6466479	0	6466479	intron	0	0.122643248331108	6E-6	5.221848749616356	(IGP43)	    .22	[0.12-0.31] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p22	8	14256307	NR	SGCZ			137868			rs9886428-G	rs9886428	0	9886428	intron	0	0.455051607476636	1E-6	5.999999999999999	(IGP43)	    .15	[0.088-0.208] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q32.11	14	89760907	NR	CHORDC2P - EFCAB11	317775	90141		       22.47	       34.08	rs2093746-C	rs2093746	0	2093746	Intergenic	1	0.265047574785359	2E-7	6.698970004336019	(IGP44)	    .29	[0.18-0.4] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		19q13.42	19	53276773	NR	VN1R4 - FAM90A27P	317703	646508		        9.11	        5.52	rs2965260-C	rs2965260	0	2965260	Intergenic	1	0.898395713962946	9E-6	5.045757490560675	(IGP44)	    .23	[0.13-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q15	6	89948064	BACH2	BACH2			60468			rs404256-C	rs404256	0	404256	intron	0	0.55888563217352	5E-6	5.301029995663981	(IGP44)	    .17	[0.095-0.237] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q25.2	3	153760634	NR	C3orf79 - RPL21P42	152118	100271162		      257.94	      263.16	rs6794649-C	rs6794649	0	6794649	Intergenic	1	0.159404027112517	2E-6	5.698970004336018	(IGP44)	    .20	[0.12-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p15.31	4	21204867	NR	KCNIP4			80333			rs1023721-T	rs1023721	0	1023721	intron	0	0.941491348153093	1E-6	5.999999999999999	(IGP45)	    .31	[0.19-0.44] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q36.1	7	151217985	ABCF2,SMARCD3	ABCF2			10061			rs1122979-G	rs1122979	0	1122979	intron	0	0.875396395193591	6E-10	9.221848749616356	(IGP45)	    .30	[0.21-0.4] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q11.21	8	50472427	NR	SNTG1			54212			rs13272236-G	rs13272236	0	13272236	intron	0	0.0367158118323747	6E-7	6.221848749616355	(IGP45)	    .84	[0.51-1.17] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q22.32	9	96054202	NR	LINC00092 - EIF4BP3	100188953	100128771		       32.45	       91.81	rs1547201-C	rs1547201	0	1547201	Intergenic	1	0.530022081441923	7E-6	5.154901959985742	(IGP45)	    .14	[0.08-0.203] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56028975	NR	FLJ31104 - ANKRD55	441072	79722		       25.33	       70.70	rs16884711-C	rs16884711	0	16884711	Intergenic	1	0.188959846461949	3E-6	5.522878745280337	(IGP45)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q31.2	1	191970658	NR	HNRNPA1P46 - RGS18	100421399	64407		      823.64	      187.80	rs17403780-T	rs17403780	0	17403780	Intergenic	1	0.910603886426346	6E-6	5.221848749616356	(IGP45)	    .31	[0.18-0.45] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	4E-6	5.397940008672037	(IGP45)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q21.3	14	47584956	NR	MDGA2			161357			rs4143912-G	rs4143912	0	4143912	intron	0	0.417046732532265	7E-6	5.154901959985742	(IGP45)	    .14	[0.08-0.205] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p13	20	569274	NR	CSNK2A1 - TCF15	1457	6939		       25.44	       34.72	rs6084946-C	rs6084946	0	6084946	Intergenic	1	0.233844371161549	5E-6	5.301029995663981	(IGP45)	    .22	[0.12-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q21.2	10	61935289	NR	ARID5B			84159			rs6479779-C	rs6479779	0	6479779	intron	0	0.345248463284379	1E-6	5.999999999999999	(IGP45)	    .19	[0.12-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50306538	NR	IKZF1			10320			rs7781977-C	rs7781977	0	7781977	intron	0	0.695324747663551	5E-7	6.30102999566398	(IGP45)	    .17	[0.1-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.31	22	43808439	NR	EFCAB6			64800			rs8140172-C	rs8140172	0	8140172	intron	0	0.985708288681948	6E-6	5.221848749616356	(IGP45)	    .88	[0.5-1.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299013119715176	3E-13	12.52287874528034	(IGP45)	    .25	[0.18-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q21.13	7	89065756	NR	ZNF804B			219578			rs10236237-T	rs10236237	0	10236237	intron	0	0.267777818671454	5E-6	5.301029995663981	(IGP46)	    .16	[0.092-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q21.32	17	47757912	NR	TBX21 - OSBPL7	30009	114881		       11.79	       49.46	rs11651000-G	rs11651000	0	11651000	Intergenic	1	0.83992863016158	9E-6	5.045757490560675	(IGP46)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	NR	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.393307344254937	2E-13	12.69897000433602	(IGP46)	    .23	[0.17-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q26	4	116928293	NR	HAVCR1P2 - TRAM1L1	100421002	133022		       69.32	      155.26	rs2389339-G	rs2389339	0	2389339	Intergenic	1	0.790110045780969	2E-6	5.698970004336018	(IGP46)	    .18	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.637533007630161	4E-8	7.397940008672037	(IGP46)	    .17	[0.11-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187008099	ST6GAL1	ST6GAL1			6480			rs11710456-G	rs11710456	0	11710456	intron	0	0.698919993324432	5E-6	5.301029995663981	(IGP47)	    .16	[0.092-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q13.2	3	113711752	NR	KIAA2018 - NAA50	205717	80218		       15.11	        4.71	rs11711311-G	rs11711311	0	11711311	Intergenic	1	0.396079672452158	4E-7	6.397940008672037	(IGP47)	    .16	[0.1-0.227] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q36.3	2	229485273	NR	DNER			92737			rs11890081-C	rs11890081	0	11890081	intron	0	0.0172129438807299	8E-6	5.096910013008055	(IGP47)	    .68	[0.38-0.98] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q13.3	8	70632513	NR	LOC286190			286190			rs13272623-G	rs13272623	0	13272623	intron	0	0.154915348909657	2E-6	5.698970004336018	(IGP47)	    .22	[0.13-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q13.11	3	103794592	NR	MIR548AB - RAP1BP2	100616336	100128179		      270.48	      268.30	rs1673866-C	rs1673866	0	1673866	Intergenic	1	0.63878196306186	7E-6	5.154901959985742	(IGP47)	    .14	[0.081-0.206] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q21.1	10	51502873	NR	PRKG1			5592			rs1952138-C	rs1952138	0	1952138	intron	0	0.766987149087672	3E-6	5.522878745280337	(IGP47)	    .17	[0.1-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q31.1	2	176147850	NR	HOXD3			3232			rs4972806-C	rs4972806	0	4972806	intron	0	0.635161429906542	8E-6	5.096910013008055	(IGP47)	    .14	[0.08-0.205] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q23.3	12	103640541	NR	STAB2			55576			rs1650123-C	rs1650123	0	1650123	intron	0	0.577816124610592	1E-6	5.999999999999999	(IGP48)	    .16	[0.097-0.229] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q25.1	3	150979421	NR	CLRN1-AS1			116933			rs16863118-C	rs16863118	0	16863118	intron	0	0.836539205162439	7E-7	6.154901959985743	(IGP48)	    .20	[0.12-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p16.1	2	55746597	NR	PNPT1 - EFEMP1	87178	2202		       52.69	      119.37	rs2163237-C	rs2163237	0	2163237	Intergenic	1	0.671727695594125	5E-6	5.301029995663981	(IGP48)	    .15	[0.087-0.217] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p22.1	7	5840746	NR	ZNF815P			401303			rs308097-G	rs308097	0	308097	ncRNA	0	0.966564075211393	2E-6	5.698970004336018	(IGP48)	    .43	[0.25-0.61] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	107802941	NR	SLC26A3			1811			rs4730268-C	rs4730268	0	4730268	intron	0	0.783243083222074	5E-6	5.301029995663981	(IGP48)	    .17	[0.096-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q23.3	16	81927353	NR	PLCG2			5336			rs3813009-C	rs3813009	0	3813009	intron	0	0.223729928793947	4E-6	5.397940008672037	(IGP48)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p24.3	3	20916318	NR	RNY4P22 - VENTXP7	100873800	391518		      723.44	      489.41	rs6787231-C	rs6787231	0	6787231	Intergenic	1	0.900662045838896	5E-6	5.301029995663981	(IGP48)	    .26	[0.15-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16p12.3	16	17968279	NR	RPL7P47 - NPIPA8	146110	101059953		       34.93	      349.64	rs7194356-C	rs7194356	0	7194356	Intergenic	1	0.895432401869159	7E-6	5.154901959985742	(IGP48)	    .23	[0.13-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q24.3	8	141939370	NR	MIR1302-7 - MIR4472-1	100302147	100616268		      153.06	      236.97	rs7845056-C	rs7845056	0	7845056	Intergenic	1	0.409235014686248	9E-6	5.045757490560675	(IGP48)	    .18	[0.099-0.256] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q23.1	6	130565292	NR	TMEM200A - SMLR1	114801	100507203		      121.87	      262.11	rs9492645-G	rs9492645	0	9492645	Intergenic	1	0.947434826924789	7E-6	5.154901959985742	(IGP48)	    .33	[0.19-0.47] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13313131	NR	PHYH - SEPHS1	5264	22929		       12.99	        4.30	rs1095368-C	rs1095368	0	1095368	Intergenic	1	0.437467493541203	7E-7	6.154901959985743	(IGP49)	    .15	[0.092-0.213] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q25	4	109976429	NR	EGF			1950			rs11568995-G	rs11568995	0	11568995	intron	0	0.9884981	4E-7	6.397940008672037	(IGP49)	   1.80	[1.11-2.5] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		21q22.11	21	31923801	NR	HUNK			30811			rs11910494-G	rs11910494	0	11910494	intron	0	0.288747077060134	8E-6	5.096910013008055	(IGP49)	    .15	[0.083-0.213] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q33.3	5	157983270	NR	RPLP2P2 - MARK2P11	644198	100421484		       51.65	        1.37	rs11958404-T	rs11958404	0	11958404	Intergenic	1	0.113988281514477	8E-6	5.096910013008055	(IGP49)	    .23	[0.13-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q43	1	239233804	NR	RPL39P10 - CHRM3	100129952	1131		      180.85	      152.77	rs1339738-C	rs1339738	0	1339738	Intergenic	1	0.0857549797772829	7E-6	5.154901959985742	(IGP49)	    .29	[0.16-0.42] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189660889532294	7E-16	15.15490195998574	(IGP49)	    .34	[0.25-0.42] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q25.3	17	78315910	NR	THA1P - SOCS3	390816	9021		       59.73	       40.87	rs4789580-G	rs4789580	0	4789580	Intergenic	1	0.203878510467706	9E-6	5.045757490560675	(IGP49)	    .23	[0.13-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p14	4	37643767	NR	RELL1			768211			rs4832928-C	rs4832928	0	4832928	intron	0	0.701397954120267	2E-6	5.698970004336018	(IGP49)	    .16	[0.096-0.229] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q35.1	4	182379461	NR	TENM3			55714			rs4862046-G	rs4862046	0	4862046	intron	0	0.907610376436526	6E-7	6.221848749616355	(IGP49)	    .28	[0.17-0.39] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.31	22	44165407	NR	PARVB			29780			rs5764106-C	rs5764106	0	5764106	intron	0	0.229970760801782	2E-6	5.698970004336018	(IGP49)	    .20	[0.12-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q41	1	216330927	NR	USH2A			7399			rs7532570-G	rs7532570	0	7532570	intron	0	0.0626114699331849	6E-6	5.221848749616356	(IGP49)	    .29	[0.17-0.42] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299056983073497	3E-9	8.522878745280337	(IGP49)	    .20	[0.13-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p16.1	2	59562570	NR	LINC01122 - RNA5SP94	400955	100873327		      498.80	      132.19	rs10203166-C	rs10203166	0	10203166	Intergenic	1	0.974135912544803	4E-6	5.397940008672037	(IGP5)	    .80	[0.46-1.14] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p15.31	4	21204867	NR	KCNIP4			80333			rs1023721-T	rs1023721	0	1023721	intron	0	0.941465292386465	1E-6	5.999999999999999	(IGP5)	    .31	[0.19-0.44] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q36.1	7	151217985	ABCF2,SMARCD3	ABCF2			10061			rs1122979-G	rs1122979	0	1122979	intron	0	0.875342207034728	2E-9	8.698970004336019	(IGP5)	    .29	[0.2-0.39] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q11.21	8	50472427	NR	SNTG1			54212			rs13272236-G	rs13272236	0	13272236	intron	0	0.0365154950657895	2E-6	5.698970004336018	(IGP5)	    .79	[0.46-1.11] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q22.32	9	96054202	NR	LINC00092 - EIF4BP3	100188953	100128771		       32.45	       91.81	rs1547201-C	rs1547201	0	1547201	Intergenic	1	0.530244325912734	4E-6	5.397940008672037	(IGP5)	    .14	[0.083-0.206] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56028975	NR	FLJ31104 - ANKRD55	441072	79722		       25.33	       70.70	rs16884711-C	rs16884711	0	16884711	Intergenic	1	0.189044272039181	2E-6	5.698970004336018	(IGP5)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q21.3	14	47584956	NR	MDGA2			161357			rs4143912-G	rs4143912	0	4143912	intron	0	0.416787130454141	6E-6	5.221848749616356	(IGP5)	    .14	[0.081-0.206] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368136455031166	7E-6	5.154901959985742	(IGP5)	    .14	[0.081-0.208] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q21.2	10	61935289	NR	ARID5B			84159			rs6479779-C	rs6479779	0	6479779	intron	0	0.345369661175423	2E-6	5.698970004336018	(IGP5)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.298923567230632	1E-10	10	(IGP5)	    .22	[0.15-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5p15.1	5	16037993	NR	RNA5SP178 - MARCH11	100873440	441061		        4.64	       29.37	rs1039443-C	rs1039443	0	1039443	Intergenic	1	0.105031482310793	8E-6	5.096910013008055	(IGP50)	    .22	[0.12-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189640669950739	5E-10	9.301029995663981	(IGP50)	    .26	[0.18-0.34] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q25.3	10	116065377	NR	GFRA1			2674			rs2302105-C	rs2302105	0	2302105	intron	0	0.768104532915361	4E-6	5.397940008672037	(IGP50)	    .17	[0.097-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q23.3	12	105065019	NR	ALDH1L2			160428			rs10861342-C	rs10861342	0	10861342	intron	0	0.099068749529359	2E-6	5.698970004336018	(IGP51)	    .25	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q21.32	17	47757912	NR	TBX21 - OSBPL7	30009	114881		       11.79	       49.46	rs11651000-G	rs11651000	0	11651000	Intergenic	1	0.840144331241596	8E-6	5.096910013008055	(IGP51)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.392332365307037	2E-13	12.69897000433602	(IGP51)	    .23	[0.17-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p24.1	2	23369274	NR	RNA5SP87 - KLHL29	100873320	114818		     1030.27	       16.15	rs2577704-G	rs2577704	0	2577704	Intergenic	1	0.900979990049305	5E-6	5.301029995663981	(IGP51)	    .24	[0.14-0.34] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	113009359	NR	C7orf60 - GPR85	154743	54329		       69.48	       71.05	rs6969802-G	rs6969802	0	6969802	Intergenic	1	0.0788437633348274	3E-6	5.522878745280337	(IGP51)	    .27	[0.16-0.38] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q26.1	15	93021742	NR	CHD2			1106			rs7179432-C	rs7179432	0	7179432	intron	0	0.455903207978485	4E-6	5.397940008672037	(IGP51)	    .16	[0.09-0.224] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q21.31	13	62356167	NR	RPL32P28 - LINC00395	100133193	100874157		       27.77	     1311.52	rs9563960-G	rs9563960	0	9563960	Intergenic	1	0.296508162707306	4E-6	5.397940008672037	(IGP51)	    .16	[0.092-0.226] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q13.3	11	69787644	NR	FGF4 - FGF3	2249	2248		       12.24	       22.32	rs10796849-C	rs10796849	0	10796849	Intergenic	1	0.111934	6E-6	5.221848749616356	(IGP52)	    .61	[0.35-0.88] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q24.1	10	95541247	NR	SORBS1			10580			rs11188352-G	rs11188352	0	11188352	intron	0	0.0425983854693141	5E-6	5.301029995663981	(IGP52)	    .43	[0.24-0.61] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12p13.31	12	5642176	NR	ANO2			57101			rs2110166-C	rs2110166	0	2110166	intron	0	0.983043522563177	5E-6	5.301029995663981	(IGP52)	    .57	[0.32-0.81] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q31.1	13	78806681	NR	LINC00331			100874126			rs2184180-G	rs2184180	0	2184180		0	0.362504259025271	5E-6	5.301029995663981	(IGP52)	    .16	[0.093-0.234] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q36.2	7	153881331	NR	DPP6			1804			rs38989-G	rs38989	0	38989	intron	0	0.405296777978339	7E-6	5.154901959985742	(IGP52)	    .15	[0.086-0.219] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p21.3	7	11251773	NR	RPL23AP52 - NPM1P11	100271465	10836		      244.92	        5.60	rs4720952-G	rs4720952	0	4720952	Intergenic	1	0.419614749097473	7E-7	6.154901959985743	(IGP52)	    .15	[0.093-0.214] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p13	20	4406487	NR	ADRA1D - RPL7AP12	146	128668		      157.48	      184.45	rs586446-C	rs586446	0	586446	Intergenic	1	0.118307047833935	5E-6	5.301029995663981	(IGP52)	    .22	[0.13-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p16.1	4	6734638	NR	BLOC1S4 - KIAA0232	55330	9778		       16.98	       48.09	rs7661864-G	rs7661864	0	7661864	Intergenic	1	0.699190685672515	5E-6	5.301029995663981	(IGP52)	    .33	[0.19-0.47] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q24.3	6	147438398	NR	YAP1P1 - SAMD5	442266	389432		       30.12	       70.29	rs9403856-C	rs9403856	0	9403856	Intergenic	1	0.861277425090253	2E-6	5.698970004336018	(IGP52)	    .33	[0.19-0.46] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33153529	NR	B4GALT1			2683			rs10813957-G	rs10813957	0	10813957	intron	0	0.738414638629283	2E-9	8.698970004336019	(IGP53)	    .22	[0.15-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q22.3	11	107476551	NR	SMARCE1P1 - ALKBH8	100271884	91801		       71.91	       26.18	rs11212260-C	rs11212260	0	11212260	Intergenic	1	0.0281428517133956	9E-6	5.045757490560675	(IGP53)	    .44	[0.25-0.64] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836731980863373	7E-11	10.15490195998574	(IGP53)	    .29	[0.2-0.38] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p22.3	1	86585518	NR	CDCA4P2 - CLCA3P	100129348	9629		       31.96	       48.76	rs1953652-C	rs1953652	0	1953652	Intergenic	1	0.653295152202937	4E-6	5.397940008672037	(IGP53)	    .15	[0.086-0.212] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p14.3	7	34657528	NR	NPSR1;NPSR1-AS1			387129;404744			rs2530545-C	rs2530545	0	2530545	nearGene-5;intron	0	0.806018537605697	7E-6	5.154901959985742	(IGP53)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p13.3	9	36099402	RECK	RECK			8434			rs4878639-C	rs4878639	0	4878639	intron	0	0.263725273253227	6E-7	6.221848749616355	(IGP53)	    .18	[0.11-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	114101050	NR	FOXP2			93986			rs6466479-G	rs6466479	0	6466479	intron	0	0.122643248331108	4E-6	5.397940008672037	(IGP53)	    .22	[0.13-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q23.3	12	108483764	NR	CMKLR1 - FICD	1240	11153		      144.45	       31.51	rs918304-C	rs918304	0	918304	Intergenic	1	0.00963820126262628	8E-6	5.096910013008055	(IGP53)	   1.60	[0.9-2.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p22	8	14256307	NR	SGCZ			137868			rs9886428-G	rs9886428	0	9886428	intron	0	0.455051607476636	5E-6	5.301029995663981	(IGP53)	    .14	[0.08-0.201] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q13.1	8	65711997	NR	MTFR1 - PDE7A	9650	5150		        1.43	        2.34	rs10504390-G	rs10504390	0	10504390	Intergenic	1	0.0804795064530485	2E-7	6.698970004336019	(IGP54)	    .29	[0.18-0.4] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p15.3	7	23440848	NR	IGF2BP3			10643			rs11763760-C	rs11763760	0	11763760	intron	0	0.797056939029818	2E-6	5.698970004336018	(IGP54)	    .18	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q22.3	5	115803051	NR	TMED7 - CDO1	51014	1036		      176.87	        1.68	rs13174348-G	rs13174348	0	13174348	Intergenic	1	0.784686077436582	3E-6	5.522878745280337	(IGP54)	    .18	[0.11-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q27.3	3	187014891	NR	ST6GAL1			6480			rs17776120-C	rs17776120	0	17776120	intron	0	0.636448318202047	2E-6	5.698970004336018	(IGP54)	    .17	[0.097-0.234] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q34.3	9	134924613	NR	FCN1 - OLFM1	2219	10439		        6.61	      150.63	rs2094962-C	rs2094962	0	2094962	Intergenic	1	0.901323053404539	5E-6	5.301029995663981	(IGP54)	    .24	[0.14-0.34] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	2E-7	6.698970004336019	(IGP54)	    .22	[0.14-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q22.1	8	93210716	NR	C8orf87 - LINC00535	389676	642924		       43.87	      135.75	rs278541-C	rs278541	0	278541	Intergenic	1	0.97906300623053	4E-8	7.397940008672037	(IGP54)	    .81	[0.52-1.09] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	114101050	NR	FOXP2			93986			rs6466479-G	rs6466479	0	6466479	intron	0	0.122643248331108	7E-6	5.154901959985742	(IGP54)	    .22	[0.12-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q21.1	18	48701073	NR	CTIF			9811			rs16949825-C	rs16949825	0	16949825	intron	0	0.902274750778816	7E-6	5.154901959985742	(IGP55)	    .25	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836731980863373	1E-10	10	(IGP55)	    .29	[0.2-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q12	17	39176710	NR	CACNB1			782			rs626657-C	rs626657	0	626657	intron	0	0.861032878949711	2E-6	5.698970004336018	(IGP55)	    .23	[0.14-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p22	8	14256307	NR	SGCZ			137868			rs9886428-G	rs9886428	0	9886428	intron	0	0.455051607476636	2E-6	5.698970004336018	(IGP55)	    .15	[0.087-0.207] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p23.3	2	27364857	NR	EIF2B4			8890			rs1058065-G	rs1058065	0	1058065	cds-synon	0	0.97552739311682	4E-6	5.397940008672037	(IGP56)	    .54	[0.31-0.77] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p36.33	1	2274142	NR	SKI			6497			rs12045693-C	rs12045693	0	12045693	intron	0	0.573032700580098	3E-6	5.522878745280337	(IGP56)	    .15	[0.089-0.219] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q13.3	8	70632513	NR	LOC286190			286190			rs13272623-G	rs13272623	0	13272623	intron	0	0.155110978134761	4E-6	5.397940008672037	(IGP56)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q21.32	9	81907834	NR	RNA5SP287 - SPATA31D5P	100873540	347127		       22.24	        5.60	rs13295552-C	rs13295552	0	13295552	Intergenic	1	0.029172681294964	5E-6	5.301029995663981	(IGP56)	    .91	[0.52-1.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836660240071397	8E-6	5.096910013008055	(IGP56)	    .20	[0.11-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q25.1	10	109211677	NR	MAPKAPK5P1 - PHB2P1	100533849	645318		      362.12	      316.44	rs17783561-T	rs17783561	0	17783561	Intergenic	1	0.135585937974119	6E-6	5.221848749616356	(IGP56)	    .27	[0.16-0.39] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.21	22	19577734	NR	LINC00895 - SEPT5	150185	5413		       10.90	      136.73	rs2106139-G	rs2106139	0	2106139	Intergenic	1	0.966774019767961	6E-6	5.221848749616356	(IGP56)	    .44	[0.25-0.62] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q35	7	147918548	NR	CNTNAP2			26047			rs2538958-C	rs2538958	0	2538958	intron	0	0.436017399375279	8E-6	5.096910013008055	(IGP56)	    .14	[0.078-0.2] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q12	17	39175092	NR	CACNB1			782			rs523516-T	rs523516	0	523516	UTR-3	0	0.176237627398483	4E-6	5.397940008672037	(IGP56)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.1	1	84403278	NR	DNASE2B			58511			rs604708-C	rs604708	0	604708	intron	0	0.970210567603748	8E-6	5.096910013008055	(IGP56)	    .41	[0.23-0.59] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33153529	NR	B4GALT1			2683			rs10813957-G	rs10813957	0	10813957	intron	0	0.738414638629283	3E-9	8.522878745280337	(IGP57)	    .21	[0.14-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q22.3	11	107476551	NR	SMARCE1P1 - ALKBH8	100271884	91801		       71.91	       26.18	rs11212260-C	rs11212260	0	11212260	Intergenic	1	0.0281428517133956	7E-6	5.154901959985742	(IGP57)	    .45	[0.25-0.65] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q15	12	69187442	NR	CPM - CPSF6	1368	11052		      224.20	       52.10	rs12367448-C	rs12367448	0	12367448	Intergenic	1	0.831671480195817	6E-6	5.221848749616356	(IGP57)	    .25	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q14.3	2	124534260	NR	CNTNAP5			129684			rs13021885-C	rs13021885	0	13021885	intron	0	0.932509117935024	8E-6	5.096910013008055	(IGP57)	    .39	[0.22-0.56] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836731980863373	1E-10	10	(IGP57)	    .29	[0.2-0.37] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p22.3	1	86585518	NR	CDCA4P2 - CLCA3P	100129348	9629		       31.96	       48.76	rs1953652-C	rs1953652	0	1953652	Intergenic	1	0.653295152202937	9E-6	5.045757490560675	(IGP57)	    .14	[0.08-0.206] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p13.3	9	36099402	RECK	RECK			8434			rs4878639-C	rs4878639	0	4878639	intron	0	0.263725273253227	1E-6	5.999999999999999	(IGP57)	    .17	[0.1-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	114101050	NR	FOXP2			93986			rs6466479-G	rs6466479	0	6466479	intron	0	0.122643248331108	2E-6	5.698970004336018	(IGP57)	    .23	[0.13-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p14.1	3	65413223	NR	MAGI1			9223			rs7649739-G	rs7649739	0	7649739	intron	0	0.358836830440587	6E-6	5.221848749616356	(IGP57)	    .15	[0.085-0.215] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p22	8	14256307	NR	SGCZ			137868			rs9886428-G	rs9886428	0	9886428	intron	0	0.455051607476636	2E-6	5.698970004336018	(IGP57)	    .15	[0.087-0.208] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.39336899642538	2E-19	18.69897000433602	(IGP58)	    .29	[0.22-0.35] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q42.12	1	225405225	NR	LBR			3930			rs16844846-G	rs16844846	0	16844846	intron	0	0.0583315441465594	6E-6	5.221848749616356	(IGP58)	    .31	[0.18-0.45] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q14.1	11	80600627	NR	LOC101928964			101928964			rs2140930-G	rs2140930	0	2140930	intron	0	0.348471261394102	5E-6	5.301029995663981	(IGP58)	    .17	[0.095-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31605179	NR	TRNAI25			100189401			rs2844479-C	rs2844479	0	2844479		0	0.393054780607685	7E-6	5.154901959985742	(IGP58)	    .15	[0.083-0.212] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q22.3	18	71712154	NR	GTSCR1 - CBLN2	220158	147381		     1061.30	      824.53	rs2887004-G	rs2887004	0	2887004	Intergenic	1	0.181545600983021	2E-6	5.698970004336018	(IGP58)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32985503	NR	TRNAI25			100189401			rs3097645-C	rs3097645	0	3097645		0	0.873514573726542	3E-6	5.522878745280337	(IGP58)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.636915159517426	3E-8	7.522878745280337	(IGP58)	    .18	[0.11-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q36.1	7	151217985	ABCF2,SMARCD3	ABCF2			10061			rs1122979-G	rs1122979	0	1122979	intron	0	0.874968858612975	7E-6	5.154901959985742	(IGP59)	    .22	[0.12-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p12	8	31176759	NR	WRN - KCTD9P6	7486	642513		        3.00	       43.26	rs11774682-C	rs11774682	0	11774682	Intergenic	1	0.966250893300248	1E-6	5.999999999999999	(IGP59)	    .83	[0.49-1.16] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q24.13	8	124709125	NR	MTSS1			9788			rs11781525-G	rs11781525	0	11781525	intron	0	0.97440182935123	6E-6	5.221848749616356	(IGP59)	    .60	[0.34-0.87] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.393000049217002	1E-22	22	(IGP59)	    .31	[0.25-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q21.32	17	47753582	NR	TBX21 - OSBPL7	30009	114881		        7.46	       53.79	rs12950390-C	rs12950390	0	12950390	Intergenic	1	0.252525314541387	3E-6	5.522878745280337	(IGP59)	    .17	[0.098-0.239] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q24.31	12	122929802	NR	ABCB9			23457			rs2270788-C	rs2270788	0	2270788	intron	0	0.0991554951230425	7E-6	5.154901959985742	(IGP59)	    .24	[0.13-0.34] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32730008	NR	TRNAI25			100189401			rs2859113-C	rs2859113	0	2859113		0	0.378328302013423	6E-8	7.221848749616355	(IGP59)	    .18	[0.12-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32985503	NR	TRNAI25			100189401			rs3097645-C	rs3097645	0	3097645		0	0.87438328769575	7E-6	5.154901959985742	(IGP59)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.636650594183445	1E-9	8.999999999999998	(IGP59)	    .19	[0.13-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q21.32	17	47273752	NR	ITGB3			3690			rs7209700-G	rs7209700	0	7209700	intron	0	0.308782806263982	4E-7	6.397940008672037	(IGP59)	    .17	[0.1-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11p11.2	11	45062980	NR	TP53I11 - PRDM11	9537	56981		      111.61	       31.03	rs7951911-G	rs7951911	0	7951911	Intergenic	1	0.0838039874720358	8E-6	5.096910013008055	(IGP59)	    .27	[0.15-0.39] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q34	13	113804266	NR	TMEM255B			348013			rs9329350-G	rs9329350	0	9329350	intron	0	0.941389270067114	8E-6	5.096910013008055	(IGP59)	    .30	[0.17-0.43] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q21.13	7	89065756	NR	ZNF804B			219578			rs10236237-T	rs10236237	0	10236237	intron	0	0.267901504028648	7E-6	5.154901959985742	(IGP6)	    .16	[0.089-0.228] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.394040135631155	5E-15	14.30102999566398	(IGP6)	    .25	[0.19-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31605179	NR	TRNAI25			100189401			rs2844479-C	rs2844479	0	2844479		0	0.393631380483438	4E-6	5.397940008672037	(IGP6)	    .15	[0.086-0.215] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q22.3	18	71712154	NR	GTSCR1 - CBLN2	220158	147381		     1061.30	      824.53	rs2887004-G	rs2887004	0	2887004	Intergenic	1	0.180826079677708	6E-6	5.221848749616356	(IGP6)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.637609347358997	1E-8	8	(IGP6)	    .18	[0.12-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q21.13	7	89065756	NR	ZNF804B			219578			rs10236237-T	rs10236237	0	10236237	intron	0	0.26751565049416	6E-6	5.221848749616356	(IGP60)	    .16	[0.091-0.229] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.393211372416891	3E-14	13.52287874528034	(IGP60)	    .24	[0.18-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q26	4	116928293	NR	HAVCR1P2 - TRAM1L1	100421002	133022		       69.32	      155.26	rs2389339-G	rs2389339	0	2389339	Intergenic	1	0.790576647349506	3E-6	5.522878745280337	(IGP60)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31605179	NR	TRNAI25			100189401			rs2844479-C	rs2844479	0	2844479		0	0.393698650943396	4E-6	5.397940008672037	(IGP60)	    .15	[0.087-0.215] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.637881567834681	5E-9	8.301029995663981	(IGP60)	    .19	[0.12-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	95905518	NR	ELL2			22936			rs10069748-C	rs10069748	0	10069748	intron	0	0.274419212661614	5E-6	5.301029995663981	(IGP61)	    .15	[0.088-0.22] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q22.3	18	71698064	NR	GTSCR1 - CBLN2	220158	147381		     1047.21	      838.62	rs11665307-C	rs11665307	0	11665307	Intergenic	1	0.173309217119929	3E-7	6.522878745280337	(IGP61)	    .21	[0.13-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.393162371823451	3E-17	16.52287874528034	(IGP61)	    .27	[0.21-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		19p13.2	19	11544195	NR	CNN1			1264			rs11880637-T	rs11880637	0	11880637	intron	0	0.011251	6E-6	5.221848749616356	(IGP61)	   3.94	[2.24-5.64] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q23	18	77926067	NR	BDP1P - LINC01029	724038	101927715		      488.82	       45.23	rs12455580-C	rs12455580	0	12455580	Intergenic	1	0.662638724030317	7E-6	5.154901959985742	(IGP61)	    .16	[0.091-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p12	2	76996812	NR	LRRTM4;LOC101927907			80059;101927907			rs1470506-C	rs1470506	0	1470506	intron;intron	0	0.594972305394561	6E-6	5.221848749616356	(IGP61)	    .14	[0.081-0.204] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.2	9	27075717	NR	LRRC19 - TEK	64922	7010		       70.02	       33.43	rs1577330-G	rs1577330	0	1577330	Intergenic	1	0.245380581810076	4E-6	5.397940008672037	(IGP61)	    .17	[0.1-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q42.12	1	225405225	NR	LBR			3930			rs16844846-G	rs16844846	0	16844846	intron	0	0.0584601113241195	4E-6	5.397940008672037	(IGP61)	    .32	[0.18-0.45] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	31605179	NR	TRNAI25			100189401			rs2844479-C	rs2844479	0	2844479		0	0.393516127507802	9E-6	5.045757490560675	(IGP61)	    .14	[0.081-0.208] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32985503	NR	TRNAI25			100189401			rs3097645-C	rs3097645	0	3097645		0	0.873550828800713	6E-6	5.221848749616356	(IGP61)	    .21	[0.12-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50310671	NR	IKZF1			10320			rs6583437-G	rs6583437	0	6583437	intron	0	0.636609333927775	7E-6	5.154901959985742	(IGP61)	    .14	[0.081-0.205] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q22.31	6	123668596	NR	TRDN - NKAIN2	10345	154215		       31.31	      135.25	rs9490860-C	rs9490860	0	9490860	Intergenic	1	0.231696267498885	4E-6	5.397940008672037	(IGP61)	    .17	[0.098-0.242] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		19p13.2	19	11544195	NR	CNN1			1264			rs11880637-T	rs11880637	0	11880637	intron	0	0.011251	6E-6	5.221848749616356	(IGP62)	   3.87	[2.2-5.54] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189579642030276	1E-12	12	(IGP62)	    .29	[0.21-0.38] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q13.11	3	103731747	NR	MIR548AB - RAP1BP2	100616336	100128179		      207.63	      331.15	rs2677247-C	rs2677247	0	2677247	Intergenic	1	0.602245139804096	9E-6	5.045757490560675	(IGP62)	    .14	[0.079-0.204] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.2	1	68461830	NR	RPE65 - DEPDC1	6121	55635		        8.48	       12.32	rs435066-C	rs435066	0	435066	Intergenic	1	0.195964786286732	4E-6	5.397940008672037	(IGP62)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q11.22	20	33968971	NR	PIGPP3 - RALY	100128033	22913		        3.40	       24.68	rs6059594-G	rs6059594	0	6059594	Intergenic	1	0.962780757212823	3E-6	5.522878745280337	(IGP62)	    .50	[0.29-0.71] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368343116206589	8E-12	11.09691001300806	(IGP62)	    .22	[0.16-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65291924	NR	PTBP1P - MIR4708	122888	100616176		       10.27	       43.19	rs7159888-G	rs7159888	0	7159888	Intergenic	1	0.550559034728406	2E-6	5.698970004336018	(IGP62)	    .15	[0.086-0.207] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299146468388246	2E-10	9.698970004336017	(IGP62)	    .21	[0.15-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q21.32	17	47232327	NR	MYL4 - ITGB3	4635	3690		        8.65	       21.52	rs11079764-G	rs11079764	0	11079764	Intergenic	1	0.51337114610245	5E-6	5.301029995663981	(IGP63)	    .18	[0.1-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p13	3	72460120	NR	RYBP - SHQ1	23429	55164		       13.50	      289.16	rs11128271-C	rs11128271	0	11128271	Intergenic	1	0.936242533184855	6E-6	5.221848749616356	(IGP63)	    .31	[0.17-0.44] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.393668566146993	3E-8	7.522878745280337	(IGP63)	    .17	[0.11-0.24] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q14.3	2	124499159	NR	CNTNAP5			129684			rs11899928-C	rs11899928	0	11899928	intron	0	0.0215184841870824	8E-6	5.096910013008055	(IGP63)	    .69	[0.39-0.99] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		21q22.3	21	42093370	NR	UMODL1			89766			rs1475911-C	rs1475911	0	1475911	intron	0	0.154651563028953	9E-6	5.045757490560675	(IGP63)	    .20	[0.11-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p23.1	8	12834362	NR	LINC00681 - KIAA1456	101409254	57604		       16.07	      111.31	rs17120471-C	rs17120471	0	17120471	Intergenic	1	0.101965395991091	6E-6	5.221848749616356	(IGP63)	    .24	[0.13-0.34] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189663332739421	4E-9	8.397940008672036	(IGP63)	    .24	[0.16-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q24.1	16	86647390	NR	FOXL1 - RPL39P30	2300	100271519		       65.69	      620.74	rs300032-G	rs300032	0	300032	Intergenic	1	0.146304785746102	9E-8	7.045757490560674	(IGP63)	    .24	[0.15-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.2	1	68461830	NR	RPE65 - DEPDC1	6121	55635		        8.48	       12.32	rs435066-C	rs435066	0	435066	Intergenic	1	0.195829321603564	7E-6	5.154901959985742	(IGP63)	    .18	[0.1-0.253] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39439582	NR	TAB1 - MGAT3	10454	4248		        2.46	        7.64	rs4821897-G	rs4821897	0	4821897	Intergenic	1	0.707128727839644	3E-12	11.52287874528034	(IGP63)	    .24	[0.17-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368316756347439	2E-13	12.69897000433602	(IGP63)	    .24	[0.17-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q34.2	9	133810892	NR	VAV2			7410			rs7021663-C	rs7021663	0	7021663	intron	0	0.209934371046771	3E-6	5.522878745280337	(IGP63)	    .18	[0.1-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q42.3	1	234590610	NR	TARBP1 - IRF2BP2	6894	359948		      111.49	       13.66	rs11581667-C	rs11581667	0	11581667	Intergenic	1	0.745277716510903	4E-6	5.397940008672037	(IGP64)	    .20	[0.11-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13319976	NR	SEPHS1			22929			rs1747683-G	rs1747683	0	1747683	intron	0	0.414548764129951	3E-7	6.522878745280337	(IGP64)	    .16	[0.1-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	2E-14	13.69897000433602	(IGP64)	    .32	[0.24-0.4] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	53256409	NR	RPL13AP13 - RPS19P4	402214	100132049		       49.23	      157.07	rs27323-G	rs27323	0	27323	Intergenic	1	0.421661209612817	9E-6	5.045757490560675	(IGP64)	    .14	[0.078-0.202] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.33	22	50463961	NR	SBF1			6305			rs5771040-G	rs5771040	0	5771040	intron	0	0.660043690698709	2E-6	5.698970004336018	(IGP64)	    .16	[0.093-0.226] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368179075211393	2E-7	6.698970004336019	(IGP64)	    .17	[0.11-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299013119715176	3E-8	7.522878745280337	(IGP64)	    .19	[0.12-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.393717723953695	1E-10	10	(IGP65)	    .20	[0.14-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		19p13.2	19	11544195	NR	CNN1			1264			rs11880637-T	rs11880637	0	11880637	intron	0	0.011251	6E-6	5.221848749616356	(IGP65)	   3.92	[2.22-5.62] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		18q23	18	77926067	NR	BDP1P - LINC01029	724038	101927715		      488.82	       45.23	rs12455580-C	rs12455580	0	12455580	Intergenic	1	0.662723558771149	2E-6	5.698970004336018	(IGP65)	    .17	[0.1-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p12	2	76996812	NR	LRRTM4;LOC101927907			80059;101927907			rs1470506-C	rs1470506	0	1470506	intron;intron	0	0.595063458147818	4E-7	6.397940008672037	(IGP65)	    .16	[0.098-0.222] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p16.1	4	7016458	NR	TBC1D14			57533			rs16839553-G	rs16839553	0	16839553	intron	0	0.992978201291118	8E-6	5.096910013008055	(IGP65)	   1.14	[0.64-1.64] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q15	6	88543930	NR	ACTBP8 - RNGTT	68	8732		      266.86	       65.97	rs2610739-G	rs2610739	0	2610739	Intergenic	1	0.187486864203028	4E-6	5.397940008672037	(IGP65)	    .19	[0.11-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30711851	NR	MDC1			9656			rs3094093-T	rs3094093	0	3094093	intron	0	0.107712365538735	8E-6	5.096910013008055	(IGP65)	    .22	[0.12-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32985503	NR	TRNAI25			100189401			rs3097645-C	rs3097645	0	3097645		0	0.872971129118433	6E-7	6.221848749616355	(IGP65)	    .23	[0.14-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q15	5	95911056	NR	ELL2			22936			rs3777193-G	rs3777193	0	3777193	intron	0	0.71211365048976	4E-6	5.397940008672037	(IGP65)	    .16	[0.092-0.227] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q22.1	2	140984021	NR	LRP1B			53353			rs4954683-C	rs4954683	0	4954683	intron	0	0.172162723953695	9E-6	5.045757490560675	(IGP65)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368121119768477	5E-7	6.30102999566398	(IGP65)	    .16	[0.099-0.224] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17p12	17	13805544	NR	MIR548H3 - CDRT15P1	100302287	94158		      261.90	      218.95	rs7215286-C	rs7215286	0	7215286	Intergenic	1	0.961960845948353	3E-6	5.522878745280337	(IGP65)	    .40	[0.23-0.57] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q23.3	2	152580056	NR	FMNL2			114793			rs11675841-C	rs11675841	0	11675841	intron	0	0.607345676902537	6E-6	5.221848749616356	(IGP66)	    .14	[0.082-0.208] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13319976	NR	SEPHS1			22929			rs1747683-G	rs1747683	0	1747683	intron	0	0.414548764129951	2E-7	6.698970004336019	(IGP66)	    .17	[0.1-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	NR	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	9E-17	16.04575749056067	(IGP66)	    .35	[0.27-0.43] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17848636	NR	BANF2 - SNX5	140836	27131		      112.76	       92.96	rs2745851-G	rs2745851	0	2745851	Intergenic	1	0.639172889630619	2E-6	5.698970004336018	(IGP66)	    .15	[0.089-0.216] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50295636	NR	C7orf72 - IKZF1	100130988	10320		      136.38	        9.15	rs4917017-G	rs4917017	0	4917017	Intergenic	1	0.70576580729862	2E-7	6.698970004336019	(IGP66)	    .18	[0.11-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q11.22	20	33968971	NR	PIGPP3 - RALY	100128033	22913		        3.40	       24.68	rs6059594-G	rs6059594	0	6059594	Intergenic	1	0.962797338540276	9E-6	5.045757490560675	(IGP66)	    .48	[0.27-0.69] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299013119715176	1E-16	16	(IGP66)	    .28	[0.21-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p13	3	72468889	NR	RYBP - SHQ1	23429	55164		       22.27	      280.39	rs9832314-G	rs9832314	0	9832314	Intergenic	1	0.055934898976413	9E-6	5.045757490560675	(IGP66)	    .30	[0.17-0.43] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	58786896	NR	RAB3C			115827			rs10065350-C	rs10065350	0	10065350	intron	0	0.841900657231865	9E-6	5.045757490560675	(IGP67)	    .20	[0.11-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p36.11	1	25076133	NR	MIR4425 - SYF2	100616365	25949		       52.55	      146.14	rs10903027-C	rs10903027	0	10903027	Intergenic	1	0.707795287049399	5E-6	5.301029995663981	(IGP67)	    .16	[0.091-0.228] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p13	3	72460120	NR	RYBP - SHQ1	23429	55164		       13.50	      289.16	rs11128271-C	rs11128271	0	11128271	Intergenic	1	0.93627697952826	6E-7	6.221848749616355	(IGP67)	    .34	[0.21-0.47] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q14.3	2	124499159	NR	CNTNAP5			129684			rs11899928-C	rs11899928	0	11899928	intron	0	0.0215231680017802	3E-6	5.522878745280337	(IGP67)	    .72	[0.42-1.02] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q27	6	167341487	NR	TTLL2			83887			rs12528714-G	rs12528714	0	12528714	missense	0	0.991049	8E-6	5.096910013008055	(IGP67)	   2.43	[1.36-3.49] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.32	6	32948074	NR	TRNAI25			100189401			rs16871226-G	rs16871226	0	16871226		0	0.0244821228239845	2E-6	5.698970004336018	(IGP67)	    .52	[0.3-0.73] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	1E-12	12	(IGP67)	    .29	[0.21-0.38] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q24.1	16	86647390	NR	FOXL1 - RPL39P30	2300	100271519		       65.69	      620.74	rs300032-G	rs300032	0	300032	Intergenic	1	0.146183376056965	3E-7	6.522878745280337	(IGP67)	    .23	[0.14-0.32] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39439582	NR	TAB1 - MGAT3	10454	4248		        2.46	        7.64	rs4821897-G	rs4821897	0	4821897	Intergenic	1	0.707166482866044	4E-18	17.39794000867204	(IGP67)	    .30	[0.23-0.36] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q24.2	14	70153925	NR	SLC8A3			6547			rs4899329-C	rs4899329	0	4899329	intron	0	0.399541382287494	5E-6	5.301029995663981	(IGP67)	    .14	[0.081-0.203] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368179075211393	7E-11	10.15490195998574	(IGP67)	    .21	[0.15-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12p13.31	12	9394366	NR	LOC101930452			101930452			rs7397814-C	rs7397814	0	7397814	intron	0	0.791488588340009	4E-6	5.397940008672037	(IGP67)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q34.2	9	133813958	NR	VAV2			7410			rs756777-G	rs756777	0	756777	intron	0	0.208834557187361	1E-6	5.999999999999999	(IGP67)	    .19	[0.11-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q13.1	8	65711997	NR	MTFR1 - PDE7A	9650	5150		        1.43	        2.34	rs10504390-G	rs10504390	0	10504390	Intergenic	1	0.0802926317898486	8E-6	5.096910013008055	(IGP68)	    .25	[0.14-0.36] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q25	4	109976429	NR	EGF			1950			rs11568995-G	rs11568995	0	11568995	intron	0	0.9883953	1E-6	5.999999999999999	(IGP68)	   1.72	[1.02-2.41] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q23.3	2	152580056	NR	FMNL2			114793			rs11675841-C	rs11675841	0	11675841	intron	0	0.607171814781834	8E-6	5.096910013008055	(IGP68)	    .14	[0.08-0.206] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q24.1	6	139818678	NR	LOC100132735			100132735			rs12664111-G	rs12664111	0	12664111	intron	0	0.0919615409617097	6E-6	5.221848749616356	(IGP68)	    .24	[0.14-0.35] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q31.2	1	191970658	NR	HNRNPA1P46 - RGS18	100421399	64407		      823.64	      187.80	rs17403780-T	rs17403780	0	17403780	Intergenic	1	0.910564153517364	7E-6	5.154901959985742	(IGP68)	    .31	[0.18-0.45] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13319976	NR	SEPHS1			22929			rs1747683-G	rs1747683	0	1747683	intron	0	0.414510834817453	1E-7	7	(IGP68)	    .17	[0.11-0.23] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189580990204809	8E-15	14.09691001300805	(IGP68)	    .32	[0.24-0.41] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p14	4	37649533	NR	RELL1			768211			rs2292298-G	rs2292298	0	2292298	intron	0	0.360936488423865	4E-6	5.397940008672037	(IGP68)	    .15	[0.086-0.215] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17848636	NR	BANF2 - SNX5	140836	27131		      112.76	       92.96	rs2745851-G	rs2745851	0	2745851	Intergenic	1	0.639234834372217	6E-7	6.221848749616355	(IGP68)	    .16	[0.098-0.225] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q35.1	4	182379461	NR	TENM3			55714			rs4862046-G	rs4862046	0	4862046	intron	0	0.907650657658059	9E-6	5.045757490560675	(IGP68)	    .25	[0.14-0.36] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.298923976402493	6E-10	9.221848749616356	(IGP68)	    .21	[0.14-0.28] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p36.11	1	24970252	NR	MIR6731 - MIR4425	102465437	100616365		       50.84	       53.25	rs10751776-C	rs10751776	0	10751776	Intergenic	1	0.54112898484173	7E-6	5.154901959985742	(IGP69)	    .15	[0.084-0.213] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33128023	NR	B4GALT1			2683			rs10813951-G	rs10813951	0	10813951	intron	0	0.262989649130629	7E-8	7.154901959985742	(IGP69)	    .19	[0.12-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q32	9	112925455	NR	SLC46A2 - MUPP	57864	100129193		       34.54	       33.68	rs10817408-C	rs10817408	0	10817408	Intergenic	1	0.149316170753455	6E-6	5.221848749616356	(IGP69)	    .23	[0.13-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8p21.1	8	28324238	NR	PNOC			5368			rs11779594-C	rs11779594	0	11779594	intron	0	0.930937853767276	9E-6	5.045757490560675	(IGP69)	    .27	[0.15-0.38] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836804684351315	2E-6	5.698970004336018	(IGP69)	    .21	[0.12-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	107951753	LAMB1	LAMB1			3912			rs2072209-G	rs2072209	0	2072209	intron	0	0.0582759206419973	1E-8	8	(IGP69)	    .37	[0.25-0.5] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189823636647347	2E-8	7.698970004336018	(IGP69)	    .23	[0.15-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q21.3	3	128939649	NR	LOC100132731			100132731			rs2933343-G	rs2933343	0	2933343	intron	0	0.759492835488185	8E-6	5.096910013008055	(IGP69)	    .16	[0.091-0.232] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p21	2	46323630	NR	EPAS1			2034			rs7582701-C	rs7582701	0	7582701	intron	0	0.0373370440481498	1E-6	5.999999999999999	(IGP69)	    .45	[0.27-0.64] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299323467231387	9E-6	5.045757490560675	(IGP69)	    .15	[0.084-0.218] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30698892	NR	TRNAI25			100189401			rs9468811-C	rs9468811	0	9468811		0	0.937418950958538	3E-6	5.522878745280337	(IGP69)	    .32	[0.19-0.46] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q33.1	9	117796733	NR	TLR4 - TPT1P9	7099	389787		       79.24	      285.96	rs10115586-C	rs10115586	0	10115586	Intergenic	1	0.70273622340899	5E-7	6.30102999566398	(IGP7)	    .17	[0.1-0.23] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p12.3	3	76676752	NR	ROBO2			6092			rs10511052-G	rs10511052	0	10511052	intron	0	0.950688225100133	6E-6	5.221848749616356	(IGP7)	    .36	[0.2-0.52] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p36.33	1	1143818	NR	LOC254099			254099			rs11260603-C	rs11260603	0	11260603	ncRNA	0	0.217058243435692	4E-7	6.397940008672037	(IGP7)	    .26	[0.16-0.36] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		8q13.3	8	70632513	NR	LOC286190			286190			rs13272623-G	rs13272623	0	13272623	intron	0	0.154915348909657	2E-6	5.698970004336018	(IGP7)	    .22	[0.13-0.3] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q15	6	89948064	BACH2	BACH2			60468			rs404256-C	rs404256	0	404256	intron	0	0.559129675122385	7E-9	8.154901959985743	(IGP7)	    .21	[0.14-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q12	20	42365454	NR	PTPRT			11122			rs6030171-C	rs6030171	0	6030171	intron	0	0.359936573653761	3E-6	5.522878745280337	(IGP7)	    .15	[0.086-0.21] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q23.3	2	152580056	NR	FMNL2			114793			rs11675841-C	rs11675841	0	11675841	intron	0	0.607345676902537	5E-6	5.301029995663981	(IGP70)	    .15	[0.083-0.208] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13319976	NR	SEPHS1			22929			rs1747683-G	rs1747683	0	1747683	intron	0	0.414548764129951	6E-7	6.221848749616355	(IGP70)	    .16	[0.096-0.22] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	1E-16	16	(IGP70)	    .35	[0.26-0.43] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17848636	NR	BANF2 - SNX5	140836	27131		      112.76	       92.96	rs2745851-G	rs2745851	0	2745851	Intergenic	1	0.639172889630619	9E-6	5.045757490560675	(IGP70)	    .14	[0.08-0.207] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16p13.11	16	16162910	NR	ABCC6			368			rs3213473-G	rs3213473	0	3213473	intron	0	0.851097327102804	7E-6	5.154901959985742	(IGP70)	    .20	[0.11-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.2	1	68461830	NR	RPE65 - DEPDC1	6121	55635		        8.48	       12.32	rs435066-C	rs435066	0	435066	Intergenic	1	0.196103507788162	5E-6	5.301029995663981	(IGP70)	    .18	[0.1-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50295636	NR	C7orf72 - IKZF1	100130988	10320		      136.38	        9.15	rs4917017-G	rs4917017	0	4917017	Intergenic	1	0.70576580729862	1E-8	8	(IGP70)	    .20	[0.13-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q11.22	20	33968971	NR	PIGPP3 - RALY	100128033	22913		        3.40	       24.68	rs6059594-G	rs6059594	0	6059594	Intergenic	1	0.962797338540276	5E-6	5.301029995663981	(IGP70)	    .49	[0.28-0.7] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	NR	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299013119715176	4E-16	15.39794000867204	(IGP70)	    .28	[0.21-0.34] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q23.3	2	152580056	NR	FMNL2			114793			rs11675841-C	rs11675841	0	11675841	intron	0	0.607345676902537	6E-6	5.221848749616356	(IGP71)	    .14	[0.082-0.208] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13319976	NR	SEPHS1			22929			rs1747683-G	rs1747683	0	1747683	intron	0	0.414548764129951	4E-7	6.397940008672037	(IGP71)	    .16	[0.099-0.224] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	9E-17	16.04575749056067	(IGP71)	    .35	[0.27-0.43] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17848636	NR	BANF2 - SNX5	140836	27131		      112.76	       92.96	rs2745851-G	rs2745851	0	2745851	Intergenic	1	0.639172889630619	9E-6	5.045757490560675	(IGP71)	    .14	[0.08-0.207] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.2	1	68461830	NR	RPE65 - DEPDC1	6121	55635		        8.48	       12.32	rs435066-C	rs435066	0	435066	Intergenic	1	0.196103507788162	7E-6	5.154901959985742	(IGP71)	    .18	[0.1-0.255] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q11.22	20	33968971	NR	PIGPP3 - RALY	100128033	22913		        3.40	       24.68	rs6059594-G	rs6059594	0	6059594	Intergenic	1	0.962797338540276	4E-6	5.397940008672037	(IGP71)	    .50	[0.29-0.71] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368179075211393	1E-8	8	(IGP71)	    .18	[0.12-0.25] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299013119715176	6E-16	15.22184874961635	(IGP71)	    .27	[0.21-0.34] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13319976	NR	SEPHS1			22929			rs1747683-G	rs1747683	0	1747683	intron	0	0.414510834817453	4E-7	6.397940008672037	(IGP72)	    .16	[0.099-0.224] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189358691006233	9E-17	16.04575749056067	(IGP72)	    .35	[0.27-0.43] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5p13.2	5	36473135	NR	RANBP3L - RNA5SP181	202151	100873443		      171.23	       12.21	rs2937550-C	rs2937550	0	2937550	Intergenic	1	0.537253260908281	9E-6	5.045757490560675	(IGP72)	    .18	[0.1-0.26] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.2	1	68461830	NR	RPE65 - DEPDC1	6121	55635		        8.48	       12.32	rs435066-C	rs435066	0	435066	Intergenic	1	0.195968165182547	8E-6	5.096910013008055	(IGP72)	    .18	[0.099-0.254] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20q11.22	20	33968971	NR	PIGPP3 - RALY	100128033	22913		        3.40	       24.68	rs6059594-G	rs6059594	0	6059594	Intergenic	1	0.962818623864648	7E-6	5.154901959985742	(IGP72)	    .48	[0.27-0.69] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p12.2	7	50315611	IKZF1	IKZF1			10320			rs6421315-C	rs6421315	0	6421315	intron	0	0.368120581032947	8E-9	8.096910013008056	(IGP72)	    .19	[0.12-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299146275601069	2E-15	14.69897000433602	(IGP72)	    .27	[0.2-0.34] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q12	4	57073697	NR	IGFBP7			3490			rs10049992-G	rs10049992	0	10049992	intron	0	0.201848923285199	8E-6	5.096910013008055	(IGP73)	    .20	[0.11-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		11q13.3	11	69787644	NR	FGF4 - FGF3	2249	2248		       12.24	       22.32	rs10796849-C	rs10796849	0	10796849	Intergenic	1	0.111934	6E-6	5.221848749616356	(IGP73)	    .61	[0.35-0.88] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10q24.1	10	95541247	NR	SORBS1			10580			rs11188352-G	rs11188352	0	11188352	intron	0	0.0425983446750903	3E-6	5.522878745280337	(IGP73)	    .44	[0.25-0.62] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12p13.31	12	5642176	NR	ANO2			57101			rs2110166-C	rs2110166	0	2110166	intron	0	0.983043627256318	6E-6	5.221848749616356	(IGP73)	    .56	[0.32-0.81] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p21.3	7	11251773	NR	RPL23AP52 - NPM1P11	100271465	10836		      244.92	        5.60	rs4720952-G	rs4720952	0	4720952	Intergenic	1	0.419614954873646	4E-7	6.397940008672037	(IGP73)	    .16	[0.096-0.217] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q14.1	12	62492343	NR	MON2			23041			rs7301016-G	rs7301016	0	7301016	intron	0	0.206214031137184	8E-6	5.096910013008055	(IGP73)	    .17	[0.095-0.243] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q24.3	6	147438398	NR	YAP1P1 - SAMD5	442266	389432		       30.12	       70.29	rs9403856-C	rs9403856	0	9403856	Intergenic	1	0.861471281137184	7E-7	6.154901959985743	(IGP73)	    .34	[0.21-0.48] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33122647	NR	B4GALT1			2683			rs10113903-C	rs10113903	0	10113903	intron	0	0.308537513851653	7E-6	5.154901959985742	(IGP74)	    .15	[0.086-0.22] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q24.1	15	73457267	NR	C15orf60			283677			rs11635553-G	rs11635553	0	11635553	intron	0	0.992804206752874	4E-6	5.397940008672037	(IGP74)	   1.08	[0.62-1.54] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q23	3	139197551	NR	BPESC1 - PISRT1	60467	140464		       72.38	       35.44	rs11706018-C	rs11706018	0	11706018	Intergenic	1	0.934284044682752	9E-6	5.045757490560675	(IGP74)	    .28	[0.15-0.4] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q32.1	1	205514467	NR	CDK18			5129			rs12127944-C	rs12127944	0	12127944	intron	0	0.911099744252874	6E-6	5.221848749616356	(IGP74)	    .31	[0.18-0.45] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q12.1	16	49618868	NR	ZNF423			23090			rs16944158-G	rs16944158	0	16944158	intron	0	0.271065156389634	4E-6	5.397940008672037	(IGP74)	    .16	[0.093-0.231] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836669484361037	2E-6	5.698970004336018	(IGP74)	    .21	[0.13-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	107951753	LAMB1	LAMB1			3912			rs2072209-G	rs2072209	0	2072209	intron	0	0.0584063163538874	2E-6	5.698970004336018	(IGP74)	    .31	[0.18-0.44] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q28.1	4	127545545	NR	RBM48P1 - INTU	132817	27152		      980.77	       87.39	rs2090104-G	rs2090104	0	2090104	Intergenic	1	0.335522302949062	5E-6	5.301029995663981	(IGP74)	    .15	[0.087-0.219] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.190211496872207	2E-8	7.698970004336018	(IGP74)	    .24	[0.15-0.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q12.1	5	61729255	NR	HSPD1P22 - KIF2A	100462984	3796		       65.96	      576.91	rs4699982-T	rs4699982	0	4699982	Intergenic	1	0.158658866845398	9E-6	5.045757490560675	(IGP74)	    .19	[0.11-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p24.3	3	22129805	NR	ZNF385D			79750			rs6797769-T	rs6797769	0	6797769	intron	0	0.548041472743521	3E-6	5.522878745280337	(IGP74)	    .17	[0.097-0.235] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p21	2	46323630	NR	EPAS1			2034			rs7582701-C	rs7582701	0	7582701	intron	0	0.037394344593387	4E-6	5.397940008672037	(IGP74)	    .43	[0.25-0.62] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30698892	NR	TRNAI25			100189401			rs9468811-C	rs9468811	0	9468811		0	0.937725588025022	3E-6	5.522878745280337	(IGP74)	    .33	[0.19-0.46] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33128023	NR	B4GALT1			2683			rs10813951-G	rs10813951	0	10813951	intron	0	0.262766006241641	4E-7	6.397940008672037	(IGP75)	    .18	[0.11-0.25] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9q32	9	112925455	NR	SLC46A2 - MUPP	57864	100129193		       34.54	       33.68	rs10817408-C	rs10817408	0	10817408	Intergenic	1	0.149506685242978	6E-6	5.221848749616356	(IGP75)	    .23	[0.13-0.33] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q24.1	15	73457267	NR	C15orf60			283677			rs11635553-G	rs11635553	0	11635553	intron	0	0.992814619440459	6E-6	5.221848749616356	(IGP75)	   1.06	[0.6-1.52] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q23	3	139197551	NR	BPESC1 - PISRT1	60467	140464		       72.38	       35.44	rs11706018-C	rs11706018	0	11706018	Intergenic	1	0.934430632634864	7E-6	5.154901959985742	(IGP75)	    .28	[0.16-0.4] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1q32.1	1	205514467	NR	CDK18			5129			rs12127944-C	rs12127944	0	12127944	intron	0	0.911226779053085	4E-6	5.397940008672037	(IGP75)	    .32	[0.18-0.45] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q11.2	5	56027067	IL6ST,ANKRD55	FLJ31104 - ANKRD55	441072	79722		       23.42	       72.61	rs17348299-C	rs17348299	0	17348299	Intergenic	1	0.836657880517164	4E-6	5.397940008672037	(IGP75)	    .21	[0.12-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	107951753	LAMB1	LAMB1			3912			rs2072209-G	rs2072209	0	2072209	intron	0	0.0582759937583593	2E-7	6.698970004336019	(IGP75)	    .34	[0.21-0.47] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q12.1	16	49609655	NR	ZNF423			23090			rs2080501-G	rs2080501	0	2080501	intron	0	0.532295847079804	4E-6	5.397940008672037	(IGP75)	    .14	[0.082-0.203] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189826451627285	4E-9	8.397940008672036	(IGP75)	    .25	[0.16-0.33] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	38782370	NR	DNAL4			10126			rs738144-G	rs738144	0	738144	intron	0	0.204838376727597	7E-6	5.154901959985742	(IGP75)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p21	2	46323630	NR	EPAS1			2034			rs7582701-C	rs7582701	0	7582701	intron	0	0.0373185578689255	2E-6	5.698970004336018	(IGP75)	    .45	[0.27-0.63] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q12	14	24139938	NR	EMC9			51016			rs8010715-C	rs8010715	0	8010715	intron	0	0.262775408381632	9E-6	5.045757490560675	(IGP75)	    .17	[0.093-0.24] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30698892	NR	TRNAI25			100189401			rs9468811-C	rs9468811	0	9468811		0	0.937641317877842	2E-6	5.698970004336018	(IGP75)	    .33	[0.19-0.47] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		9p21.1	9	33128023	NR	B4GALT1			2683			rs10813951-G	rs10813951	0	10813951	intron	0	0.262743396083667	3E-6	5.522878745280337	(IGP76)	    .17	[0.097-0.237] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		15q24.1	15	73457267	NR	C15orf60			283677			rs11635553-G	rs11635553	0	11635553	intron	0	0.99282491474212	9E-6	5.045757490560675	(IGP76)	   1.04	[0.58-1.49] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7q31.1	7	107951753	LAMB1	LAMB1			3912			rs2072209-G	rs2072209	0	2072209	intron	0	0.0581724966622163	8E-6	5.096910013008055	(IGP76)	    .29	[0.16-0.42] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q12.1	16	49609655	NR	ZNF423			23090			rs2080501-G	rs2080501	0	2080501	intron	0	0.532905723186471	5E-6	5.301029995663981	(IGP76)	    .14	[0.081-0.201] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189496820649755	2E-8	7.698970004336018	(IGP76)	    .23	[0.15-0.31] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p12	2	77019205	NR	LRRTM4			80059			rs6547115-G	rs6547115	0	6547115	intron	0	0.391438525144637	8E-6	5.096910013008055	(IGP76)	    .14	[0.08-0.206] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q21.31	12	82068447	NR	VN1R57P - CCDC59	100312809	29080		      199.35	      283.86	rs7137515-G	rs7137515	0	7137515	Intergenic	1	0.260927853582555	6E-6	5.221848749616356	(IGP76)	    .16	[0.093-0.235] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p21	2	46323630	NR	EPAS1			2034			rs7582701-C	rs7582701	0	7582701	intron	0	0.0372783807743658	4E-6	5.397940008672037	(IGP76)	    .43	[0.25-0.61] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6p21.33	6	30698892	NR	TRNAI25			100189401			rs9468811-C	rs9468811	0	9468811		0	0.937308425901202	5E-7	6.30102999566398	(IGP76)	    .35	[0.21-0.48] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2q35	2	219999933	NR	MIR4268 - EPHA4	100422959	2043		       93.37	     1418.09	rs10198756-C	rs10198756	0	10198756	Intergenic	1	0.139068532490975	3E-6	5.522878745280337	(IGP77)	    .21	[0.12-0.29] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		14q23.3	14	65308977	FUT8	PTBP1P - MIR4708	122888	100616176		       27.32	       26.14	rs11847263-G	rs11847263	0	11847263	Intergenic	1	0.394003751805054	6E-6	5.221848749616356	(IGP77)	    .14	[0.081-0.204] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p21.1	7	20845476	NR	RPS26P30 - ASS1P11	100271111	340274		        1.51	      374.50	rs13245023-C	rs13245023	0	13245023	Intergenic	1	0.964100804151624	9E-6	5.045757490560675	(IGP77)	    .42	[0.24-0.61] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q34.2	4	175727181	NR	GPM6A			2823			rs9284954-C	rs9284954	0	9284954	intron	0	0.444965493231047	5E-6	5.301029995663981	(IGP77)	    .14	[0.081-0.203] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q25.1	3	150369221	NR	LINC01214 - TSC22D2	101928022	9819		       45.47	       39.09	rs1012583-G	rs1012583	0	1012583	Intergenic	1	0.702573039608367	4E-6	5.397940008672037	(IGP8)	    .16	[0.089-0.221] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p14.1	3	64188225	NR	PRICKLE2;PRICKLE2-AS3			166336;100874243			rs1035275-C	rs1035275	0	1035275	intron;intron	0	0.444727228304406	9E-6	5.045757490560675	(IGP8)	    .14	[0.079-0.204] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q25.3	6	156336708	NR	MIR1202 - TRNAV37P	100302259	100189513		      389.83	      211.20	rs12213468-G	rs12213468	0	12213468	Intergenic	1	0.655773469069871	7E-6	5.154901959985742	(IGP8)	    .15	[0.082-0.209] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q25	4	110306660	NR	ZBED1P1 - RPL7L1P13	645145	100133103		       13.00	       93.10	rs13148252-G	rs13148252	0	13148252	Intergenic	1	0.745779246105919	6E-6	5.221848749616356	(IGP8)	    .17	[0.097-0.245] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.2	22	43228759	NR	SCUBE1			80274			rs139014-C	rs139014	0	139014	intron	0	0.167018170449488	5E-6	5.301029995663981	(IGP8)	    .20	[0.11-0.28] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3q25.1	3	150979421	NR	CLRN1-AS1			116933			rs16863118-C	rs16863118	0	16863118	intron	0	0.836539205162439	8E-6	5.096910013008055	(IGP8)	    .18	[0.1-0.26] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		16q23.3	16	81927353	NR	PLCG2			5336			rs3813009-C	rs3813009	0	3813009	intron	0	0.223729928793947	4E-7	6.397940008672037	(IGP8)	    .21	[0.13-0.29] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		1p31.1	1	78521617	NR	PTGFR			5737			rs672561-C	rs672561	0	672561	intron	0	0.257740490431687	9E-6	5.045757490560675	(IGP8)	    .17	[0.094-0.242] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		3p24.3	3	20916318	NR	RNY4P22 - VENTXP7	100873800	391518		      723.44	      489.41	rs6787231-C	rs6787231	0	6787231	Intergenic	1	0.900662045838896	5E-6	5.301029995663981	(IGP8)	    .26	[0.15-0.37] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12p11.22	12	28040056	NR	PTHLH - CCDC91	5744	55297		       68.07	      150.37	rs7964407-G	rs7964407	0	7964407	Intergenic	1	0.620613410769915	6E-6	5.221848749616356	(IGP8)	    .21	[0.12-0.3] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		12q23.3	12	103640541	NR	STAB2			55576			rs1650123-C	rs1650123	0	1650123	intron	0	0.577816124610592	6E-6	5.221848749616356	(IGP8)	    .15	[0.086-0.218] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		6q23.1	6	130565292	NR	TMEM200A - SMLR1	114801	100507203		      121.87	      262.11	rs9492645-G	rs9492645	0	9492645	Intergenic	1	0.947434826924789	5E-6	5.301029995663981	(IGP8)	    .34	[0.19-0.48] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p25.1	2	9119469	NR	RPL30P3 - ASAP2	100270977	8853		       37.67	       87.30	rs9636252-C	rs9636252	0	9636252	Intergenic	1	0.641289432131731	3E-6	5.522878745280337	(IGP8)	    .15	[0.087-0.215] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		10p13	10	13321046	NR	SEPHS1			22929			rs10508459-T	rs10508459	0	10508459	intron	0	0.47438586013363	2E-6	5.698970004336018	(IGP9)	    .14	[0.085-0.204] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4q25	4	109976429	NR	EGF			1950			rs11568995-G	rs11568995	0	11568995	intron	0	0.9884981	5E-6	5.301029995663981	(IGP9)	   1.62	[0.93-2.32] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		5q33.3	5	157983270	NR	RPLP2P2 - MARK2P11	644198	100421484		       51.65	        1.37	rs11958404-T	rs11958404	0	11958404	Intergenic	1	0.113988281514477	1E-6	5.999999999999999	(IGP9)	    .25	[0.15-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		4p14	4	37645612	NR	RELL1			768211			rs13144232-G	rs13144232	0	13144232	intron	0	0.63805114610245	6E-7	6.221848749616355	(IGP9)	    .16	[0.1-0.228] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q11.23	22	23828809	SMARCB1,DERL3	SMARCB1			6598			rs2186369-G	rs2186369	0	2186369	intron	0	0.189660889532294	3E-13	12.52287874528034	(IGP9)	    .30	[0.22-0.39] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		7p21.1	7	16797830	NR	AGR2			10551			rs2280655-C	rs2280655	0	2280655	intron	0	0.977065699331849	4E-6	5.397940008672037	(IGP9)	    .63	[0.36-0.9] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		20p12.1	20	17848636	NR	BANF2 - SNX5	140836	27131		      112.76	       92.96	rs2745851-G	rs2745851	0	2745851	Intergenic	1	0.639296878396437	9E-7	6.045757490560675	(IGP9)	    .16	[0.096-0.223] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		2p11.2	2	88089019	NR	SMYD1			150572			rs2919856-T	rs2919856	0	2919856	intron	0	0.545002280178174	2E-6	5.698970004336018	(IGP9)	    .15	[0.087-0.208] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.31	22	44165407	NR	PARVB			29780			rs5764106-C	rs5764106	0	5764106	intron	0	0.229970760801782	5E-6	5.301029995663981	(IGP9)	    .19	[0.11-0.27] unit decrease	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		17q21.32	17	49213433	NR	ABI3			51225			rs627386-G	rs627386	0	627386	intron	0	0.974019461024499	4E-6	5.397940008672037	(IGP9)	    .55	[0.32-0.78] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		13q14.3	13	51150528	NR	LINC00371	647166	341674	647166	       37.30	       11.17	rs7325564-C	rs7325564	0	7325564		0	0.748729805345211	5E-6	5.301029995663981	(IGP9)	    .25	[0.14-0.35] unit increase	Illumina [~2.5 Million] (Imputed)	N
06/14/2013	23382691	Lauc G	01/31/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23382691 	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals		22q13.1	22	39463164	SYNGR1,TAB1,MGAT3,CACNA1I	MGAT3			4248			rs909674-C	rs909674	0	909674	intron	0	0.299056983073497	3E-9	8.522878745280337	(IGP9)	    .20	[0.13-0.27] unit increase	Illumina [~2.5 Million] (Imputed)	N
05/01/2013	23364394	Lee JY	01/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23364394 	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases; 3,591 Korean ancestry controls	3,052 Japanese ancestry cases; 4,976 Japanese ancestry controls	12q24.11	12	111241410	CUX2	CUX2			23316			rs886126-T	rs886126	0	886126	intron	0	0.66	1E-6	5.999999999999999		   1.14	[1.08-1.20] 	Affymetrix [521,786] 	N
05/01/2013	23364394	Lee JY	01/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23364394 	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases; 3,591 Korean ancestry controls	3,052 Japanese ancestry cases; 4,976 Japanese ancestry controls	12q24.11	12	110912851	MYL2	MYL2			4633			rs3782889-C	rs3782889	0	3782889	intron	0	0.21	4E-14	13.39794000867204		   1.26	[1.19-1.34] 	Affymetrix [521,786] 	N
05/01/2013	23364394	Lee JY	01/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23364394 	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases; 3,591 Korean ancestry controls	3,052 Japanese ancestry cases; 4,976 Japanese ancestry controls	13q12.3	13	28409926	FLT1	FLT1			2321			rs9508025-C	rs9508025	0	9508025	intron	0	0.50	6E-7	6.221848749616355		   1.14	[1.08-1.20] 	Affymetrix [521,786] 	N
05/01/2013	23364394	Lee JY	01/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23364394 	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases; 3,591 Korean ancestry controls	3,052 Japanese ancestry cases; 4,976 Japanese ancestry controls	9p21.3	9	22103814	CDKN2A/2B	CDKN2B-AS1			100048912			rs1333042-?	rs1333042	0	1333042	intron	0	NR	1E-9	8.999999999999998		   1.30	[1.19-1.41] 	Affymetrix [521,786] 	N
05/01/2013	23364394	Lee JY	01/31/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23364394 	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases; 3,591 Korean ancestry controls	3,052 Japanese ancestry cases; 4,976 Japanese ancestry controls	12q24.12	12	111730205	ACAD10, ALDH2, C12orf51, RPL6-PTPN11	ACAD10			80724			rs11066015-A	rs11066015	0	11066015	intron	0	NR	5E-11	10.30102999566398		   1.41	[1.27-1.56] 	Affymetrix [521,786] 	N
05/01/2013	23372041	Chu AY	01/30/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23372041 	Novel locus including FGF21 is associated with dietary macronutrient intake.	Dietary macronutrient intake	33,533 European ancestry individuuals	38,360 European ancestry individuuals	2q24.2	2	161038152	TANK	MIR4785 - TANK	100616364	10010		      630.27	       98.78	rs197273-A	rs197273	0	197273	Intergenic	1	0.48	1E-7	7	(Carbohydrates - model 2)	    .23	[0.15-0.31] percent increase	Illumina and Affymetrix [~2.6 million] (Imputed)	N
05/01/2013	23372041	Chu AY	01/30/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23372041 	Novel locus including FGF21 is associated with dietary macronutrient intake.	Dietary macronutrient intake	33,533 European ancestry individuuals	38,360 European ancestry individuuals	19q13.33	19	48756272	FGF21, FUT1, FUT2, IZUMO1, RASIP1	FUT1;FGF21			2523;26291			rs838133-A	rs838133	0	838133	nearGene-5;cds-synon	0	0.45	8E-9	8.096910013008056	(Protein - model 2)	    .11	[0.071-0.149] percent decrease	Illumina and Affymetrix [~2.6 million] (Imputed)	N
05/01/2013	23372041	Chu AY	01/30/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23372041 	Novel locus including FGF21 is associated with dietary macronutrient intake.	Dietary macronutrient intake	33,533 European ancestry individuuals	38,360 European ancestry individuuals	1q32.3	1	214088007	PROXI	PROX1 - SMYD2	5629	56950		       46.50	      193.22	rs1440620-T	rs1440620	0	1440620	Intergenic	1	0.65	1E-6	5.999999999999999	(Protein - model 2)	    .12	[0.069-0.163] percent decrease	Illumina and Affymetrix [~2.6 million] (Imputed)	N
05/16/2013	23386860	Pasquale LR	01/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/23386860	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NR	9q31.3	9	110657479	MUSK, SVEP1	SVEP1 - MUSK	79987	4593		       77.60	       11.18	rs10980508-?	rs10980508	0	10980508	Intergenic	1	NR	1E-6	5.999999999999999		    .64	[NR] unit increase	Affymetrix [681,770]	N
05/16/2013	23386860	Pasquale LR	01/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/23386860	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NR	16p12.1	16	24799360	TNRC6A	TNRC6A			27327			rs17177078-?	rs17177078	0	17177078	intron	0	NR	5E-6	5.301029995663981		    .83	[NR] unit increase	Affymetrix [681,770]	N
05/16/2013	23386860	Pasquale LR	01/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/23386860	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NR	7p21.1	7	16850188	AGR2, AGR3	LOC100287613			100287613			rs1525739-?	rs1525739	0	1525739		0	NR	6E-6	5.221848749616356		    .44	[NR] unit decrease	Affymetrix [681,770]	N
05/16/2013	23386860	Pasquale LR	01/30/2013	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/23386860	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NR	22q13.31	22	43852624	SULT4A1	SULT4A1			25830			rs470089-?	rs470089	0	470089	intron	0	NR	9E-6	5.045757490560675		    .55	[NR] unit decrease	Affymetrix [681,770]	N
05/02/2013	23364009	Yang X	01/30/2013	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/23364009 	Common variants at 12q24 are associated with drinking behavior in Han Chinese.	Drinking behavior	1,420 Han Chinese ancestry cases, 3,590 Han Chinese ancestry controls	4,896 Han Chinese ancestry cases, 13,293 Han Chinese ancestry controls	12q24.13	12	112379979	C12orf51, CCDC63, MYL2, ALDH2	HECTD4			283450			rs11066280-T	rs11066280	0	11066280	intron	0	0.84	3E-215	214.5228787452803		   3.33	[3.23-3.45] 	Affymetrix [~2.2 Million] (Imputed)	N
04/27/2013	23358156	Benyamin B	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358156	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	8q23.1	8	106832219	NR	ABRA - HMGB1P46	137735	100419978		       61.98	      340.98	rs2981205-T	rs2981205	0	2981205	Intergenic	1	0.226	5E-6	5.301029995663981		    .06	[0.035-0.085] unit decrease	Illumina & Affymetrix [138,093] (Imputed)	N
04/27/2013	23358156	Benyamin B	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358156	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	4q32.1	4	159361566	NR	MIR3688-2 - RPS14P7	100616303	100271065		      232.68	     1456.86	rs6536413-A	rs6536413	0	6536413	Intergenic	1	0.13	6E-6	5.221848749616356		    .08	[0.042-0.108] unit decrease	Illumina & Affymetrix [138,093] (Imputed)	N
04/27/2013	23358156	Benyamin B	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358156	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	20p12.1	20	13715482	NR	ESF1			51575			rs6042314-C	rs6042314	0	6042314	intron	0	0.748	7E-6	5.154901959985742		    .06	[0.033-0.083] unit increase	Illumina & Affymetrix [138,093] (Imputed)	N
04/27/2013	23358156	Benyamin B	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358156	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	12p13.32	12	5022387	NR	LOC100507560;LOC102723667			100507560;102723667			rs16932667-T	rs16932667	0	16932667	nearGene-5;intron	0	0.66	8E-6	5.096910013008055		    .05	[0.028-0.076] unit increase	Illumina & Affymetrix [138,093] (Imputed)	N
04/27/2013	23358156	Benyamin B	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358156	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	1q32.3	1	212218821	NR	MIR3122 - PPP2R5A	100422947	5525		      141.14	       66.72	rs6540731-A	rs6540731	0	6540731	Intergenic	1	0.415	9E-6	5.045757490560675		    .05	[0.028-0.072] unit decrease	Illumina & Affymetrix [138,093] (Imputed)	N
04/27/2013	23358156	Benyamin B	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358156	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	2p21	2	43908175	NR	LRPPRC			10128			rs13387221-A	rs13387221	0	13387221	intron	0	0.187	9E-6	5.045757490560675		    .06	[0.035-0.093] unit increase	Illumina & Affymetrix [138,093] (Imputed)	N
05/02/2013	23358160	Borglum AD	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358160	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	11p15.2	11	13309679	ARNTL	ARNTL			406			rs4757144-G	rs4757144	0	4757144	intron	0	0.418	5E-6	5.301029995663981		   1.15	 	Illumina [541,148]	N
05/02/2013	23358160	Borglum AD	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358160	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	16q23.3	16	82659207	CDH13	CDH13			1012			rs8057927-C	rs8057927	0	8057927	intron	0	0.069	1E-6	5.999999999999999		   1.34	 	Illumina [541,148]	N
05/02/2013	23358160	Borglum AD	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358160	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	16p13.13	16	11983775	RUNDC2A	SNX29			92017			rs12922317-G	rs12922317	0	12922317	intron	0	0.339	9E-7	6.045757490560675		   1.17	 	Illumina [541,148]	N
05/02/2013	23358160	Borglum AD	01/29/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23358160	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia (cytomegalovirus infection interaction)	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	10q21.3	10	66838534	CTNNA3	CTNNA3			29119			rs7902091-A	rs7902091	0	7902091	intron	0	NR	7E-7	6.154901959985743		   5.33	[NR] 	Illumina [541,148]	N
05/02/2013	23374588	Martinelli-Boneschi F	01/29/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/23374588 	Pharmacogenomics in Alzheimer's disease: a genome-wide association study of response to cholinesterase inhibitors.	Response to cholinesterase inhibitors in Alzheimer's disease	92 European ancestry cases, 77 European ancestry controls	94 European ancestry cases, 74 European ancestry controls	3q24	3	143286187	SLC9A9	SLC9A9			285195			rs17636071-G	rs17636071	0	17636071	intron	0	0.09	2E-6	5.698970004336018	(MMSE)	   4.74	[NR] unit decrease	Illumina [522,109]	N
05/02/2013	23374588	Martinelli-Boneschi F	01/29/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/23374588 	Pharmacogenomics in Alzheimer's disease: a genome-wide association study of response to cholinesterase inhibitors.	Response to cholinesterase inhibitors in Alzheimer's disease	92 European ancestry cases, 77 European ancestry controls	94 European ancestry cases, 74 European ancestry controls	8q24.22[rs2270875]; 8q24.22[rs7832443]			EFR3A	 - 						rs2270875-G	rs2270875, rs7832443					0.16	9E-6		(MMSE)	   2.84	[NR] unit decrease	Illumina [522,109]	N
05/02/2013	23374588	Martinelli-Boneschi F	01/29/2013	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/23374588 	Pharmacogenomics in Alzheimer's disease: a genome-wide association study of response to cholinesterase inhibitors.	Response to cholinesterase inhibitors in Alzheimer's disease	92 European ancestry cases, 77 European ancestry controls	94 European ancestry cases, 74 European ancestry controls	13q13.2[rs17798800]; 13q13.2[rs492452]			Intergenic	 - 						rs17798800-?	rs17798800, rs492452					0.71	7E-6		(cases vs. controls)	   2.63	[1.72-4] 	Illumina [522,109]	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		11q12.2	11	61790331	C11orf10, C11orf9, FADS1, FADS2, FADS3, FEN1, RAB3IL1	TMEM258			746			rs102275-C	rs102275 	0	102275	intron	0	0.328	2E-32	31.69897000433602		    .23	[0.192-0.268]  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		6q16.1	6	98014625	C6orf167 	MMS22L - MIR2113	253714	100302164		      731.38	        9.91	rs12529874-A 	rs12529874 	0	12529874	Intergenic	1	NR 	3E-7	6.522878745280337		    .48	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		13q14.12	13	44919746	NUFIP1 	TRNAE7 - NUFIP1	100189030	26747		        1.75	       19.50	rs17648246-A 	rs17648246 	0	17648246	Intergenic	1	NR 	1E-6	5.999999999999999		    .28	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		6p21.32	6	32159700	PPT2, EGFL8, AGPAT1 	PPT2;PPT2-EGFL8			9374;100532746			rs3134950-A 	rs3134950 	0	3134950	intron;intron	0	NR 	1E-6	5.999999999999999		    .09	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		3p26.2	3	3088537	IL5RA 	IL5RA			3568			rs334809-A 	rs334809 	0	334809	intron	0	NR 	1E-6	5.999999999999999		    .33	  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		11q24.1	11	123881121	PMP22CD 	OR6M3P - TMEM225	79321	338661		       18.60	        1.81	rs12280105-A 	rs12280105 	0	12280105	Intergenic	1	NR 	3E-6	5.522878745280337		    .71	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		7q32.3	7	132640550	PLXNA4 	PLXNA4			91584			rs4731889-A 	rs4731889 	0	4731889	intron	0	NR 	5E-6	5.301029995663981		    .09	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		10q11.23	10	49292414	C10orf71 	C10orf128 - C10orf71-AS1	170371	100506769		      103.82	        3.87	rs17774576-C 	rs17774576 	0	17774576	Intergenic	1	NR 	5E-6	5.301029995663981		    .39	  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/05/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) plasma levels	8,961 European ancestry individuals		10q21.1	10	59386824	FAM13C1 	FAM13C - MRPL50P4	220965	359751		       23.64	      164.58	rs11006464-T 	rs11006464 	0	11006464	Intergenic	1	NR 	5E-6	5.301029995663981		    .38	  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		1p21.3	1	95020269	ALG14, RWDD3, CNN3, TMEM56 	ALG14			199857			rs2391388-C	rs2391388 	0	2391388	intron	0	0.451	3E-11	10.52287874528034		    .18	[0.125-0.23]  unit incease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		10q24.31	10	100315722	PKD2L1, SCD 	PKD2L1			9033			rs603424-A 	rs603424 	0	603424	intron	0	NR 	2E-7	6.698970004336019		    .19	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		6q16.3	6	103351171	GRIK2 	GRIK2 - R3HDM2P2	2898	100129694		     1281.09	      666.46	rs994988-T 	rs994988 	0	994988	Intergenic	1	NR 	2E-7	6.698970004336019		    .14	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		9p23	9	11402319	PTPRD 	AKAP8P1 - JKAMPP1	646114	100049717		      389.22	      885.00	rs10809457-T 	rs10809457 	0	10809457	Intergenic	1	NR 	9E-7	6.045757490560675		    .14	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		7q36.1	7	152690784	XRCC2 	XRCC2 - ATP5F1P3	7516	644333		       14.62	       58.19	rs10234749-T 	rs10234749 	0	10234749	Intergenic	1	NR 	4E-6	5.397940008672037		    .18	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		20q13.13	20	49727774	B4GALT5 	B4GALT5 - SNRPFP1	9334	170550		       13.89	        1.80	rs1980946-C 	rs1980946 	0	1980946	Intergenic	1	NR 	4E-6	5.397940008672037		    .30	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		3p24.3	3	21677349	ZNF659 	ZNF385D			79750			rs9816269-T 	rs9816269 	0	9816269	intron	0	NR 	5E-6	5.301029995663981		    .37	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		12q24.32	12	128251977	SLC15A4 	MIR4419B - TMEM132C	100616298	92293		        7.40	       15.43	rs12297524-T 	rs12297524 	0	12297524	Intergenic	1	NR 	5E-6	5.301029995663981		    .13	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		19q13.41	19	51293045	FLJ40235 	SIGLEC24P - IGLON5	114196	402665		       11.86	       18.80	rs10414689-T 	rs10414689 	0	10414689	Intergenic	1	NR 	9E-7	6.045757490560675		    .78	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		7p14.3	7	32337136	LSM5 	SNX2P2 - SLC25A5P5	100873785	442525		      395.56	      134.29	rs10237735-T 	rs10237735 	0	10237735	Intergenic	1	NR 	1E-6	5.999999999999999		    .71	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		2q14.3	2	128746777	HS6ST1 	ISCA1P6 - RPL22P7	100130549	100129819		      227.52	     1193.07	rs7561966-A 	rs7561966 	0	7561966	Intergenic	1	NR 	3E-6	5.522878745280337		    .68	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) plasma levels	8,961 European ancestry individuals		2p23.3	2	27519736	GCKR 	GCKR			2646			rs780093-T 	rs780093 	0	780093	intron	0	NR 	3E-6	5.522878745280337		    .13	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		16p11.1	16	35853760	LOC729355 	VN1R70P - PPP1R1AP2	100130059	100129627		       15.97	       58.26	rs12599426-T 	rs12599426 	0	12599426	Intergenic	1	NR 	3E-6	5.522878745280337		    .02	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		2p23.3	2	27519736	GCKR, C2orf16, ZNF512, XAB1 	GCKR			2646			rs780093-T 	rs780093 	0	780093	intron	0	0.41	1E-9	8.999999999999998		    .02	[0.014-0.027]  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		10q24.31	10	100542700	HIF1AN, SEC31B, NDUFB8, WNT8B, SCD 	HIF1AN			55662			rs11190604-A 	rs11190604 	0	11190604	intron	0	0.782	6E-9	8.221848749616356		    .02	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		2q21.2	2	133771520	NAP5 	NCKAP5 - MGAT5	344148	4249		      129.97	      348.42	rs6722456-A 	rs6722456 	0	6722456	Intergenic	1	0.023	4E-8	7.397940008672037		    .05	[0.031-0.065]  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		17q24.3	17	69854760	KCNJ16 	LOC101928122			101928122			rs2366017-A 	rs2366017 	0	2366017	intron	0	NR 	3E-7	6.522878745280337		    .09	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		16p13.12	16	13061021	FLJ1111 	SHISA9			729993			rs4465599-A 	rs4465599 	0	4465599	intron	0	NR 	4E-7	6.397940008672037		    .03	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		2q31.1	2	170462384	MY03B	MYO3B			140469			rs2118674-A	rs2118674	0	2118674	intron	0	NR	4E-7	6.397940008672037		    .05	 unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		1p22.1	1	94067458	ABCA4 	ABCA4			24			rs1931575-T 	rs1931575 	0	1931575	intron	0	NR 	2E-6	5.698970004336018		    .02	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		10p12.1	10	29047920	LYZL1 	RPL21P93 - LYZL1	653665	84569		      148.40	      241.13	rs788076-A 	rs788076 	0	788076	Intergenic	1	NR 	2E-6	5.698970004336018		    .04	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		14q31.1	14	80939578	C14orf45 	CEP128			145508			rs12587252-T 	rs12587252 	0	12587252	intron	0	NR 	2E-6	5.698970004336018		    .08	 unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		1q32.1	1	204305391	PLEKHA6 	PLEKHA6			22874			rs7534537-T 	rs7534537 	0	7534537	intron	0	NR 	3E-6	5.522878745280337		    .06	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		13q13.3	13	37188500	CSNK1A1L 	CSNK1A1L - RPS12P24	122011	100271551		       82.84	       32.36	rs2323397-A 	rs2323397 	0	2323397	Intergenic	1	NR 	3E-6	5.522878745280337		    .04	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		2p13.3	2	69758303	ANXA4 	ANXA4			307			rs7597155-A	rs7597155 	0	7597155	intron	0	NR 	5E-6	5.301029995663981		    .01	 unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		10q24.31	10	100315722	PKD2L1	PKD2L1			9033			rs603424-A	rs603424	0	603424	intron	0	0.193	6E-15	14.22184874961635		    .03	[0.024-0.041] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) plasma levels	8,961 European ancestry individuals		11q12.2	11	61790331	C11orf0, C11orf9, FADS1, FADS2, FEN1 	TMEM258			746			rs102275-T 	rs102275 	0	102275	intron	0	0.329	7E-13	12.15490195998574		    .02	[0.017-0.03]  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		11q12.2	11	61790331	C11orf10, FADS1, FADS2, FEN1, FADS3	TMEM258			746			rs102275-C	rs102275	0	102275	intron	0	0.322	1E-20	20		    .18	[0.142-0.218] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		1p21.3	1	95050081	ALG14, TMEM56	ALG14			199857			rs6675668-T	rs6675668	0	6675668	intron	0	0.49	2E-18	17.69897000433602		    .17	[0.128-0.202] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		1p21.3	1	95231973	RWDD3 	TMEM56-RWDD3;LOC101928118			100527978;101928118			rs6671200-A 	rs6671200 	0	6671200	intron;intron	0	NR 	2E-15	14.69897000433602		    .25	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		1p21.3	1	94921652	CNN3 	CNN3			1266			rs860873-A 	rs860873 	0	860873	intron	0	NR 	2E-14	13.69897000433602		    .15	  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		1q32.3	1	211744902	LPGAT1 	LPGAT1			9926			rs11119805-A 	rs11119805 	0	11119805	UTR-3	0	0.123	3E-9	8.522878745280337		    .17	[0.113-0.223]  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		20q11.22	20	33894826	CHMP4B	CHMP4B - TPM3P2	128866	170555		       40.46	       15.92	rs742614-A 	rs742614 	0	742614	Intergenic	1	NR 	3E-7	6.522878745280337		    .10	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		10q23.1	10	85193571	GRID1	LOC101929624			101929624			rs12098564-A 	rs12098564 	0	12098564	ncRNA	0	NR 	4E-7	6.397940008672037		    .44	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		1p36.31	1	7053052	CAMTA1	CAMTA1;LOC100129476			23261;100129476			rs11120822-C 	rs11120822 	0	11120822	intron;nearGene-5	0	NR 	1E-6	5.999999999999999		    .09	  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		15q26.2	15	94775538	MCTP2	RPL26P5 - LINC01197	654386	400456		      501.54	      503.75	rs16949516-T 	rs16949516 	0	16949516	Intergenic	1	NR 	4E-6	5.397940008672037		    .20	  unit decrease 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		5q13.3	5	75006833	GCNT4	RPL27AP5 - GCNT4	100271300	51301		       16.20	       20.63	rs4555772-A 	rs4555772 	0	4555772	Intergenic	1	NR 	4E-6	5.397940008672037		    .09	  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/06/2013	23362303	Wu JH	01/29/2013	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23362303 	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) plasma levels	8,961 European ancestry individuals		1p13.3	1	109540264	GPR61 	GPR61			83873			rs7550711-T 	rs7550711 	0	7550711	intron	0	NR 	5E-6	5.301029995663981		    .27	  unit increase 	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/01/2013	23382809	Xu C	01/29/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23382809 	BCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies.	Schizophrenia (negative symptoms)	1,774 European ancestry cases, 2,726 European ancestry controls		1q21.2	1	147611315	BCL9	BCL9			607			rs583583-A	rs583583	0	583583	intron	0	0.28	6E-7	6.221848749616355		   1.30	[NR] 	Affymetrix [729,454]	N
05/01/2013	23382809	Xu C	01/29/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23382809 	BCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies.	Schizophrenia (negative symptoms)	1,774 European ancestry cases, 2,726 European ancestry controls		9q31.3	9	109037283	C9orf5	TMEM245			23731			rs643410-A	rs643410	0	643410	intron	0	0.05	1E-6	5.999999999999999		   1.60	[NR] 	Affymetrix [729,454]	N
05/01/2013	23382809	Xu C	01/29/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23382809 	BCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies.	Schizophrenia (negative symptoms)	1,774 European ancestry cases, 2,726 European ancestry controls		8q24.22	8	133656434	ST3Gal1	ST3GAL1 - MTND2P7	6482	100873179		       83.98	       98.31	rs2860223-C	rs2860223	0	2860223	Intergenic	1	0.35	2E-6	5.698970004336018		   1.26	[NR] 	Affymetrix [729,454]	N
04/23/2013	23350875	Fernandez-Rozadilla C	01/26/2013	BMC Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23350875	A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.	Colorectal cancer	882 European ancestry cases, 473 European ancestry controls	1,436 European ancestry cases, 1,780 European ancestry controls	3p21.31	3	47347457	NR	KLHL18 - PTPN23	23276	25930		         .64	       33.44	rs8180040-?	rs8180040	0	8180040	Intergenic	1	NR	2E-6	5.698970004336018		   1.28	[1.15-1.41] 	Affymetrix [674,718]	N
04/23/2013	23350875	Fernandez-Rozadilla C	01/26/2013	BMC Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23350875	A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.	Colorectal cancer	882 European ancestry cases, 473 European ancestry controls	1,436 European ancestry cases, 1,780 European ancestry controls	8p12	8	29486945	NR	DUSP4 - RPL17P33	1846	646909		      136.20	      145.11	rs12548021-?	rs12548021	0	12548021	Intergenic	1	NR	3E-6	5.522878745280337		   1.28	[1.155-1.418] 	Affymetrix [674,718]	N
04/23/2013	23350875	Fernandez-Rozadilla C	01/26/2013	BMC Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23350875	A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.	Colorectal cancer	882 European ancestry cases, 473 European ancestry controls	1,436 European ancestry cases, 1,780 European ancestry controls	8q22.1	8	95583508	NR	LOC100616530			100616530			rs3104964-?	rs3104964	0	3104964	intron	0	NR	4E-6	5.397940008672037		   1.27	[1.144-1.398] 	Affymetrix [674,718]	N
04/24/2013	23354978	Rinella ES	01/25/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23354978	Genetic variants associated with breast cancer risk for Ashkenazi Jewish women with strong family histories but no identifiable BRCA1/2 mutation.	Breast cancer	477 Ashkenazi Jewish cases, 524 Ashkenazi Jewish controls	203 Ashkenazi Jewish cases, 263 Ashkenazi Jewish contols	6p22.3	6	19443704	Intergenic	RNA5SP205 - KRT18P38	100873466	441133		        5.29	      168.98	rs16882214-?	rs16882214	0	16882214	Intergenic	1	0.81	2E-6	5.698970004336018	(Meta P value)	   1.43	[NR] 	Affymetrix [435,632]	N
04/24/2013	23354978	Rinella ES	01/25/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23354978	Genetic variants associated with breast cancer risk for Ashkenazi Jewish women with strong family histories but no identifiable BRCA1/2 mutation.	Breast cancer	477 Ashkenazi Jewish cases, 524 Ashkenazi Jewish controls	203 Ashkenazi Jewish cases, 263 Ashkenazi Jewish contols	15q24.3	15	77977130	Intergenic	ADAMTS7P3			400406			rs12906542-?	rs12906542	0	12906542		0	0.93	7E-7	6.154901959985743	(Meta P value)	   2.00	[NR] 	Affymetrix [435,632]	N
04/24/2013	23354978	Rinella ES	01/25/2013	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23354978	Genetic variants associated with breast cancer risk for Ashkenazi Jewish women with strong family histories but no identifiable BRCA1/2 mutation.	Breast cancer	477 Ashkenazi Jewish cases, 524 Ashkenazi Jewish controls	203 Ashkenazi Jewish cases, 263 Ashkenazi Jewish contols	10q26.13	10	121579461	FGFR2	FGFR2			2263			rs1078806-C	rs1078806	0	1078806	intron	0	0.39	2E-6	5.698970004336018	(Pooled P value)	   1.43	[NR] 	Affymetrix [435,632]	N
04/18/2013	23349225	Hwang JY	01/24/2013	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349225	Meta-analysis identifies a MECOM gene as a novel predisposing factor of osteoporotic fracture.	Osteoporosis	288 Korean ancestry cases, 1,139 Korean ancestry controls	831 East Asian ancestry cases, 2305 East Asian ancestry controls	3q26.2	3	169253443	MECOM	MECOM			2122			rs784288-A	rs784288	0	784288	intron	0	0.23	4E-8	7.397940008672037		   1.39	[1.24-1.56] 	Affymetrix [1,573,409] (Imputed)	N
04/18/2013	23337944	Haghighi A	01/22/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23337944	Opioid receptor mu 1 gene, fat intake and obesity in adolescence.	Fat intake	598 European ancestry adolescents	490 European ancestry young adults	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [530,011]	N
04/17/2013	23337848	Posti JP	01/18/2013	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23337848	A polymorphism in the protein kinase C gene PRKCB is associated with α2-adrenoceptor-mediated vasoconstriction.	Vascular constriction	64 European ancestry individuals	68 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [433,378]	N
04/17/2013	23341777	Dong J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23341777	Genome-wide association study identifies a novel susceptibility locus at 12q23.1 for lung squamous cell carcinoma in han chinese.	Squamous cell carcinoma	833 Han Chinese ancestry cases, 3,094 Han Chinese ancestry controls	2,223 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	12q23.1	12	100426307	SLC17A8, NR1H4, SCYL2, GAS2L3	SLC17A8 - NR1H4	246213	9971		        4.25	       47.40	rs12296850-A	rs12296850	0	12296850	Intergenic	1	0.744	1E-10	10		   1.28	[1.19-1.39] 	Affymetrix [570,009] 	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p23	6	14636732	RNF182, JARID2	LOC101928354			101928354			rs707824-T	rs707824	0	707824	intron	0	NR	6E-7	6.221848749616355	(NHL)	   1.33	[1.17-1.47] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32614112	HLA-DRB5, HLA-DQA1	TRNAI25			100189401			rs4530903-T	rs4530903	0	4530903		0	NR	3E-6	5.522878745280337	(LYM)	   1.29	[1.16-1.43] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32614112	HLA-DRB5, HLA-DQA1	TRNAI25			100189401			rs4530903-T	rs4530903	0	4530903		0	NR	2E-8	7.698970004336018	(NHL)	   1.37	[1.23-1.54] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	11q12.1	11	58292720	LPXN	OR10Q2P			81345			rs12289961-T	rs12289961	0	12289961		0	NR	4E-8	7.397940008672037	(LYM)	   1.29	[1.17-1.40] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	11q12.1	11	58292720	LPXN	OR10Q2P			81345			rs12289961-T	rs12289961	0	12289961		0	NR	1E-7	7	(NHL)	   1.29	[1.17-1.42] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	11q12.1	11	58580292	ZFP91-CNTF	ZFP91;ZFP91-CNTF			80829;386607			rs948562-G	rs948562	0	948562	intron;intron	0	NR	6E-7	6.221848749616355	(LYM)	   1.29	[1.16-1.43] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	11q12.1	11	58580292	ZFP91-CNTF   	ZFP91;ZFP91-CNTF			80829;386607			rs948562-G	rs948562	0	948562	intron;intron	0	NR	3E-7	6.522878745280337	(NHL)	   1.32	[1.18-1.46] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32700559	HLA-DQB1, HLA-DQA2	TRNAI25			100189401			rs2647046-?	rs2647046	0	2647046		0	NR	2E-6	5.698970004336018	(NHL)	   1.25	[1.14-1.37] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32762235	HLA-DQB2	HLA-DQB2			3120			rs7453920-?	rs7453920	0	7453920	intron	0	NR	5E-6	5.301029995663981	(LYM)	   1.19	[1.11-1.3] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32614112	HLA-DRB5, HLA-DQA1	TRNAI25			100189401			rs4530903-T	rs4530903	0	4530903		0	NR	3E-12	11.52287874528034	(FL)	   1.93	[NR] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32461866	HLA-DRA, HLA-DRB5, HLA-DRB1, BTLN2 	TRNAI25			100189401			rs9268853-C	rs9268853	0	9268853		0	NR	2E-10	9.698970004336017	(FL)	   1.56	[NR] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32700323	HLA-DQB1, HLA-DQA2	TRNAI25			100189401			rs2647045-?	rs2647045	0	2647045		0	NR	4E-10	9.397940008672037	(FL)	   1.69	[NR] 	Affymetrix [530,583]	N
04/17/2013	23349640	Vijai J	01/17/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23349640	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin’s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin’s Lymphoma cases, 198 other non-Hodgkin’s Lymphoma cases, 202 Hodgkin’s Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin’s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin’s Lymphoma cases, 577 European ancestry other non-Hodgkin’s Lymphoma cases, 99 European ancestry Hodgkin’s Lymphoma cases, 2,596 European ancestry controls	6p21.32	6	32774091	HLA-DQB2, TAP2	TRNAI25			100189401			rs2621416-G	rs2621416	0	2621416		0	NR	2E-9	8.698970004336019	(FL)	   1.57	[NR] 	Affymetrix [530,583]	N
04/04/2013	23328707	Tin A	01/16/2013	Nephrol Dial Transplant	http://www.ncbi.nlm.nih.gov/pubmed/23328707	Genome-wide significant locus of beta-trace protein, a novel kidney function biomarker, identified in European and African Americans.	Beta-trace protein levels	6,720 European ancestry individuals 	1,734 African American individuals	9q34.3	9	136968181	PTGDS	LOC101928638			101928638			rs57024841-A	rs57024841	0	57024841	nearGene-5	0	0.58	1E-23	23	(EA)	    .05	[0.040-0.060] unit increase	Affymetrix [~2.5 Million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		2p13.3	2	70905884	VAX2	VAX2			25806			rs3771395-G	rs3771395	0	3771395	intron	0	0.16	2E-7	6.698970004336019		    .08	[NR] unit decrease	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		7q36.3	7	156044601	SHH	SHH - LINC01006	6469	100506380		      232.33	      427.50	rs10226930-C	rs10226930	0	10226930	Intergenic	1	0.07	8E-7	6.096910013008056		   1.38	[NR] unit decrease	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		5p15.2	5	13798450	DNAH5	DNAH5			1767			rs795544-?	rs795544	0	795544	intron	0	0.17	1E-6	5.999999999999999		    .06	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		16p12.3	16	17645835	XYLT1	XYLT1 - RPL7P47	64131	146110		      174.95	      286.88	rs12445126-G	rs12445126	0	12445126	Intergenic	1	0.09	2E-6	5.698970004336018		    .09	[NR] unit decrease	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		6q12	6	66538517	Intergenic	NUFIP1P - RNA5SP208	89761	100873468		      443.57	      928.71	rs9445732-G	rs9445732	0	9445732	Intergenic	1	0.05	2E-6	5.698970004336018		   1.28	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		16q24.1	16	86451525	FOXF1	LINC00917 - FENDRR	732275	400550		      105.85	       23.00	rs11644988-G	rs11644988	0	11644988	Intergenic	1	0.12	2E-6	5.698970004336018		    .13	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		11q21	11	96290050	MAML2	MAML2			84441			rs485842-A	rs485842	0	485842	intron	0	0.261	2E-6	5.698970004336018		    .06	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		1p35.3	1	27935898	NR	SMPDL3B			27293			rs4409675-T	rs4409675	0	4409675	intron	0	NR	2E-6	5.698970004336018		    .06	[NR] unit decrease	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		10p14	10	10346232	NR	CUX2P1 - SFTA1P	100126596	207107		       88.86	      438.21	rs7092703-C	rs7092703	0	7092703	Intergenic	1	NR	3E-6	5.522878745280337		    .05	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		10q21.1	10	58559137	NR	BICC1			80114			rs1658442-A	rs1658442	0	1658442	intron	0	NR	3E-6	5.522878745280337		    .06	[NR] unit decrease	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		14q32.31	14	101073047	NR	MEG9			100507257			rs7147503-C	rs7147503	0	7147503	intron	0	NR	5E-6	5.301029995663981		    .05	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		3p14.1	3	65341207	NR	ADAMTS9-AS2 - MAGI1	100507098	9223		      329.74	       12.32	rs6764388-T	rs6764388	0	6764388	Intergenic	1	NR	6E-6	5.221848749616356		    .05	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		1q25.1	1	175746470	NR	TNR - RPS29P5	7143	100271124		        2.85	      175.47	rs17312292-C	rs17312292	0	17312292	Intergenic	1	NR	7E-6	5.154901959985742		    .88	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		15q26.3	15	101181687	NR	CHSY1			22856			rs12593811-T	rs12593811	0	12593811	intron	0	NR	7E-6	5.154901959985742		    .23	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		8p22	8	15339908	NR	MIR383 - TUSC3	494332	7991		      486.40	      200.18	rs12676170-A	rs12676170	0	12676170	Intergenic	1	NR	8E-6	5.096910013008055		    .05	[NR] unit decrease	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		9p22.2	9	16970811	NR	LSM1P1 - RPL31P42	100820732	100271197		      195.07	      137.49	rs4961511-G	rs4961511	0	4961511	Intergenic	1	NR	9E-6	5.045757490560675		    .05	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
05/10/2013	23322567	Lopes MC	01/15/2013	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23322567	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		4q26	4	119266456	NR	USP53			54532			rs11098499-C	rs11098499	0	11098499	intron	0	NR	9E-6	5.045757490560675		    .05	[NR] unit increase	Illumina & Affymetrix [2.8 million] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	1p35.2	1	30842746	Intergenic	MIR4420 - SDC3	100616164	9672		      103.51	       26.72	rs4949316-G	rs4949316	0	4949316	Intergenic	1	NR	9E-6	5.045757490560675		    .21	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	1q31.1	1	187442910	Intergenic	PLA2G4A - FDPSP1	5321	343332		      453.93	      120.12	rs2244067-T	rs2244067	0	2244067	Intergenic	1	NR	7E-6	5.154901959985742		    .21	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	1q32.3	1	213661300	Intergenic	RPL31P13 - PROX1-AS1	100270983	100505832		      232.24	      160.58	rs4655303-T	rs4655303	0	4655303	Intergenic	1	NR	5E-6	5.301029995663981		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	2p22.3	2	35437731	Intergenic	SLC25A5P2 - MIR548AD	344371	100616475		     1596.99	       33.67	rs13402855-C	rs13402855	0	13402855	Intergenic	1	NR	2E-6	5.698970004336018		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	6q27	6	167988248	KIF25, HGC6.3, HGC6.1.1, MLLT4	HGC6.3 - KIF25-AS1	100128124	100505879		       11.31	        5.94	rs2843012-A	rs2843012	0	2843012	Intergenic	1	NR	6E-6	5.221848749616356		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	8p23.2	8	5369580	Intergenic	RSL24D1P7 - RPL23AP54	100129861	100271466		      296.66	      106.93	rs77265424-G	rs77265424	0	77265424	Intergenic	1	NR	4E-6	5.397940008672037		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	8p23.2	8	6295398	Intergenic	RPL23AP54 - MCPH1	100271466	79648		      818.43	      111.19	rs6559140-A	rs6559140	0	6559140	Intergenic	1	NR	7E-6	5.154901959985742		    .22	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	8q24.13	8	121694051	Intergenic	HAS2-AS1 - MRPS36P3	594842	347704		       48.73	      397.42	rs279612-G	rs279612	0	279612	Intergenic	1	NR	7E-6	5.154901959985742		    .21	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	9q21.13	9	76050860	PCSK5	PCSK5			5125			rs7047865-G	rs7047865	0	7047865	intron	0	NR	5E-6	5.301029995663981		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	11q24.3	11	128946326	TP53AIP1, ARHGAP32, 5S_rRNA	TP53AIP1 - ARHGAP32	63970	9743		        2.93	       18.73	rs11221522-A	rs11221522	0	11221522	Intergenic	1	NR	5E-7	6.30102999566398		    .24	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	13q31.3	13	91080516	Intergenic	BRK1P2 - LINC00380	100874492	101930747		       56.57	        6.74	rs61970269-T	rs61970269	0	61970269	Intergenic	1	NR	3E-6	5.522878745280337		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	16q23.1	16	78301147	WWOX	WWOX			51741			rs78867184-G	rs78867184	0	78867184	intron	0	NR	9E-6	5.045757490560675		    .21	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	17p13.3	17	2241899	SRR, SMG6, AJ276246	SMG6			23293			rs11078884-C	rs11078884	0	11078884	intron	0	NR	3E-6	5.522878745280337		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	2q36.3	2	227227319	COL4A3, BC035052, AK056332	COL4A3;LOC654841			1285;654841			rs35212277-A	rs35212277	0	35212277	intron;intron	0	NR	9E-6	5.045757490560675		    .27	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	3p12.3	3	77603591	ROBO2	ROBO2			6092			rs73114594-A	rs73114594	0	73114594	intron	0	NR	7E-6	5.154901959985742		    .27	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	4p13	4	43318490	Intergenic	GRXCR1 - RPS2P21	389207	441013		      287.83	       91.51	rs2006970-C	rs2006970	0	2006970	Intergenic	1	NR	9E-6	5.045757490560675		    .27	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	6p21.1	6	41994933	CCND3	CCND3			896			rs9357377-A	rs9357377	0	9357377	intron	0	NR	5E-6	5.301029995663981		    .27	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	9p22.3	9	16000237	Intergenic	RNU6-14P - C9orf92	100873746	100129385		      223.95	      203.70	rs79156074-T	rs79156074	0	79156074	Intergenic	1	NR	2E-6	5.698970004336018		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	10q26.2	10	126134582	ADAM12	ADAM12			8038			rs1278329-G	rs1278329	0	1278329	intron	0	NR	8E-6	5.096910013008055		    .27	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	11q23.3	11	115528028	Intergenic	CADM1 - FTLP7	23705	441623		       23.51	       10.84	rs7483296-T	rs7483296	0	7483296	Intergenic	1	NR	8E-7	6.096910013008056		    .29	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	14q21.1	14	38214056	SSTR1, CLEC14A	SSTR1 - CLEC14A	6751	161198		         .99	       39.94	rs11622412-T	rs11622412	0	11622412	Intergenic	1	NR	5E-8	7.30102999566398		    .32	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	18p11.22	18	10766427	PIEZO2	PIEZO2			63895			rs2865126-A	rs2865126	0	2865126	intron	0	NR	8E-6	5.096910013008055		    .27	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	Xp21.3	23	26351782	Intergenic	MAGEB5 - VENTXP1	347541	139538		      133.51	      206.56	rs6526555-C	rs6526555	0	6526555	Intergenic	1	NR	5E-6	5.301029995663981		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	Xq24	23	117735951	Intergenic	SETP8 - KLHL13	100128536	90293		      772.28	      161.86	rs5910235-G	rs5910235	0	5910235	Intergenic	1	NR	7E-6	5.154901959985742		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	2p23.3	2	26027030	U6, RAB10	LOC102723485			102723485			rs68184094-A	rs68184094	0	68184094	intron	0	NR	2E-6	5.698970004336018		    .24	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	2p23.3	2	26444262	CCDC164, OTOF	DRC1			92749			rs3795958-G	rs3795958	0	3795958	missense	0	NR	2E-6	5.698970004336018		    .24	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	3p25.3	3	11583940	VGLL4	VGLL4			9686			rs6802119-C	rs6802119	0	6802119	intron	0	NR	2E-6	5.698970004336018		    .23	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	3p24.1	3	29234155	Intergenic	MESTP4 - RBMS3-AS3	131572	100873979		      144.54	       30.04	rs4680719-A	rs4680719	0	4680719	Intergenic	1	NR	3E-6	5.522878745280337		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	4q22.1	4	90480460	FAM190A	CCSER1			401145			rs187200046-T	rs187200046	0	187200046	intron	0	NR	2E-6	5.698970004336018		    .24	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	4q34.3	4	180308047	Intergenic	RNA5SP173 - LINC00290	100873437	728081		     1901.22	      756.04	rs17834666-A	rs17834666	0	17834666	Intergenic	1	NR	8E-6	5.096910013008055		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	6q16.1	6	92487582	Intergenic	RPL5P19 - ATF1P1	100270906	100128159		      472.94	      399.69	rs13207034-A	rs13207034	0	13207034	Intergenic	1	NR	4E-6	5.397940008672037		    .23	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	8p12	8	29248542	KIF13B	KIF13B			23303			rs2954793-T	rs2954793	0	2954793	intron	0	NR	3E-6	5.522878745280337		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	8q22.1	8	95093809	C8orf38	MIR3150A - PLEKHF2	100422964	79666		       20.82	       39.91	rs4590408-G	rs4590408	0	4590408	Intergenic	1	NR	6E-6	5.221848749616356		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	9p22.1	9	19213636	DQ572382	RPS6P10 - DENND4C	100270865	55667		       12.58	       17.13	rs141215807-T	rs141215807	0	141215807	Intergenic	1	NR	9E-6	5.045757490560675		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	9q33.3	9	127348132	GARNL3, SLC2A8	GARNL3			84253			rs7029536-T	rs7029536	0	7029536	intron	0	NR	5E-6	5.301029995663981		    .23	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	21q21.3	21	26773870	Intergenic	CYYR1 - ADAMTS1	116159	9510		      200.59	       62.42	rs2830487-A	rs2830487	0	2830487	Intergenic	1	NR	2E-7	6.698970004336019		    .25	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	21q22.2	21	38349842	ERG	SPATA20P1 - ERG	100874060	2078		      111.18	       17.42	rs2836326-G	rs2836326	0	2836326	Intergenic	1	NR	3E-6	5.522878745280337		    .23	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	1q41	1	222071916	Intergenic	DUSP10 - QRSL1P2	11221	100422330		      329.74	      189.92	rs10863681-G	rs10863681	0	10863681	Intergenic	1	NR	6E-6	5.221848749616356		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	2p23.3	2	26027030	U6, RAB10	LOC102723485			102723485			rs68184094-A	rs68184094	0	68184094	intron	0	NR	4E-6	5.397940008672037		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	3p25.3	3	11583940	VGLL4	VGLL4			9686			rs6802119-C	rs6802119	0	6802119	intron	0	NR	8E-6	5.096910013008055		    .22	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	4q22.1	4	90480460	FAM190A	CCSER1			401145			rs187200046-T	rs187200046	0	187200046	intron	0	NR	4E-6	5.397940008672037		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	6q16.1	6	92487582	Intergenic	RPL5P19 - ATF1P1	100270906	100128159		      472.94	      399.69	rs13207034-A	rs13207034	0	13207034	Intergenic	1	NR	1E-6	5.999999999999999		    .24	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	6p22.3	6	21454922	Intergenic	RPL36AP25 - LINC00581	100271331	100874531		      732.35	       31.14	rs9460635-C	rs9460635	0	9460635	Intergenic	1	NR	7E-6	5.154901959985742		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	8p12	8	29137505	KIF13B, AF086219	KIF13B			23303			rs13251954-A	rs13251954	0	13251954	intron	0	NR	2E-6	5.698970004336018		    .24	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	8q13.3	8	70227095	NCOA2	NCOA2			10499			rs72663955-G	rs72663955	0	72663955	intron	0	NR	6E-6	5.221848749616356		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	8q22.1	8	95093809	C8orf38	MIR3150A - PLEKHF2	100422964	79666		       20.82	       39.91	rs4590408-G	rs4590408	0	4590408	Intergenic	1	NR	6E-6	5.221848749616356		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	20q12	20	40810843	Intergenic	MAFB - RNA5SP484	9935	100873726		      121.60	       43.28	rs4812466-T	rs4812466	0	4812466	Intergenic	1	NR	6E-6	5.221848749616356		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	21q21.3	21	26773870	Intergenic	CYYR1 - ADAMTS1	116159	9510		      200.59	       62.42	rs2830487-A	rs2830487	0	2830487	Intergenic	1	NR	5E-7	6.30102999566398		    .25	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	22q12.3	22	34975259	Intergenic	LOC101926957			101926957			rs9619497-A	rs9619497	0	9619497	intron	0	NR	5E-6	5.301029995663981		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	3p14.2	3	62126467	PTPRG, ID2B	PTPRG			5793			rs35593266-A	rs35593266	0	35593266	intron	0	NR	5E-6	5.301029995663981		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	3q21.2	3	125874014	Intergenic	LOC101927056			101927056			rs71327718-G	rs71327718	0	71327718	intron	0	NR	7E-6	5.154901959985742		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	5p13.2	5	35461098	Intergenic	PRLR - SPEF2	5618	79925		      230.38	      156.70	rs284737-C	rs284737	0	284737	Intergenic	1	NR	8E-6	5.096910013008055		    .21	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	6q25.1	6	150059748	ULBP3	PHBP1 - ULBP3	5246	79465		       15.44	        2.98	rs78546022-G	rs78546022	0	78546022	Intergenic	1	NR	4E-6	5.397940008672037		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	9q34.11	9	129587318	BC037833	LINC00963 - NTMT1	100506190	28989		       73.63	       21.57	rs73628692-T	rs73628692	0	73628692	Intergenic	1	NR	7E-6	5.154901959985742		    .21	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	11p13	11	31863373	RCN1, DKFZp686K1684	DKFZp686K1684			440034			rs11031492-G	rs11031492	0	11031492	intron	0	NR	4E-6	5.397940008672037		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	12q13.11	12	47421189	Intergenic	MIR4494 - RPAP3	100616478	79657		       56.92	      240.74	rs1881744-A	rs1881744	0	1881744	Intergenic	1	NR	2E-6	5.698970004336018		    .23	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	12q23.1	12	99510762	ANKS1B	ANKS1B			56899			rs1961649-T	rs1961649	0	1961649	intron	0	NR	3E-6	5.522878745280337		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	16p13.3	16	3719580	TRAP1, CREBBP	TRAP1			10131			rs56240109-G	rs56240109	0	56240109	nearGene-5	0	NR	5E-6	5.301029995663981		    .22	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	1p35.1	1	33517419	CSMD2	CSMD2			114784			rs10798959-T	rs10798959	0	10798959	intron	0	NR	8E-6	5.096910013008055		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p25.1	2	11115214	C2orf50, AX746649, FLJ33534	FLJ33534			285150			rs12692432-C	rs12692432	0	12692432	intron	0	NR	6E-6	5.221848749616356		    .29	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p23.3	2	26005338	U6, RAB10	UQCRHP2 - TRMT112P6	729769	391358		       10.07	       22.70	rs112288323-T	rs112288323	0	112288323	Intergenic	1	NR	2E-6	5.698970004336018		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p23.3	2	26444262	CCDC164,OTOF	DRC1			92749			rs3795958-G	rs3795958	0	3795958	missense	0	NR	4E-6	5.397940008672037		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p22.2	2	37730337	Intergenic	CDC42EP3 - LINC00211	10602	101929559		       57.80	       95.91	rs13012266-C	rs13012266	0	13012266	Intergenic	1	NR	7E-6	5.154901959985742		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p16.3	2	50533365	NRXN1	NRXN1			9378			rs6750634-A	rs6750634	0	6750634	intron	0	NR	4E-6	5.397940008672037		    .29	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	4q28.2	4	130105333	Intergenic	CYCSP14 - PGBD4P4	360170	100421146		       82.45	      389.34	rs114646238-C	rs114646238	0	114646238	Intergenic	1	NR	9E-6	5.045757490560675		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	4q34.3	4	180308047	Intergenic	RNA5SP173 - LINC00290	100873437	728081		     1901.22	      756.04	rs17834666-A	rs17834666	0	17834666	Intergenic	1	NR	1E-6	5.999999999999999		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	5p15.2	5	10159429	Intergenic	TAS2R1 - FAM173B	50834	134145		      529.08	       66.08	rs2009501-C	rs2009501	0	2009501	Intergenic	1	NR	2E-6	5.698970004336018		    .30	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	5p15.2	5	10512585	Intergenic	RPL30P7 - ANKRD33B	100270979	651746		       23.40	       51.74	rs111426949-T	rs111426949	0	111426949	Intergenic	1	NR	6E-6	5.221848749616356		    .29	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	6p25.3	6	1524335	BC087858, DD413621	ELF2P2 - FOXC1	260335	2296		        8.75	       86.11	rs2569872-C	rs2569872	0	2569872	Intergenic	1	NR	8E-6	5.096910013008055		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	6p23	6	14597751	Intergenic	LOC101928354			101928354			rs9296949-T	rs9296949	0	9296949	intron	0	NR	2E-6	5.698970004336018		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	7p14.3	7	32421112	Intergenic	SNX2P2 - SLC25A5P5	100873785	442525		      479.53	       50.32	rs62458065-T	rs62458065	0	62458065	Intergenic	1	NR	1E-6	5.999999999999999		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	8p23.2	8	5516018	Intergenic	RPL23AP54 - MCPH1	100271466	79648		       39.05	      890.57	rs62494762-C	rs62494762	0	62494762	Intergenic	1	NR	2E-6	5.698970004336018		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	8q21.13	8	80072800	TPD52	TPD52			7163			rs181166265-C	rs181166265	0	181166265	intron	0	NR	3E-6	5.522878745280337		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	9p13.1	9	38750582	Intergenic	YWHABP1 - VN2R3P	647051	100033392		      106.81	      276.07	rs184891496-C	rs184891496	0	184891496	Intergenic	1	NR	7E-6	5.154901959985742		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	10p12.33	10	18236241	CACNB2	CACNB2			783			rs2482109-G	rs2482109	0	2482109	intron	0	NR	3E-6	5.522878745280337		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	11q23.3	11	115528028	Intergenic	CADM1 - FTLP7	23705	441623		       23.51	       10.84	rs7483296-T	rs7483296	0	7483296	Intergenic	1	NR	5E-7	6.30102999566398		    .32	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	13q12.3	13	31551178	Intergenic	ANKRD26P4 - RXFP2	100873882	122042		      238.25	      188.36	rs1902272-C	rs1902272	0	1902272	Intergenic	1	NR	1E-6	5.999999999999999		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	14q32.11	14	89831931	BX247991, EFCAB11	EFCAB11			90141			rs8021963-C	rs8021963	0	8021963	intron	0	NR	2E-6	5.698970004336018		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	15q23	15	71877125	SENP8, NR2E3, MYO9A, GRAMD2	MYO9A			4649			rs12050794-G	rs12050794	0	12050794	intron	0	NR	2E-6	5.698970004336018		    .30	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	16p13.3	16	4953073	SEC14L5, PPL	PPL - SEC14L5	5493	9717		       15.94	        5.24	rs34924084-A	rs34924084	0	34924084	Intergenic	1	NR	2E-6	5.698970004336018		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	22q12.1	22	27039858	AK055980	RPL15P22 - MN1	100130624	4330		      152.28	      708.42	rs742004-A	rs742004	0	742004	Intergenic	1	NR	3E-6	5.522878745280337		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	Xp21.3	23	26351782	VENTXP1	MAGEB5 - VENTXP1	347541	139538		      133.51	      206.56	rs6526555-C	rs6526555	0	6526555	Intergenic	1	NR	4E-6	5.397940008672037		    .30	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	Xp21.2	23	30101660	Intergenic	PIGFP3 - MAGEB2	100129049	4113		       83.78	      113.90	rs6628506-A	rs6628506	0	6628506	Intergenic	1	NR	1E-6	5.999999999999999		    .33	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	1p36.31	1	5647756	AK125078	MIR4417 - MIR4689	100616489	100616421		       83.61	      214.92	rs4845812-T	rs4845812	0	4845812	Intergenic	1	NR	5E-6	5.301029995663981		    .29	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	1q32.1	1	203523592	OPTC	OPTC - ATP2B4	26254	493		       14.64	      103.20	rs13303128-C	rs13303128	0	13303128	Intergenic	1	NR	9E-6	5.045757490560675		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	2q22.1	2	138641784	Intergenic	SPOPL - NXPH2	339745	11249		       68.55	       27.37	rs58938945-A	rs58938945	0	58938945	Intergenic	1	NR	8E-6	5.096910013008055		    .28	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	2q35	2	217449530	DIRC3	DIRC3			729582			rs11689435-T	rs11689435	0	11689435	intron	0	NR	4E-6	5.397940008672037		    .29	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	3q26.31	3	175385825	NAALADL2, MIR4789	NAALADL2			254827			rs62287976-T	rs62287976	0	62287976	intron	0	NR	1E-6	5.999999999999999		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	4p15.33	4	12109925	Intergenic	RNA5SP156 - HSP90AB2P	100873422	391634		      695.77	     1226.46	rs187075894-C	rs187075894	0	187075894	Intergenic	1	NR	8E-7	6.096910013008056		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	4q23	4	99523527	C4orf17	C4orf17			84103			rs13126513-C	rs13126513	0	13126513	intron	0	NR	8E-6	5.096910013008055		    .29	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	6q13	6	71016836	Intergenic	B3GAT2 - LYPLA1P3	135152	157713		       59.75	      148.14	rs1158058-T	rs1158058	0	1158058	Intergenic	1	NR	5E-6	5.301029995663981		    .29	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	6q13	6	74448550	AF086303	LOC101928516			101928516			rs72960926-A	rs72960926	0	72960926	intron	0	NR	2E-6	5.698970004336018		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	9q31.1	9	103607662	Intergenic	CYLC2 - RNA5SP291	1539	100873544		      589.17	       81.81	rs144649413-A	rs144649413	0	144649413	Intergenic	1	NR	9E-6	5.045757490560675		    .28	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	10q25.1	10	106494706	Intergenic	YWHAZP5 - RPL23AP59	86123	100271618		      804.98	       55.40	rs2039964-A	rs2039964	0	2039964	Intergenic	1	NR	7E-6	5.154901959985742		    .29	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	10q26.11	10	117845427	Intergenic	EMX2 - RAB11FIP2	2018	22841		      295.88	      159.49	rs1925265-G	rs1925265	0	1925265	Intergenic	1	NR	5E-6	5.301029995663981		    .29	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	10q26.2	10	126579071	C10orf90	C10orf90 - DOCK1	118611	1793		       54.20	      326.34	rs11245052-A	rs11245052	0	11245052	Intergenic	1	NR	2E-6	5.698970004336018		    .30	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	11p12	11	38257400	Intergenic	RPL7AP56 - RPL18P8	100271536	100129670		      530.91	      904.04	rs5004866-T	rs5004866	0	5004866	Intergenic	1	NR	2E-6	5.698970004336018		    .30	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	12q24.11	12	109960340	GIT2, TCHP, ANKRD13A	GIT2			9815			rs4766646-T	rs4766646	0	4766646	intron	0	NR	4E-7	6.397940008672037		    .32	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	16p13.2	16	7853607	Intergenic	RPS26P51 - TMEM114	100271576	283953		      726.97	      715.89	rs12446289-C	rs12446289	0	12446289	Intergenic	1	NR	6E-6	5.221848749616356		    .29	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	16p13.13	16	10536920	EMP2	EMP2			2013			rs6498068-C	rs6498068	0	6498068	intron	0	NR	6E-6	5.221848749616356		    .29	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	18q21.31	18	57829073	Intergenic	MRPS17P7 - RSL24D1P11	342776	284288		       64.86	        9.40	rs62094879-T	rs62094879	0	62094879	Intergenic	1	NR	6E-6	5.221848749616356		    .29	 unit decrease	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	20q13.33	20	60371431	AK309218	MIR646 - MTCO2P1	693231	140909		       62.86	       42.97	rs55681231-A	rs55681231	0	55681231	Intergenic	1	NR	7E-7	6.154901959985743		    .31	 unit increase	Illumina [5,767,231] (Imputed)	N
04/04/2013	23319000	Luykx JJ	01/15/2013	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23319000 	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	Xq25	23	122833506	Intergenic	RPL3P12 - MRRFP1	100131358	286423		      293.99	      282.60	rs4559365-A	rs4559365	0	4559365	Intergenic	1	NR	9E-6	5.045757490560675		    .30	 unit decrease	Illumina [5,767,231] (Imputed)	N
03/26/2013	23319801	Rafiq S	01/14/2013	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23319801 	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 Other ancestry early-onset cases	1,516 Other ancestry early-onset cases	5q14.3	5	91979496	ARRDC3	PCBP2P3 - LDHBP3	100131236	100129283		      134.97	      861.34	rs421379-?	rs421379	0	421379	Intergenic	1	0.05	1E-6	5.999999999999999		   1.61	[1.33-1.96] 	Illumina [487,496]	N
03/26/2013	23319801	Rafiq S	01/14/2013	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23319801 	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 Other ancestry early-onset cases	1,516 Other ancestry early-onset cases	15q22.2	15	61410580	RORa	RNA5SP397 - VPS13C	100873650	54832		      673.69	      441.81	rs3884558-?	rs3884558	0	3884558	Intergenic	1	0.07	4E-6	5.397940008672037		   1.46	[1.24-1.72] 	Illumina [487,496]	N
03/26/2013	23319801	Rafiq S	01/14/2013	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23319801 	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 Other ancestry early-onset cases	1,516 Other ancestry early-onset cases	17p13.1	17	9186907	NTN1	NTN1			9423			rs3785982-?	rs3785982	0	3785982	intron	0	0.12	8E-6	5.096910013008055		   1.40	[1.21-1.62] 	Illumina [487,496]	N
03/26/2013	23319801	Rafiq S	01/14/2013	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23319801 	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 Other ancestry early-onset cases	1,516 Other ancestry early-onset cases	1p13.2	1	114128347	SYT6	SYT6			148281			rs2774307-?	rs2774307	0	2774307	intron	0	0.26	8E-6	5.096910013008055		   1.30	[1.16-1.47] 	Illumina [487,496]	N
03/26/2013	23319801	Rafiq S	01/14/2013	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23319801 	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 Other ancestry early-onset cases	1,516 Other ancestry early-onset cases	1q23.3	1	164720525	PBX1	PBX1			5087			rs1387389-?	rs1387389	0	1387389	intron	0	0.36	4E-6	5.397940008672037		   1.28	[1.16-1.43] 	Illumina [487,496]	N
03/26/2013	23321320	Urabe Y	01/12/2013	J Hepatol	http://www.ncbi.nlm.nih.gov/pubmed/23321320	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	6	32347950	C6orf10	C6orf10			10665			rs910049-A	rs910049	0	910049	intron	0	0.142	9E-11	10.04575749056067		   1.46	[1.28-1.62] 	Illumina [431,618]	N
03/26/2013	23321320	Urabe Y	01/12/2013	J Hepatol	http://www.ncbi.nlm.nih.gov/pubmed/23321320	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	6	32400310	BTNL2	BTNL2			56244			rs3817963-A	rs3817963	0	3817963	intron	0	0.315	1E-8	8		   1.30	[1.18-1.42] 	Illumina [431,618]	N
03/26/2013	23321320	Urabe Y	01/12/2013	J Hepatol	http://www.ncbi.nlm.nih.gov/pubmed/23321320	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	6	32411959	Intergenic	TRNAI25			100189401			rs9405098-A	rs9405098	0	9405098		0	0.253	1E-10	10		   1.37	[1.24-1.51] 	Illumina [431,618]	N
03/26/2013	23321320	Urabe Y	01/12/2013	J Hepatol	http://www.ncbi.nlm.nih.gov/pubmed/23321320	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	6	32421871	Intergenic	TRNAI25			100189401			rs3135363-C	rs3135363	0	3135363		0	0.702	1E-10	10		   1.37	[1.24-1.51] 	Illumina [431,618]	N
03/26/2013	23321320	Urabe Y	01/12/2013	J Hepatol	http://www.ncbi.nlm.nih.gov/pubmed/23321320	A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.	Hepatitis C induced liver cirrhosis	682 Japanese ancestry cases, 1,045 Japanese ancestry controls	936 Japanese ancestry cases, 3,809 Japanese ancestry controls	6p21.32	6	32433302	Intergenic	TRNAI25			100189401			rs3129860-A	rs3129860	0	3129860		0	0.231	1E-9	8.999999999999998		   1.36	[1.22-1.49] 	Illumina [431,618]	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q31.3	1	196677046	CFH	CFH			3075			rs1329424-T	rs1329424	0	1329424	intron	0	0.38	2E-31	30.69897000433602	(EA)	   1.41	[1.33-1.49] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q25.2	1	177599664	Intergenic	BRINP2 - SEC16B	57795	89866		      317.24	      329.44	rs16851585-?	rs16851585	0	16851585	Intergenic	1	0.08	5E-6	5.301029995663981	(EA)	   1.30	[1.16-1.45] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q32.2	1	207866126	CD34, CD46	MIR29B2 - CD34	407025	947		       63.60	       20.41	rs1967689-?	rs1967689	0	1967689	Intergenic	1	0.75	5E-6	5.301029995663981	(EA)	   1.18	[1.1-1.25] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	2q14.2	2	120544335	GLI2, INHBB	LINC01101 - GLI2	84931	2736		       77.99	      252.96	rs6721654-T	rs6721654	0	6721654	Intergenic	1	0.08	7E-6	5.154901959985742	(EA)	   1.26	[1.14-1.40] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	4q26	4	116003028	Intergenic	KRT18P21 - EIF3KP3	132391	645368		       81.00	       40.35	rs17586843-T	rs17586843	0	17586843	Intergenic	1	0.78	2E-6	5.698970004336018	(EA)	   1.18	[1.10-1.27] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	6q21	6	105812253	Intergenic	RPL35P3 - PRDM1	728010	639		      509.39	      274.07	rs7750345-A	rs7750345	0	7750345	Intergenic	1	0.75	7E-6	5.154901959985742	(EA)	   1.16	[1.09-1.24] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	7p14.1	7	42136683	GLI3	GLI3			2737			rs2049622-?	rs2049622	0	2049622	intron	0	0.51	9E-6	5.045757490560675	(EA)	   1.15	[1.08-1.2] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	8q24.21	8	126320412	FAM84B	RFPL4AP5 - FAM84B	100420058	157638		      145.32	      232.03	rs11986011-T	rs11986011	0	11986011	Intergenic	1	0.02	5E-6	5.301029995663981	(EA)	   2.50	[1.68-3.71] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q21.1	10	52815236	MBL2	MBL2 - SNRPEP8	4153	100874423		       42.42	      223.05	rs6480975-C	rs6480975	0	6480975	Intergenic	1	0.84	3E-6	5.522878745280337	(EA)	   1.21	[1.12-1.32] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q26.13	10	122459759	ARMS2,HTRA1	HTRA1			5654			rs3793917-?	rs3793917	0	3793917	nearGene-5	0	0.2	4E-24	23.39794000867204	(EA)	   1.45	[1.35-1.56] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	11q14.1	11	83110340	PCF11, RAB30	COX5BP4 - BCAS2P1	1333	100127960		        3.36	       21.70	rs4293143-?	rs4293143	0	4293143	Intergenic	1	0.31	8E-6	5.096910013008055	(EA)	   1.18	[1.1-1.27] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	11q14.3	11	89180495	TYR	TYR			7299			rs621313-?	rs621313	0	621313	intron	0	0.49	4E-6	5.397940008672037	(EA)	   1.15	[1.09-1.2] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	13q13.3	13	37491309	POSTN, TRPC4	RPS12P24 - LINC00547	100271551	400121		      270.06	       43.63	rs9646096-?	rs9646096	0	9646096	Intergenic	1	0.05	6E-6	5.221848749616356	(EA)	   1.35	[1.19-1.54] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19p13.3	19	3944242	ITGB1BP3, DAPK3	NMRK2 - DAPK3	27231	1613		        1.83	       14.21	rs10406174-A	rs10406174	0	10406174	Intergenic	1	0.11	6E-6	5.221848749616356	(EA)	   1.24	[1.13-1.36] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19q13.32	19	44888997	PVRL2	PVRL2			5819			rs6857-?	rs6857	0	6857	UTR-3	0	0.85	1E-6	5.999999999999999	(EA)	   1.23	[1.14-1.35] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19q13.32	19	44892362	APOE, TOMM40	TOMM40			10452			rs2075650-A	rs2075650	0	2075650	intron	0	0.86	1E-6	5.999999999999999	(EA)	   1.23	[1.13-1.34] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q31.3	1	196685194	CFH	CFH			3075			rs1061147-A	rs1061147	0	1061147	cds-synon	0	0.37	7E-32	31.15490195998574		   1.40	[1.32-1.48] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q32.2	1	207866126	CD34, CD46	MIR29B2 - CD34	407025	947		       63.60	       20.41	rs1967689-?	rs1967689	0	1967689	Intergenic	1	0.75	5E-6	5.301029995663981		   1.18	[1.1-1.25] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	2q14.2	2	120525054	GLI2, INHBB	LINC01101 - GLI2	84931	2736		       58.71	      272.24	rs17050244-?	rs17050244	0	17050244	Intergenic	1	0.11	5E-7	6.30102999566398		   1.28	[1.16-1.41] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	4q13.1	4	62476552	Intergenic	RPL21P47 - HMGN1P11	100271164	644534		      227.78	       33.81	rs6819266-?	rs6819266	0	6819266	Intergenic	1	0.62	8E-6	5.096910013008055		   1.15	[1.09-1.22] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	4q26	4	116012923	Intergenic	KRT18P21 - EIF3KP3	132391	645368		       90.89	       30.45	rs7676999-?	rs7676999	0	7676999	Intergenic	1	0.79	1E-6	5.999999999999999		   1.19	[1.11-1.28] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	6p21.1	6	45917324	Intergenic	CLIC5			53405			rs4714888-T	rs4714888	0	4714888	intron	0	0.05	8E-6	5.096910013008055		   1.30	[1.16-1.47] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	6q21	6	105805124	Intergenic	RPL35P3 - PRDM1	728010	639		      502.27	      281.20	rs1355023-T	rs1355023	0	1355023	Intergenic	1	0.69	6E-6	5.221848749616356		   1.13	[1.07-1.20] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	8q24.21	8	126320412	Intergenic	RFPL4AP5 - FAM84B	100420058	157638		      145.32	      232.03	rs11986011-T	rs11986011	0	11986011	Intergenic	1	0.02	5E-6	5.301029995663981		   2.50	[1.68-3.71] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q21.1	10	52815236	MBL2	MBL2 - SNRPEP8	4153	100874423		       42.42	      223.05	rs6480975-C	rs6480975	0	6480975	Intergenic	1	0.84	2E-6	5.698970004336018		   1.21	[1.12-1.32] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q26.13	10	122459759	ARMS2, HTRA1	HTRA1			5654			rs3793917-?	rs3793917	0	3793917	nearGene-5	0	0.26	1E-25	25		   1.39	[1.32-1.49] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	11q14.3	11	89157946	TYR	RNU6-16P - TYR	100873753	7299		      545.04	       19.93	rs10830228-A	rs10830228	0	10830228	Intergenic	1	0.42	9E-6	5.045757490560675		   1.12	[1.06-1.18] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	13q13.3	13	37491309	POSTN, TRPC4	RPS12P24 - LINC00547	100271551	400121		      270.06	       43.63	rs9646096-?	rs9646096	0	9646096	Intergenic	1	0.05	6E-6	5.221848749616356		   1.35	[1.19-1.54] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19p13.3	19	3944242	ITGB1BP3, DAPK3	NMRK2 - DAPK3	27231	1613		        1.83	       14.21	rs10406174-A	rs10406174	0	10406174	Intergenic	1	0.11	7E-6	5.154901959985742		   1.24	[1.12-1.36] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/19/2013	23326517	Holliday EG	01/11/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326517	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19q13.32	19	44888997	PVRL2,APOE,TOMM40	PVRL2			5819			rs6857-?	rs6857	0	6857	UTR-3	0	0.85	1E-6	5.999999999999999		   1.23	[1.14-1.35] 	Illumina & Affymetrix [~2.5 million] Imputed	N
04/12/2013	23326512	Greenwood TA	01/10/2013	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23326512	Genome-wide association study of irritable vs. elated mania suggests genetic differences between clinical subtypes of bipolar disorder.	Bipolar disorder (mania)	117 European ancestry Irritable mania cases, 843 European ancestry Elated mania cases, 1033 European ancestry controls	121 European ancestry Irritable maniacases, 1026 European ancestry Elated mania cases	13q31.1	13	85091744	SLITRK1, SLITRK6	MTND5P3 - LINC00351	100873210	100874137		      567.84	      271.86	rs17079247-T	rs17079247	0	17079247	Intergenic	1	NR	8E-6	5.096910013008055	(IM vs. EM)	   1.75	 	Affymetrix [703,012]	N
03/22/2013	23303382	Hong KW	01/10/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23303382 	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	1q42.13	1	230253243	GALNT2	GALNT2			2590			rs3761944-C	rs3761944	0	3761944	intron	0	0.224	8E-6	5.096910013008055	(ALB/GLB)	    .02	[0.0082-0.0238] unit increase	Affymetrix [290,659]	N
03/22/2013	23303382	Hong KW	01/10/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23303382 	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	6p25.3	6	252145	IRF4	CICP18 - DUSP22	646070	56940		      108.08	       39.91	rs6927090-A	rs6927090	0	6927090	Intergenic	1	0.282	4E-6	5.397940008672037	(ALB/GLB)	    .02	[0.0091-0.0209] unit increase	Affymetrix [290,659]	N
03/22/2013	23303382	Hong KW	01/10/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23303382 	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	9q32	9	113234969	SLC31A1	SLC31A1			1317			rs6477998-C	rs6477998	0	6477998	intron	0	0.467	8E-6	5.096910013008055	(ALB/GLB)	    .01	[0.0071-0.0189] unit increase	Affymetrix [290,659]	N
03/22/2013	23303382	Hong KW	01/10/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23303382 	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	11q12.2	11	61803876	FADS1	FADS1			3992			rs174548-G	rs174548	0	174548	intron	0	0.319	4E-8	7.397940008672037	(ALB/GLB)	    .02	[0.011-0.023] unit increase	Affymetrix [290,659]	N
03/22/2013	23303382	Hong KW	01/10/2013	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23303382 	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	17p11.2	17	16945436	TNFRSF13B	TNFRSF13B			23495			rs4561508-T	rs4561508	0	4561508	intron	0	0.335	8E-24	23.09691001300805	(ALB/GLB)	    .03	[0.025-0.037] unit increase	Affymetrix [290,659]	N
05/01/2013	23326239	Rubicz R	01/10/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23326239	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	6	32601914	HLA-DRB1	TRNAI25			100189401			rs477515-T	rs477515	0	477515		0	0.32	3E-13	12.52287874528034	(Quantitative)	    .28	[NR] unit decrease	Illumina [944,565]	N
05/01/2013	23326239	Rubicz R	01/10/2013	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23326239	A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).	Epstein-Barr virus immune response (EBNA-1)	1,367 Mexican American indivduals	589 Mexican American indivduals	6p21.32	6	32660651	HLA-DQB1, C6orf15, PSORS1C1, HLA-B, BAT2, BAT4, EHMT2, PRRT1, NOTCH4, 	HLA-DQB1			3119			rs2854275-T	rs2854275	0	2854275	intron	0	0.064	2E-10	9.698970004336017	(Conditional on rs477515 - Quantitative)	    .45	[NR] unit decrease	Illumina [944,565]	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	1p31.3	1	66580443	SGIP1	SGIP1			84251			rs1867631-A	rs1867631	0	1867631	intron	0	0.2892	5E-6	5.301029995663981		    .11	[0.060-0.154] years decrease	NR	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	19q13.42	19	55322296	NR	TMEM150B			284417			rs11668344-A	rs11668344	0	11668344	intron	0	0.636	5E-26	25.30102999566398		    .30	[0.25-0.36] years decrease	NR	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	20p12.3	20	5967581	NR	MCM8			84515			rs16991615-A	rs16991615	0	16991615	missense	0	0.0785	5E-12	11.30102999566398		    .46	[0.33-0.59] years decrease	NR	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	6p21.33	6	31635190	NR	PRRC2A			7916			rs1046089-A	rs1046089	0	1046089	missense	0	0.3492	4E-11	10.39794000867204		    .19	[0.13-0.25] years increase	NR	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	16p13.13	16	11923062	NR	COX6CP1 - TNFRSF17	9384	608		       18.87	       42.05	rs10852344-T	rs10852344	0	10852344	Intergenic	1	0.5835	5E-8	7.30102999566398		    .16	[0.10-0.21] years increase	NR	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	19q13.43	19	55809297	NR	NLRP11			204801			rs12461110-A	rs12461110	0	12461110	missense	0	0.3594	9E-8	7.045757490560674		    .16	[0.098-0.212] years increase	NR	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	8p11.23	8	38120214	NR	ASH2L			9070			rs2517388-T	rs2517388	0	2517388	intron	0	0.8234	1E-7	7		    .21	[0.13-0.29] years increase	NR	N
04/17/2013	23307926	Perry JR	01/09/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23307926 	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	2q36.3	2	225360907	NYAP2	MIR4439 - NYAP2	100616207	57624		      350.37	       38.80	rs1473307-T	rs1473307	0	1473307	Intergenic	1	0.5715	3E-7	6.522878745280337		    .14	[0.089-0.199] years decrease	NR	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.31	3E-19	18.52287874528033	(Punjabi Sikhs)	   1.44	[1.33 - 1.56] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	13q12.12	13	23290518	SGCG, SACS	SGCG			6445			rs9552911-G	rs9552911	0	9552911	intron	0	0.93	2E-8	7.698970004336018	(Punjabi Sikhs)	   1.49	[1.3-1.72] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	5q33.2	5	155967220	Intergenic	PPIGP1 - SGCD	100131033	6444		      473.41	       67.92	rs17053082-T	rs17053082	0	17053082	Intergenic	1	0.1	4E-7	6.397940008672037	(Punjabi Sikhs)	   1.49	[1.28 - 1.73] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	1q42.13	1	228744368	RHOU	RHOU			58480			rs6426514-A	rs6426514	0	6426514	ncRNA	0	0.06	2E-6	5.698970004336018	(Punjabi Sikhs)	   1.51	[1.27 - 1.78] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	8q24.22	8	133184606	WISP1	MIR7848 - WISP1	102466865	8840		      138.03	        6.43	rs4527850-T	rs4527850	0	4527850	Intergenic	1	0.75	2E-6	5.698970004336018	(Punjabi Sikhs)	   1.23	[1.13 - 1.34] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	17p13.3	17	796780	NXN	RNMTL1 - NXN	55178	64359		        4.27	        2.53	rs623323-T	rs623323	0	623323	Intergenic	1	0.15	4E-6	5.397940008672037	(Punjabi Sikhs)	   1.28	[1.15 - 1.42] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	0.41	5E-6	5.301029995663981	(Punjabi Sikhs)	   1.19	[1.11-1.28] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.31	6E-22	21.22184874961636	(All Punjabi)	   1.30	[1.23 - 1.37] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	5q33.2	5	155967220	Intergenic	PPIGP1 - SGCD	100131033	6444		      473.41	       67.92	rs17053082-T	rs17053082	0	17053082	Intergenic	1	0.1	4E-7	6.397940008672037	(All Punjabi)	   1.49	[1.28 - 1.73] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	0.41	4E-7	6.397940008672037	(All Punjabi)	    .88	[0.83 - 0.92] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.3	3E-35	34.52287874528033	(South Asians)	   1.15	[1.13 - 1.18] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	0.45	4E-9	8.397940008672036	(South Asians)	   1.06	[1.04-1.09] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	20q13.31	20	57454548	HMG1L1, CTCFL, RBM38, PCK1	RBM38 - HMGB1P1	55544	10357		       45.22	       33.39	rs328506-C	rs328506	0	328506	Intergenic	1	0.8	2E-6	5.698970004336018	(South Asians)	   1.11	[1.06-1.15] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.3	2E-38	37.69897000433602	(South Asians, East Asians)	   1.15	[1.12 - 1.17] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	0.45	2E-13	12.69897000433602	(South Asians, East Asians)	   1.06	[1.04-1.08] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.5	9E-75	74.04575749056066	(South Asian, East Asian, Europeans)	   1.19	[1.17 - 1.21] 	Illumina [1,232,008] (imputed)	N
03/27/2013	23300278	Saxena R	01/08/2013	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23300278 	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh cases, 774 Punjabi Sikh controls	up to 2,512 Punjabi Sikh cases and 3,201 Punjabi Sikh controls; up to 16,128 South Asian cases and 23,846 South Asian controls; up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls; up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	0.5	2E-19	18.69897000433602	(South Asian, East Asian, Europeans)	   1.08	[1.05-1.09] 	Illumina [1,232,008] (imputed)	N
04/17/2013	23297363	Cordell HJ	01/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23297363 	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases and 2,931 European ancestry controls	10p14	10	8912261	Intergenic	RNA5SP299 - LINC00709	100873574	100507163		      255.43	      363.35	rs2388896-G	rs2388896	0	2388896	Intergenic	1	0.599	9E-8	7.045757490560674		   1.28	[1.15-1.43] 	Illumina [516,131]	N
04/17/2013	23297363	Cordell HJ	01/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23297363 	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases and 2,931 European ancestry controls	10p11.22	10	33186354	NRP1	NRP1			8829			rs2228638-A	rs2228638	0	2228638	missense	0	0.096	2E-7	6.698970004336019		   1.45	[1.239-1.69] 	Illumina [516,131]	N
04/17/2013	23297363	Cordell HJ	01/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23297363 	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases and 2,931 European ancestry controls	16q12.2	16	52797550	Intergenic	CASC16 - CHD9	643714	80205		      190.58	      257.44	rs6499100-A	rs6499100	0	6499100	Intergenic	1	0.519	1E-6	5.999999999999999		   1.26	[1.14-1.4] 	Illumina [516,131]	N
04/17/2013	23297363	Cordell HJ	01/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23297363 	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases and 2,931 European ancestry controls	13q31.3	13	92336070	GPC5	GPC5			2262			rs7982677-A	rs7982677	0	7982677	intron	0	0.281	3E-9	8.522878745280337		   1.29	[1.152-1.441] 	Illumina [516,131]	N
04/17/2013	23297363	Cordell HJ	01/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23297363 	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases and 2,931 European ancestry controls	12q24.12	12	111634620	PTPN11	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-G	rs11065987	0	11065987	Intergenic	1	0.418	8E-11	10.09691001300805		   1.34	[1.208-1.496] 	Illumina [516,131]	N
04/17/2013	23297363	Cordell HJ	01/07/2013	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23297363 	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases and 2,931 European ancestry controls	3q25.32	3	158735490	Intergenic	LOC100287290			100287290			rs7646881-A	rs7646881	0	7646881		0	0.168	2E-6	5.698970004336018		   1.39	[1.224-1.581] 	Illumina [516,131]	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.11	19	17791525	B3GNT3	FCHO1 - B3GNT3	23149	10331		        2.96	        3.59	rs265548-C	rs265548	0	265548	Intergenic	1	0.26	1E-13	13	(CA19-9)	    .07	[0.029-0.115] U/ml decrease	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	9q34.2	9	133255801	ABO	ABO			28			rs8176749-T	rs8176749	0	8176749	cds-synon	0	0.18	7E-105	104.1549019599857	(CEA)	    .21	[0.18-0.23] ng/ml increase	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	19	5841345	FUT6	FUT6			2528			rs3760775-T	rs3760775	0	3760775	nearGene-5	0	0.33	1E-35	35	(CEA)	    .07	[0.048-0.098] ng/ml increase	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19q13.33	19	48703374	FUT2	FUT2			2524			rs1047781-T	rs1047781	0	1047781	missense	0	0.46	6E-209	208.2218487496163	(CEA)	    .24	[0.21-0.26] ng/ml increase	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	21q22.3	21	41326980	FAM3B	FAM3B			54097			rs441810-G	rs441810	0	441810	intron	0	0.24	3E-22	21.52287874528033	(CEA)	    .07	[0.040-0.098] ng/ml increase	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	4q13.3	4	73453566	AFP	AFP			174			rs12506899-G	rs12506899	0	12506899	intron	0	0.32	3E-18	17.52287874528034	(AFP)	    .07	[0.032-0.098] ng/ml decrease	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	15q15.3	15	43544280	HISPPD2A	PPIP5K1			9677			rs2251844-C	rs2251844	0	2251844	intron	0	0.42	1E-14	14	(AFP)	    .09	[0.056-0.118] ng/ml increase	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	19	5841345	FUT6	FUT6			2528			rs3760775-T	rs3760775	0	3760775	nearGene-5	0	0.33	3E-290	289.5228787452803	(CA19-9)	    .48	[0.44-0.52] U/ml decrease	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19q13.33	19	48703374	FUT2, CA11	FUT2			2524			rs1047781-T	rs1047781	0	1047781	missense	0	0.46	8E-176	175.0969100130081	(CA19-9)	    .44	[0.41-0.48] U/ml increase	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	19	5834201	FUT6	FUT6			2528			rs17271883-G	rs17271883	0	17271883	intron	0	0.38	5E-132	131.301029995664	(CA19-9)	    .28	[0.20-0.37] U/ml increase	Illumina & Affymetrix [NR] imputed	N
04/11/2013	23300138	He M	01/07/2013	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23300138 	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	19	5839735	FUT6	FUT6			2528			rs3760776-T	rs3760776	0	3760776	nearGene-5	0	0.20	2E-56	55.69897000433601	(CA19-9)	    .17	[0.11-0.22] U/ml decrease	Illumina & Affymetrix [NR] imputed	N
03/21/2013	23291585	Donnelly	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291585	Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis.	Leishmaniasis (visceral)	889 Indian ancestry cases, 977 Indian ancestry controls, 357 Brazilian ancestry cases, and 1,615 Brazilian ancestry unaffected relatives	889 Indian ancestry cases, 948 Indian ancestry controls.	6p21.32	6	32627446	HLA-DRB1, HLA-DQA1, HLA	TRNAI25			100189401			rs9271858-G	rs9271858	0	9271858		0	0.39	3E-17	16.52287874528034		   1.41	[1.30-1.52] 	Illumina [521,134]	N
03/27/2013	23291587	Kirino Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291587 	Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish cases with uveitis, 780 Turkish cases without uveitis, 1,278 Turkish controls	355 Turkish cases with uveitis, 483 Turkish cases without uveitis, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	3p21.31	3	46164194	CCR1, CCR3	FLT1P1 - CCR1	391533	1230		       20.40	       37.52	rs7616215-C	rs7616215	0	7616215	Intergenic	1	0.654	4E-13	12.39794000867204		   1.39	[1.27-1.52] 	Illumina [779,465] (imputed)	N
03/27/2013	23291587	Kirino Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291587 	Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish cases with uveitis, 780 Turkish cases without uveitis, 1,278 Turkish controls	355 Turkish cases with uveitis, 483 Turkish cases without uveitis, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	2q32.3	2	191145762	STAT4	STAT4			6775			rs7574070-A	rs7574070	0	7574070	intron	0	0.421	1E-9	8.999999999999998		   1.27	[1.17-1.37] 	Illumina [779,465] (imputed)	N
03/27/2013	23291587	Kirino Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291587 	Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish cases with uveitis, 780 Turkish cases without uveitis, 1,278 Turkish controls	355 Turkish cases with uveitis, 483 Turkish cases without uveitis, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	12p13.2	12	10408358	KLRC4	KLRC4;KLRC4-KLRK1			8302;100528032			rs2617170-T	rs2617170	0	2617170	missense;UTR-5	0	0.63	1E-9	8.999999999999998		   1.28	[1.18-1.39] 	Illumina [779,465] (imputed)	N
03/27/2013	23291587	Kirino Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291587 	Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish cases with uveitis, 780 Turkish cases without uveitis, 1,278 Turkish controls	355 Turkish cases with uveitis, 483 Turkish cases without uveitis, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	3q25.33	3	159947262	IL12A	IL12A-AS1			101928376			rs17810546-A	rs17810546	0	17810546	intron	0	0.05	6E-7	6.221848749616355	(All Turkish cases)	   1.55	[1.30-1.85] 	Illumina [779,465] (imputed)	N
03/27/2013	23291587	Kirino Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291587 	Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish cases with uveitis, 780 Turkish cases without uveitis, 1,278 Turkish controls	355 Turkish cases with uveitis, 483 Turkish cases without uveitis, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	5q15	5	96783162	ERAP1	ERAP1;LOC102724748			51752;102724748			rs17482078-T	rs17482078	0	17482078	missense;nearGene-5	0	0.02	5E-11	10.30102999566398	(Turkish cases with Uveitis - Recessive Model)	   4.56	[2.88-7.22] 	Illumina [779,465] (imputed)	N
03/27/2013	23291587	Kirino Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291587 	Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish cases with uveitis, 780 Turkish cases without uveitis, 1,278 Turkish controls	355 Turkish cases with uveitis, 483 Turkish cases without uveitis, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	5q15	5	96783162	ERAP1	ERAP1;LOC102724748			51752;102724748			rs17482078-T	rs17482078	0	17482078	missense;nearGene-5	0	0.02	4E-8	7.397940008672037	(All Turkish cases - Recessive Model)	   3.08	[2.04-4.65] 	Illumina [779,465] (imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	1p34.3	1	36106319	COL8A2	COL8A2			1296			rs96067-A	rs96067	0	96067	intron	0	0.8	3E-11	10.52287874528034		    .03	[-0.0092-0.0692] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	2q36.3	2	227270464	COL4A3	COL4A3;LOC654841			1285;654841			rs7606754-A	rs7606754	0	7606754	intron;intron	0	0.35	1E-9	8.999999999999998		    .07	[0.05-0.09] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	3q26.31	3	172277815	FNDC3B	FNDC3B			64778			rs4894535 -T	rs4894535	0	4894535	intron	0	0.17	5E-12	11.30102999566398		    .10	[0.061-0.139] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	3q26.32	3	177586510	TBL1XR1, KCNMB2	LINC00578			100505566			rs7620503-T	rs7620503	0	7620503	intron	0	0.39	1E-8	8		    .06	[0.04-0.08] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	4q31.23	4	148158346	NR3C2	NR3C2			4306			rs3931397-T	rs3931397	0	3931397	intron	0	0.07	4E-8	7.397940008672037		    .12	[0.061-0.179] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	5q12.3	5	65329685	ADAMTS6	ADAMTS6			11174			rs2307121-T	rs2307121	0	2307121	intron	0	0.34	6E-11	10.22184874961635		    .09	[0.07-0.11] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	6q14.1	6	82084877	FAM46A, IBTK	FAM46A - IBTK	55603	25998		      332.17	       85.36	rs1538138-T	rs1538138	0	1538138	Intergenic	1	0.25	1E-12	12		    .07	[0.031-0.109] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	7q11.21	7	65861834	VKORC1L1	DKFZP434F142 - VKORC1L1	84214	154807		       19.44	       11.44	rs11763147-A	rs11763147	0	11763147	Intergenic	1	0.45	4E-9	8.397940008672036		    .07	[0.05-0.09] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	7q11.21	7	66956459	C7orf42	TMEM248			55069			rs4718428-T	rs4718428	0	4718428	UTR-3	0	0.65	3E-10	9.522878745280336		    .05	[0.03-0.07] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9p23	9	13557492	MPDZ, NF1B	LINC01235 - LINC00583	401492	100113404		      126.16	      370.48	rs1324183-A	rs1324183	0	1324183	Intergenic	1	0.2	8E-9	8.096910013008056		    .05	[0.011-0.089] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q31.3	9	110900401	LPAR1	LPAR1			1902			rs1007000-T	rs1007000	0	1007000	intron	0	0.22	5E-12	11.30102999566398		    .07	[0.031-0.109] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q34.3	9	134548682	RXRA, COL5A1	MIR4669 - COL5A1	100616236	1289		      169.21	       93.12	rs1536482-A	rs1536482	0	1536482	Intergenic	1	0.34	3E-22	21.52287874528033		    .12	[0.1-0.14] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q34.3	9	134676205	COL5A1	COL5A1			1289			rs7044529-T	rs7044529	0	7044529	intron	0	0.15	5E-12	11.30102999566398		    .13	[0.091-0.169] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	9q34.3	9	136965812	LCN12, PTGDS	LCN12 - PTGDS	286256	5730		       10.32	       11.69	rs11145951-T	rs11145951	0	11145951	Intergenic	1	0.49	6E-12	11.22184874961635		    .09	[0.07-0.11] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	10q21.2	10	62070527	ARID5B	ARID5B			84159			rs7090871-T	rs7090871	0	7090871	intron	0	0.59	6E-10	9.221848749616356		    .06	[0.04-0.08] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	11q23.1	11	111042516	ARHGAP20, POU2AF1	HNRNPA1P60 - RPS17P15	120364	100271363		      253.45	       63.05	rs4938174-A	rs4938174	0	4938174	Intergenic	1	0.31	4E-9	8.397940008672036		    .06	[0.04-0.08] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	12q23.3	12	104051964	GLT8D2	GLT8D2			83468			rs1564892-A	rs1564892	0	1564892	intron	0	0.76	2E-10	9.698970004336017		    .08	[0.041-0.119] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	13q12.11	13	22654552	FGF9, SGCG	LINC00540 - FTH1P7	100506622	2500		      378.03	       41.31	rs1034200-A	rs1034200	0	1034200	Intergenic	1	0.23	4E-9	8.397940008672036		    .10	[0.061-0.139] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	13q14.11	13	40536747	FOXO1	LOC100289058			100289058			rs2721051-T	rs2721051	0	2721051		0	0.11	4E-14	13.39794000867204		    .17	[0.13-0.21] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q13.1	15	29881682	TJP1	TJP1			7082			rs785422-T	rs785422	0	785422	intron	0	0.11	3E-11	10.52287874528034		    .14	[0.1-0.18] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q22.33	15	67175169	SMAD3	SMAD3			4088			rs12913547-T	rs12913547	0	12913547	intron	0	0.77	5E-10	9.301029995663981		    .08	[0.041-0.119] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q25.3	15	85282336	AKAP13	ADAMTS7P4 - AKAP13	642935	11214		       11.48	       98.25	rs6496932-A	rs6496932	0	6496932	Intergenic	1	0.2	7E-13	12.15490195998574		    .11	[0.071-0.149] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q26.3	15	101018357	LRRK1	LRRK1			79705			rs930847-T	rs930847	0	930847	intron	0	0.77	6E-19	18.22184874961635		    .11	[0.071-0.149] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q26.3	15	101241729	CHSY1	CHSY1			22856			rs752092-A	rs752092	0	752092	intron	0	0.66	2E-9	8.698970004336019		    .08	[0.06-0.1] unit decrease	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	16q24.2	16	88298034	BANP, ZNF469	BANP - ZNF469	54971	84627		      220.72	      129.44	rs9938149-A	rs9938149	0	9938149	Intergenic	1	0.62	2E-49	48.69897000433601		    .17	[0.15-0.19] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/28/2013	23291589	Lu Y	01/06/2013	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23291589 	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	17p12	17	14657699	HS3ST3B1, PMP22	MGC12916 - RPS18P12	84815	388339		      351.95	       47.34	rs12940030-T	rs12940030	0	12940030	Intergenic	1	0.71	7E-10	9.154901959985741		    .08	[0.06-0.1] unit increase	Illumina & Affymetrix [~1 Million] (Imputed)	N
03/20/2013	23401653	Guggenheim JA	01/03/2013	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/23401653	A genome-wide association study for corneal curvature identifies the platelet-derived growth factor receptor α gene as a quantitative trait locus for eye size in white Europeans.	Corneal curvature	2,023 European ancestry children	2,008 Chinese ancestry adults, 2,281 Malay ancestry adults, 2,142 Indian ancestry adults, 929 Chinese ancestry children	4q12	4	54221414	PDGFRA	RPL22P13			442108			rs17084051-A	rs17084051	0	17084051		0	NR	5E-14	13.30102999566398		    .13	[0.093-0.159] (unit decrease)	Illumina [2,543,887] (Imputed)	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	11p13	11	34533644	ELF5	ELF5 - EHF	2001	26298		       19.84	       87.40	rs836132-C	rs836132	0	836132	Intergenic	1	0.15	5E-8	7.30102999566398		    .65	 (unit increase)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	11p15.4	11	9090011	SCUBE2	SCUBE2;MIR5691			57758;100847015			rs963167-C	rs963167	0	963167	intron;nearGene-3	0	0.15	1E-7	7		    .65	 (unit increase)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	11p15.4	11	9087740	SCUBE2	SCUBE2			57758			rs2647528-C	rs2647528	0	2647528	intron	0	0.17	3E-7	6.522878745280337		    .59	 (unit increase)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	17q24.1	17	66137608	CEP112	CEP112			201134			rs7209395-T	rs7209395	0	7209395	intron	0	0.34	7E-7	6.154901959985743		    .44	 (unit increase)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	17q24.2	17	66240200	APOH	APOH - RNA5SP444	350	100873690		       10.76	       27.54	rs10048158-C	rs10048158	0	10048158	Intergenic	1	0.5	1E-6	5.999999999999999		    .41	 (unit decrease)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	17q24.1	17	66102427	CEP112	CEP112			201134			rs2319125-C	rs2319125	0	2319125	intron	0	0.46	1E-6	5.999999999999999		    .42	 (unit increase)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	20q13.33	20	61806743	CDH4	CDH4			1002			rs4925295-A	rs4925295	0	4925295	intron	0	0.16	2E-6	5.698970004336018		    .52	 (unit decrease)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	5p14.1	5	25692864	CDH10, CDH9	CDH10 - MSNP1	1008	4479		     1047.89	      216.44	rs193741-A	rs193741	0	193741	Intergenic	1	0.14	2E-6	5.698970004336018		    .64	 (unit decrease)	Illumina [283,437]	N
03/19/2013	23279374	Athanasiadis G	01/02/2013	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/23279374 	Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	β2-Glycoprotein I (β2-GPI) plasma levels	306 European ancestry individuals	NR	10q24.2	10	99605556	SLC25A28	NKX2-3 - SLC25A28	159296	81894		       69.03	        4.96	rs11190179-G	rs11190179	0	11190179	Intergenic	1	0.12	2E-6	5.698970004336018		    .65	 (unit increase)	Illumina [283,437]	N
04/09/2013	23290196	Hek K	01/02/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23290196 	A genome-wide association study of depressive symptoms.	Depression (quantitative trait)	up to 34,549 European ancestry individuals	up to 16,709 European ancestry individuals	14q23.3	14	66987141	GPHN	GPHN			10243			rs8020095-A	rs8020095	0	8020095	intron	0	0.17	3E-6	5.522878745280337		NR	NR	Illumina & Affymetrix [2,391,896] (Imputed)	N
04/09/2013	23290196	Hek K	01/02/2013	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23290196 	A genome-wide association study of depressive symptoms.	Depression (quantitative trait)	up to 34,549 European ancestry individuals	up to 16,709 European ancestry individuals	5q21.2	5	104734216	NUDT12	NUDT12 - RAB9BP1	83594	9366		     1171.42	      365.26	rs161645-A	rs161645	0	161645	Intergenic	1	0.34	8E-8	7.096910013008055		NR	NR	Illumina & Affymetrix [2,391,896] (Imputed)	N
06/18/2013	23703922	Li WD	01/02/2013	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23703922	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NR	4p16.1	4	9992591	SLC2A9	SLC2A9			56606			rs6449213-?	rs6449213	0	6449213	intron	0	NR	3E-12	11.52287874528034		NR	NR	Illumina [~550,000] 	N
06/18/2013	23703922	Li WD	01/02/2013	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23703922	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NR	1q24.2	1	169529737	F5	F5			2153			rs6030-?	rs6030	0	6030	missense	0	NR	3E-6	5.522878745280337	(Obese)	NR	NR	Illumina [~550,000] 	N
06/18/2013	23703922	Li WD	01/02/2013	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23703922	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NR	4q21.21	4	78158603	FRAS1	FRAS1			80144			rs17002988-?	rs17002988	0	17002988	intron	0	NR	6E-6	5.221848749616356	(Obese)	NR	NR	Illumina [~550,000] 	N
06/18/2013	23703922	Li WD	01/02/2013	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23703922	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NR	10p15.3	10	725592	DIP2C	PRR26 - LARP4B	414235	23185		       60.42	       81.32	rs877282-?	rs877282	0	877282	Intergenic	1	NR	5E-8	7.30102999566398	(Obese)	NR	NR	Illumina [~550,000] 	N
06/18/2013	23703922	Li WD	01/02/2013	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23703922	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NR	4p16.1	4	9992591	SLC2A9	SLC2A9			56606			rs6449213-?	rs6449213	0	6449213	intron	0	NR	2E-7	6.698970004336019	(Obese)	NR	NR	Illumina [~550,000] 	N
06/18/2013	23703922	Li WD	01/02/2013	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23703922	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NR	4p16.1	4	10284677	SLC2A9	RAF1P1 - ZNF518B	348910	85460		       28.02	      155.20	rs4698014-?	rs4698014	0	4698014	Intergenic	1	NR	8E-13	12.09691001300806	(Non-obese)	NR	NR	Illumina [~550,000] 	N
03/27/2013	23359319	Jin G	01/01/2013	Neoplasia	http://www.ncbi.nlm.nih.gov/pubmed/23359319	Genome-wide association study identifies loci at ATF7IP and KLK2 associated with percentage of circulating free PSA.	Prostate-specific antigen levels	3,192 European ancestry individuals	1,722 European ancestry individuals	12p13.1	12	14434367	ATF7IP	ATF7IP			55729			rs3213764-G	rs3213764	0	3213764	missense	0	0.467	2E-9	8.698970004336019		    .05	 % increase	Illumina [642,584]	N
03/27/2013	23359319	Jin G	01/01/2013	Neoplasia	http://www.ncbi.nlm.nih.gov/pubmed/23359319	Genome-wide association study identifies loci at ATF7IP and KLK2 associated with percentage of circulating free PSA.	Prostate-specific antigen levels	3,192 European ancestry individuals	1,722 European ancestry individuals	19q13.33	19	50889862	KLK2, KLKP1	KLKP1			606293			rs1354774-G	rs1354774	0	1354774	intron	0	0.343	6E-20	19.22184874961636		    .06	 % increase	Illumina [642,584]	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	6p25.1	6	6318562	F13A1	F13A1			2162			rs5985-C	rs5985	0	5985	missense	0	0.741	3E-186	185.5228787452803	(FXIII activity)	   1.08	[1-1.15] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	6p25.1	6	6317893	F13A1	F13A1			2162			rs3024321-A	rs3024321	0	3024321	intron	0	0.679	8E-142	141.0969100130081	(FXIII activity)	    .89	[0.82-0.96] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	9q34.2	9	133273813	ABO	ABO			28			rs505922-T	rs505922	0	505922	intron	0	0.68	5E-57	56.30102999566398	(vWF)	    .56	[0.49-0.63] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	9q34.2	9	133266942	ABO	ABO			28			rs643434-G	rs643434	0	643434	intron	0	0.656	1E-49	48.99999999999999	(vWF)	    .51	[0.44-0.58] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	13q34	13	113098517	F7/F10	MCF2L			23263			rs10665-A	rs10665	0	10665	ncRNA	0	0.878	2E-47	46.69897000433602	(FVII:C)	    .85	[0.73-0.96] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	13q34	13	113098850	F7/F10	MCF2L			23263			rs2181540-T	rs2181540	0	2181540	ncRNA	0	0.876	1E-46	45.99999999999999	(FVII:C)	    .83	[0.72-0.95] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	13q34	13	113118393	F7/F10	F7			2155			rs6041-G	rs6041	0	6041	intron	0	0.892	2E-45	44.69897000433601	(FVII:C)	    .88	[0.76-1] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	1q31.3	1	197101646	CFHR4	ASPM			259266			rs10922162-C	rs10922162	0	10922162	cds-synon	0	0.839	2E-30	29.69897000433602	(FXIIIA)	    .52	[0.43-0.61] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	1q31.3	1	197004053	CFHR4	CFHR5			81494			rs12116643-T	rs12116643	0	12116643	intron	0	0.84	5E-30	29.30102999566398	(FXIIIA)	    .52	[0.43-0.6] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	9q34.2	9	133278431	ABO	ABO - SURF6	28	6838		        3.22	       52.28	rs651007-C	rs651007	0	651007	Intergenic	1	0.81	2E-25	24.69897000433602	(FVIII)	    .46	[0.37-0.55] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	13q34	13	113139535	F7/F10	F10			2159			rs3211770-G	rs3211770	0	3211770	intron	0	0.879	3E-19	18.52287874528033	(FVII:C)	    .53	[0.42-0.65] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	1q31.3	1	197185891	CFHR4	ZBTB41			360023			rs7410943-A	rs7410943	0	7410943	intron	0	0.531	3E-19	18.52287874528033	(FXIIIB)	    .30	[0.23-0.37] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	1q31.3	1	196917640	CFHR4	CFHR4			10877			rs4915559-T	rs4915559	0	4915559	intron	0	0.759	7E-19	18.15490195998574	(FXIIIA)	    .34	[0.26-0.41] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	6p25.1	6	6337273	F13A1	MIR5683 - LY86-AS1	100847034	285780		      167.86	        9.19	rs11243081-C	rs11243081	0	11243081	Intergenic	1	0.676	5E-18	17.30102999566398	(FXIIIA)	    .30	[0.23-0.37] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	6p25.1	6	6341054	F13A1	MIR5683 - LY86-AS1	100847034	285780		      171.65	        5.41	rs17142067-A	rs17142067	0	17142067	Intergenic	1	0.67	1E-17	17	(FXIIIA)	    .30	[0.23-0.37] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	9q34.2	9	133256028	ABO	ABO			28			rs8176743-C	rs8176743	0	8176743	missense	0	0.939	2E-17	16.69897000433602	(vWF)	    .58	[0.45-0.72] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	6p25.1	6	6331703	F13A1	MIR5683 - LY86-AS1	100847034	285780		      162.29	       14.76	rs1318606-T	rs1318606	0	1318606	Intergenic	1	0.569	4E-17	16.39794000867203	(FXIIIA)	    .27	[0.21-0.34] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	13q34	13	113102226	F7/F10	MCF2L-AS1 - F7	100289410	2155		      133.59	        3.56	rs555212-G	rs555212	0	555212	Intergenic	1	0.768	1E-15	15	(FVII:C)	    .37	[0.28-0.46] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	9q32	9	114325784	ORM1	ORM1			5004			rs10982156-T	rs10982156	0	10982156	intron	0	0.939	2E-10	9.698970004336017	(FX)	    .46	[0.31-0.6] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	1q31.3	1	196727803	CFHR4	CFH			3075			rs1410996-G	rs1410996	0	1410996	intron	0	0.585	1E-9	8.999999999999998	(FXIIIA)	    .20	[0.14-0.27] unit increase	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	5p15.31	5	6324180	FLJ33360	FLJ33360			401172			rs12518614-A	rs12518614	0	12518614	intron	0	0.954	2E-9	8.698970004336019	(vWF)	    .46	[0.31-0.61] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	13q14.11	13	43196338	ENOX1	MOCS3P2 - ENOX1	100420520	55068		       16.33	       16.79	rs9533425-G	rs9533425	0	9533425	Intergenic	1	0.801	2E-9	8.698970004336019	(Fibrin lag time)	    .31	[0.21-0.41] unit decrease	Illumina [NR] (imputed)	N
03/20/2013	23381943	Williams FM	01/01/2013	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23381943 	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NR	1p21.3	1	94586920	F3	F3 - KATNBL1P2	2152	100130235		       45.06	       63.63	rs2022309-G	rs2022309	0	2022309	Intergenic	1	0.701	4E-8	7.397940008672037	(D-dimer)	    .24	[0.16-0.33] unit decrease	Illumina [NR] (imputed)	N
02/23/2013	23275298	Fox ER	12/28/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23275298	Genome-wide association study of cardiac structure and systolic function in African Americans: the Candidate Gene Association Resource (CARe) study.	Cardiac structure and function	6,765 African American individuals	2,468 African American individuals, 12,612 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~2.5 Million] (imputed)	N
03/22/2013	23269536	Sun J	12/27/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23269536	Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.	Prostate-specific antigen levels	1,999 Chinese ancestry males	1,496 Chinese ancestry males	1q32.1	1	205669094	SLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569	SLC45A3			85414			rs12409639-A	rs12409639	0	12409639	intron	0	0.11	2E-19	18.69897000433602		    .20	[NR] % higher levels	Illumina [>709,211] (imputed)	N
03/22/2013	23269536	Sun J	12/27/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23269536	Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.	Prostate-specific antigen levels	1,999 Chinese ancestry males	1,496 Chinese ancestry males	10q11.23	10	46046326	MSMB	MSMB			4477			rs10993994-T	rs10993994	0	10993994	nearGene-5	0	0.50	5E-17	16.30102999566398		    .12	[NR] % higher levels	Illumina [>709,211] (imputed)	N
03/22/2013	23269536	Sun J	12/27/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23269536	Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.	Prostate-specific antigen levels	1,999 Chinese ancestry males	1,496 Chinese ancestry males	19q13.33	19	50861367	KLK3	KLK3 - KLK2	354	3817		         .60	       12.07	rs2735839-G	rs2735839	0	2735839	Intergenic	1	0.58	6E-37	36.22184874961636		    .19	[NR] % higher levels	Illumina [>709,211] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2p13.1	2	73981235	TET3, DGUOK	DGUOK-AS1			100874048			rs6705628-C	rs6705628	0	6705628	ncRNA	0	0.78	7E-17	16.15490195998574		   1.33	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2p13.1	2	73975451	TET3, DGUOK	DGUOK-AS1			100874048			rs4852324-T	rs4852324	0	4852324	intron	0	0.76	6E-14	13.22184874961636		   1.27	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	3q13.33	3	119542097	CD80	CD80			941			rs6804441-A	rs6804441	0	6804441	intron	0	0.61	3E-16	15.52287874528034		   1.27	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	10q21.2	10	62045858	ARID5B, RTKN2	ARID5B			84159			rs4948496-C	rs4948496	0	4948496	intron	0	0.63	5E-11	10.30102999566398		   1.18	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12p13.2	12	12620587	CREBL2	CREBL2			1389			rs12822507-A	rs12822507	0	12822507	intron	0	0.57	2E-8	7.698970004336018		   1.16	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12p13.1	12	12681960	GPR19	GPR19			2842			rs10845606-C	rs10845606	0	10845606	intron	0	0.71	4E-17	16.39794000867203		   1.27	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12p13.1	12	12717761	CDKN1B	CDKN1B;LOC101929220			1027;101929220			rs34330-C	rs34330	0	34330	UTR-5;missense	0	0.52	5E-12	11.30102999566398		   1.19	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12q23.2	12	101928157	DRAM1	DRAM1 - RPL9P24	55332	100271045		        4.53	        8.06	rs4622329-A	rs4622329	0	4622329	Intergenic	1	0.56	9E-12	11.04575749056067		   1.19	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	1q25.3	1	183647749	APOBEC4	RGL1;APOBEC4			23179;403314			rs10911390-T	rs10911390	0	10911390	intron;missense	0	0.06	6E-6	5.221848749616356		   1.13	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	3p22.2	3	38802156	SCN10A	SCN10A - SCN11A	6336	11280		        8.15	       43.61	rs11717455-T	rs11717455	0	11717455	Intergenic	1	0.93	7E-6	5.154901959985742		   1.41	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6q15	6	90305320	BACH2	BACH2 - MIR4464	60468	100616109		        8.41	        7.42	rs12529935-C	rs12529935	0	12529935	Intergenic	1	0.91	9E-6	5.045757490560675		   1.35	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	10q22.1	10	71356185	SLC29A3	SLC29A3			55315			rs2252996-A	rs2252996	0	2252996	missense	0	0.68	3E-6	5.522878745280337		   1.22	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	16p11.2	16	29871169	SEZ6L2	SEZ6L2			26470			rs12917712-T	rs12917712	0	12917712	UTR-3	0	0.29	7E-6	5.154901959985742		   1.07	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	19p13.11	19	17309480	DDA1	DDA1			79016			rs2303745-A	rs2303745	0	2303745	nearGene-5	0	0.39	1E-6	5.999999999999999		   1.07	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	11p13	11	35071523	CD44	MIR1343 - CD44	100616437	960		      129.60	       67.35	rs2785197-C	rs2785197	0	2785197	Intergenic	1	0.74	2E-7	6.698970004336019		   1.23	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	4q24	4	101794731	BANK1	BANK1			55024			rs4522865-A	rs4522865	0	4522865	intron	0	0.54	5E-6	5.301029995663981		   1.35	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	8p23.1	8	11486171	BLK	FAM167A - BLK	83648	640		       19.40	        7.84	rs2254546-G	rs2254546	0	2254546	Intergenic	1	0.73	2E-13	12.69897000433602		   1.49	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.32	6	32606214	HLA-DRB1	TRNAI25			100189401			rs9270984-T	rs9270984	0	9270984		0	0.18	5E-24	23.30102999566398		   1.73	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	7p12.2	7	50273756	IKZF1	C7orf72 - IKZF1	100130988	10320		      114.50	       31.03	rs10276619-G	rs10276619	0	10276619	Intergenic	1	0.63	6E-6	5.221848749616356		   1.18	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	7q32.1	7	128928906	IRF5	KCP - IRF5	375616	3663		       18.19	        9.03	rs729302-A	rs729302	0	729302	Intergenic	1	0.66	1E-9	8.999999999999998		   1.47	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6q21	6	106135045	PRDM1, ATG5	PRDM1 - ATG5	639	9474		       25.11	       49.43	rs742108-T	rs742108	0	742108	Intergenic	1	0.34	4E-6	5.397940008672037		   1.24	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	0.34	1E-21	21		   1.63	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6q23.3	6	137874929	TNFAIP3	TNFAIP3			7128			rs2230926-G	rs2230926	0	2230926	missense	0	0.02	1E-13	13		   2.71	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	1q25.1	1	173222336	TNFSF4	TNFSF4 - RPL26P11	7292	730070		       15.00	      123.52	rs2205960-T	rs2205960	0	2205960	Intergenic	1	0.25	3E-12	11.52287874528034		   1.36	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	5q33.1	5	151078585	TNIP1	TNIP1			10318			rs10036748-T	rs10036748	0	10036748	intron	0	0.74	3E-6	5.522878745280337		   1.25	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	22q11.21	22	21585386	UBE2L3	UBE2L3			7332			rs5754217-T	rs5754217	0	5754217	intron	0	0.56	5E-6	5.301029995663981		   1.12	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	6p21.31	6	34855410	UHRF1BP1	UHRF1BP1			54887			rs3734266-G	rs3734266	0	3734266	intron	0	0.13	1E-12	12		   1.56	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	16p13.13	16	11096031	CLEC16A	CLEC16A			23274			rs12599402-A	rs12599402	0	12599402	intron	0	0.56	5E-7	6.30102999566398		   1.28	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	16p11.2	16	31287618	ITGAM	ITGAM			3684			rs9937837-G	rs9937837	0	9937837	intron	0	0.02	7E-6	5.154901959985742		   1.86	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	10q11.23	10	48834906	WDFY4	WDFY4			57705			rs877819-A	rs877819	0	877819	intron	0	0.18	8E-9	8.096910013008056		   1.46	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	11q24.3	11	128441164	ETS1	KIRREL3-AS3 - ETS1	283165	2113		     1435.11	       17.60	rs6590330-A	rs6590330	0	6590330	Intergenic	1	0.35	3E-8	7.522878745280337		   1.51	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12q24.33	12	128816149	SLC15A4	SLC15A4			121260			rs1385374-A	rs1385374	0	1385374	intron	0	0.17	8E-8	7.096910013008055		   1.41	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	13q14.11	13	40983974	ELF1	ELF1			1997			rs7329174-G	rs7329174	0	7329174	intron	0	0.21	6E-6	5.221848749616356		   1.45	 	Illumina [2,100,739] (imputed)	N
02/21/2013	23273568	Yang W	12/27/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23273568	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2p22.3	2	33476823	RASGRP3	RASGRP3			25780			rs13385731-A	rs13385731	0	13385731	intron	0	0.83	4E-6	5.397940008672037		   1.39	 	Illumina [2,100,739] (imputed)	N
04/05/2013	23300701	Jiao S	12/26/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23300701 	Genome-wide search for gene-gene interactions in colorectal cancer.	Colorectal cancer	8,380 European ancestry cases, 10,558 European ancestry controls	2,527 European ancestry cases, 2,628 European ancestry controls	6q25.3	6	158014540	Intergenic	SYNJ2			8871			rs9365723-?	rs9365723	0	9365723	intron	0	0.57	4E-6	5.397940008672037	(rs6687758, known)	   1.27	[1.15-1.41] 	Illumina [2,011,668]	N
04/05/2013	23300701	Jiao S	12/26/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23300701 	Genome-wide search for gene-gene interactions in colorectal cancer.	Colorectal cancer	8,380 European ancestry cases, 10,558 European ancestry controls	2,527 European ancestry cases, 2,628 European ancestry controls	7p15.3	7	25094230	Intergenic	SNRPCP19 - CYCS	100310849	54205		      187.63	       24.42	rs39453-?	rs39453	0	39453	Intergenic	1	0.63	2E-6	5.698970004336018	(rs6687758, known)	   1.28	[1.16-1.43] 	Illumina [2,011,668]	N
04/05/2013	23300701	Jiao S	12/26/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23300701 	Genome-wide search for gene-gene interactions in colorectal cancer.	Colorectal cancer	8,380 European ancestry cases, 10,558 European ancestry controls	2,527 European ancestry cases, 2,628 European ancestry controls	5q21.3	5	109613236	Intergenic	KRT18P42 - MAN2A1	391819	4124		       23.58	       76.13	rs367615-?	rs367615	0	367615	Intergenic	1	0.73	4E-8	7.397940008672037	(rs10795668)	   1.35	[1.20-1.49] 	Illumina [2,011,668]	N
04/05/2013	23300701	Jiao S	12/26/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23300701 	Genome-wide search for gene-gene interactions in colorectal cancer.	Colorectal cancer	8,380 European ancestry cases, 10,558 European ancestry controls	2,527 European ancestry cases, 2,628 European ancestry controls	4q13.2	4	66491736	Intergenic	RPS23P3 - CENPC	100271091	1060		       60.22	      980.54	rs17730929-?	rs17730929	0	17730929	Intergenic	1	0.90	3E-6	5.522878745280337	(rs7136702, known)	   1.47	[1.25-1.72] 	Illumina [2,011,668]	N
04/05/2013	23300701	Jiao S	12/26/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23300701 	Genome-wide search for gene-gene interactions in colorectal cancer.	Colorectal cancer	8,380 European ancestry cases, 10,558 European ancestry controls	2,527 European ancestry cases, 2,628 European ancestry controls	9q22.32	9	93868852	CRAC1	MIR4291 - BARX1	100422927	56033		       49.43	       82.78	rs10114408-?	rs10114408	0	10114408	Intergenic	1	0.76	3E-6	5.522878745280337	(rs4779584, known)	   1.37	[1.20-1.56] 	Illumina [2,011,668]	N
04/05/2013	23300701	Jiao S	12/26/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23300701 	Genome-wide search for gene-gene interactions in colorectal cancer.	Colorectal cancer	8,380 European ancestry cases, 10,558 European ancestry controls	2,527 European ancestry cases, 2,628 European ancestry controls	3p24.3	3	23101556	Intergenic	SALL4P5 - RPL24P7	100130785	100270963		      109.98	       32.76	rs4591517-?	rs4591517	0	4591517	Intergenic	1	0.28	3E-6	5.522878745280337	(rs4925386, known)	   1.06	[0.88-1.29] 	Illumina [2,011,668]	N
04/05/2013	23300701	Jiao S	12/26/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23300701 	Genome-wide search for gene-gene interactions in colorectal cancer.	Colorectal cancer	8,380 European ancestry cases, 10,558 European ancestry controls	2,527 European ancestry cases, 2,628 European ancestry controls	12q21.1	12	72020783	Intergenic	TPH2			121278			rs10879357-?	rs10879357	0	10879357	intron	0	0.62	3E-6	5.522878745280337	(rs1571218, novel)	   1.25	[1.14-1.39] 	Illumina [2,011,668]	N
02/21/2013	23267103	Desch KC	12/24/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23267103 	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NR	9q34.2	9	133261703	ABO, LOC653163, ADAMTS13, OBP2B, OBP2A, C9orf96, LOC286310, SURF6, SURF5	ABO			28			rs687289-T	rs687289	0	687289	intron	0	0.751	1E-128	128		    .33	[0.30-0.36] lU/dL increase	Illumina [723,716]	N
02/21/2013	23267103	Desch KC	12/24/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23267103 	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NR	9q34.2	9	133260148	ABO, LOC653163, ADAMTS13, OBP2B, OBP2A, C9orf96, LOC286310, SURF6, SURF5	ABO			28			rs8176704-A	rs8176704	0	8176704	intron	0	NR	4E-34	33.39794000867203	(Conditioned on rs687289)	    .34	[NR] lU/dL decrease	Illumina [723,716]	N
02/21/2013	23267103	Desch KC	12/24/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23267103 	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NR	12p13.31	12	6044368	VWF	VWF			7450			rs1063856-A	rs1063856	0	1063856	missense	0	0.395	5E-16	15.30102999566398		    .12	[0.091-0.149] lU/dL decrease	Illumina [723,716]	N
02/21/2013	23267103	Desch KC	12/24/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23267103 	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NR	9q34.2[rs687289]; 9q34.2[rs8176704]			ABO	 - 						3-SNP Haplotype	rs687289, rs8176704, rs8176749					0.720	2E-138		(rs687289-G, rs8176704-G, rs8176749-C)	    .34	[NR] lU/dL decrease	Illumina [723,716]	N
02/21/2013	23267103	Desch KC	12/24/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23267103 	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NR	9q34.2[rs687289]; 9q34.2[rs8176704]			ABO	 - 						3-SNP Haplotype	rs687289, rs8176704, rs8176749					0.155	4E-98		(rs687289-A, rs8176704-G, rs8176749-C)	    .36	[NR] lU/dL increase	Illumina [723,716]	N
02/21/2013	23267103	Desch KC	12/24/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23267103 	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NR	9q34.2[rs687289]; 9q34.2[rs8176704]			ABO	 - 						3-SNP Haplotype	rs687289, rs8176704, rs8176749					0.0722	7E-50		(rs687289-A, rs8176704-G, rs8176749-T)	    .36	[NR] lU/dL increase	Illumina [723,716]	N
02/21/2013	23267103	Desch KC	12/24/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/23267103 	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NR	12p13.31[rs1063856]; 12p13.31[rs1063857]			VWF	 - 						2-SNP Haplotype	rs1063856, rs1063857					NR	6E-7			NR	NR	Illumina [723,716]	N
03/05/2013	23263487	Jia WH	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263487	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	12p13.32	12	4259186	CCND2, PARP11, FGF23, FGF6, C12orf5, RAD51AP1	RPL18P9 - CCND2	100129645	894		      139.23	       14.55	rs10774214-T	rs10774214	0	10774214	Intergenic	1	0.379	3E-8	7.522878745280337		   1.09	[1.06-1.13] 	Illumina & Affymetrix (1,636,380) imputed	N
03/05/2013	23263487	Jia WH	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263487	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	5q31.1	5	135163402	PITX1, CATSPER3, PCBD2, MIR4461 and H2AFY	C5orf66			100996485			rs647161-A	rs647161	0	647161	intron	0	0.667	1E-10	10		   1.11	[1.08-1.15] 	Illumina & Affymetrix (1,636,380) imputed	N
03/05/2013	23263487	Jia WH	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263487	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	20p12.3	20	7831703	HAO1, PLCB1	SRSF10P2			171472			rs2423279-C	rs2423279	0	2423279		0	0.252	7E-9	8.154901959985743		   1.10	[1.06-1.14] 	Illumina & Affymetrix (1,636,380) imputed	N
03/05/2013	23263487	Jia WH	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263487	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	12p13.32	12	4259186	CCND2, PARP11, FGF23, FGF6, C12orf5, RAD51AP1	RPL18P9 - CCND2	100129645	894		      139.23	       14.55	rs10774214-T	rs10774214	0	10774214	Intergenic	1	0.352	5E-10	9.301029995663981	(East Asian)	   1.17	[1.11-1.23] 	Illumina & Affymetrix (1,636,380) imputed	N
03/05/2013	23263487	Jia WH	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263487	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	5q31.1	5	135163402	PITX1, CATSPER3, PCBD2, MIR4461 and H2AFY	C5orf66			100996485			rs647161-A	rs647161	0	647161	intron	0	0.313	4E-10	9.397940008672037	(East Asian)	   1.17	[1.11-1.22] 	Illumina & Affymetrix (1,636,380) imputed	N
03/05/2013	23263487	Jia WH	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263487	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	20p12.3	20	7831703	HAO1, PLCB1	SRSF10P2			171472			rs2423279-C	rs2423279	0	2423279		0	0.302	2E-7	6.698970004336019	(East Asian)	   1.14	[1.08-1.19] 	Illumina & Affymetrix (1,636,380) imputed	N
03/05/2013	23263487	Jia WH	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263487	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	10q25.3	10	116727589	HSPA12A	HSPA12A			259217			rs1665650-T	rs1665650	0	1665650	intron	0	0.315	9E-7	6.045757490560675	(East Asian)	   1.13	[1.08-1.19] 	Illumina & Affymetrix (1,636,380) imputed	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	4p16.1	4	9945032	SLC2A9	SLC2A9			56606			rs4475146-A	rs4475146	0	4475146	intron	0	0.2237	4E-26	25.39794000867203		    .47	[0.38-0.55] unit decrease	Affymetrix, Illumina [2,538,056] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	4q22.1	4	88117930	ABCG2	ABCG2			9429			rs1481012-A	rs1481012	0	1481012	intron	0	0.8903	2E-32	31.69897000433602		    .55	[0.46-0.64] unit decrease	Affymetrix, Illumina [2,538,056] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	9q31.1	9	104561919	NR	OR13C3 - OR13C8	138803	138802		       25.11	        7.25	rs13287980-A	rs13287980	0	13287980	Intergenic	1	0.1271	1E-6	5.999999999999999		    .24	[0.14-0.33] unit increase	Affymetrix, Illumina [2,538,056] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	10q26.13	10	121521144	NR	FGFR2			2263			rs3135753-T	rs3135753	0	3135753	intron	0	0.9897	9E-7	6.045757490560675		   1.07	[0.65-1.49] unit decrease	Affymetrix, Illumina [2,538,056] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	18q21.32	18	60708701	NR	CTBP2P3 - HMGN1P31	220147	728111		       44.33	       85.91	rs2168303-A	rs2168303	0	2168303	Intergenic	1	0.9953	2E-7	6.698970004336019		   1.94	[1.21-2.67] unit decrease	Affymetrix, Illumina [2,538,056] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	4q35.1	4	183356978	NR	CLDN24 - CDKN2AIP	100132463	55602		       34.55	       87.66	rs17074636-T	rs17074636	0	17074636	Intergenic	1	0.9862	7E-7	6.154901959985743		    .71	[0.43-0.99] unit decrease	Affymetrix, Illumina [2,538,056] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	4q22.1	4	88131171	ABCG2	ABCG2			9429			rs2231142-T	rs2231142	0	2231142	missense	0	0.11	1E-134	134		    .22	[0.20-0.23] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p22.2	6	25821388	SLC17A1, SLC17A3	SLC17A1			6568			rs1165151-T	rs1165151	0	1165151	intron	0	0.47	7E-70	69.15490195998574		    .09	[0.081-0.101] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.41	1E-44	44		    .07	[0.063-0.084] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q13.1	11	64566642	SLC22A11	SLC22A11			55867			rs2078267-T	rs2078267	0	2078267	intron	0	0.51	9E-38	37.04575749056067		    .07	[0.061-0.085] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	1q21.1	1	145711327	PDZK1	TRNAN5			100189005			rs1471633-A	rs1471633	0	1471633		0	0.46	1E-29	28.99999999999999		    .06	[0.049-0.069] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	10q21.2	10	59709780	SLC16A9	SLC16A9			220963			rs1171614-T	rs1171614	0	1171614	UTR-5	0	0.22	2E-28	27.69897000433602		    .08	[0.065-0.093] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q13.3	12	57450266	INHBC, INHBE	INHBC			3626			rs3741414-T	rs3741414	0	3741414	UTR-3	0	0.24	2E-25	24.69897000433602		    .07	[0.058-0.085] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p24.3	6	7101851	RREB1	BTF3P7 - RREB1	652960	6239		      306.35	        5.75	rs675209-T	rs675209	0	675209	Intergenic	1	0.27	1E-23	23		    .06	[0.049-0.073] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	1q22	1	155179017	TRIM46, PKLR	TRIM46			80128			rs11264341-T	rs11264341	0	11264341	intron	0	0.43	6E-19	18.22184874961635		    .05	[0.038-0.062] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	8q21.11	8	75566533	HNF4G	HNF4G			3174			rs2941484-T	rs2941484	0	2941484	UTR-3	0	0.44	4E-17	16.39794000867203		    .04	[0.034-0.054] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	17q22	17	55287427	HLF	HLF			3131			rs7224610-A	rs7224610	0	7224610	intron	0	0.58	5E-17	16.30102999566398		    .04	[0.032-0.052] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	10q11.23	10	50886333	A1CF, ASAH2	A1CF			29974			rs10821905-A	rs10821905	0	10821905	nearGene-5	0	0.18	7E-17	16.15490195998574		    .06	[0.043-0.071] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	3p21.1	3	53066198	SFMBT1, MUSTN1	SERBP1P3 - RFT1	553148	91869		        1.11	       19.44	rs6770152-T	rs6770152	0	6770152	Intergenic	1	0.58	3E-16	15.52287874528034		    .04	[0.034-0.054] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p21.1	6	43836834	VEGFA	TRNAI25			100189401			rs729761-T	rs729761	0	729761		0	0.30	8E-16	15.09691001300805		    .05	[0.036-0.058] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	15q26.3	15	98727906	IGF1R	IGF1R			3480			rs6598541-A	rs6598541	0	6598541	intron	0	0.36	5E-15	14.30102999566398		    .04	[0.031-0.055] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	15q24.2	15	75866642	UBE2Q2, NRG4	UBE2Q2			92912			rs1394125-A	rs1394125	0	1394125	intron	0	0.34	3E-13	12.52287874528034		    .04	[0.031-0.055] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q13.1	11	65793149	OVOL1, LTBP3	OVOL1			5017			rs642803-T	rs642803	0	642803	intron	0	0.46	3E-13	12.52287874528034		    .04	[0.026-0.045] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	7q11.23	7	73442719	BAZ1B, MLXIPL	BAZ1B			9031			rs1178977-A	rs1178977	0	1178977	intron	0	0.81	1E-12	12		    .05	[0.034-0.06] unit increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q24.12	12	111569952	ATXN2, PTPN11	ATXN2			6311			rs653178-T	rs653178	0	653178	intron	0	0.51	7E-12	11.15490195998574		    .04	[0.025-0.045] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	5q13.2	5	73135655	TMEM171	TMEM171 - TMEM174	134285	134288		        3.72	       32.60	rs17632159-C	rs17632159	0	17632159	Intergenic	1	0.31	4E-11	10.39794000867204		    .04	[0.027-0.051] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q13.1	11	64710591	NRXN2, SLC22A12	NRXN2			9379			rs478607-A	rs478607	0	478607	intron	0	0.84	4E-11	10.39794000867204		    .05	[0.033-0.061] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2q14.2	2	120548864	INHBB	LINC01101 - GLI2	84931	2736		       82.52	      248.43	rs17050272-A	rs17050272	0	17050272	Intergenic	1	0.43	2E-10	9.698970004336017		    .04	[0.023-0.047] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	16q22.1	16	69529987	NFAT5	CYB5B - MIR1538	80777	100302119		       63.72	       35.82	rs7193778-T	rs7193778	0	7193778	Intergenic	1	0.86	8E-10	9.096910013008054		    .05	[0.030-0.062] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	16q23.2	16	79701090	MAF	MAF - DYNLRB2	4094	83657		      100.37	      839.87	rs7188445-A	rs7188445	0	7188445	Intergenic	1	0.33	2E-9	8.698970004336019		    .03	[0.022-0.042] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q13.13	12	51857488	ACVR1B, ACVRL1	FIGNL2 - ANKRD33	401720	341405		        8.91	       30.52	rs7976059-T	rs7976059	0	7976059	Intergenic	1	0.35	2E-9	8.698970004336019	(network)	    .03	[0.022-0.042] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	7q36.1	7	151708919	PRKAG2	PRKAG2			51422			rs10480300-T	rs10480300	0	10480300	intron	0	0.28	4E-9	8.397940008672036		    .04	[0.023-0.047] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	17q23.2	17	61388336	BCAS3, C17orf82	BCAS3			54828			rs2079742-T	rs2079742	0	2079742	intron	0	0.85	1E-8	8		    .04	[0.027-0.059] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	8p21.2	8	23919493	STC1	STC1 - ADAM28	6781	10863		       64.69	      374.55	rs17786744-A	rs17786744	0	17786744	Intergenic	1	0.58	1E-8	8		    .03	[0.019-0.039] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2q23.1	2	147958859	ORC4L, ACVR2A	ORC4			5000			rs2307394-T	rs2307394	0	2307394	missense	0	0.68	2E-8	7.698970004336018		    .03	[0.019-0.039] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q24.31	12	122141445	B3GNT4	MLXIP			22877			rs7953704-A	rs7953704	0	7953704	cds-synon	0	0.47	3E-8	7.522878745280337	(network)	    .03	[0.019-0.039] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q24.31	12	120979185	HNF1A	HNF1A			6927			rs2244608-A	rs2244608	0	2244608	intron	0	0.68	8E-8	7.096910013008055	(women)	    .04	[0.023-0.049] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	1q21.3	1	150977586	ARNT	CERS2 - ANXA9	29956	8416		        2.58	        4.44	rs4970988-A	rs4970988	0	4970988	Intergenic	1	0.36	1E-7	7	(network)	    .03	[0.018-0.038] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	19p13.2	19	7199792	INSR	INSR			3643			rs1035942-A	rs1035942	0	1035942	intron	0	0.27	1E-7	7		    .03	[0.017-0.041] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	17q25.1	17	76287588	QRICH2, PRPSAP1	QRICH2			84074			rs164009-A	rs164009	0	164009	intron	0	0.61	2E-7	6.698970004336019		    .03	[0.018-0.038] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	15q24.1	15	72790025	ADPGK	ADPGK-AS1			100287559			rs4777542-T	rs4777542	0	4777542	intron	0	0.32	2E-7	6.698970004336019		    .03	[0.017-0.041] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	9p21.1	9	33180364	B4GALT1	B4GALT1-AS1			101929639			rs10813960-T	rs10813960	0	10813960	nearGene-3	0	0.29	4E-7	6.397940008672037		    .03	[0.018-0.042] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6q22.1	6	115989124	FRK	FRK			2444			rs1933737-T	rs1933737	0	1933737	intron	0	0.69	7E-7	6.154901959985743	(women)	    .03	[0.02-0.047] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	4q21.21	4	80248758	FGF5	PRDM8 - FGF5	56978	2250		       44.43	       17.83	rs11099098-T	rs11099098	0	11099098	Intergenic	1	0.29	7E-7	6.154901959985743		    .03	[0.017-0.041] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	6p21.1	6	43304450	SLC22A7	SLC22A7			10864			rs4149178-A	rs4149178	0	4149178	intron	0	0.84	1E-6	5.999999999999999	(candidate)	    .03	[0.02-0.048] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	18q21.32	18	60205756	MC4R	RPS3AP49 - MC4R	400652	4160		       55.35	      165.58	rs12955983-A	rs12955983	0	12955983	Intergenic	1	0.73	2E-6	5.698970004336018	(women)	    .04	[0.022-0.051] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q23.3	11	119364694	USP2	USP2			9099			rs2195525-T	rs2195525	0	2195525	intron	0	0.52	2E-6	5.698970004336018		    .03	[0.015-0.035] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	5q11.2	5	56515265	ANKRD55	LOC101928448			101928448			rs456867-T	rs456867	0	456867	intron	0	0.17	3E-6	5.522878745280337	(women)	    .04	[0.022-0.054] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2q33.2	2	202472278	BMPR2	BMPR2			659			rs12468226-A	rs12468226	0	12468226	intron	0	0.88	3E-6	5.522878745280337	(network)	    .04	[0.023-0.055] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	5p13.1	5	39902263	DAB2	INTS6P1 - LINC00603	285634	102467077		      180.75	      150.03	rs11954519-A	rs11954519	0	11954519	Intergenic	1	0.73	4E-6	5.397940008672037	(women)	    .03	[0.019-0.047] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q13.11	12	47779569	HDAC7	SLC48A1			55652			rs4760636-T	rs4760636	0	4760636	intron	0	0.23	6E-6	5.221848749616356	(network)	    .03	[0.015-0.039] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	13q21.33	13	71771373	DACH1	DACH1			1602			rs584480-T	rs584480	0	584480	intron	0	0.40	9E-6	5.045757490560675		    .02	[0.013-0.033] mg/dl decrease	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
03/15/2013	23263486	Kottgen A	12/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263486	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	4p16.1	4	9942428	SLC2A9	SLC2A9			56606			rs12498742-A	rs12498742	0	12498742	intron	0	0.77	1E-700	700		    .37	[0.36-0.38] mg/dl increase	Affymetrix, Illumina, Perlegen [2,450,547] (imputed)	N
08/21/2013	23263444	Frazier-Wood AC	12/22/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263444	Genetic variants associated with VLDL, LDL and HDL particle size differ with race/ethnicity.	Lipoprotein diameter	817 European ancestry individuals	2,430 European ancestry individuals, 1,594 African American individuals, 1,422 Hispanic individuals, 758 Chinese ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [2,543,887] (Imputed)	N
03/21/2013	23263445	Lawrance-Owen AJ	12/22/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263445	Genetic association suggests that SMOC1 mediates between prenatal sex hormones and digit ratio.	Digit length ratio	979 European ancestry individuals	(see Medland, 2010)	14q24.2	14	69880631	SMOC	SMOC1			64093			rs11158820-?	rs11158820	0	11158820	intron	0	NR	2E-11	10.69897000433602		NR	NR	Illumina [642,758]	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	8q24.21	8	127401060	MYC	CCAT2;LOC101930033			101805488;101930033			rs6983267-G	rs6983267	0	6983267	ncRNA;intron	0	0.5	1E-11	11		   1.13	[1.09-1.18] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	11q23.1	11	111300984	Intergenic	COLCA2;COLCA1			120376;399948			rs3802842-?	rs3802842	0	3802842	intron;nearGene-5	0	0.29	4E-7	6.397940008672037		   1.11	[1.06-1.15] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	15q13.3	15	32702555	CRAC1, HMPS, GREM1	SCG5 - GREM1	6447	26585		        5.46	       15.42	rs4779584-?	rs4779584	0	4779584	Intergenic	1	0.18	5E-7	6.30102999566398		   1.12	[1.08-1.19] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	18q21.1	18	48927093	SMAD7	SMAD7			4092			rs4939827-?	rs4939827	0	4939827	intron	0	0.52	2E-10	9.698970004336017		   1.12	[1.09-1.16] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	20p12.3	20	6718948	BMP2	CASC20 - BMP2	101929244	650		      190.49	       49.15	rs4813802-G	rs4813802	0	4813802	Intergenic	1	0.34	7E-6	5.154901959985742		   1.10	[1.05-1.14] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	2q32.3	2	191722478	NABP1	NABP1 - SDPR	64859	8436		       33.96	      111.83	rs11903757-C	rs11903757	0	11903757	Intergenic	1	0.16	4E-8	7.397940008672037		   1.16	[1.10-1.22] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	1q25.3	1	183112059	LAMC1	LAMC1			3915			rs10911251-A	rs10911251	0	10911251	intron	0	0.57	9E-8	7.045757490560674		   1.09	[1.06-1.13] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	12p13.32	12	4279105	CCND2	CCND2			894			rs3217810-T	rs3217810	0	3217810	intron	0	0.16	6E-8	7.221848749616355		   1.20	[1.12-1.28] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	12p13.32	12	4296223	CCND2	CCND2			894			rs3217901-G	rs3217901	0	3217901	intron	0	0.41	3E-7	6.522878745280337		   1.10	[1.06-1.14] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	12q24.21	12	114678547	TBX3	TBX3			6926			rs59336-T	rs59336	0	59336	intron	0	0.48	4E-7	6.397940008672037		   1.09	[1.06-1.13] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	1q23.3	1	162851501	C1orf110	C1orf110			339512			rs1912453-?	rs1912453	0	1912453	UTR-3	0	0.41	9E-6	5.045757490560675		   1.07	[1.04-1.11] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	4q22.2	4	93965880	Intergenic	ATOH1 - HMGB3P15	474	644429		      135.89	      230.06	rs13130787-?	rs13130787	0	13130787	Intergenic	1	0.43	3E-7	6.522878745280337		   1.09	[1.06-1.13] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	6q22.1	6	117498194	GOPC, DCBLD1	DCBLD1			285761			rs2057314-?	rs2057314	0	2057314	intron	0	0.50	3E-6	5.522878745280337		   1.08	[1.04-1.11] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	8q24.21	8	129807793	Intergenic	GSDMC - FAM49B	56169	51571		       20.91	       31.80	rs2128382-?	rs2128382	0	2128382	Intergenic	1	0.82	8E-6	5.096910013008055		   1.11	[1.06-1.16] 	Illumina & Affymetrix [2,708,280] imputed	N
02/19/2013	23266556	Peters U	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266556	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, and 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, up to 2,098 East Asian ancestry colorectal tumor cases, 909 European ancestry controls, up to 5,749 East Asian ancestry controls	14q23.1	14	58722643	Intergenic	DACT1 - RPL31P4	51339	729646		       74.32	       71.99	rs17094983-?	rs17094983	0	17094983	Intergenic	1	0.13	3E-6	5.522878745280337		   1.13	[1.08-1.20] 	Illumina & Affymetrix [2,708,280] imputed	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		1p21.3	1	98920737	PAP2D, SNX7	LPPR5			163404			rs1571500-?	rs1571500	0	1571500	intron	0	NR	2E-6	5.698970004336018	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		2q24.3	2	166320849	SCN9A	SCN9A			6335			rs4438497-?	rs4438497	0	4438497	intron	0	NR	7E-6	5.154901959985742	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		3q13.2	3	113276227	BOC	BOC			91653			rs775227-?	rs775227	0	775227	intron	0	NR	2E-6	5.698970004336018	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		3q13.2	3	113571621	SIDT1	SIDT1			54847			rs13092825-?	rs13092825	0	13092825	intron	0	NR	2E-6	5.698970004336018	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		4p14	4	40971510	APBB2	APBB2			323			rs4466078-?	rs4466078	0	4466078	intron	0	NR	8E-6	5.096910013008055	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		5q11.2	5	51632976	ISL1	HMGB1P47 - KATNBL1P4	100873897	100128982		      222.77	      297.83	rs4865673-?	rs4865673	0	4865673	Intergenic	1	NR	9E-6	5.045757490560675	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		6q23.2	6	134398929	LOC442261	LOC102723463			102723463			rs9402592-?	rs9402592	0	9402592	intron	0	NR	3E-6	5.522878745280337	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		6q27	6	166763934	RPS6KA2	RPS6KA2			6196			rs635808-?	rs635808	0	635808	intron	0	NR	1E-7	7	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		7q21.13	7	89431419	ZNF804B	C7orf62 - STEAP2-AS1	219557	100874100		      635.70	      450.93	rs6973392-?	rs6973392	0	6973392	Intergenic	1	NR	7E-6	5.154901959985742	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		8p21.1	8	27559284	EPHX2, PTK2B	EPHX2 - GULOP	2053	2989		       14.36	       18.33	rs17057381-?	rs17057381	0	17057381	Intergenic	1	NR	4E-7	6.397940008672037	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		8q21.3	8	89198871	LOC100129100	RNA5SP272 - RIPK2	100873525	8767		      802.32	      558.86	rs2046315-?	rs2046315	0	2046315	Intergenic	1	NR	3E-6	5.522878745280337	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		8p21.3	8	20443926	LZTS1	RNA5SP257 - RNU3P2	100873511	26844		      153.64	      170.93	rs4922199-?	rs4922199	0	4922199	Intergenic	1	NR	8E-6	5.096910013008055	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		14q22.2	14	54409466	CDKN3, CNIH, GMFB, CGRRF1, BMP4	CDKN3			1033			rs4251631-?	rs4251631	0	4251631	intron	0	NR	2E-7	6.698970004336019	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		16q23.2	16	79397956	LOC729251	RNA5SP431 - MAF	100873681	4094		      133.38	      195.89	rs4888966-?	rs4888966	0	4888966	Intergenic	1	NR	5E-6	5.301029995663981	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		18p11.21	18	11282320	C18orf58	PIEZO2 - LINC01255	63895	101927433		      133.56	      207.74	rs7243066-?	rs7243066	0	7243066	Intergenic	1	NR	9E-6	5.045757490560675	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		18q11.2	18	27107360	CHST9	CHST9			83539			rs9961915-?	rs9961915	0	9961915	intron	0	NR	5E-6	5.301029995663981	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		19p12	19	22372052	LOC342994	RPL34P34 - ZNF98	342994	148198		        2.96	       19.05	rs1865075-?	rs1865075	0	1865075	Intergenic	1	NR	6E-6	5.221848749616356	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		19p12	19	22425572	ZNF98	ZNF98 - ZNF209P	148198	441843		        3.23	       38.35	rs10404998-?	rs10404998	0	10404998	Intergenic	1	NR	3E-6	5.522878745280337	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		20q13.33	20	63666449	RTEL1	RTEL1;RTEL1-TNFRSF6B			51750;100533107			rs6011002-?	rs6011002	0	6011002	intron;intron	0	NR	3E-6	5.522878745280337	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		21q21.3	21	29116979	C21orf7	MAP3K7CL			56911			rs2832191-?	rs2832191	0	2832191	intron	0	NR	5E-6	5.301029995663981	(Comparatively Younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		1q42.13	1	229150111	RHOU	ISCA1P2 - RAB4A	100288517	5867		      107.52	      120.95	rs9793739-?	rs9793739	0	9793739	Intergenic	1	NR	5E-7	6.30102999566398	(Comparatively Older)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		4q13.3	4	72551807	ADAMTS3	ADAMTS3			9508			rs1383934-?	rs1383934	0	1383934	intron	0	NR	2E-6	5.698970004336018	(Comparatively Older)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		7p21.1	7	20752375	ABCB5	ABCB5			340273			rs2108258-?	rs2108258	0	2108258	intron	0	NR	2E-6	5.698970004336018	(Comparatively Older)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		7q21.13	7	91286039	LOC644727, FZD1, HOXA10	FZD1 - NIPA2P1	8321	100132321		       17.22	       33.96	rs2888830-?	rs2888830	0	2888830	Intergenic	1	NR	7E-6	5.154901959985742	(Comparatively Older)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		10p14	10	10031581	LOC644495	HSP90AB7P - TCEB1P3	644495	644540		      307.08	      142.57	rs10905651-?	rs10905651	0	10905651	Intergenic	1	NR	8E-6	5.096910013008055	(Comparatively Older)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		12q21.31	12	80943679	LIN7A	MIR618 - ACSS3	693203	79611		        7.85	       78.70	rs1163656-?	rs1163656	0	1163656	Intergenic	1	NR	9E-6	5.045757490560675	(Comparatively Older)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		17q25.3	17	81715021	SLC25A10	SLC25A10			1468			rs3204270-?	rs3204270	0	3204270	cds-synon	0	NR	5E-6	5.301029995663981	(Comparatively Older)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		1q42.13	1	229150111	LOC648390, RHOU	ISCA1P2 - RAB4A	100288517	5867		      107.52	      120.95	rs9793739-?	rs9793739	0	9793739	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		3p24.1	3	30330561	RBMS3	RBMS3-AS2 - TGFBR2	100873978	7048		      687.63	      275.94	rs7634533-?	rs7634533	0	7634533	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		4q13.3	4	72551807	ADAMTS3	ADAMTS3			9508			rs1383934-?	rs1383934	0	1383934	intron	0	NR	3E-7	6.522878745280337		NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		7q21.13	7	91286039	LOC644727, FZD1, HOXA10	FZD1 - NIPA2P1	8321	100132321		       17.22	       33.96	rs2888830-?	rs2888830	0	2888830	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		8q23.1	8	106896781	ABRA	ABRA - HMGB1P46	137735	100419978		      126.54	      276.42	rs4269515-?	rs4269515	0	4269515	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		14q22.2	14	54409466	CDKN3, CNIH, GMFB, CGRRF1, BMP4	CDKN3			1033			rs4251631-?	rs4251631	0	4251631	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/26/2013	23259602	Wang X	12/21/2012	BMC Oral Health	http://www.ncbi.nlm.nih.gov/pubmed/23259602	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 comparatively younger European ancestry individuals, 5,960 comparatively older European ancestry individuals		14q22.2	14	54185761	ATP5C2	ATP5C1P1 - CDKN3	645560	1033		      193.74	      211.18	rs1953743-?	rs1953743	0	1953743	Intergenic	1	NR	2E-6	5.698970004336018	(Comparatively younger)	NR	NR	Illumina and Affymetrix [~ 1.4 Million] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	1p36.11	1	24946709	RUNX3	RUNX3			864			rs7551188-T	rs7551188	0	7551188	intron	0	NR	9E-6	5.045757490560675		   1.18	[1.10-1.28] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	4p14	4	38334202	TBC1D1	MRPS33P2 - LINC01258	359775	101928776		      327.10	       86.46	rs1487630-T	rs1487630	0	1487630	Intergenic	1	NR	1E-11	11		   1.33	[1.22-1.44] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	6p21.32	6	32713151	HLA-DQA2, HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DOB, PSMB9	TRNAI25			100189401			rs7765379-G	rs7765379	0	7765379		0	NR	9E-59	58.04575749056067		   1.93	[1.78-2.09] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	9p24.1	9	4985879	JAK2	JAK2			3717			rs2274471-A	rs2274471	0	2274471	intron	0	NR	5E-6	5.301029995663981		   1.27	[1.15-1.41] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	9q32	9	114783386	TNFSF15, LOC100129633, LOC645266, TNFSF8	C9orf91 - TNFSF15	203197	9966		      136.96	        1.25	rs6478106-T	rs6478106	0	6478106	Intergenic	1	NR	5E-46	45.30102999566397		   1.73	[1.60-1.86] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	13q14.11	13	40983974	ELF1, microRNA2276, SLC25A15, WBP4	ELF1			1997			rs7329174-G	rs7329174	0	7329174	intron	0	NR	8E-9	8.096910013008056		   1.27	[1.17-1.38] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	17q21.2	17	42355962	STAT3	STAT3			6774			rs9891119-A	rs9891119	0	9891119	intron	0	NR	2E-15	14.69897000433602		   1.37	[1.27-1.48] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	2p25.2	2	5523876	SOX11	LINC01249 - LINC01248	727982	102723818		      867.65	      110.27	rs11894081-T	rs11894081	0	11894081	Intergenic	1	0.55	4E-9	8.397940008672036		   1.22	[1.2-1.22] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	11q13.4	11	72959855	ATG16L2, FCHSD2	FCHSD2			9873			rs72981516-T	rs72981516	0	72981516	intron	0	0.12	4E-7	6.397940008672037		   1.28	[1.27-1.29] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	6p21.33	6	31174468	PSORS1C3	PSORS1C3			100130889			rs3094188-C	rs3094188	0	3094188	intron	0	0.280	7E-7	6.154901959985743		   1.61	[1.33-1.94] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23266558	Yamazaki K	12/21/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/23266558	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases and 3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases and up to 15,800 Japanese ancestry controls	6p21.32	6	32237333	PBX2, NOTCH4	TRNAI25			100189401			rs9267911-T	rs9267911	0	9267911		0	0.479	3E-7	6.522878745280337		   1.50	[1.29-1.76] 	Illumina [4,929,034] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	1p36.13	1	16980180	MFAP2	MFAP2			4237			rs2284746-?	rs2284746	0	2284746	intron	0	NR	2E-11	10.69897000433602	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	2q35	2	217818431	TNS1	TNS1			7145			rs2571445-?	rs2571445	0	2571445	missense	0	NR	8E-9	8.096910013008056	(FEV1, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	2q36.3	2	228646213	PID1	LOC101928765			101928765			rs1435867-?	rs1435867	0	1435867	intron	0	NR	2E-9	8.698970004336019	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	2q37.3	2	238955452	HDAC4	FLJ43879 - HDAC4	401039	9759		       29.18	       92.72	rs12477314-?	rs12477314	0	12477314	Intergenic	1	NR	2E-7	6.698970004336019	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	3p24.2	3	25479091	RARB	RARB			5915			rs1529672-?	rs1529672	0	1529672	intron	0	NR	7E-11	10.15490195998574	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	3q26.2	3	169582431	MECOM	MECOM			2122			rs1344555-?	rs1344555	0	1344555	intron	0	NR	4E-6	5.397940008672037	(FEV1, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	4q22.1	4	88948181	FAM13A	FAM13A			10144			rs2869967-?	rs2869967	0	2869967	intron	0	NR	5E-11	10.30102999566398	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	4q24	4	105886950	INTS12,  GSTCD,  NPNT	LOC101929558			101929558			rs17331332-?	rs17331332	0	17331332	intron	0	NR	1E-16	16	(FEV1, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	4q31.21	4	144564586	HHIP	GYPA - KRT18P51	2993	391703		      423.84	        7.65	rs1980057-?	rs1980057	0	1980057	Intergenic	1	NR	5E-18	17.30102999566398	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	5q32	5	148462790	HTR4	HTR4			3360			rs11168048-?	rs11168048	0	11168048	intron	0	NR	5E-17	16.30102999566398	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	5q33.3	5	157505368	ADAM19	ADAM19			8728			rs2277027-?	rs2277027	0	2277027	intron	0	NR	2E-11	10.69897000433602	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p21.33	6	31600692	NCR3	TRNAI25			100189401			rs2857595-?	rs2857595	0	2857595		0	NR	8E-8	7.096910013008055	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p21.32	6	32183666	AGER	AGER			177			rs2070600-?	rs2070600	0	2070600	missense	0	NR	1E-21	21	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6q21	6	108946847	ARMC2	ARMC2			84071			rs2798641-?	rs2798641	0	2798641	intron	0	NR	2E-7	6.698970004336019	(FEV1, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6q24.1	6	142429379	GPR126	GPR126			57211			rs3817928-?	rs3817928	0	3817928	intron	0	NR	3E-12	11.52287874528034	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	9q22.32	9	95468726	PTCH1	PTCH1;LOC100507346			5727;100507346			rs16909898-?	rs16909898	0	16909898	intron;ncRNA	0	NR	8E-12	11.09691001300806	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	10p13	10	12235993	CDC123	CDC123			8872			rs7068966-?	rs7068966	0	7068966	intron	0	NR	2E-11	10.69897000433602	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	10q22.3	10	76555466	C10orf11	C10orf11			83938			rs11001819-?	rs11001819	0	11001819	intron	0	NR	5E-8	7.30102999566398	(FEV1, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	12q13.3	12	57133500	LRP1	LRP1			4035			rs11172113-?	rs11172113	0	11172113	intron	0	NR	8E-6	5.096910013008055	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	12q23.1	12	95877650	CCDC38	CCDC38			120935			rs1036429-?	rs1036429	0	1036429	intron	0	NR	1E-7	7	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	15q23	15	71352781	THSD4	THSD4			79875			rs12899618-?	rs12899618	0	12899618	intron	0	NR	4E-21	20.39794000867204	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	16q21	16	58041378	MMP15	MMP15			4324			rs12447804-?	rs12447804	0	12447804	intron	0	NR	4E-8	7.397940008672037	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	16q23.1	16	75356418	CFDP1	CFDP1			10428			rs2865531-?	rs2865531	0	2865531	intron	0	NR	2E-8	7.698970004336018	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	16q23.1	16	78154599	WWOX	WWOX			51741			rs8056446-A 	rs8056446   	0	8056446	intron	0	NR	8E-8	7.096910013008055	(FEV1, Pack-years 	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	15q25.1	15	78618839	CHRNA3	CHRNA3			1136			rs8040868-T 	rs8040868   	0	8040868	cds-synon	0	NR	9E-8	7.045757490560674	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	15q25.1	15	78618839	CHRNA3	CHRNA3			1136			rs8040868-T 	rs8040868   	0	8040868	cds-synon	0	NR	7E-7	6.154901959985743	(FEV1, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	16q23.1	16	78154006	WWOX	WWOX			51741			rs12716850-A 	rs12716850   	0	12716850	intron	0	NR	1E-7	7	(FEV1, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	NR			DPCR1 ,  MUC21	 - 						rs9368649-A 	rs9368649   					NR	1E-7		(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	NR			DPCR1 ,  MUC21	 - 						rs9368649-A 	rs9368649   					NR	1E-7		(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p22.3	6	22017509	SOX4 ,  PRL	CASC15			401237			rs1928168-T 	rs1928168   	0	1928168	intron	0	NR	2E-7	6.698970004336019	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p22.3	6	21996631	SOX4 ,  PRL	CASC15			401237			rs2078543-A 	rs2078543   	0	2078543	intron	0	NR	2E-7	6.698970004336019	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	2p24.3	2	15786044	DDX1 ,  MYCN 	DDX1 - RNU5E-7P	1653	100873836		      154.93	       78.89	rs2544527-T 	rs2544527   	0	2544527	Intergenic	1	NR	2E-7	6.698970004336019	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	5q11.2	5	52883958	ITGA1	ITGA1			3672			rs2456203-T 	rs2456203   	0	2456203	intron	0	NR	2E-7	6.698970004336019	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	18p11.22	18	10078074	TXNDC2 ,  VAPA 	RNA5SP450 - LINC01254	100873695	101927350		      154.05	      327.06	rs8089099-A 	rs8089099   	0	8089099	Intergenic	1	NR	3E-7	6.522878745280337	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	18p11.22	18	10078074	TXNDC2 ,  VAPA 	RNA5SP450 - LINC01254	100873695	101927350		      154.05	      327.06	rs8089099-A 	rs8089099   	0	8089099	Intergenic	1	NR	4E-7	6.397940008672037	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	11q13.4	11	73601207	FAM168A ,  PLEKHB	HMGN2P38 - PLEKHB1	100874482	58473		       20.65	       44.97	rs10751226-T 	rs10751226   	0	10751226	Intergenic	1	NR	4E-7	6.397940008672037	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	11q13.4	11	73601207	FAM168A ,  PLEKHB	HMGN2P38 - PLEKHB1	100874482	58473		       20.65	       44.97	rs10751226-T 	rs10751226   	0	10751226	Intergenic	1	NR	3E-7	6.522878745280337	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	11q13.4	11	73325436	ARHGEF	ARHGEF17			9828			rs2027760-A 	rs2027760   	0	2027760	intron	0	NR	4E-7	6.397940008672037	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	11q13.4	11	73325436	ARHGEF	ARHGEF17			9828			rs2027760-A 	rs2027760   	0	2027760	intron	0	NR	1E-6	5.999999999999999	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	1p36.13	1	17265184	PADI3	PADI3			51702			rs3003429-T 	rs3003429   	0	3003429	intron	0	NR	4E-7	6.397940008672037	(FEV1, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6q25.1	6	150249731	PPP1R1	PPP1R14C			81706			rs3734729-A 	rs3734729   	0	3734729	UTR-3	0	NR	4E-7	6.397940008672037	(FEV1, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6q25.1	6	150249731	PPP1R1	PPP1R14C			81706			rs3734729-A 	rs3734729   	0	3734729	UTR-3	0	NR	7E-7	6.154901959985743	(FEV1, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p22.1	6	29658544	MOG	MOG			4340			rs2252711-T 	rs2252711   	0	2252711	intron	0	NR	4E-7	6.397940008672037	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p21.31	6	35436577	PPARD ,  FANCE	TRNAI25			100189401			rs2206030-T 	rs2206030   	0	2206030		0	NR	5E-7	6.30102999566398	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	3q27.3	3	187825554	RTP2 ,  BCL6 	BCL6 - LPP-AS2	604	339929		       79.83	      325.65	rs10513821-A 	rs10513821   	0	10513821	Intergenic	1	NR	5E-7	6.30102999566398	(FEV1/FVC, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	12q21.33	12	91080021	KERA ,  LUM	KERA - LUM	11081	4060		       21.67	       23.43	rs10777288-A 	rs10777288   	0	10777288	Intergenic	1	NR	5E-7	6.30102999566398	(FEV1/FVC, Ever-smoking)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	9q33.1	9	116551938	ASTN2	ASTN2;LOC100128505			23245;100128505			rs13290997-A 	rs13290997   	0	13290997	intron;intron	0	NR	5E-7	6.30102999566398	(FEV1, Pack-years)	NR	NR	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	2q36.3	2	229359315	DNER	DNER			92737			rs7594321-T	rs7594321	0	7594321	intron	0	0.35	3E-9	8.522878745280337	(FEV1/FVC, Ever-smoking)	    .02	[-0.01048-0.04048] unit decrease	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	2q36.3	2	229359315	DNER	DNER			92737			rs7594321-T	rs7594321	0	7594321	intron	0	0.35	5E-11	10.30102999566398	(FEV1/FVC, Pack-years)	    .00	[0.00005-0.00035] unit decrease	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p21.32	6	32712799	HLA-DQB1, HLA-DQA2	TRNAI25			100189401			rs7764819-T	rs7764819	0	7764819		0	0.89	4E-9	8.397940008672036	(FEV1/FVC, Ever-smoking)	    .00	[-0.04016-0.04216] unit decrease	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	6p21.32	6	32712799	HLA-DQB1, HLA-DQA2	TRNAI25			100189401			rs7764819-T	rs7764819	0	7764819		0	0.89	4E-9	8.397940008672036	(FEV1/FVC, Pack-years)	    .00	[-0.00014-0.00025] unit decrease	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	17q24.3	17	71129465	KCNJ2, SOX9	CASC17			101928165			rs11654749-T	rs11654749	0	11654749	intron	0	0.39	1E-8	8	(FEV1, Ever-smoking)	    .02	[-0.00848-0.04248] unit decrease	NR [~2.5 Million] (imputed)	N
02/27/2013	23284291	Hancock DB	12/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23284291 	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (interaction)	50,047 European ancestry individuals	NR	17q24.3	17	71129465	KCNJ2, SOX9	CASC17			101928165			rs11654749-T	rs11654749	0	11654749	intron	0	0.39	7E-8	7.154901959985742	(FEV1, Pack-years)	    .00	[-0.00008-0.00018] unit increase	NR [~2.5 Million] (imputed)	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	11p15.4	11	5281833	HBE1, HBB, HBD, HBBP1, HBG1	LCRB			387281			rs2213169-T	rs2213169	0	2213169		0	0.1362	5E-11	10.30102999566398	(AA, HCT)	    .45	[0.31-0.58] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	134391	Alpha-globin cluster	NPRL3			8131			rs7203560-G	rs7203560	0	7203560	intron	0	0.06801	2E-8	7.698970004336018	(AA, HGB)	    .20	[0.13-0.27] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	134391	Alpha-globin cluster	NPRL3			8131			rs7203560-G	rs7203560	0	7203560	intron	0	0.06801	2E-23	22.69897000433602	(AA, RBC)	    .15	[0.12-0.17] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	Xq28	23	154785832	MPP1	MPP1			4354			rs5987027-T	rs5987027	0	5987027	intron	0	0.2462	1E-11	11	(AA, RBC)	    .07	[0.053-0.096] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	1q23.1	1	159001296	DARC	IFI16			3428			rs4657616-G	rs4657616	0	4657616	intron	0	0.099	5E-47	46.30102999566398	(AA, WBC)	    .06	[0.053-0.07] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	6p21.33	6	31973120	ZBTB12, CFB, STK19 	DXO;STK19			1797;8859			rs389884-C 	rs389884	0	389884	nearGene-5;intron	0	0.0953	2E-8	7.698970004336018	(EA, WBC)	    .03	[0.017-0.034] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-T	rs855791	0	855791	missense	0	0.4408	3E-8	7.522878745280337	(HGB)	    .09	[0.058-0.121] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	190281	Alpha-globin cluster	LUC7L			55692			rs1211375-A	rs1211375	0	1211375	intron	0	NR	7E-14	13.15490195998574	(RBC)	    .04	[0.031-0.053] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	1q23.3	1	161976937	DARC	ATF6 - OLFML2B	22926	25903		       12.87	        6.26	rs2340727-A	rs2340727	0	2340727	Intergenic	1	NR	2E-23	22.69897000433602	(WBC)	    .02	[0.018-0.027] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	2E-6	5.698970004336018	(HGB)	    .19	[0.11-0.27] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	6q23.3	6	135097880	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-T	rs9399137	0	9399137	Intergenic	1	NR	3E-6	5.522878745280337	(RBC)	    .04	[0.021-0.051] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NR	6p21.33	6	31090563	MUC21, HCG22, C6orf15, CDSN, PSORS1C1, PSORS1C2, CCHCR1	TRNAI25			100189401			rs3130544-A	rs3130544	0	3130544		0	NR	5E-7	6.30102999566398	(WBC)	    .02	[0.011-0.026] unit decrease	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	134391	Alpha-globin cluster	NPRL3			8131			rs7203560-G	rs7203560	0	7203560	intron	0	0.06801	5E-62	61.30102999566397	(AA)	   1.26	[1.11-1.4] unit decrease	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	22q12.3	22	37066896	TMPRSS6 	TMPRSS6			164656			rs855791-T	rs855791	0	855791	missense	0	0.4408	5E-14	13.30102999566398	(EA) 	    .23	[0.17-0.3] unit decrease	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	6q23.3	6	135097497	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.2615	4E-13	12.39794000867204	(EA)	    .25	[0.19-0.32] unit increase	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	22q12.3	22	37066896	TMPRSS6 	TMPRSS6			164656			rs855791-T 	rs855791	0	855791	missense	0	0.4408	7E-19	18.15490195998574		    .23	[0.18-0.28] unit decrease	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	190281	Alpha-globin cluster	LUC7L			55692			rs1211375-A	rs1211375	0	1211375	intron	0	NR	3E-17	16.52287874528034		    .21	[0.16-0.26] unit decrease	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	6q23.3	6	135097880	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-T	rs9399137	0	9399137	Intergenic	1	NR	4E-15	14.39794000867204		    .25	[0.19-0.31] unit decrease	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	7E-9	8.154901959985743		    .36	[0.24-0.48] unit increase	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	6q24.1	6	139514552	CITED2	CITED2 - ATP5F1P6	10370	645440		      139.90	       99.89	rs668459-T	rs668459	0	668459	Intergenic	1	NR	9E-9	8.045757490560675		    .14	[0.092-0.186] unit decrease	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	9p24.1	9	4845520	RCL1 	RCL1			10171			rs10815094-A 	rs10815094	0	10815094	intron	0	NR	5E-6	5.301029995663981		    .15	[0.083-0.209] unit increase	Illumina [544,917]	N
03/20/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NR	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-T	rs855791	0	855791	missense	0	NR	2E-6	5.698970004336018	(AA)	NR	NR	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	134391	Alpha-globin cluster	NPRL3			8131			rs7203560-G	rs7203560	0	7203560	intron	0	0.06801	1E-33	32.99999999999999	(AA)	    .53	[0.45-0.62] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NR	11p15.4	11	5281833	HBE1, HBB, HBD, HBBP1, HBG1	LCRB			387281			rs2213169-T	rs2213169	0	2213169		0	0.1362	1E-13	13	(AA)	    .22	[0.16-0.28] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	530124	Alpha-globin cluster	CAPN15			6650			rs2266928-A	rs2266928	0	2266928	intron	0	NR	3E-11	10.52287874528034		    .12	[0.083-0.152] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NR	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-T	rs855791	0	855791	missense	0	0.4408	4E-7	6.397940008672037		    .09	[0.054-0.121] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NR	6q23.3	6	135105435	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      126.00	       75.88	rs4895441-A	rs4895441	0	4895441	Intergenic	1	NR	3E-6	5.522878745280337		    .09	[0.054-0.132] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NR	1q32.1	1	203682799	ATP2B4	ATP2B4			493			rs1541252-?	rs1541252	0	1541252	UTR-5	0	NR	9E-8	7.045757490560674		NR	NR	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	134391	Alpha-globin cluster	NPRL3			8131			rs7203560-G	rs7203560	0	7203560	intron	0	0.06801	8E-43	42.09691001300805	(AA)	   2.56	[2.19-2.92] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	Xq28	23	154785832	MPP1	MPP1			4354			rs5987027-T	rs5987027	0	5987027	intron	0	0.2462	4E-10	9.397940008672037	(AA)	    .92	[0.63-1.2] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	6q23.3	6	135097497	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.2615	2E-9	8.698970004336019	(EA)	    .54	[0.37-0.72] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	22q12.3	22	37066896	TMPRSS6 	TMPRSS6			164656			rs855791-T 	rs855791	0	855791	missense	0	0.4408	2E-9	8.698970004336019	(EA)	    .48	[0.32-0.64] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	16p13.3	16	190281	Alpha-globin cluster	LUC7L			55692			rs1211375-A	rs1211375	0	1211375	intron	0	NR	1E-16	16		    .53	[0.4-0.65] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-T	rs855791	0	855791	missense	0	0.4408	7E-12	11.15490195998574		    .46	[0.33-0.59] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	6q23.3	6	135097880	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-T	rs9399137	0	9399137	Intergenic	1	NR	1E-11	11		    .55	[0.39-0.71] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	6q24.1	6	139514552	CITED2	CITED2 - ATP5F1P6	10370	645440		      139.90	       99.89	rs668459-T 	rs668459	0	668459	Intergenic	1	NR	4E-8	7.397940008672037		    .34	[0.22-0.46] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	6p21.1	6	41937537	USP49, MED20, BYSL, CCND3	CCND3			896			rs3218097-T	rs3218097	0	3218097	intron	0	NR	9E-8	7.045757490560674		    .42	[0.27-0.58] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NR	9p24.1	9	4844265	RCL1	RCL1			10171			rs2236496-T	rs2236496	0	2236496	intron	0	NR	2E-7	6.698970004336019		    .42	[0.26-0.57] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	3p14.3	3	56815721	ARHGEF3	ARHGEF3			50650			rs1354034-C	rs1354034	0	1354034	intron	0	0.27	9E-13	12.04575749056067	(AA)	  11.44	[8.31-14.57] unit increase	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	6p21.31	6	33572432	BAK1	BAK1			578			rs210134-A	rs210134	0	210134	nearGene-3	0	0.2675	2E-8	7.698970004336018	(AA)	   8.92	[5.82-12.02] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	3p14.3	3	56815721	ARHGEF3 	ARHGEF3			50650			rs1354034-T 	rs1354034	0	1354034	intron	0	0.4092	4E-9	8.397940008672036	(EA) 	   9.44	[6.3-12.59] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	12q13.13	12	54342686	COPZ1 	COPZ1			22818			rs4326844-A 	rs4326844	0	4326844	intron	0	0.4493	5E-8	7.30102999566398	(EA) 	   8.68	[5.57-11.79] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	3p14.3	3	56815721	ARHGEF3	ARHGEF3			50650			rs1354034-T	rs1354034	0	1354034	intron	0	NR	1E-19	19		  10.44	[8.18-12.69] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	6p21.31	6	33573942	BAK1 	BAK1			578			rs513349-A 	rs513349	0	513349	intron	0	NR	2E-12	11.69897000433602		   7.75	[5.59-9.92] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	10q21.3	10	63203689	JMJD1C	JMJD1C			221037			rs4379723-T	rs4379723	0	4379723	intron	0	NR	7E-7	6.154901959985743		   5.43	[3.28-7.58] unit decrease	Illumina [544,917]	N
03/15/2013	23263863	Li J	12/20/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23263863	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet counts	7,943 African American children, 6,234 European ancestry children	NR	9p24.1	9	4834394	RCL1	RCL1			10171			rs457287-A	rs457287	0	457287	intron	0	NR	1E-6	5.999999999999999		   5.99	[3.55-8.42] unit decrease	Illumina [544,917]	N
02/23/2013	23255317	Wooten EC	12/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23255317	Formin homology 2 domain containing 3 variants associated with hypertrophic cardiomyopathy.	Hypertrophic cardiomyopathy	174 European ancestry cases, 823 European ancestry controls	1,012 European ancestry cases, 1,326 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [311,399]	N
03/06/2013	23247145	Makela KM	12/17/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247145	Genome-wide association study pinpoints a new functional apolipoprotein B variant influencing oxidized low-density lipoprotein levels but not cardiovascular events: AtheroRemo Consortium.	LDL (oxidized)	2,080 European ancestry individuals	4,238 European ancestry individuals	2p24.1	2	21008652	apoB	APOB			338			rs676210-G	rs676210	0	676210	missense	0	0.77	3E-47	46.52287874528033		  10.50	 (U/L increase)	Illumina [2,543,887] (imputed)	N
03/11/2013	23242368	Jiang DK	12/16/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23242368	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma (hepatitis B virus related)	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-G	rs7574865	0	7574865	intron	0	0.67	2E-10	9.698970004336017		   1.21	[1.14-1.28] 	Illumina (1,672,517) imputed	N
03/11/2013	23242368	Jiang DK	12/16/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23242368	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma (hepatitis B virus related)	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	6p21.32	6	32698518	HLA-DQ	TRNAI25			100189401			rs9275319-A	rs9275319	0	9275319		0	0.88	3E-17	16.52287874528034		   1.49	[1.36-1.63] 	Illumina (1,672,517) imputed	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	8q13.3	8	70474669	NCOA2, TRAM1	LOC101926892			101926892			rs10091374-A	rs10091374	0	10091374	intron	0	NR	9E-9	8.045757490560675	(Continous Variable)	    .04	[0.027-0.059] ug/L decrease	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	1q32.1	1	201376359	TNNT2	TNNT2			7139			rs12564445-A	rs12564445	0	12564445	intron	0	NR	5E-8	7.30102999566398	(Dichotomous variable)	   2.33	[1.72-3.16] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	1p31.1	1	73588377	LRRIQ3	KRT8P21 - LRRIQ3	126811	127255		      481.89	      437.64	rs2341260-T	rs2341260	0	2341260	Intergenic	1	NR	4E-6	5.397940008672037	(Continous Variable)	    .05	[0.03-0.07] ug/L decrease	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	NR			NRG1	 - 						rs74733271-A	rs74733271					NR	5E-6		(Continous Variable)	    .04	[0.02-0.06] ug/L increase	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	8p21.1	8	28048371	C8orf80	NUGGC			389643			rs6983473-A	rs6983473	0	6983473	intron	0	NR	4E-6	5.397940008672037	(Continous Variable)	    .04	[0.02-0.06] ug/L decrease	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	6p22.1	6	28053042	OR2B7P	TRNAI25			100189401			rs172166-C	rs172166	0	172166		0	NR	5E-6	5.301029995663981	(Continous Variable)	    .04	[0.04-0.06] ug/L decrease	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	2p16.3	2	52486669	LOC129656	ZNF863P - MIR4431	100419682	100616431		      409.23	      215.85	rs1526687-T	rs1526687	0	1526687	Intergenic	1	NR	5E-6	5.301029995663981	(Continous Variable)	    .04	[0.02-0.06] ug/L increase	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	18q22.1	18	65217682	CDH7	LINC00305 - CDH7	221241	1005		     1068.66	      532.57	rs605920-C	rs605920	0	605920	Intergenic	1	NR	6E-6	5.221848749616356	(Continous Variable)	    .04	[0.02-0.05] ug/L decrease	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	18q21.33	18	63192088	BCL2	BCL2			596			rs899967-C	rs899967	0	899967	intron	0	NR	7E-6	5.154901959985742	(Continous Variable)	    .04	[0.02-0.05] ug/L decrease	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	2q11.2	2	96176055	STARD7	DUSP2 - STARD7	1844	56910		       30.62	        8.80	rs11886999-T	rs11886999	0	11886999	Intergenic	1	NR	8E-6	5.096910013008055	(Continous Variable)	    .04	[0.02-0.06] ug/L increase	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	1q32.1	1	201376359	TNNT2	TNNT2			7139			rs12564445-A	rs12564445	0	12564445	intron	0	NR	5E-8	7.30102999566398	(Dichotomous variable)	   2.33	[1.72-3.16] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	11q25	11	131937277	HNT	NTM			50863			rs12098973-G	rs12098973	0	12098973	intron	0	NR	1E-6	5.999999999999999	(Dichotomous variable)	   2.17	[1.59-3.03] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	2p25.1	2	10763286	ATP6V1C2	ATP6V1C2			245973			rs1198872-T	rs1198872	0	1198872	intron	0	NR	2E-6	5.698970004336018	(Dichotomous variable)	   2.04	[1.51-2.74] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	1p36.21	1	15753676	FBLIM1	TMEM82 - FBLIM1	388595	54751		        5.88	        2.66	rs12725198-A	rs12725198	0	12725198	Intergenic	1	NR	3E-6	5.522878745280337	(Dichotomous variable)	   1.85	[1.43-2.39] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	3q21.1	3	122295719	CASR	CASR - HNRNPA1P23	846	100130002		        9.22	       21.89	rs13083990-T	rs13083990	0	13083990	Intergenic	1	NR	4E-6	5.397940008672037	(Dichotomous variable)	   2.66	[1.76-4.02] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	4q23	4	99242716	CXCL13	LOC100507053			100507053			rs2201728-G	rs2201728	0	2201728	intron	0	NR	5E-6	5.301029995663981	(Dichotomous variable)	   3.13	[1.92-5] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	6q23.3	6	137945548	TNFAIP3	TNFAIP3 - RPSAP42	7128	100270919		       62.23	       49.72	rs9321637-C	rs9321637	0	9321637	Intergenic	1	NR	8E-6	5.096910013008055	(Dichotomous variable)	   2.17	[1.56-3.13] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	18p11.31	18	3512218	DLGAP1	DLGAP1			9229			rs17724172-C	rs17724172	0	17724172	intron	0	NR	9E-6	5.045757490560675	(Dichotomous variable)	   2.04	[1.49-2.78] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23247143	Yu B	12/16/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23247143	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NR	10q26.13	10	123447985	GPR26	RPS26P39 - GPR26	100128168	2849		      275.34	      218.37	rs17666963-T	rs17666963	0	17666963	Intergenic	1	NR	9E-6	5.045757490560675	(Dichotomous variable)	   2.28	[1.58-3.28] 	Affymetrix and Illumina [~2.5 Million] (imputed)	N
02/27/2013	23237013	Power RA	12/14/2012	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/23237013	Estimating the heritability of reporting stressful life events captured by common genetic variants.	Reporting of stressful life event	2,578 European ancestry depression cases and controls	864 European ancestry depression cases, 257 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [541,628]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	1q23.2	1	160108064	ATP1A2	IGSF8 - ATP1A2	93185	477		        9.21	        7.67	rs6688363-T	rs6688363	0	6688363	Intergenic	1	0.166	2E-7	6.698970004336019	(Effect of Olanzapine on CGI-S)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	16q21	16	66124833	Intergenic	LOC101927676			101927676			rs8050896-T	rs8050896	0	8050896	intron	0	0.161	4E-8	7.397940008672037	(Effect of Risperidone on CGI-S)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	18q21.33	18	62412879	TNFRSF11A	TNFRSF11A - RPL17P44	8792	100129584		       25.17	        2.77	rs2980976-A	rs2980976	0	2980976	Intergenic	1	0.168	3E-7	6.522878745280337	(Effect of Risperidone on CGI-S)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	4q24	4	105376356	PPA2	PPA2			27068			rs2636697-G	rs2636697	0	2636697	intron	0	0.038	4E-7	6.397940008672037	(Effect of Risperidone on CGI-S)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	11q14.1	11	80347435	Intergenic	MIR5579 - ARL6IP1P3	100847000	729790		      925.21	      305.99	rs7395555-C	rs7395555	0	7395555	Intergenic	1	0.145	2E-7	6.698970004336019	(Effect of Ziprasidone on CGI-S)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	2q22.1	2	138521352	SPOPL	SPOPL			339745			rs10170310-G	rs10170310	0	10170310	intron	0	0.213	1E-7	7	(Effect of Olanzapine on PGI)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	5q12.1	5	59684120	PDE4D	PDE4D			5144			rs17382202-T	rs17382202	0	17382202	intron	0	0.153	4E-8	7.397940008672037	(Effect of Quetiapine on PGI)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23241943	Clark SL	12/12/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23241943	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NR	15q13.1	15	29901265	TJP1	TJP1			7082			rs711355-T	rs711355	0	711355	intron	0	0.33	2E-7	6.698970004336019	(Effect of Risperidone on PGI)	NR	NR	Affymetrix [492,900]	N
02/19/2013	23229837	Aragam N	12/11/2012	J Mol Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/23229837	TMPRSS9 and GRIN2B are associated with neuroticism: a genome-wide association study in a European sample.	Neuroticism	2,748 European ancestry cases	NR	19p13.3	19	2410486	TMPRSS9	TMPRSS9			360200			rs4806846-A	rs4806846	0	4806846	intron	0	0.14	8E-6	5.096910013008055		NR	NR	Perlegen [437,547]	N
03/15/2013	23233662	Ramsey LB	12/11/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23233662	Genome-wide study of methotrexate clearance replicates SLCO1B1.	Methotrexate clearance (acute lymphoblastic leukemia)	22 East Asian ancestry cases, 58 African ancestry, African American, or Afro-Caribbean ancestry cases, 266 Hispanic, or Latin American ancestry cases, 806 European ancestry cases, 127 other ancestry cases	699 European ancestry cases	12p12.1	12	21224625	SLCO1B1	SLCO1B1			10599			rs4149080-C	rs4149080	0	4149080	intron	0	0.18	6E-21	20.22184874961635		  12.00	[NR] mL/min/m2 decrease	Affymetrix [~5.2 Million] (imputed)	N
03/05/2013	23233654	Umi?evi? Mirkov	12/11/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23233654	Genome-wide association analysis of anti-TNF drug response in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	882 European ancestry cases	1,821 European ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,450,096] (imputed)	N
12/16/2012	23001997	Hou S	12/06/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23001997	Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	2q14.2	2	121261187	TFCP2L1	TFCP2L1			29842			rs17006292-?	rs17006292	0	17006292	intron	0	0.925	5E-9	8.301029995663981		   4.17	[2.50-5.00] 	Affyemtrix [661,736]	N
12/16/2012	23001997	Hou S	12/06/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23001997	Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	2q32.3	2	191153045	STAT4	STAT4			6775			rs897200-A	rs897200	0	897200	intron	0	0.529	6E-9	8.221848749616356		   1.45	[1.30-1.60] 	Affyemtrix [661,736]	N
12/16/2012	23001997	Hou S	12/06/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23001997	Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	6	31131800	PSORS1C1	PSORS1C1			170679			rs4959053-?	rs4959053	0	4959053	intron	0	.11	2E-20	19.69897000433602		   4.38	[3.20-5.99] 	Affyemtrix [661,736]	N
12/16/2012	23001997	Hou S	12/06/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23001997	Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	6	31368641	MICA, MICB, DHFRP2	TRNAI25			100189401			rs9266406-?	rs9266406	0	9266406		0	.40	2E-10	9.698970004336017		   2.29	[1.77-2.95] 	Affyemtrix [661,736]	N
12/16/2012	23001997	Hou S	12/06/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23001997	Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	2q32.3[rs897200]; 2q32.3[rs7572482]			STAT4	 - 						3-SNP Haplotype	rs897200, rs7572482, rs7574070					NR	4E-8		rs897200-A, rs7572482-T, rs7574070-T	   1.44	[1.3-1.6] 	Affyemtrix [661,736]	N
12/16/2012	23001997	Hou S	12/06/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/23001997	Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	6p21.33	6	31090401	HCG22	TRNAI25			100189401			rs4947296-?	rs4947296	0	4947296		0	NR	1E-11	11		   2.57	[1.96-3.37] 	Affyemtrix [661,736]	N
02/08/2013	23223146	Le Clerc S	12/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/23223146	A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.	Aging (facial)	502 European ancestry women	NR	3q13.33	3	120866468	STXBP5L, FBXO40	NAP1L1P3 - STXBP5L	100130335	9515		       59.73	       41.74	rs322458-G	rs322458	0	322458	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Illumina [795,063]	N
02/08/2013	23223146	Le Clerc S	12/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/23223146	A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.	Aging (facial)	502 European ancestry women	NR	3q13.33[rs322458]; 3q13.33[rs17740066]			STXBP5L, FBXO40	 - 						2-SNP haplotype-1	rs322458, rs17740066					NR	6E-9		(rs322458-G, rs17740066-G)	NR	NR	Illumina [795,063]	N
02/08/2013	23223146	Le Clerc S	12/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/23223146	A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.	Aging (facial)	502 European ancestry women	NR	3q13.33[rs322458]; 3q13.33[rs6782025]			STXBP5L, FBXO40	 - 						2-SNP haplotype-2	rs322458, rs6782025					NR	4E-9		(rs322458-G, rs6782025-A)	NR	NR	Illumina [795,063]	N
02/08/2013	23223146	Le Clerc S	12/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/23223146	A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.	Aging (facial)	502 European ancestry women	NR	3q13.33[rs322458]; 3q13.33[rs6775899]			STXBP5L, FBXO40, POLQ	 - 						2-SNP haplotype-3	rs322458, rs6775899					NR	1E-9		(rs322458-G, rs6775899-A)	NR	NR	Illumina [795,063]	N
03/05/2013	23216389	Zuo L	12/06/2012	Alcohol Clin Exp Res	http://www.ncbi.nlm.nih.gov/pubmed/23216389	Genome-wide significant association signals in IPO11-HTR1A region specific for alcohol and nicotine codependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls	Up to 907 European ancestry cases, up to 2,830 European ancestry controls, up to 449 African American cases, up to 480 African American controls	5q12.1	5	63290474	HTR1A, IPO11	ISCA1P1 - HTR1A	389293	3350		      513.13	      669.57	rs7445832-A	rs7445832	0	7445832	Intergenic	1	NR	1E-9	8.999999999999998	(Combined, Australian replication)	   1.15	[NR] 	Illumina [805,814]	N
03/05/2013	23216389	Zuo L	12/06/2012	Alcohol Clin Exp Res	http://www.ncbi.nlm.nih.gov/pubmed/23216389	Genome-wide significant association signals in IPO11-HTR1A region specific for alcohol and nicotine codependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls	Up to 907 European ancestry cases, up to 2,830 European ancestry controls, up to 449 African American cases, up to 480 African American controls	5q12.2	5	63737891	NA	ISCA1P1 - HTR1A	389293	3350		      960.55	      222.16	rs10042968-G	rs10042968	0	10042968	Intergenic	1	NR	8E-7	6.096910013008056	(Combined, African American replication)	   1.42	[NR] 	Illumina [805,814]	N
02/20/2013	23213074	Adams LA	12/05/2012	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/23213074	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NR	1p21.2	1	99317401	LPPR4	LPPR4 - PALMD	9890	54873		        7.82	      328.47	rs12743824-C	rs12743824	0	12743824	Intergenic	1	0.441	5E-6	5.301029995663981		   2.30	[-0.05200-4.65200] 	Illumina [2,078,805] (imputed)	N
02/20/2013	23213074	Adams LA	12/05/2012	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/23213074	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NR	4q13.3	4	71738582	GC	LDHAL6EP - GC	100420462	2638		      300.70	        3.10	rs222054-C	rs222054	0	222054	Intergenic	1	0.301	1E-6	5.999999999999999		   2.54	[0.17-4.91] 	Illumina [2,078,805] (imputed)	N
02/20/2013	23213074	Adams LA	12/05/2012	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/23213074	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NR	13q14.13	13	46129007	LCP1	LCP1			3936			rs7324845-A	rs7324845	0	7324845	intron	0	0.096	3E-6	5.522878745280337		   3.29	[0.76-5.82] 	Illumina [2,078,805] (imputed)	N
02/20/2013	23213074	Adams LA	12/05/2012	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/23213074	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NR	16q23.3	16	84013110	SLC38, A8	SLC38A8			146167			rs11864146-A	rs11864146	0	11864146	intron	0	0.100	2E-6	5.698970004336018		   3.14	[0.65-5.63] 	Illumina [2,078,805] (imputed)	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1p34.3	1	39604267	HEYL	SNORA55 - HEYL	677834	26508		       36.76	       19.16	rs3916164-G	rs3916164	0	3916164	Intergenic	1	0.71	3E-10	9.522878745280336	(MCH)	    .01	[0.0072-0.0088] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1q23.1	1	158605939	OR10Z1, OR6Y1, SPTA1	OR10Z1			128368			rs857684-C	rs857684	0	857684	nearGene-5	0	0.74	4E-16	15.39794000867204	(EA, MCHC)	    .01	[-0.01556-0.02756] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1q32.1	1	199038079	MIR181A1	RPS2P9 - FLJ43585	100131866	400800		       88.22	      110.52	rs7529925-C	rs7529925	0	7529925	Intergenic	1	0.28	8E-9	8.096910013008056	(EA, RBCC)	    .01	[0.010-0.018] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1q44	1	247876149	TRIM58	TRIM58			25893			rs3811444-T	rs3811444	0	3811444	missense	0	0.35	5E-10	9.301029995663981	(EA, RBCC)	    .02	[0.012-0.024] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	2p21	2	46127912	PRKCE	PRKCE			5581			rs4953318-A	rs4953318	0	4953318	intron	0	0.62	3E-19	18.52287874528033	(EA, PCV)	    .15	[0.12-0.19] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	2p16.1	2	60393151	BCL11A	MIR4432 - BCL11A	100616473	53335		        5.71	       58.02	rs243070-T	rs243070	0	243070	Intergenic	1	0.72	4E-13	12.39794000867204	(EA, MCV)	    .18	[0.13-0.23] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	2q13	2	111092082	ACOXL	ACOXL			55289			rs10207392-G	rs10207392	0	10207392	intron	0	0.44	4E-11	10.39794000867204	(EA, MCV)	    .13	[0.083-0.181] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	3p24.2	3	24309320	THRB	THRB			7068			rs9310736-A	rs9310736	0	9310736	intron	0	0.35	6E-16	15.22184874961635	(EA, MCV)	    .21	[0.16-0.26] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	3q23	3	141547651	RASA2	RASA2			5922			rs6776003-A	rs6776003	0	6776003	intron	0	0.44	4E-11	10.39794000867204	(EA, MCV)	    .14	[0.087-0.189] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	3q29	3	196107486	TFRC	RNU7-18P - LINC00885	100147766	401109		       34.61	       35.15	rs11717368-C	rs11717368	0	11717368	Intergenic	1	0.52	7E-19	18.15490195998574	(EA, MCH)	    .01	[0.00016-0.01584] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	4q12	4	54528857	KIT	PDGFRA - KIT	5156	3815		      230.61	      129.07	rs218238-A	rs218238	0	218238	Intergenic	1	0.78	3E-39	38.52287874528033	(EA, RBCC)	    .03	[0.027-0.039] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6p22.2	6	25842723	SLC17A3, HFE	SLC17A1 - SLC17A3	6568	10786		       10.66	        2.38	rs1408272-G	rs1408272	0	1408272	Intergenic	1	0.07	5E-67	66.30102999566397	(EA, MCH)	    .03	[0.015-0.051] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6p21.1	6	41946640	CCND3	CCND3			896			rs9349204-G	rs9349204	0	9349204	intron	0	0.27	2E-40	39.69897000433601	(EA, MCV)	    .37	[0.31-0.42] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6q21	6	109305762	CCDC162P	CCDC162P			221262			rs1008084-G	rs1008084	0	1008084	intron	0	0.56	6E-26	25.22184874961635	(EA, MCH)	    .01	[0.0041-0.0159] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6q23.3	6	135106021	HBS1L	MIR3662 - MYB	100500880	4602		      126.59	       75.29	rs9389269-T	rs9389269	0	9389269	Intergenic	1	0.72	3E-19	18.52287874528033	(EA, MCV)	    .60	[0.55-0.65] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	6q24.1	6	139523292	LOC645434, CITED2	CITED2 - ATP5F1P6	10370	645440		      148.64	       91.15	rs590856-G	rs590856	0	590856	Intergenic	1	0.43	5E-36	35.30102999566397	(EA, MCV)	    .31	[0.26-0.36] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7p12.2	7	50360747	IKZF1	IKZF1;LOC102723522			10320;102723522			rs12718598-T	rs12718598	0	12718598	intron;nearGene-5	0	0.51	2E-13	12.69897000433602	(EA, MCV)	    .20	[0.15-0.26] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7q22.1	7	100642673	ACTL6B, TFR2	TFR2;ACTL6B			7036;51412			rs2075672-A	rs2075672	0	2075672	intron;nearGene-3	0	0.39	2E-20	19.69897000433602	(EA, RBCC)	    .02	[0.016-0.028] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7q36.1	7	151708919	PRKAG2	PRKAG2			51422			rs10480300-C	rs10480300	0	10480300	intron	0	0.72	8E-15	14.09691001300805	(EA, Hgb)	    .05	[0.038-0.066] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	9p24.1	9	4844265	RCL1	RCL1			10171			rs2236496-C	rs2236496	0	2236496	intron	0	0.22	1E-19	19	(EA, MCV)	    .28	[0.22-0.34] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-T	rs579459	0	579459	Intergenic	1	0.8	9E-18	17.04575749056067	(EA, RBCC)	    .02	[0.015-0.027] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	10q11.21	10	45470974	MARCH8	MARCH8			220972			rs901683-A	rs901683	0	901683	intron	0	0.08	2E-16	15.69897000433602	(EA, MCV)	    .36	[0.27-0.46] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	10q22.1	10	69340132	HK1	HK1			3098			rs10159477-A	rs10159477	0	10159477	intron	0	0.16	4E-20	19.39794000867203	(EA, Hgb)	    .09	[0.067-0.107] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	10q24.2	10	99522443	NKX2-3	GOT1 - NKX2-3	2805	159296		       91.67	       10.49	rs11190134-G	rs11190134	0	11190134	Intergenic	1	0.6	1E-10	10	(EA, MCH)	    .01	[0.0032-0.0188] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12p13.33	12	2414189	CACNA1C	CACNA1C			775			rs7312105-G	rs7312105	0	7312105	intron	0	0.36	3E-9	8.522878745280337	(EA, PCV)	    .10	[0.067-0.141] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12p13.32	12	4223312	CCND2	RPL18P9 - CCND2	100129645	894		      103.36	       50.42	rs10849023-C	rs10849023	0	10849023	Intergenic	1	0.79	8E-12	11.09691001300806	(EA, MCH)	    .01	[-0.00180-0.01780] unit decrease	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12q21.32	12	88435517	KITLG	TMTC3 - KITLG	160418	4254		      235.63	       57.28	rs11104870-C	rs11104870	0	11104870	Intergenic	1	0.3	6E-11	10.22184874961635	(EA, RBCC	    .01	[0.0091-0.0169] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12q24.12	12	111446804	SH2B3, ATXN2	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.48	4E-19	18.39794000867203	(EA, Hgb)	    .05	[0.039-0.063] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	14q23.3	14	65035521	FNTB, MAX	FNTB;MAX;CHURC1-FNTB			2342;4149;100529261			rs7155454-A	rs7155454	0	7155454	intron;intron;intron	0	0.51	2E-12	11.69897000433602	(EA, MCH)	    .00	[-0.00584-0.00984] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	14q24.2	14	69899207	SMOC1	SMOC1			64093			rs11627546-C	rs11627546	0	11627546	intron	0	0.84	1E-9	8.999999999999998	(EA, MCV)	    .16	[0.099-0.225] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	14q32.32	14	103356425	EIF5	SNORA28 - HMGB3P26	677811	100130405		       18.45	        7.84	rs17616316-G	rs17616316	0	17616316	Intergenic	1	0.07	8E-11	10.09691001300805	(MCH)	    .01	[-0.00364-0.03164] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-G	rs1532085	0	1532085	intron	0	0.59	7E-11	10.15490195998574	(Hgb)	    .03	[0.022-0.046] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	15q22.31	15	65778355	DENND4A, PTPLAD1	DENND4A			10260			rs2572207-C	rs2572207	0	2572207	intron	0	0.74	3E-9	8.522878745280337	(EA, MCV)	    .15	[0.096-0.210] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	15q24.2	15	76001630	NRG4	NRG4			145957			rs11072566-A	rs11072566	0	11072566	intron	0	0.48	3E-10	9.522878745280336	(EA, Hgb)	    .03	[0.016-0.040] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	16p13.3	16	113599	NPRL3, KIF22	NPRL3			8131			rs11248850-G	rs11248850	0	11248850	intron	0	0.5	6E-23	22.22184874961636	(EA, MCH)	    .01	[-0.00084-0.01484] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	16q24.3	16	88774054	FAM38A, PIEZO1	PIEZO1			9780			rs10445033-G	rs10445033	0	10445033	intron	0	0.37	2E-22	21.69897000433602	(EA, MCHC)	    .02	[-0.00352-0.04352] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	19p13.2	19	12913436	SYCE2, CALR, FARSA	SYCE2			256126			rs741702-A	rs741702	0	741702	intron	0	0.35	8E-20	19.09691001300806	(EA, MCH)	    .01	[-0.00184-0.01384] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	19q13.11	19	32690578	NUDT19	NUDT19			390916			rs3892630-T	rs3892630	0	3892630	intron	0	0.18	1E-10	10	(EA, MCV)	    .18	[0.11-0.24] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	20q13.31	20	57415349	RBM38	RBM38 - HMGB1P1	55544	10357		        6.02	       72.59	rs737092-C	rs737092	0	737092	Intergenic	1	0.49	4E-13	12.39794000867204	(EA, MCV)	    .22	[0.15-0.28] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	21q22.11	21	33982222	ATP5O	LINC00649 - MRPS6	100506334	64968		       11.04	       91.30	rs2032314-T	rs2032314	0	2032314	Intergenic	1	0.08	8E-10	9.096910013008054	(PCV)	    .15	[0.087-0.221] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q11.21	22	21585386	UBE2L3, YDJC	UBE2L3			7332			rs5754217-G	rs5754217	0	5754217	intron	0	0.83	9E-10	9.045757490560675	(EA, MCV)	    .19	[0.13-0.25] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q12.3	22	32484598	FBXO7	FBXO7			25793			rs5749446-T	rs5749446	0	5749446	intron	0	0.62	3E-13	12.52287874528034	(EA, MCH)	    .01	[-0.00084-0.01484] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q12.3	22	37066896	TMPRSS6, KCTD17	TMPRSS6			164656			rs855791-G	rs855791	0	855791	missense	0	0.57	1E-69	68.99999999999999	(EA, MCH)	    .01	[0.0042-0.0198] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q13.33	22	50532837	ODF3B, TYMP, NCAPH2, SCO2	ODF3B			440836			rs140522-C	rs140522	0	140522	nearGene-5	0	0.67	5E-23	22.30102999566398	(EA, MCV)	    .29	[0.23-0.35] unit increase	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
03/19/2013	23222517	van der Harst P	12/05/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23222517	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	7q33	7	135645230	NR	NUP205			23165			rs12530845-?	rs12530845	0	12530845	intron	0	NR	3E-8	7.522878745280337	(MCH)	NR	NR	Illumina, Affymetrix & Perlegen [2,711,806] imputed	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q31.3	1	194561784	EEF1A1P14	EEF1A1P14 - KCNT2	647167	343450		      371.24	     1664.00	rs3001167-G	rs3001167	0	3001167	Intergenic	1	0.316	3E-6	5.522878745280337	(Adiponectin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	11	20334898	HTATIP2	DBX1 - HTATIP2	120237	10553		      174.57	       28.79	rs7128099-G	rs7128099	0	7128099	Intergenic	1	0.335	3E-6	5.522878745280337	(Adiponectin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q25	4	110043206	ELOVL6	RNU6-35P - ELOVL6	100873750	79071		       50.78	        5.87	rs10012953-G	rs10012953	0	10012953	Intergenic	1	0.164	3E-6	5.522878745280337	(Adiponectin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q22.3	5	114513597	KCNN2	LOC101927078			101927078			rs400028-G	rs400028	0	400028	intron	0	0.138	5E-6	5.301029995663981	(Adiponectin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q27	6	170110297	LOC154449	LINC00574 - RPL12P23	80069	100270925		      307.42	       89.49	rs10946292-G	rs10946292	0	10946292	Intergenic	1	0.289	3E-6	5.522878745280337	(Adiponectin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	1	103477009	Intergenic	LOC101928436			101928436			rs7524694-G	rs7524694	0	7524694	intron	0	0.131	7E-6	5.154901959985742	(Diet carbohydrate )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	9149911	NXPH1	RPL9P19 - GAPDHP68	100129634	100132601		      210.46	      465.00	rs1371737-C	rs1371737	0	1371737	Intergenic	1	0.336	7E-6	5.154901959985742	(Diet carbohydrate )	    .04	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	2	218216574	ARPC2	ARPC2;LOC101928487			10109;101928487			rs13403276-G	rs13403276	0	13403276	nearGene-5;ncRNA	0	0.027	7E-6	5.154901959985742	(Diet carbohydrate )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.32	20	57926923	TMEPAI, C20orf85	MIR4532 - HSPD1P19	100616353	100463288		       31.48	      170.30	rs6099847-G	rs6099847	0	6099847	Intergenic	1	0.169	7E-6	5.154901959985742	(Diet carbohydrate )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p14.1	5	25841504	Intergenic	CDH10 - MSNP1	1008	4479		     1196.53	       67.80	rs396045-A	rs396045	0	396045	Intergenic	1	0.247	7E-6	5.154901959985742	(Diet carbohydrate )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.21	8	128207827	TMEM75	MIR1208 - LINC01263	100302281	101927774		       57.64	      197.44	rs11995854-C	rs11995854	0	11995854	Intergenic	1	0.277	8E-6	5.096910013008055	(Diet carbohydrate )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	4	26999373	STIM2	STIM2			57620			rs6822297-G	rs6822297	0	6822297	intron	0	0.405	8E-6	5.096910013008055	(Diet carbohydrate )	    .02	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q23	4	99090020	ADH5	ADH5;LOC100507053			128;100507053			rs13132688-A	rs13132688	0	13132688	nearGene-5;intron	0	0.0060	9E-6	5.045757490560675	(Diet carbohydrate )	    .02	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.3	2	191253321	MYO1B	MYO1B			4430			rs1823913-A	rs1823913	0	1823913	intron	0	0.38	9E-6	5.045757490560675	(Diet carbohydrate )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q14.2	2	119388079	DBI	DBI - TMEM37	1622	140738		       15.53	       41.97	rs1374313-G	rs1374313	0	1374313	Intergenic	1	0.343	9E-7	6.045757490560675	(Diet fat )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.3	13	28794569	SLC46A3	POM121L13P - MTUS2	100874379	23281		       15.63	      230.04	rs954108-A	rs954108	0	954108	Intergenic	1	0.463	1E-6	5.999999999999999	(Diet fat )	    .02	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q35.1	4	182900509	DCTD	DCTD			1635			rs13114435-G	rs13114435	0	13114435	intron	0	0.127	2E-6	5.698970004336018	(Diet fat )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p11.1	16	35447822	TP53TG3B	AGGF1P4 - RARRES2P8	100129351	642652		       57.78	       95.46	rs62057608-A	rs62057608	0	62057608	Intergenic	1	0.028	4E-6	5.397940008672037	(Diet fat )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	9	29545877	LINGO2	PDK1P1 - ME2P1	100421194	286239		      226.93	      277.83	rs13290799-A	rs13290799	0	13290799	Intergenic	1	0.129	4E-6	5.397940008672037	(Diet fat )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q12	12	43040479	ADAMTS20	RPS27P21 - MRPS36P5	100131905	347703		      361.32	       13.60	rs1167125-C	rs1167125	0	1167125	Intergenic	1	0.042	5E-6	5.301029995663981	(Diet fat )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q34	13	110796768	C13orf29	RPL21P107 - LINC00346	644627	283487		       33.59	       67.22	rs167890-A	rs167890	0	167890	Intergenic	1	0.042	5E-6	5.301029995663981	(Diet fat )	    .00	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p16.1	2	60696885	LOC442017	BCL11A - RPL26P13	53335	130865		      143.39	       14.57	rs7589998-G	rs7589998	0	7589998	Intergenic	1	0.0060	5E-6	5.301029995663981	(Diet fat )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.3	2	167709183	CTAGE14P	B3GALT1			8708			rs13408808-G	rs13408808	0	13408808	intron	0	0.083	8E-6	5.096910013008055	(Diet fat )	    .04	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	4	168417369	DDX60L	DDX60L			91351			rs1963569-A	rs1963569	0	1963569	intron	0	0.478	8E-6	5.096910013008055	(Diet fat )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.1	1	158088319	KIRREL	KIRREL			55243			rs6427419-C	rs6427419	0	6427419	intron	0	0.353	8E-6	5.096910013008055	(Diet fat )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q12	14	30020417	PRKD1	PRKD1 - RPS6P24	5587	100128358		       92.72	       34.74	rs718545-G	rs718545	0	718545	Intergenic	1	0.139	9E-6	5.045757490560675	(Diet fat )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q12.1	2	104192254	Intergenic	TMEM182 - AHCYP3	130827	402093		     1348.42	      202.75	rs11890236-G	rs11890236	0	11890236	Intergenic	1	0.035	9E-6	5.045757490560675	(Diet fat )	    .02	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.12	19	14029109	RLN3	RLN3			117579			rs12327666-A	rs12327666	0	12327666	intron	0	0.031	9E-6	5.045757490560675	(Diet fat )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	8	141150965	DENND3	DENND3			22898			rs3816063-A	rs3816063	0	3816063	intron	0	0.242	2E-6	5.698970004336018	(Diet protein )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.2	12	79381468	SYT1	SYT1			6857			rs11114027-A	rs11114027	0	11114027	intron	0	0.094	3E-6	5.522878745280337	(Diet protein )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.21	20	22906619	SSTR4	CYB5AP4 - SSTR4	1532	6754		       20.58	      128.80	rs6075982-A	rs6075982	0	6075982	Intergenic	1	0.303	3E-6	5.522878745280337	(Diet protein )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.23	7	75430050	POM121C, PMS2L3	POM121C			100101267			rs236670-C	rs236670	0	236670	intron	0	0.0050	3E-6	5.522878745280337	(Diet protein )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	12	58356897	ST13P8	RPL21P103 - LRIG3	100271433	121227		      111.99	      515.26	rs1795708-G	rs1795708	0	1795708	Intergenic	1	0.178	4E-6	5.397940008672037	(Diet protein )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.1	14	82875978	Intergenic	ENSAP2 - RNU7-51P	319114	100151647		      182.78	      172.60	rs10130259-G	rs10130259	0	10130259	Intergenic	1	0.066	4E-6	5.397940008672037	(Diet protein )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.11	19	33034013	RHPN2	RHPN2			85415			rs73039434-C	rs73039434	0	73039434	intron	0	0.123	3E-6	5.522878745280337	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.1	14	82788861	Intergenic	ENSAP2 - RNU7-51P	319114	100151647		       95.66	      259.72	rs746630-G	rs746630	0	746630	Intergenic	1	0.26	4E-6	5.397940008672037	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q27	6	169327506	THBS2	THBS2 - DKFZp686L13185	7058	401287		       73.39	       98.90	rs12190007-A	rs12190007	0	12190007	Intergenic	1	0.233	5E-6	5.301029995663981	(Urinary free epinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	4	12498597	RAB28	RNA5SP156 - HSP90AB2P	100873422	391634		     1084.44	      837.79	rs62295889-G	rs62295889	0	62295889	Intergenic	1	0.026	6E-6	5.221848749616356	(Urinary free epinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.3	7	21123736	ASS1P11	RPS26P30 - ASS1P11	100271111	340274		      279.77	       96.24	rs10950840-G	rs10950840	0	10950840	Intergenic	1	0.213	7E-6	5.154901959985742	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	4	38463850	FLJ13197	LINC01258			101928776			rs4615179-A	rs4615179	0	4615179	intron	0	0.098	8E-6	5.096910013008055	(Urinary free epinephrine )	    .02	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	7	84153523	SEMA3A	SEMA3A			10371			rs17158675-A	rs17158675	0	17158675	intron	0	0.057	9E-6	5.045757490560675	(Urinary free epinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q25.1	15	78406417	IREB2	RWDD1P1 - IREB2	404551	3658		       23.22	       31.76	rs7163013-G	rs7163013	0	7163013	Intergenic	1	0.351	9E-6	5.045757490560675	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.12	13	24406811	PARP4	CYCSP33 - PARP4	221180	143		        5.78	       14.12	rs1816752-G	rs1816752	0	1816752	Intergenic	1	0.332	2E-6	5.698970004336018	(Urinary free norepinephrine )	    .05	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.12	21	35641323	SETD4	EZH2P1 - MIR802	266693	768219		       41.07	       79.39	rs12483148-G	rs12483148	0	12483148	Intergenic	1	0.038	5E-6	5.301029995663981	(DBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q11.2	15	24496144	C15orf2	PWRN3 - PWRN1	101928840	791114		       44.33	       62.01	rs35600665-A	rs35600665	0	35600665	Intergenic	1	0.151	7E-6	5.154901959985742	(DBP )	    .02	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	2	237913689	RAMP1	RAMP1 - UBE2F	10267	140739		        1.58	       53.26	rs10185142-A	rs10185142	0	10185142	Intergenic	1	0.216	8E-6	5.096910013008055	(DBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.2	9	2838470	KIAA0020	KIAA0020			9933			rs10968457-A	rs10968457	0	10968457	missense	0	0.047	9E-6	5.045757490560675	(DBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p12	8	36601936	FKSG2	RPL23P10 - RNA5SP264	100270962	100873517		       20.35	      162.51	rs7814403-G	rs7814403	0	7814403	Intergenic	1	0.462	3E-7	6.522878745280337	(Diet carbohydrate )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.1	1	159032432	IFI16, MNDA, AIM2	IFI16			3428			rs861318-A	rs861318	0	861318	intron	0	0.12	1E-6	5.999999999999999	(Diet carbohydrate )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	6	32351860	C6orf10	C6orf10			10665			rs9268301-A	rs9268301	0	9268301	intron	0	0.438	2E-6	5.698970004336018	(Diet carbohydrate )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.3	9	841152	DMRT1	DMRT1			1761			rs912062-C	rs912062	0	912062	nearGene-5	0	0.161	3E-6	5.522878745280337	(Diet carbohydrate )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.2	5	10670928	LOC645763	ANKRD33B - DAP	651746	1611		       13.11	        8.30	rs4702718-G	rs4702718	0	4702718	Intergenic	1	0.32	3E-6	5.522878745280337	(Diet carbohydrate )	    .04	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.4	11	73766000	RAB6A, MRPL48	RAB6A - MRPL48	5870	51642		        4.84	       21.87	rs1723838-A	rs1723838	0	1723838	Intergenic	1	0.032	4E-6	5.397940008672037	(Diet carbohydrate )	    .02	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.12	19	37194064	ZNF585B	ZNF585B			92285			rs11673344-G	rs11673344	0	11673344	intron	0	0.411	5E-6	5.301029995663981	(Diet carbohydrate )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.1	7	43118878	HECW1	HECW1			23072			rs2024125-G	rs2024125	0	2024125	intron	0	0.458	6E-6	5.221848749616356	(Diet carbohydrate )	    .02	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.2	14	84131041	Intergenic	RNU7-51P - RNU3P3	100151647	26843		     1082.40	     1140.86	rs7152554-G	rs7152554	0	7152554	Intergenic	1	0.201	6E-6	5.221848749616356	(Diet carbohydrate )	    .02	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.2	2	189742427	ANKAR, PMS1	ANKAR			150709			rs12053254-G	rs12053254	0	12053254	intron	0	0.125	6E-6	5.221848749616356	(Diet carbohydrate )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p11.2	17	20119786	SPECC1	SPECC1			92521			rs2013441-A	rs2013441	0	2013441	intron	0	0.34	9E-6	5.045757490560675	(Urinary nitrogen )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	9	101775328	GRIN3A	PPP3R2 - MTND3P4	5535	100873181		      180.33	       18.13	rs4523321-A	rs4523321	0	4523321	Intergenic	1	0.0040	1E-6	5.999999999999999	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.2	2	160900618	TANK	MIR4785 - TANK	100616364	10010		      492.74	      236.31	rs10208407-A	rs10208407	0	10208407	Intergenic	1	0.0080	2E-6	5.698970004336018	(Vigorous activity )	    .03	[NR] %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	9	101775328	GRIN3A	PPP3R2 - MTND3P4	5535	100873181		      180.33	       18.13	rs4523321-A	rs4523321	0	4523321	Intergenic	1	0.0040	2E-6	5.698970004336018	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.1	9	118033712	TLR4	TLR4 - TPT1P9	7099	389787		      316.22	       48.98	rs2416604-A	rs2416604	0	2416604	Intergenic	1	0.43	3E-6	5.522878745280337	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.31	12	121838349	HPD	SETD1B - HPD	23067	3242		        5.69	        1.18	rs4298948-G	rs4298948	0	4298948	Intergenic	1	0.025	3E-6	5.522878745280337	(Vigorous activity )	    .04	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.2	13	34331918	RFC3	VDAC1P12 - LINC00457	100874289	100874179		      248.61	      103.53	rs627871-A	rs627871	0	627871	Intergenic	1	0.0070	3E-6	5.522878745280337	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	2	7896129	LINC00299	LOC101929551			101929551			rs2193071-A	rs2193071	0	2193071	ncRNA	0	0.0070	4E-6	5.397940008672037	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p24.1	2	22901686	KLHL29	RNA5SP87 - KLHL29	100873320	114818		      562.68	      483.74	rs10189050-C	rs10189050	0	10189050	Intergenic	1	0.053	4E-6	5.397940008672037	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.2	20	54227260	PFDN4	PFDN4 - DOK5	5203	55816		        7.31	      248.47	rs2585417-A	rs2585417	0	2585417	Intergenic	1	0.337	5E-6	5.301029995663981	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.2	9	78468981	PSAT1	PSAT1 - MTND2P8	29968	100873178		      138.89	      272.74	rs10125737-A	rs10125737	0	10125737	Intergenic	1	0.294	6E-6	5.221848749616356	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p12.3	6	51234458	LOC646517	TRNAI25			100189401			rs7762246-G	rs7762246	0	7762246		0	0.11	6E-6	5.221848749616356	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.2	5	36900741	NIPBL	NIPBL			25836			rs293748-A	rs293748	0	293748	intron	0	0.158	7E-6	5.154901959985742	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.22	12	116761609	RNFT2	RNFT2			84900			rs12322695-A	rs12322695	0	12322695	intron	0	0.0090	7E-6	5.154901959985742	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.2	8	3332374	CSMD1	CSMD1			64478			rs2551043-G	rs2551043	0	2551043	intron	0	0.234	7E-6	5.154901959985742	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	7	18335622	HDAC9	HDAC9			9734			rs12666612-G	rs12666612	0	12666612	intron	0	0.088	8E-6	5.096910013008055	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q22.3	2	145347686	Intergenic	RPL6P5 - RNU7-2P	100270844	100147745		        9.62	      797.47	rs10445672-G	rs10445672	0	10445672	Intergenic	1	0.093	8E-6	5.096910013008055	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	10	10042603	TCEB1P3	HSP90AB7P - TCEB1P3	644495	644540		      318.10	      131.55	rs17147135-G	rs17147135	0	17147135	Intergenic	1	0.067	8E-6	5.096910013008055	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	16	24567137	RBBP6	RBBP6			5930			rs7195386-A	rs7195386	0	7195386	intron	0	0.477	9E-6	5.045757490560675	(Vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.2	10	22558510	PIP4K2A	PIP4K2A			5305			rs7094131-G	rs7094131	0	7094131	intron	0	0.392	9E-6	5.045757490560675	(Vigorous activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.33	19	48702915	FUT2	FUT2			2524			rs516246-A	rs516246	0	516246	intron	0	0.272	2E-6	5.698970004336018	(Vitamin B12 )	    .03	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p22.2	7	4434501	SDK1	RPL21P72 - FOXK1	100271181	221937		     1095.88	      247.80	rs314590-G	rs314590	0	314590	Intergenic	1	0.271	4E-6	5.397940008672037	(Vitamin B12 )	    .02	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q21.21	4	80614239	C4orf22	C4orf22			255119			rs1385890-G	rs1385890	0	1385890	intron	0	0.193	4E-6	5.397940008672037	(Vitamin B12 )	    .02	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.2	15	97207105	SPATA8	SPATA8 - LINC00923	145946	91948		      421.49	      535.51	rs1513859-G	rs1513859	0	1513859	Intergenic	1	0.011	7E-6	5.154901959985742	(Vitamin B12 )	    .03	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q31.3	5	141303324	SLC25A2	SLC25A2			83884			rs3749779-C	rs3749779	0	3749779	missense	0	0.165	7E-6	5.154901959985742	(Vitamin B12 )	    .02	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	2	242106609	LOC728323	FLJ38379 - CICP10	285097	100462787		      100.60	       13.27	rs12478296-A	rs12478296	0	12478296	Intergenic	1	0.446	8E-6	5.096910013008055	(Vitamin B12 )	    .03	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q24.3	17	70831948	KCNJ2	CALM2P1 - CASC17	100128390	101928165		      589.57	      265.83	rs1990193-C	rs1990193	0	1990193	Intergenic	1	0.385	9E-6	5.045757490560675	(Vitamin B12 )	    .03	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	1	240824454	RGS7	RGS7			6000			rs7544372-G	rs7544372	0	7544372	intron	0	0.211	9E-6	5.045757490560675	(Vitamin B12 )	    .03	[NR]  pmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q13.2	4	66435084	LOC728048	RPS23P3 - CENPC	100271091	1060		        3.56	     1037.19	rs2009314-G	rs2009314	0	2009314	Intergenic	1	0.296	5E-6	5.301029995663981	(Dinner intake )	    .03	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.12	10	120831861	BRWD2, WDR11	WDR11-AS1			283089			rs2919009-A	rs2919009	0	2919009	intron	0	0.12	5E-6	5.301029995663981	(Diet protein )	    .04	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.2	11	15599040	INSC	INSC - SOX6	387755	55553		      351.83	      367.41	rs17439299-G	rs17439299	0	17439299	Intergenic	1	0.044	6E-6	5.221848749616356	(Diet protein )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	2	11117379	FLJ33534	FLJ33534			285150			rs16857178-A	rs16857178	0	16857178	intron	0	0.043	9E-6	5.045757490560675	(Urinary creatinine )	    .04	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	5	150243802	CAMK2A	CAMK2A			815			rs4958456-A	rs4958456	0	4958456	intron	0	0.092	5E-7	6.30102999566398	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q24.1	15	74256432	CCDC33	CCDC33			80125			rs9783698-A	rs9783698	0	9783698	intron	0	0.15	1E-6	5.999999999999999	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	11	133930324	IGSF9B	IGSF9B			22997			rs1682859-C	rs1682859	0	1682859	intron	0	0.48	1E-6	5.999999999999999	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.2	14	54881400	GCH1	GCH1			2643			rs3783637-A	rs3783637	0	3783637	intron	0	0.121	1E-6	5.999999999999999	(Urinary free dopamine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q34	2	214323895	SPAG16	SPAG16			79582			rs16851771-G	rs16851771	0	16851771	intron	0	0.061	2E-6	5.698970004336018	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q22	17	54470764	TOM1L1	KIF2B - ISCA1P3	84643	100131092		      645.55	        6.94	rs6504909-G	rs6504909	0	6504909	Intergenic	1	0.166	3E-6	5.522878745280337	(Urinary free dopamine )	    .05	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.1	11	64545819	SLC22A11	MIR1237 - SLC22A11	100302280	55867		      177.12	        9.81	rs7124676-A	rs7124676	0	7124676	Intergenic	1	0.232	3E-6	5.522878745280337	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.3	13	108803487	MYO16	MYO16			23026			rs984300-G	rs984300	0	984300	intron	0	0.373	3E-6	5.522878745280337	(Urinary free dopamine )	    .02	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p23.1	2	31367919	XDH	XDH			7498			rs761926-G	rs761926	0	761926	intron	0	0.37	4E-6	5.397940008672037	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.3	7	21108059	ASS1P11	RPS26P30 - ASS1P11	100271111	340274		      264.09	      111.92	rs11974269-C	rs11974269	0	11974269	Intergenic	1	0.128	5E-6	5.301029995663981	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q11.2	14	22139542	TRAV8-7	LOC101929755			101929755			rs1474476-A	rs1474476	0	1474476	intron	0	0.108	5E-6	5.301029995663981	(Urinary free dopamine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q12.1	8	60192640	CA8	CA8			767			rs10098647-G	rs10098647	0	10098647	intron	0	0.3	5E-6	5.301029995663981	(Urinary free dopamine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.3	13	53716198	OLFM4	ZNF646P1 - LINC00558	100419854	100861552		      306.32	       99.22	rs2806731-G	rs2806731	0	2806731	Intergenic	1	0.202	5E-6	5.301029995663981	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.33	9	97553948	TMOD1	TMOD1			7111			rs1475545-A	rs1475545	0	1475545	intron	0	0.394	5E-6	5.301029995663981	(Urinary free dopamine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	10	10254156	TCEB1P3	TCEB1P3 - CUX2P1	644540	100126596		       79.38	        3.06	rs7097577-C	rs7097577	0	7097577	Intergenic	1	0.0060	6E-6	5.221848749616356	(Urinary free dopamine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.2	14	54881400	GCH1	GCH1			2643			rs3783637-A	rs3783637	0	3783637	intron	0	0.121	6E-8	7.221848749616355	(Urinary free dopamine: creatinine)	    .05	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p12.1	6	55608496	HMGCLL1	TRNAI25			100189401			rs11754509-G	rs11754509	0	11754509		0	0.013	3E-7	6.522878745280337	(Urinary free dopamine: creatinine)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.32	1	4384479	LOC644357	LINC01134 - AJAP1	100133612	55966		      469.03	      270.57	rs239339-A	rs239339	0	239339	Intergenic	1	0.095	3E-6	5.522878745280337	(Urinary free dopamine: creatinine)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q22	17	55442483	MMD	MMD - TMEM100	23531	55273		       20.49	      277.14	rs11653011-G	rs11653011	0	11653011	Intergenic	1	0.473	3E-6	5.522878745280337	(Urinary free dopamine: creatinine)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q21	16	59906284	LOC644649	LOC101927580			101927580			rs16961543-C	rs16961543	0	16961543	intron	0	0.237	6E-6	5.221848749616356	(Urinary free dopamine: creatinine)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q24.3	6	147613811	SAMD5	SAMD5 - SASH1	389432	23328		       43.79	      598.30	rs9377063-A	rs9377063	0	9377063	Intergenic	1	0.259	8E-6	5.096910013008055	(Urinary free dopamine: creatinine)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q12.1	8	59710789	CA8	NUDT15P1 - CA8	574532	767		      152.87	      478.08	rs12541902-A	rs12541902	0	12541902	Intergenic	1	0.154	9E-6	5.045757490560675	(Urinary free dopamine: creatinine)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.31	12	6326405	PLEKHG6	PLEKHG6			55200			rs10849441-G	rs10849441	0	10849441	intron	0	0.352	9E-6	5.045757490560675	(Urinary free dopamine: creatinine)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	7	19066916	TWIST1	TWIST1			7291			rs430-A	rs430	0	430	intron	0	0.016	4E-7	6.397940008672037	(Urinary free epinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	8	14659785	SGCZ	SGCZ			137868			rs11203649-A	rs11203649	0	11203649	intron	0	0.177	5E-7	6.30102999566398	(Urinary free epinephrine )	    .05	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.1	5	38955694	RICTOR, OSMR	RICTOR			253260			rs2043112-A	rs2043112	0	2043112	missense	0	0.389	8E-7	6.096910013008056	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.41	19	50916290	KLK4	KLK4 - KLK5	9622	25818		        5.55	       27.01	rs1701930-A	rs1701930	0	1701930	Intergenic	1	0.241	2E-6	5.698970004336018	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.1	5	39058254	RICTOR	RICTOR			253260			rs13160161-A	rs13160161	0	13160161	intron	0	0.382	2E-6	5.698970004336018	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q23.1	8	109466593	PKHD1L1	PKHD1L1			93035			rs73313124-A	rs73313124	0	73313124	missense	0	0.0030	3E-6	5.522878745280337	(Urinary free epinephrine )	    .02	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	10	9955027	TCEB1P3	HSP90AB7P - TCEB1P3	644495	644540		      230.52	      219.13	rs12263766-G	rs12263766	0	12263766	Intergenic	1	0.0040	3E-6	5.522878745280337	(Urinary free epinephrine )	    .02	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.2	12	54515360	NCKAP1L	NCKAP1L			3071			rs1629826-G	rs1629826	0	1629826	intron	0	0.319	3E-6	5.522878745280337	(Urinary free epinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q23.1	17	59946963	RPS6KB1, TUBD1, NDUFB8P2, RNFT1	RPS6KB1			6198			rs1051424-G	rs1051424	0	1051424	intron	0	0.127	3E-6	5.522878745280337	(Urinary free epinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	8	141726333	Intergenic	HNRNPA1P38 - MIR1302-7	100421384	100302147		      266.11	       59.91	rs4072286-C	rs4072286	0	4072286	Intergenic	1	0.461	4E-7	6.397940008672037	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.3	5	158748661	EBF1	EBF1			1879			rs13170526-C	rs13170526	0	13170526	intron	0	0.039	4E-6	5.397940008672037	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.1	12	74660813	LOC387869	ATXN7L3B - KCNC2	552889	3747		      119.36	      379.27	rs7311660-G	rs7311660	0	7311660	Intergenic	1	0.397	4E-6	5.397940008672037	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	16	4207312	SRL	SRL			6345			rs75825892-A	rs75825892	0	75825892	intron	0	0.099	5E-6	5.301029995663981	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q23.2	17	61245682	BCAS3	BCAS3			54828			rs17513268-G	rs17513268	0	17513268	intron	0	0.084	7E-6	5.154901959985742	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q28	3	188571909	LPP	LPP			4026			rs10937355-A	rs10937355	0	10937355	intron	0	0.367	9E-6	5.045757490560675	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.31	3	117437408	PTMAP8	PTMAP8 - IGSF11	728873	152404		      410.37	     1463.22	rs9870146-G	rs9870146	0	9870146	Intergenic	1	0.497	9E-6	5.045757490560675	(Eotaxin )	    .03	[NR] pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p22.1	3	43256197	SNRK	POMGNT2 - SNRK	84892	54861		      150.11	       30.32	rs6767019-C	rs6767019	0	6767019	Intergenic	1	0.085	9E-6	5.045757490560675	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p33	1	47789110	LOC388630	TRABD2B			388630			rs6588505-A	rs6588505	0	6588505	intron	0	0.322	9E-6	5.045757490560675	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	132321978	MOXD1	MOXD1			26002			rs589756-A	rs589756	0	589756	intron	0	0.129	2E-6	5.698970004336018	(VO2max )	    .04	[NR]  mL/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.2	12	10368790	KLRK1	LOC101928100			101928100			rs10743889-C	rs10743889	0	10743889	intron	0	0.4	6E-6	5.221848749616356	(VO2max )	    .04	[NR]  mL/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	16702524	RSU1	RSU1			6251			rs11254160-A	rs11254160	0	11254160	intron	0	0.138	6E-6	5.221848749616356	(VO2max )	    .04	[NR]  mL/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p13	7	43871283	MRPS24	MRPS24;URGCP-MRPS24			64951;100534592			rs10232743-A	rs10232743	0	10232743	nearGene-5;intron	0	0.016	7E-6	5.154901959985742	(VO2max )	    .04	[NR]  mL/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	5	89725761	Intergenic	MEF2C-AS1 - MIR3660	101929423	100500825		      693.38	      290.86	rs10514310-G	rs10514310	0	10514310	Intergenic	1	0.208	7E-6	5.154901959985742	(Waist:height)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p13	20	839019	FAM110A	FAM110A			83541			rs6108038-A	rs6108038	0	6108038	intron	0	0.04	7E-6	5.154901959985742	(Waist:height)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	132321978	MOXD1	MOXD1			26002			rs589756-A	rs589756	0	589756	intron	0	0.129	5E-6	5.301029995663981	(WC )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	6	39234381	KCNK5	TRNAI25			100189401			rs9366999-A	rs9366999	0	9366999		0	0.409	7E-6	5.154901959985742	(WC )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.33	12	131529661	Intergenic	RPS6P20 - RPS6P21	100271262	100271263		      236.49	      137.82	rs10773920-C	rs10773920	0	10773920	Intergenic	1	0.477	8E-6	5.096910013008055	(WC )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	10	89058620	FAS	FAS-AS1 - MIR4679-2	100302740	100616192		       65.65	        4.72	rs7920888-A	rs7920888	0	7920888	Intergenic	1	0.494	9E-6	5.045757490560675	(WC )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	4	25941129	C4orf52	SMIM20 - RBPJ	389203	3516		       11.25	      222.37	rs7654585-A	rs7654585	0	7654585	Intergenic	1	0.374	2E-7	6.698970004336019	(WC change )	    .04	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.1	8	10494798	UNQ9391, PRSS55	PRSS52P			100419209			rs4281086-C	rs4281086	0	4281086		0	0.304	4E-6	5.397940008672037	(WC change )	    .04	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.3	11	130759227	C11orf44, TRUB2, COQ4	C11orf44 - PPP1R10P1	283171	100422381		       41.88	       30.00	rs10894239-A	rs10894239	0	10894239	Intergenic	1	0.466	6E-6	5.221848749616356	(WC change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	2	70141791	C2orf42	MRPL36P1 - C2orf42	285003	54980		       38.71	        8.09	rs6708331-A	rs6708331	0	6708331	Intergenic	1	0.094	6E-6	5.221848749616356	(WC change )	    .04	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	1E-7	7	(Weight )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	16	82293200	MPHOSPH6	MPHOSPH6 - CDH13	10200	1012		      122.98	      333.59	rs11863065-A	rs11863065	0	11863065	Intergenic	1	0.03	4E-7	6.397940008672037	(Weight )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	16	6106325	RBFOX1	RBFOX1			54715			rs7403856-A	rs7403856	0	7403856	intron	0	0.287	2E-6	5.698970004336018	(Weight )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.3	15	58420004	LIPC	LIPC;LOC102724766			3990;102724766			rs11857380-C	rs11857380	0	11857380	intron;ncRNA	0	0.131	3E-6	5.522878745280337	(Weight )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.2	9	122810751	PDCL	OR1K1 - PDCL	392392	5082		        9.68	        7.35	rs16912238-G	rs16912238	0	16912238	Intergenic	1	0.0050	5E-6	5.301029995663981	(Weight )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	12	60341392	Intergenic	SLC16A7 - PGBD3P1	9194	267005		      551.54	      889.55	rs7974425-G	rs7974425	0	7974425	Intergenic	1	0.0050	6E-6	5.221848749616356	(Weight )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	7	77920589	PHTF2, RSBN1L	PHTF2			57157			rs12234571-C	rs12234571	0	12234571	intron	0	0.056	6E-6	5.221848749616356	(Diet protein )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p12	8	31317314	LOC642513	LOC101929492			101929492			rs2575029-A	rs2575029	0	2575029	intron	0	0.229	6E-6	5.221848749616356	(Diet protein )	    .03	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q12.1	22	26655335	MIAT	ISCA2P1 - MIAT	100287193	440823		       10.00	        2.15	rs739310-G	rs739310	0	739310	Intergenic	1	0.227	7E-6	5.154901959985742	(Diet protein )	    .01	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q36.3	7	158430414	PTPRN2	PTPRN2			5799			rs7786808-G	rs7786808	0	7786808	intron	0	0.445	8E-6	5.096910013008055	(Diet protein )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	2	175869870	KIAA1715	EXTL2P1 - KIAA1715	100287682	80856		       26.57	       55.81	rs4972489-C	rs4972489	0	4972489	Intergenic	1	0.366	8E-6	5.096910013008055	(Diet protein )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p32.2	1	56803848	C1orf168	C1orf168			199920			rs6662617-G	rs6662617	0	6662617	intron	0	0.271	9E-6	5.045757490560675	(Diet protein )	    .02	[NR]  %energy increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	5	149326736	AFAP1L1	AFAP1L1			134265			rs10044242-G	rs10044242	0	10044242	intron	0	0.0050	9E-6	5.045757490560675	(Diet protein )	    .02	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.3	13	35866962	DCLK1	DCLK1			9201			rs12428086-G	rs12428086	0	12428086	intron	0	0.374	5E-6	5.301029995663981	(Dinner intake )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.1	14	81312300	STON2	STON2			85439			rs6574644-G	rs6574644	0	6574644	intron	0	0.154	5E-6	5.301029995663981	(Urinary free norepinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p11.2	11	45506566	FLJ41423	FLJ41423 - HMGN2P37	399886	100874481		      118.06	        7.62	rs1488665-A	rs1488665	0	1488665	Intergenic	1	0.105	5E-6	5.301029995663981	(Urinary free norepinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q13.2	8	68818484	C8orf34	C8orf34			116328			rs16935110-T	rs16935110	0	16935110	UTR-3	0	0.116	5E-6	5.301029995663981	(Urinary free norepinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.31	20	56534248	C20orf107	FAM209B			388799			rs6024938-A	rs6024938	0	6024938	intron	0	0.427	6E-6	5.221848749616356	(Urinary free norepinephrine )	    .04	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.2	10	98824158	HPSE2	HPSE2			60495			rs2801405-G	rs2801405	0	2801405	intron	0	0.33	9E-6	5.045757490560675	(Urinary free norepinephrine )	    .03	[NR]  nmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p15	2	63284300	WDPCP	WDPCP			51057			rs2138798-A	rs2138798	0	2138798	intron	0	0.217	8E-7	6.096910013008056	(Urinary free norepinephrine: creatinine)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	12	32108305	BICD1	BICD1			636			rs1144713-A	rs1144713	0	1144713	intron	0	0.23	7E-6	5.154901959985742	(Urinary free norepinephrine: creatinine)	    .02	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q11.2	14	20793574	RNASE1	RNASE6 - RNASE1	6039	6035		       11.11	        7.78	rs10131141-G	rs10131141	0	10131141	Intergenic	1	0.28	8E-8	7.096910013008055	(Urinary nitrogen )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.23	7	77109274	FAM185A	FAM185BP			641808			rs3864639-G	rs3864639	0	3864639		0	0.088	2E-7	6.698970004336019	(Urinary nitrogen )	    .05	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.2	6	2565518	C6orf195	HMGN2P28 - C6orf195	100128372	154386		      223.02	       57.22	rs12195826-A	rs12195826	0	12195826	Intergenic	1	0.407	4E-7	6.397940008672037	(Urinary nitrogen )	    .05	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q22.3	2	144594254	ZEB2	ZEB2-AS1 - TEX41	100303491	401014		       73.36	       73.71	rs7355746-A	rs7355746	0	7355746	Intergenic	1	0.014	5E-7	6.30102999566398	(Urinary nitrogen )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.33	22	50237830	TUBGCP6, MOV10L1	TUBGCP6			85378			rs7511006-G	rs7511006	0	7511006	intron	0	0.244	1E-6	5.999999999999999	(Urinary nitrogen )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.1	18	30376477	DSC3	MIR302F - DSC3	100302131	1825		       77.52	      613.61	rs6508673-A	rs6508673	0	6508673	Intergenic	1	0.013	3E-6	5.522878745280337	(Urinary nitrogen )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	8	139985033	TRAPPC9	TRAPPC9			83696			rs1870805-A	rs1870805	0	1870805	intron	0	0.275	3E-6	5.522878745280337	(Urinary nitrogen )	    .03	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.33	19	50406508	POLD1	POLD1			5424			rs2230245-A	rs2230245	0	2230245	cds-synon	0	0.057	6E-6	5.221848749616356	(Urinary nitrogen )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.2	19	39679413	LGALS17A	LGALS17A			400696			rs8103033-G	rs8103033	0	8103033	ncRNA	0	0.458	8E-6	5.096910013008055	(Urinary nitrogen )	    .04	[NR]  g/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.23	4	147691337	PRMT10	PRMT9 - ARHGAP10	90826	79658		        7.11	       40.73	rs11731298-A	rs11731298	0	11731298	Intergenic	1	0.017	9E-6	5.045757490560675	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q28.1	4	127399753	LOC729424	RBM48P1 - INTU	132817	27152		      834.98	      233.18	rs1443170-G	rs1443170	0	1443170	Intergenic	1	0.0030	9E-6	5.045757490560675	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p22.1	2	38874067	DHX57	DHX57;MORN2			90957;729967			rs12479213-A	rs12479213	0	12479213	intron;nearGene-5	0	0.281	9E-6	5.045757490560675	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	132321978	MOXD1	MOXD1			26002			rs589756-A	rs589756	0	589756	intron	0	0.129	1E-7	7	(Fat free mass )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	3E-7	6.522878745280337	(Fat free mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	11	5242623	HBBP1	HBBP1			3044			rs16912210-G	rs16912210	0	16912210	intron	0	0.08	4E-7	6.397940008672037	(Fat free mass change )	    .05	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	16	11281009	PRM1	PRM1			5619			rs737008-A	rs737008	0	737008	cds-synon	0	0.352	1E-6	5.999999999999999	(Fat free mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.5	11	2287532	C11orf21	ASCL2 - C11orf21	430	29125		       16.58	        8.75	rs2521263-A	rs2521263	0	2521263	Intergenic	1	0.309	5E-6	5.301029995663981	(Fat free mass change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	2	239765595	LOC150935	LOC150935			150935			rs10207060-A	rs10207060	0	10207060	intron	0	0.45	6E-6	5.221848749616356	(Fat free mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.2	12	63052182	LOC121498	LDHAL6CP - RSL24D1P5	121498	100129941		       47.19	        3.09	rs10877945-A	rs10877945	0	10877945	Intergenic	1	0.304	7E-6	5.154901959985742	(Fat free mass change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	21	20448096	Intergenic	RPS3AP1 - LINC00320	101241875	387486		       17.33	      294.49	rs1735884-G	rs1735884	0	1735884	Intergenic	1	0.214	7E-6	5.154901959985742	(Fat free mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.2	10	61602229	C10orf107	TMEM26 - C10orf107	219623	219621		      148.78	       60.72	rs2814021-G	rs2814021	0	2814021	Intergenic	1	0.204	7E-6	5.154901959985742	(Fat free mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	2E-7	6.698970004336019	(Fat mass )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	14	94491377	SERPINA12	SERPINA12			145264			rs1998207-A	rs1998207	0	1998207	intron	0	0.22	1E-6	5.999999999999999	(Fat mass )	    .04	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q12	17	36949012	AATF	AATF			26574			rs2306658-G	rs2306658	0	2306658		0	0.249	2E-6	5.698970004336018	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	1	104056319	FTLP17	AMY1C - FTLP17	278	642337		      297.63	       97.21	rs3934285-A	rs3934285	0	3934285	Intergenic	1	0.214	2E-6	5.698970004336018	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	1	104056319	FTLP17	AMY1C - FTLP17	278	642337		      297.63	       97.21	rs3934285-A	rs3934285	0	3934285	Intergenic	1	0.214	2E-6	5.698970004336018	(Fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q23	15	69054606	NOX5	NOX5			79400			rs311904-A	rs311904	0	311904	intron	0	0.164	2E-6	5.698970004336018	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	5	92818872	Intergenic	PCBP2P3 - LDHBP3	100131236	100129283		      974.34	       21.97	rs17668565-G	rs17668565	0	17668565	Intergenic	1	0.403	2E-6	5.698970004336018	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.1	5	15364375	LOC391741	SEPHS2P1 - MARK2P5	100420190	100421485		      402.19	       19.86	rs1447276-A	rs1447276	0	1447276	Intergenic	1	0.116	2E-6	5.698970004336018	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.3	7	29178543	CHN2	CPVL			54504			rs245914-A	rs245914	0	245914	intron	0	0.149	3E-6	5.522878745280337	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	14	94491377	SERPINA12	SERPINA12			145264			rs1998207-A	rs1998207	0	1998207	intron	0	0.22	3E-6	5.522878745280337	(Fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	1	184708330	EDEM3	EDEM3			80267			rs3736757-A	rs3736757	0	3736757	cds-synon	0	0.473	6E-6	5.221848749616356	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	4	22019877	UM9(5), KCNIP4-IT1	KCNIP4-IT1 - GPR125	359822	166647		      166.69	      367.50	rs16872248-A	rs16872248	0	16872248	Intergenic	1	0.047	6E-6	5.221848749616356	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	16	26159619	HS3ST4	HSPE1P16 - C16orf82	171421	162083		       96.46	      907.28	rs9933429-A	rs9933429	0	9933429	Intergenic	1	0.305	7E-6	5.154901959985742	(Fat mass )	    .03	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.3	13	107832106	FAM155A	FAM155A;FAM155A-IT1			728215;100874375			rs2036707-A	rs2036707	0	2036707	intron;intron	0	0.142	7E-6	5.154901959985742	(Fat mass )	    .02	[NR]  % increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q21.3	5	105961828	LOC345571	RNA5SP189 - EFNA5	100873451	1946		       38.72	     1415.06	rs13189969-A	rs13189969	0	13189969	Intergenic	1	0.265	8E-6	5.096910013008055	(Fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.33	22	50538325	ODF3B	ODF3B - KLHDC7B	440836	113730		        5.75	        9.71	rs131788-A	rs131788	0	131788	Intergenic	1	0.189	9E-6	5.045757490560675	(Fat mass )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.2	9	18458070	ADAMTSL1	PUS7P1 - ADAMTSL1	100421790	92949		      303.85	       16.01	rs1340043-A	rs1340043	0	1340043	Intergenic	1	0.41	9E-6	5.045757490560675	(Fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	2	239824024	LOC150935	FLJ45964 - MIR4786	401040	100616417		      237.93	      118.99	rs4852140-A	rs4852140	0	4852140	Intergenic	1	0.328	8E-6	5.096910013008055	(Dinner intake )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p14.1	11	28212221	METTL15	METTL15			196074			rs11601602-G	rs11601602	0	11601602	intron	0	0.142	9E-6	5.045757490560675	(Dinner intake )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.1	14	67472766	TMEM229B	TMEM229B			161145			rs17104363-G	rs17104363	0	17104363	intron	0	0.05	5E-8	7.30102999566398	(Dinner intake, adj EER )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.2	7	25968432	NFE2L3	MIR148A - NFE2L3	406940	9603		       18.45	      183.80	rs745580-A	rs745580	0	745580	Intergenic	1	0.438	3E-7	6.522878745280337	(Dinner intake, adj EER )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	5	7155499	LOC442132	RNA5SP176 - ADCY2	100873438	108		      108.16	      240.73	rs4702435-G	rs4702435	0	4702435	Intergenic	1	0.118	5E-6	5.301029995663981	(Dinner intake, adj EER )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.31	6	33772248	LEMD2, MLN	LEMD2			221496			rs2296743-A	rs2296743	0	2296743	UTR-3	0	0.302	8E-6	5.096910013008055	(Dinner intake, adj EER )	    .03	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q13.2	5	71539065	BDP1	BDP1			55814			rs35131626-A	rs35131626	0	35131626	cds-synon	0	0.029	9E-6	5.045757490560675	(Dinner intake, adj EER )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.1	5	151215241	CCDC69	CCDC69			26112			rs979455-G	rs979455	0	979455	intron	0	0.201	9E-6	5.045757490560675	(Dinner intake, adj EER )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	6	33522105	BAK1	TRNAI25			100189401			rs9469457-A	rs9469457	0	9469457		0	0.021	9E-6	5.045757490560675	(Dinner intake, adj EER )	    .03	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.11	12	47529233	Intergenic	MIR4494 - RPAP3	100616478	79657		      164.96	      132.70	rs7307902-G	rs7307902	0	7307902	Intergenic	1	0.243	1E-6	5.999999999999999	(Dinner intake, adj TEE )	    .05	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p23	9	10139580	PTPRD	PTPRD			5789			rs294845-A	rs294845	0	294845	intron	0	0.239	7E-6	5.154901959985742	(Dinner intake, adj TEE )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q22.2	8	98101459	HRSP12	ERICH5 - HRSP12	203111	10247		        7.85	         .88	rs10107366-G	rs10107366	0	10107366	Intergenic	1	0.0080	6E-7	6.221848749616355	(Energy balance )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.11	19	33843009	KCTD15	KCTD15 - RPS4XP20	79047	100271386		       27.25	      179.56	rs166988-G	rs166988	0	166988	Intergenic	1	0.386	1E-6	5.999999999999999	(Energy balance )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.2	13	105596960	DAOA	DAOA - LINC00343	267012	144920		      105.93	      109.91	rs1549059-A	rs1549059	0	1549059	Intergenic	1	0.458	4E-6	5.397940008672037	(Energy balance )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q22.3	4	95546352	UNC5C	UNC5C			8633			rs11097470-A	rs11097470	0	11097470	intron	0	0.072	5E-6	5.301029995663981	(Energy balance )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.33	18	61599138	CDH20	RPL30P14 - LSM6P1	100129867	100129011		      193.86	       19.20	rs2032366-G	rs2032366	0	2032366	Intergenic	1	0.488	6E-6	5.221848749616356	(Energy balance )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.1	4	30066591	PCDH7	RPS3AP17 - PCDH7	100271130	5099		      102.84	      653.74	rs6818288-C	rs6818288	0	6818288	Intergenic	1	0.124	6E-6	5.221848749616356	(Energy balance )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q22.3	2	143932550	GTDC1	ARHGAP15 - GTDC1	55843	79712		      164.20	       12.39	rs1011397-G	rs1011397	0	1011397	Intergenic	1	0.197	8E-6	5.096910013008055	(Energy balance )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p12	8	36601936	FKSG2	RPL23P10 - RNA5SP264	100270962	100873517		       20.35	      162.51	rs7814403-G	rs7814403	0	7814403	Intergenic	1	0.462	2E-6	5.698970004336018	(Energy intake )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	2	218216574	ARPC2	ARPC2;LOC101928487			10109;101928487			rs13403276-G	rs13403276	0	13403276	nearGene-5;ncRNA	0	0.027	3E-6	5.522878745280337	(Energy intake )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	11	83545825	DLG2	DLG2			1740			rs2116483-A	rs2116483	0	2116483	intron	0	0.416	8E-6	5.096910013008055	(Energy intake )	    .02	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	2	175869870	KIAA1715	EXTL2P1 - KIAA1715	100287682	80856		       26.57	       55.81	rs4972489-C	rs4972489	0	4972489	Intergenic	1	0.366	8E-6	5.096910013008055	(Energy intake )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q23.3	5	129387003	ADAMTS19	LOC102723654			102723654			rs10077875-G	rs10077875	0	10077875	intron	0	0.448	9E-6	5.045757490560675	(Energy intake )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	2	203225007	NBEAL1	NBEAL1			65065			rs16839626-A	rs16839626	0	16839626	intron	0	0.0060	2E-7	6.698970004336019	(Energy storage )	    .05	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	13	93580876	GPC6	GPC6			10082			rs7998314-A	rs7998314	0	7998314	intron	0	0.487	7E-7	6.154901959985743	(Energy storage )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	12	32864109	PKP2	PKP2			5318			rs1454933-C	rs1454933	0	1454933	intron	0	0.169	3E-6	5.522878745280337	(Energy storage )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	16	74944720	WDR59	WDR59			79726			rs2042415-A	rs2042415	0	2042415	intron	0	0.146	3E-6	5.522878745280337	(Energy storage )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	12396784	CAMK1D	CAMK1D			57118			rs10906142-A	rs10906142	0	10906142	intron	0	0.236	4E-6	5.397940008672037	(Energy storage )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	1	111565047	ADORA3	ADORA3			140			rs10776733-A	rs10776733	0	10776733	nearGene-5	0	0.36	7E-6	5.154901959985742	(Energy storage )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	19	54109321	TFPT	TFPT			29844			rs254262-A	rs254262	0	254262	intron	0	0.468	8E-6	5.096910013008055	(Energy storage )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.3	10	130748997	Intergenic	GLRX3 - MIR378C	10539	100422867		      568.62	      213.59	rs4750829-A	rs4750829	0	4750829	Intergenic	1	0.185	9E-6	5.045757490560675	(Energy storage )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p22.1	3	43426403	ANO10, CCDC13, CCBP2, HIGD1A, FAM198A, SNRK	ANO10			55129			rs7650267-G	rs7650267	0	7650267	intron	0	0.093	2E-7	6.698970004336019	(Eotaxin )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p22.1	3	42867668	CCBP2, CCDC13, HIGD1A, FAM198A	ACKR2			1238			rs3919627-G	rs3919627	0	3919627	nearGene-3	0	0.353	2E-7	6.698970004336019	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.31	12	83802750	RPL6P25	RPL6P25 - SLC6A15	401725	55117		      650.52	     1056.74	rs11116045-G	rs11116045	0	11116045	Intergenic	1	0.269	2E-7	6.698970004336019	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	14	65138010	MAX	MIR4706 - RPL21P7	100616490	145370		       93.24	      128.59	rs17102423-A	rs17102423	0	17102423	Intergenic	1	0.2	4E-7	6.397940008672037	(Eotaxin )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q21	11	93359971	CCDC67	CCDC67			159989			rs12098946-A	rs12098946	0	12098946	intron	0	0.0050	4E-6	5.397940008672037	(Folate )	    .02	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q21	11	93970883	HEPHL1	VSTM5 - HPRTP4	387804	100128522		      120.38	       19.79	rs11825709-G	rs11825709	0	11825709	Intergenic	1	0.034	4E-6	5.397940008672037	(Folate )	    .02	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.13	8	121609669	HAS2	RPL35AP19 - HAS2	100271322	3037		      229.13	        3.36	rs11995252-G	rs11995252	0	11995252	Intergenic	1	0.047	5E-6	5.301029995663981	(Folate )	    .03	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	11	117980337	IL10RA	TMPRSS13 - IL10RA	84000	3587		       50.88	        6.05	rs58603829-A	rs58603829	0	58603829	Intergenic	1	0.028	6E-6	5.221848749616356	(Folate )	    .03	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q13.1	15	29132552	FAM189A1	FAM189A1			23359			rs2636061-A	rs2636061	0	2636061	intron	0	0.0070	7E-6	5.154901959985742	(Folate )	    .02	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	16	77749683	NUDT7	NUDT7 - VAT1L	283927	57687		        7.42	       38.90	rs4888671-A	rs4888671	0	4888671	Intergenic	1	0.152	7E-6	5.154901959985742	(Folate )	    .03	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	16	27203663	JMJD5	KDM8			79831			rs16976587-A	rs16976587	0	16976587	intron	0	0.0060	9E-6	5.045757490560675	(Folate )	    .02	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	19	58480634	ZNF446	ZNF446			55663			rs58632700-A	rs58632700	0	58632700	missense	0	0.077	1E-7	7	(Free T3 )	    .05	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q25.3	10	113755361	C10orf81	PLEKHS1			79949			rs3981351-G	rs3981351	0	3981351	intron	0	0.276	1E-6	5.999999999999999	(Free T3 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.32	19	47072459	ZC3H4	ZC3H4			23211			rs3745618-A	rs3745618	0	3745618	cds-synon	0	0.06	2E-6	5.698970004336018	(Free T3 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	5	177307647	MXD3	MXD3			83463			rs72813183-A	rs72813183	0	72813183	missense	0	0.062	2E-6	5.698970004336018	(Free T3 )	    .05	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p22.1	2	40435406	SLC8A1	SLC8A1			6546			rs4629203-G	rs4629203	0	4629203	intron	0	0.429	3E-6	5.522878745280337	(Free T3 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	15087403	ACBD7	ACBD7			414149			rs11259474-G	rs11259474	0	11259474	intron	0	0.109	5E-6	5.301029995663981	(Free T3 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.21	20	23288000	NXT1	RNA5SP478 - NXT1	100873720	29107		      127.03	       62.74	rs4815191-A	rs4815191	0	4815191	Intergenic	1	0.202	6E-6	5.221848749616356	(Free T3 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p21.1	8	28933642	HMBOX1	HMBOX1			79618			rs2221894-G	rs2221894	0	2221894	intron	0	0.228	6E-6	5.221848749616356	(Free T3 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p16.2	2	53275637	ASB3	MIR4431 - ASB3	100616431	51130		      573.02	      394.34	rs996712-G	rs996712	0	996712	Intergenic	1	0.34	8E-6	5.096910013008055	(Free T3 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q22.1	4	92399876	GRID2	GRID2			2895			rs7666831-A	rs7666831	0	7666831	intron	0	0.0040	8E-6	5.096910013008055	(Free T3 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	1	237192685	RYR2	RYR2			6262			rs268786-C	rs268786	0	268786	intron	0	0.014	8E-6	5.096910013008055	(Free T3 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.11	9	128322349	TRUB2, COQ4	TRUB2;COQ4			26995;51117			rs11539570-A	rs11539570	0	11539570	cds-synon;nearGene-5	0	0.0070	7E-6	5.154901959985742	(WC change )	    .02	[NR] cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.2	14	98773979	C14orf177	C14orf177 - RPL3P4	283598	326307		       56.21	      198.84	rs11623713-A	rs11623713	0	11623713	Intergenic	1	0.043	8E-6	5.096910013008055	(Free T3 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q13	6	74161515	CD109	LOC101928516			101928516			rs6912405-G	rs6912405	0	6912405	intron	0	0.462	9E-6	5.045757490560675	(Free T3 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.33	12	130012927	TMEM132D	TRNAI29P - FZD10-AS1	100189474	440119		      781.20	      138.67	rs1624802-A	rs1624802	0	1624802	Intergenic	1	0.49	5E-7	6.30102999566398	(Ft4 )	    .02	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	11	131455352	NTM	NTM			50863			rs11601906-A	rs11601906	0	11601906	intron	0	0.021	2E-6	5.698970004336018	(Ft4 )	    .04	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.23	20	19821544	RIN2	RIN2			54453			rs6046346-A	rs6046346	0	6046346	intron	0	0.0090	5E-6	5.301029995663981	(Ft4 )	    .04	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q13.2	4	69106745	UGT2B7	UGT2B7			7364			rs4356975-A	rs4356975	0	4356975	intron	0	0.295	2E-7	6.698970004336019	(Gestational age )	    .07	[NR]  wk increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.13	8	125522429	TRIB1	TRIB1 - LINC00861	10221	100130231		       84.02	      400.09	rs921720-A	rs921720	0	921720	Intergenic	1	0.414	3E-6	5.522878745280337	(Gestational age )	    .05	[NR]  wk increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.1	9	88645647	LOC286238	LOC286238			286238			rs17054265-A	rs17054265	0	17054265	intron	0	0.17	4E-6	5.397940008672037	(Gestational age )	    .05	[NR]  wk increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	132321978	MOXD1	MOXD1			26002			rs589756-A	rs589756	0	589756	intron	0	0.129	9E-6	5.045757490560675	(Weight )	    .02	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q36.2	7	152972755	ACTR3B	ACTR3B - DPP6	57180	1804		       85.04	      775.43	rs11981919-A	rs11981919	0	11981919	Intergenic	1	0.01	9E-6	5.045757490560675	(Weight )	    .02	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.2	7	36506461	AOAH	ANLN - AOAH	54443	313		       52.67	        6.48	rs7777593-A	rs7777593	0	7777593	Intergenic	1	0.404	1E-6	5.999999999999999	(Weight change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	2	203225007	NBEAL1	NBEAL1			65065			rs16839626-A	rs16839626	0	16839626	intron	0	0.0060	3E-6	5.522878745280337	(Weight change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	19	54109321	TFPT	TFPT			29844			rs254262-A	rs254262	0	254262	intron	0	0.468	3E-6	5.522878745280337	(Weight change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.3	10	130748997	Intergenic	GLRX3 - MIR378C	10539	100422867		      568.62	      213.59	rs4750829-A	rs4750829	0	4750829	Intergenic	1	0.185	4E-6	5.397940008672037	(Weight change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.2	1	178502087	RASAL2	LINC00083 - TEX35	400797	84066		        2.45	       10.99	rs12760731-A	rs12760731	0	12760731	Intergenic	1	0.062	5E-6	5.301029995663981	(Weight change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p12	4	47406692	GABRB1	GABRB1			2560			rs6289-G	rs6289	0	6289	cds-synon	0	0.169	5E-6	5.301029995663981	(Weight change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q11.2	14	22313945	TRAV40	LOC101929755;LOC102724753			101929755;102724753			rs11845134-A	rs11845134	0	11845134	intron;intron	0	0.181	6E-6	5.221848749616356	(Weight change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	9	102679835	CYLC2	ZYG11AP1 - CYLC2	100131879	1539		       67.87	      315.48	rs2210533-A	rs2210533	0	2210533	Intergenic	1	0.11	7E-6	5.154901959985742	(Weight change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	16	74944720	WDR59	WDR59			79726			rs2042415-A	rs2042415	0	2042415	intron	0	0.146	8E-6	5.096910013008055	(Weight change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	5	92818872	Intergenic	PCBP2P3 - LDHBP3	100131236	100129283		      974.34	       21.97	rs17668565-G	rs17668565	0	17668565	Intergenic	1	0.403	5E-7	6.30102999566398	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	16	82293200	MPHOSPH6	MPHOSPH6 - CDH13	10200	1012		      122.98	      333.59	rs11863065-A	rs11863065	0	11863065	Intergenic	1	0.03	1E-6	5.999999999999999	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	12	61841052	FAM19A2	FAM19A2			338811			rs2198776-A	rs2198776	0	2198776	intron	0	0.284	5E-6	5.301029995663981	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q22.2	15	62998446	LOC100287243	MIR190A - TPM1	406965	7168		      174.41	       44.19	rs12595433-A	rs12595433	0	12595433	Intergenic	1	0.464	5E-6	5.301029995663981	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.3	7	29178543	CHN2	CPVL			54504			rs245914-A	rs245914	0	245914	intron	0	0.149	6E-6	5.221848749616356	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	10	89058620	FAS	FAS-AS1 - MIR4679-2	100302740	100616192		       65.65	        4.72	rs7920888-A	rs7920888	0	7920888	Intergenic	1	0.494	7E-6	5.154901959985742	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q29	3	196351556	UBXD7	TM4SF19 - UBXN7	116211	26043		       13.14	        1.93	rs6774852-G	rs6774852	0	6774852	Intergenic	1	0.195	7E-6	5.154901959985742	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	6	20567310	CDKAL1	CDKAL1			54901			rs9460521-A	rs9460521	0	9460521	intron	0	0.01	8E-6	5.096910013008055	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	9	7558261	LOC392285	PPIAP33			392285			rs4400445-A	rs4400445	0	4400445		0	0.124	9E-6	5.045757490560675	(Weight z-score )	    .02	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	12	60341392	Intergenic	SLC16A7 - PGBD3P1	9194	267005		      551.54	      889.55	rs7974425-G	rs7974425	0	7974425	Intergenic	1	0.0050	9E-6	5.045757490560675	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	5	90914007	GPR98	GPR98			84059			rs10074525-G	rs10074525	0	10074525	intron	0	0.13	9E-6	5.045757490560675	(Weight z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q34	13	110276815	COL4A1	COL4A1			1282			rs494558-G	rs494558	0	494558	intron	0	0.078	5E-8	7.30102999566398	(Weight z-score change )	    .05	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q27	4	120941346	PRDM5	SETP12 - NDNF	100419158	79625		       44.70	       94.28	rs10018902-A	rs10018902	0	10018902	Intergenic	1	0.0080	1E-6	5.999999999999999	(Weight z-score change )	    .04	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.3	11	129828961	TMEM45B	TMEM45B			120224			rs10894147-A	rs10894147	0	10894147	intron	0	0.104	7E-6	5.154901959985742	(Weight z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	19	54109321	TFPT	TFPT			29844			rs254262-A	rs254262	0	254262	intron	0	0.468	8E-6	5.096910013008055	(Weight z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.3	9	135136831	OLFM1	OLFM1 - C9orf62	10439	157927		       15.65	      206.42	rs3849221-A	rs3849221	0	3849221	Intergenic	1	0.409	1E-6	5.999999999999999	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	1	242792261	PLD5, RSL24D1P4	RSL24D1P4 - CICP21	391183	100420263		       16.96	      257.52	rs12751297-A	rs12751297	0	12751297	Intergenic	1	0.262	1E-6	5.999999999999999	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	1	202422615	PPP1R12B	PPP1R12B			4660			rs12739262-A	rs12739262	0	12739262	intron	0	0.262	1E-6	5.999999999999999	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.4	11	71134158	SHANK2	SHANK2			22941			rs35198051-A	rs35198051	0	35198051	intron	0	0.262	1E-6	5.999999999999999	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.1	5	40237272	Intergenic	LINC00603 - PTGER4	102467077	5734		      183.95	      442.66	rs36019094-A	rs36019094	0	36019094	Intergenic	1	0.262	1E-6	5.999999999999999	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	19	406934	C2CD4C	C2CD4C			126567			rs12978500-C	rs12978500	0	12978500	intron	0	0.274	1E-6	5.999999999999999	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p13	11	34641414	EHF	EHF			26298			rs286905-A	rs286905	0	286905	intron	0	0.311	4E-6	5.397940008672037	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	5	149833893	PPARGC1B	PPARGC1B			133522			rs32576-G	rs32576	0	32576	intron	0	0.391	5E-6	5.301029995663981	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	1	201661827	NAV1	NAV1			89796			rs586688-A	rs586688	0	586688	intron	0	0.092	8E-6	5.096910013008055	(Estradiol )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p12	2	75565017	FAM176A	EVA1A			84141			rs17011478-A	rs17011478	0	17011478	intron	0	0.176	6E-6	5.221848749616356	(Head circumference )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p13	4	43050169	GRXCR1	GRXCR1 - RPS2P21	389207	441013		       19.51	      359.84	rs9997524-C	rs9997524	0	9997524	Intergenic	1	0.0050	7E-6	5.154901959985742	(Head circumference )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	14	65821192	FUT8	MIR625 - NCOA4P1	693210	326605		      350.01	       56.84	rs7494064-G	rs7494064	0	7494064	Intergenic	1	0.048	8E-6	5.096910013008055	(Head circumference )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q25.3	17	78872532	TIMP2	TIMP2			7077			rs9900972-A	rs9900972	0	9900972	intron	0	0.139	8E-6	5.096910013008055	(Head circumference )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	16706611	RSU1	RSU1			6251			rs7916663-A	rs7916663	0	7916663	intron	0	0.184	4E-7	6.397940008672037	(Height )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.2	11	124085759	LOH11CR2A	OR10D5P - OR10D4P	79488	390266		       30.03	        7.68	rs1893767-G	rs1893767	0	1893767	Intergenic	1	0.126	4E-6	5.397940008672037	(Height )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.1	15	48755931	CEP152	CEP152			22995			rs16961557-G	rs16961557	0	16961557	missense	0	0.0090	5E-6	5.301029995663981	(Height )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	18	8966146	RPS4XP19	MTCL1 - RPS4XP19	23255	645573		      133.37	       53.85	rs10502386-A	rs10502386	0	10502386	Intergenic	1	0.373	6E-6	5.221848749616356	(Height )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.1	10	58795818	BICC1	BICC1			80114			rs11006263-G	rs11006263	0	11006263	intron	0	0.03	7E-6	5.154901959985742	(Height )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	19	54193224	TSEN34, MBOAT7	TSEN34			79042			rs7595-G	rs7595	0	7595	cds-synon	0	0.389	3E-8	7.522878745280337	(Height change )	    .05	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p13	20	2594723	TMC2	TMC2			117532			rs6050469-A	rs6050469	0	6050469	intron	0	0.011	2E-6	5.698970004336018	(Height change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	7809281	LOC729852	RPA3OS			729852			rs10259199-G	rs10259199	0	10259199	intron	0	0.091	2E-6	5.698970004336018	(Height change )	    .04	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	10	122092312	TACC2	TACC2			10579			rs11200392-A	rs11200392	0	11200392	intron	0	0.368	3E-6	5.522878745280337	(Height change )	    .04	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	16	28041642	GSG1L	GSG1L			146395			rs205391-A	rs205391	0	205391	intron	0	0.096	7E-6	5.154901959985742	(Height change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	5	177592261	TMED9	TMED9			54732			rs57960711-G	rs57960711	0	57960711	missense	0	0.033	8E-6	5.096910013008055	(Height change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	5	173925760	CPEB4	CPEB4			80315			rs1106693-G	rs1106693	0	1106693	intron	0	0.039	2E-6	5.698970004336018	(Height z-score )	    .02	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.2	21	40621781	DSCAM	DSCAM;DSCAM-IT1			1826;100874326			rs3804024-G	rs3804024	0	3804024	intron;intron	0	0.035	3E-6	5.522878745280337	(Height z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.3	10	133538649	CYP2E1	CYP2E1			1571			rs2249694-A	rs2249694	0	2249694	intron	0	0.225	3E-6	5.522878745280337	(Height z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	16706611	RSU1	RSU1			6251			rs7916663-A	rs7916663	0	7916663	intron	0	0.184	5E-6	5.301029995663981	(Height z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.2	20	9798081	PAK7	PAK7			57144			rs6056891-G	rs6056891	0	6056891	intron	0	0.268	8E-6	5.096910013008055	(Height z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.1	10	95470005	SORBS1	SORBS1			10580			rs579342-A	rs579342	0	579342	intron	0	0.041	4E-6	5.397940008672037	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.1	2	184571535	ZNF804A	MIR548AE1 - ZNF804A	100616305	91752		      192.49	       26.83	rs17430279-G	rs17430279	0	17430279	Intergenic	1	0.152	4E-6	5.397940008672037	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.12	16	12614351	SNX29	FLJ32790 - CPPED1	642696	55313		      524.05	       45.45	rs1560104-G	rs1560104	0	1560104	Intergenic	1	0.47	4E-6	5.397940008672037	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.1	18	27587981	RBM22P1	PA2G4P3 - CDH2	619212	1000		      134.17	      362.99	rs1420956-A	rs1420956	0	1420956	Intergenic	1	0.332	5E-6	5.301029995663981	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q12	19	30452770	ZNF536	ZNF536			9745			rs33436-A	rs33436	0	33436	intron	0	0.442	5E-6	5.301029995663981	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.2	16	79329917	Intergenic	RNA5SP431 - MAF	100873681	4094		       65.34	      263.93	rs7191820-A	rs7191820	0	7191820	Intergenic	1	0.486	6E-6	5.221848749616356	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	11	19562955	NAV2	NAV2			89797			rs10500856-G	rs10500856	0	10500856	intron	0	0.0090	7E-6	5.154901959985742	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	2	70470535	TGFA	TGFA;TGFA-IT1			7039;100874273			rs3771514-A	rs3771514	0	3771514	intron;intron	0	0.386	8E-6	5.096910013008055	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q24.2	6	143673062	PHACTR2	PHACTR2			9749			rs9403521-G	rs9403521	0	9403521	intron	0	0.172	8E-6	5.096910013008055	(Height z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	16	6106325	RBFOX1	RBFOX1			54715			rs7403856-A	rs7403856	0	7403856	intron	0	0.287	9E-6	5.045757490560675	(Fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	2	203225007	NBEAL1	NBEAL1			65065			rs16839626-A	rs16839626	0	16839626	intron	0	0.0060	4E-7	6.397940008672037	(Fat mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	13	93580876	GPC6	GPC6			10082			rs7998314-A	rs7998314	0	7998314	intron	0	0.487	4E-7	6.397940008672037	(Fat mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	12396784	CAMK1D	CAMK1D			57118			rs10906142-A	rs10906142	0	10906142	intron	0	0.236	1E-6	5.999999999999999	(Fat mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.1	4	7422024	SORCS2	SORCS2			57537			rs7694661-A	rs7694661	0	7694661	intron	0	0.406	3E-6	5.522878745280337	(Fat mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q15	6	87667331	ORC3, SLC35A1, RARS2	ORC3			23595			rs28381552-G	rs28381552	0	28381552	UTR-3	0	0.025	4E-6	5.397940008672037	(Fat mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	16	74944720	WDR59	WDR59			79726			rs2042415-A	rs2042415	0	2042415	intron	0	0.146	5E-6	5.301029995663981	(Fat mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	5	178413381	COL23A1	COL23A1			91522			rs10070303-A	rs10070303	0	10070303	intron	0	0.249	6E-6	5.221848749616356	(Fat mass change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	1	111565047	ADORA3	ADORA3			140			rs10776733-A	rs10776733	0	10776733	nearGene-5	0	0.36	7E-6	5.154901959985742	(Fat mass change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.2	13	49717706	KPNA3	KPNA3			3839			rs9535307-A	rs9535307	0	9535307	intron	0	0.082	8E-6	5.096910013008055	(Fat mass change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.1	13	94853008	Intergenic	LOC101927284			101927284			rs11070098-G	rs11070098	0	11070098	intron	0	0.204	8E-6	5.096910013008055	(Fat mass change )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	12	32864109	PKP2	PKP2			5318			rs1454933-C	rs1454933	0	1454933	intron	0	0.169	9E-6	5.045757490560675	(Fat mass change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p24.3	6	7652484	SNRNP48	RPL29P1 - BMP6	134756	654		       31.60	       74.29	rs7739678-G	rs7739678	0	7739678	Intergenic	1	0.089	9E-6	5.045757490560675	(Fat mass change )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	13	93580876	GPC6	GPC6			10082			rs7998314-A	rs7998314	0	7998314	intron	0	0.487	4E-7	6.397940008672037	(Fat mass deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	12396784	CAMK1D	CAMK1D			57118			rs10906142-A	rs10906142	0	10906142	intron	0	0.236	1E-6	5.999999999999999	(Fat mass deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	12	32864109	PKP2	PKP2			5318			rs1454933-C	rs1454933	0	1454933	intron	0	0.169	3E-6	5.522878745280337	(Fat mass deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q15	6	87620224	ORC3, SLC35A1, RARS2	ORC3			23595			rs13213285-A	rs13213285	0	13213285	intron	0	0.034	4E-6	5.397940008672037	(Fat mass deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.1	13	94853008	Intergenic	LOC101927284			101927284			rs11070098-G	rs11070098	0	11070098	intron	0	0.204	5E-6	5.301029995663981	(Fat mass deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	2	203225007	NBEAL1	NBEAL1			65065			rs16839626-A	rs16839626	0	16839626	intron	0	0.0060	2E-7	6.698970004336019	(Fat mass deposition )	    .05	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q14.1	6	80771637	LOC442232	RPL17P25 - FAM46A	442232	55603		      397.03	      974.09	rs6902257-A	rs6902257	0	6902257	Intergenic	1	0.015	7E-6	5.154901959985742	(Fat mass deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	1	111565047	ADORA3	ADORA3			140			rs10776733-A	rs10776733	0	10776733	nearGene-5	0	0.36	7E-6	5.154901959985742	(Fat mass deposition )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	16	74944720	WDR59	WDR59			79726			rs2042415-A	rs2042415	0	2042415	intron	0	0.146	8E-6	5.096910013008055	(Fat mass deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	12	60416871	Intergenic	SLC16A7 - PGBD3P1	9194	267005		      627.02	      814.07	rs2655898-G	rs2655898	0	2655898	Intergenic	1	0.246	8E-6	5.096910013008055	(Fat mass deposition )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.1	4	7422024	SORCS2	SORCS2			57537			rs7694661-A	rs7694661	0	7694661	intron	0	0.406	9E-6	5.045757490560675	(Fat mass deposition )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	7	96001884	DYNC1I1	DYNC1I1			1780			rs1488515-C	rs1488515	0	1488515	intron	0	0.225	1E-6	5.999999999999999	(Fat oxidation )	    .04	[NR]  %NPEE increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	7825120	LOC729852	RPA3OS			729852			rs12702661-A	rs12702661	0	12702661	intron	0	0.273	2E-6	5.698970004336018	(Fat oxidation )	    .04	[NR]  %NPEE increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.3	11	68789314	CPT1A	CPT1A			1374			rs2924679-A	rs2924679	0	2924679	intron	0	0.094	4E-6	5.397940008672037	(Fat oxidation )	    .03	[NR]  %NPEE increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q44	1	246497934	SMYD3	SMYD3			64754			rs11800820-A	rs11800820	0	11800820	intron	0	0.164	4E-6	5.397940008672037	(Fat oxidation )	    .03	[NR]  %NPEE increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	9	7274696	JMJD2C	ACTG1P14 - RPL4P5	100418910	158345		      439.12	      202.26	rs1887867-G	rs1887867	0	1887867	Intergenic	1	0.405	6E-6	5.221848749616356	(Fat oxidation )	    .03	[NR]  %NPEE increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.13	20	49403281	KCNB1	KCNB1			3745			rs6063399-A	rs6063399	0	6063399	intron	0	0.45	8E-6	5.096910013008055	(Fat oxidation )	    .03	[NR]  %NPEE increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.13	9	132469020	C9orf171	C9orf171			389799			rs569434-G	rs569434	0	569434	intron	0	0.248	9E-6	5.045757490560675	(Fat oxidation )	    .03	[NR]  %NPEE increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q15.1	15	40042375	SRP14	SRP14-AS1			100131089			rs2412475-A	rs2412475	0	2412475	intron	0	0.463	2E-6	5.698970004336018	(Folate )	    .03	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q21	11	93187236	SLC36A4	SLC36A4			120103			rs12296063-A	rs12296063	0	12296063	intron	0	0.0030	2E-6	5.698970004336018	(Folate )	    .03	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q14	15	39746232	FSIP1	FSIP1			161835			rs8033957-G	rs8033957	0	8033957	intron	0	0.449	2E-6	5.698970004336018	(Folate )	    .03	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	4	11673037	Intergenic	RNA5SP156 - HSP90AB2P	100873422	391634		      258.88	     1663.35	rs7671189-A	rs7671189	0	7671189	Intergenic	1	0.375	3E-6	5.522878745280337	(Folate )	    .03	[NR]  nmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	18	78897779	Intergenic	LINC01029 - SALL3	101927715	27164		      904.05	       82.50	rs9951602-A	rs9951602	0	9951602	Intergenic	1	0.189	9E-6	5.045757490560675	(IGF1 bound )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q35.2	4	186236880	KLKB1	KLKB1			3818			rs3733402-G	rs3733402	0	3733402	missense	0	0.337	9E-8	7.045757490560674	(IGF1 free )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q11.2	3	96963418	EPHA6	EPHA6			285220			rs7650621-C	rs7650621	0	7650621	intron	0	0.0060	2E-6	5.698970004336018	(IGF1 free )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	9	28359784	LINGO2	LINGO2			158038			rs16912725-A	rs16912725	0	16912725	intron	0	0.0040	2E-6	5.698970004336018	(IGF1 free )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q23.3	12	104424414	CHST11	EID3 - CHST11	493861	50515		      119.21	       32.50	rs11112046-A	rs11112046	0	11112046	Intergenic	1	0.179	3E-6	5.522878745280337	(IGF1 free )	    .02	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	5	175355116	DRD1	ARL2BPP6 - DRD1	100874421	1812		       63.86	       85.56	rs251925-A	rs251925	0	251925	Intergenic	1	0.285	5E-6	5.301029995663981	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q22.1	7	100342684	PMS2L1	STAG3L5P-PVRIG2P-PILRB			101752399			rs13228694-A	rs13228694	0	13228694	intron	0	0.043	6E-6	5.221848749616356	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p12.1	3	84153052	Intergenic	SRRM1P2 - LINC00971	100420834	440970		      214.01	      485.35	rs4522784-C	rs4522784	0	4522784	Intergenic	1	0.01	7E-6	5.154901959985742	(IGF1 free )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.33	12	1947197	DCP1B	DCP1B			196513			rs10505725-A	rs10505725	0	10505725	intron	0	0.28	8E-6	5.096910013008055	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.1	20	15196934	MACROD2	MACROD2			140733			rs199307-G	rs199307	0	199307	intron	0	0.241	8E-6	5.096910013008055	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q11.2	3	96609983	RPL18AP8	MIR8060 - MTRNR2L12	102465864	100463498		      249.94	        7.20	rs6796026-A	rs6796026	0	6796026	Intergenic	1	0.0080	8E-6	5.096910013008055	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q21.23	4	83800661	MAG1, AGPAT9	LOC101928978			101928978			rs4693646-A	rs4693646	0	4693646	intron	0	0.407	9E-6	5.045757490560675	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	15	89624877	C15orf42	TICRR;KIF7			90381;374654			rs894157-G	rs894157	0	894157	missense;intron	0	0.273	9E-6	5.045757490560675	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.32	12	4196717	CCND2	RPL18P9 - CCND2	100129645	894		       76.76	       77.02	rs12827476-A	rs12827476	0	12827476	Intergenic	1	0.452	9E-6	5.045757490560675	(IGF1 free )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.32	3	118443776	IGSF11	PTMAP8 - IGSF11	728873	152404		     1416.74	      456.85	rs10511378-G	rs10511378	0	10511378	Intergenic	1	0.112	1E-6	5.999999999999999	(IGFBP-1 )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.1	5	16913746	MYO10	MYO10			4651			rs17614462-A	rs17614462	0	17614462	intron	0	0.045	2E-6	5.698970004336018	(IGFBP-1 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q44	1	244413415	ADSS	ADSS			159			rs3102460-G	rs3102460	0	3102460	intron	0	0.358	4E-6	5.397940008672037	(IGFBP-1 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.2	20	53652456	ZNF217	ZNF217 - RNU7-14P	7764	100147762		       43.67	       16.24	rs2041278-A	rs2041278	0	2041278	Intergenic	1	0.472	6E-6	5.221848749616356	(IGFBP-1 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q12.1	2	105294056	TGFBRAP1	TGFBRAP1			9392			rs1030877-G	rs1030877	0	1030877	intron	0	0.35	6E-6	5.221848749616356	(IGFBP-1 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p33	1	50141357	ELAVL4	ELAVL4			1996			rs12092053-C	rs12092053	0	12092053	intron	0	0.0040	6E-6	5.221848749616356	(IGFBP-1 )	    .02	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	11	21647747	NELL1	RNA5SP337 - ANO5	100873600	203859		      263.84	      544.92	rs10833583-A	rs10833583	0	10833583	Intergenic	1	0.061	7E-6	5.154901959985742	(IGFBP-1 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q21.2	14	44637429	FSCB	LOC101927351			101927351			rs12884395-G	rs12884395	0	12884395	intron	0	0.178	9E-6	5.045757490560675	(IGFBP-1 )	    .02	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p11.2	17	17164868	MPRIP	MPRIP			23164			rs61744862-A	rs61744862	0	61744862	missense	0	0.041	7E-8	7.154901959985742	(IGFBP-3 )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	20	61933124	CDH4	CDH4			1002			rs6061910-A	rs6061910	0	6061910	cds-synon	0	0.063	1E-7	7	(IGFBP-3 )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.2	12	56080359	ERBB3	ERBB3			2065			rs34379766-A	rs34379766	0	34379766	missense	0	0.064	5E-7	6.30102999566398	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.12	20	44742679	KCNK15, WISP2, RIMS4	WISP2 - KCNK15	8839	60598		       14.87	        3.17	rs11696845-A	rs11696845	0	11696845	Intergenic	1	0.355	5E-7	6.30102999566398	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.1	14	58899597	LOC440181	LOC102723742			102723742			rs405460-A	rs405460	0	405460	intron	0	0.418	6E-7	6.221848749616355	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q34	13	110137885	COL4A1	LOC101927712			101927712			rs641862-G	rs641862	0	641862	intron	0	0.062	7E-7	6.154901959985743	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	16	11128381	CLEC16A	CLEC16A			23274			rs78394940-A	rs78394940	0	78394940	intron	0	0.063	9E-7	6.045757490560675	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p14.3	3	57794109	SLMAP	SLMAP			7871			rs6768930-G	rs6768930	0	6768930	intron	0	0.396	5E-6	5.301029995663981	(Gestational age )	    .05	[NR]  wk increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	4	166422787	TLL1	RNA5SP170 - SPOCK3	100873435	50859		      369.50	      310.60	rs17635075-G	rs17635075	0	17635075	Intergenic	1	0.076	8E-6	5.096910013008055	(Gestational age )	    .05	[NR]  wk increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p15.3	10	2382362	Intergenic	LINC00701 - PFKP	399708	5214		       67.29	      685.11	rs12571964-A	rs12571964	0	12571964	Intergenic	1	0.21	9E-6	5.045757490560675	(Gestational age )	    .05	[NR]  wk increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q12.3	5	65051794	SDCCAG10, CWC27	CWC27 - ADAMTS6	10283	11174		       33.03	       96.94	rs266590-G	rs266590	0	266590	Intergenic	1	0.485	9E-6	5.045757490560675	(Gestational age )	    .05	[NR]  wk increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.13	1	17918213	ACTL8	ACTL8 - IGSF21	81569	84966		       91.15	      189.53	rs6686929-G	rs6686929	0	6686929	Intergenic	1	0.486	3E-6	5.522878745280337	(Ghrelin )	    .03	[NR]  pg/100 µL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.1	4	173680897	MORF4	RANP6 - FBXO8	100128266	26269		       46.51	      555.76	rs11727767-A	rs11727767	0	11727767	Intergenic	1	0.447	7E-6	5.154901959985742	(Ghrelin )	    .03	[NR]  pg/100 µL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.3	6	135219242	MYB	MYB			4602			rs210937-A	rs210937	0	210937	intron	0	0.345	8E-6	5.096910013008055	(Ghrelin )	    .04	[NR]  pg/100 µL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.3	11	92975544	MTNR1B, LOC642791	MTNR1B			4544			rs10830963-G	rs10830963	0	10830963	intron	0	0.205	4E-8	7.397940008672037	(GLU )	    .05	[NR] mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p14.3	3	56764467	ARHGEF3	ARHGEF3			50650			rs13100723-A	rs13100723	0	13100723	intron	0	0.119	1E-6	5.999999999999999	(GLU )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q33	7	135794825	UNQ1940, FAM180A	FAM180A - LUZP6	389558	767558		       45.96	      131.93	rs12707249-A	rs12707249	0	12707249	Intergenic	1	0.292	3E-6	5.522878745280337	(GLU )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.1	9	104769675	NIPSNAP3B	NIPSNAP3B			55335			rs2472476-G	rs2472476	0	2472476	intron	0	0.267	3E-6	5.522878745280337	(GLU )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q12	19	29417200	LOC284395	LOC284395			284395			rs10425935-G	rs10425935	0	10425935	intron	0	0.099	3E-6	5.522878745280337	(GLU )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.3	14	75449761	JDP2	JDP2			122953			rs84044-A	rs84044	0	84044	intron	0	0.175	7E-6	5.154901959985742	(GLU )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.32	22	48234372	Intergenic	LINC00898 - MIR3201	400932	100422916		      602.80	       39.99	rs13054085-A	rs13054085	0	13054085	Intergenic	1	0.236	2E-6	5.698970004336018	(Hcy )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.11	13	21340975	Intergenic	MIPEPP3;LINC00539			650794;100652865			rs17356983-G	rs17356983	0	17356983	intron;intron	0	0.158	2E-6	5.698970004336018	(Hcy )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	1	114064742	SYT6	RPL13AP10 - SYT6	100132906	148281		       61.40	       24.55	rs79079833-G	rs79079833	0	79079833	Intergenic	1	0.011	2E-6	5.698970004336018	(Hcy )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.32	18	322522	COLEC12	COLEC12			81035			rs621636-A	rs621636	0	621636	intron	0	0.131	3E-6	5.522878745280337	(Hcy )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.3	21	43067294	CBS	CBS			875			rs2851391-G	rs2851391	0	2851391	intron	0	0.365	4E-6	5.397940008672037	(Hcy )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.2	8	3459464	CSMD1	CSMD1			64478			rs17394429-A	rs17394429	0	17394429	intron	0	0.11	7E-6	5.154901959985742	(Hcy )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.22	4	147401235	EDNRA	MIR548G - RPL31P26	100313938	100130537		       56.52	       24.70	rs1429107-A	rs1429107	0	1429107	Intergenic	1	0.086	8E-6	5.096910013008055	(Hcy )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.3	11	89379482	NOX4	NOX4			50507			rs10830265-A	rs10830265	0	10830265	intron	0	0.187	8E-6	5.096910013008055	(Hcy )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.3	4	154074311	DCHS2	SFRP2 - DCHS2	6423	54798		      285.24	      160.06	rs2404916-G	rs2404916	0	2404916	Intergenic	1	0.334	9E-6	5.045757490560675	(Hcy )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.33	5	618471	CEP72	CEP72			55722			rs7726839-G	rs7726839	0	7726839	intron	0	0.282	1E-6	5.999999999999999	(HDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q21.33	13	69345267	KLHL1	SNRPFP3 - SRSF1P1	100874422	100128625		      243.21	       62.86	rs2593525-C	rs2593525	0	2593525	Intergenic	1	0.01	2E-6	5.698970004336018	(HDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q21.33	13	69449553	KLHL1	SRSF1P1 - KLHL1	100128625	57626		       40.82	      251.04	rs352236-G	rs352236	0	352236	Intergenic	1	0.01	2E-6	5.698970004336018	(HDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q23.1	8	107028124	Intergenic	ABRA - HMGB1P46	137735	100419978		      257.88	      145.08	rs7004587-A	rs7004587	0	7004587	Intergenic	1	0.0070	3E-6	5.522878745280337	(HDL )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.32	18	905124	ADCYAP1	ADCYAP1			116			rs1893154-A	rs1893154	0	1893154	intron	0	0.401	3E-6	5.522878745280337	(HDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.1	14	68519440	RAD51L1	RAD51B			5890			rs11624164-A	rs11624164	0	11624164	intron	0	0.177	5E-6	5.301029995663981	(HDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	9	29783991	LINGO2, LOC401497	PDK1P1 - ME2P1	100421194	286239		      465.04	       39.72	rs10969375-G	rs10969375	0	10969375	Intergenic	1	0.14	6E-6	5.221848749616356	(HDL )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q26.31	3	172667903	NCEH1	NCEH1			57552			rs11712263-A	rs11712263	0	11712263	intron	0	0.135	8E-6	5.096910013008055	(HDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	6	40472761	LRFN2	LRFN2			57497			rs9296335-A	rs9296335	0	9296335	intron	0	0.033	8E-6	5.096910013008055	(HDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	6	20109361	MBOAT1	MBOAT1			154141			rs2457335-G	rs2457335	0	2457335	intron	0	0.191	2E-6	5.698970004336018	(Head circumference )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.5	11	831883	EFCAB4A	CD151;EFCAB4A			977;283229			rs35694355-A	rs35694355	0	35694355	nearGene-5;UTR-3	0	0.0050	3E-6	5.522878745280337	(Head circumference )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	1	184792231	FAM129A	FAM129A			116496			rs682331-G	rs682331	0	682331	UTR-3	0	0.437	4E-6	5.397940008672037	(Head circumference )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p15.1	10	5876469	ANKRD16	ANKRD16			54522			rs17145612-A	rs17145612	0	17145612	intron	0	0.0080	6E-6	5.221848749616356	(Head circumference )	    .01	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q42.12	1	225713304	ENAH	LOC102723834			102723834			rs10915864-G	rs10915864	0	10915864	intron	0	0.264	2E-6	5.698970004336018	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.2	10	23145815	MSRB2	YWHAZP3 - PTF1A	143371	256297		        6.04	       46.72	rs7893600-A	rs7893600	0	7893600	Intergenic	1	0.329	3E-6	5.522878745280337	(IL6 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q31.1	5	135878988	SLC25A48	SLC25A48			153328			rs7734448-A	rs7734448	0	7734448	intron	0	0.0050	3E-6	5.522878745280337	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.13	9	132771634	AK8	AK8			158067			rs10901212-C	rs10901212	0	10901212	intron	0	0.089	5E-6	5.301029995663981	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.1	13	80070483	Intergenic	LINC01080 - SPRY2	101515984	10253		       43.82	      265.49	rs12431307-G	rs12431307	0	12431307	Intergenic	1	0.412	5E-6	5.301029995663981	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	1	183297047	NMNAT2	NMNAT2			23057			rs4652795-G	rs4652795	0	4652795	intron	0	0.471	5E-6	5.301029995663981	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	10	26195225	MYO3A	MYO3A			53904			rs12764197-G	rs12764197	0	12764197	intron	0	0.304	6E-6	5.221848749616356	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	18	24526812	LOC390843	HRH4 - RAC1P1	59340	387612		       46.86	      158.67	rs7235440-G	rs7235440	0	7235440	Intergenic	1	0.46	6E-6	5.221848749616356	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q22.1	8	95503660	C8orf37	LOC100616530			100616530			rs1909881-G	rs1909881	0	1909881	intron	0	0.089	7E-6	5.154901959985742	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q31.33	7	125751591	LOC646841	RPL31P39 - GRM8	641790	2918		      450.69	      687.01	rs1419607-G	rs1419607	0	1419607	Intergenic	1	0.372	7E-6	5.154901959985742	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q13	2	111618386	ANAPC1	DBF4P2 - RPL34P8	100420180	100270999		       58.45	       56.64	rs1448190-A	rs1448190	0	1448190	Intergenic	1	0.381	8E-6	5.096910013008055	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	15	92142548	SLCO3A1	SLCO3A1			28232			rs2238355-A	rs2238355	0	2238355	intron	0	0.435	8E-6	5.096910013008055	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	10	71362188	SLC29A3	SLC29A3			55315			rs1084004-A	rs1084004	0	1084004	cds-synon	0	0.377	8E-7	6.096910013008056	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p32.1	1	59296796	FGGY	FGGY			55277			rs835367-G	rs835367	0	835367	nearGene-5	0	0.371	2E-6	5.698970004336018	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	10	71036120	PCBD1	PCBD1 - UNC5B	5092	219699		      147.34	      176.42	rs1891159-A	rs1891159	0	1891159	Intergenic	1	0.491	3E-6	5.522878745280337	(INS )	    .04	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	14	64774231	SPTB	SPTB			6710			rs11158559-A	rs11158559	0	11158559	intron	0	0.148	6E-6	5.221848749616356	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	11	134269886	ACAD8	GLB1L3			112937			rs478881-A	rs478881	0	478881	missense	0	0.141	7E-6	5.154901959985742	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	1	26293158	UBXN11	UBXN11			91544			rs6598955-A	rs6598955	0	6598955	intron	0	0.256	7E-6	5.154901959985742	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.31	22	47792504	RP11-191L9.1	LOC284930			284930			rs5767992-A	rs5767992	0	5767992	intron	0	0.067	8E-6	5.096910013008055	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	8602724	NXPH1	NXPH1			30010			rs10245124-G	rs10245124	0	10245124	intron	0	0.177	8E-6	5.096910013008055	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.3	14	55951401	LINC00520	LINC00520 - PELI2	645687	57161		      154.73	      166.97	rs10151037-A	rs10151037	0	10151037	Intergenic	1	0.24	8E-6	5.096910013008055	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q23	3	139354169	MRPS22	MRPS22			56945			rs1044826-G	rs1044826	0	1044826	intron	0	0.412	9E-6	5.045757490560675	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q12.1	11	57598250	SERPING1	SERPING1			710			rs28362944-G	rs28362944	0	28362944	UTR-5	0	0.022	9E-6	5.045757490560675	(INS )	    .03	[NR]  µU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	18	75824756	Intergenic	SMIM21 - ZNF516	284274	9658		      397.12	      532.93	rs9956878-A	rs9956878	0	9956878	Intergenic	1	0.427	2E-6	5.698970004336018	(LDL )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	4	167218229	SPOCK3	SPOCK3			50859			rs9312517-G	rs9312517	0	9312517	intron	0	0.228	3E-6	5.522878745280337	(LDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.2	7	91643029	MTERF	NIPA2P1 - MTERF	100132321	7978		      321.84	      229.68	rs1476442-C	rs1476442	0	1476442	Intergenic	1	0.221	3E-6	5.522878745280337	(LDL )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	6	17632830	NUP153	NUP153			9972			rs2274136-G	rs2274136	0	2274136	missense	0	0.228	3E-6	5.522878745280337	(LDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q24.3	17	70637924	KCNJ2	CALM2P1 - CASC17	100128390	101928165		      395.55	      459.85	rs16975985-G	rs16975985	0	16975985	Intergenic	1	0.079	5E-6	5.301029995663981	(LDL )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.32	4	15543787	CC2D2A	CC2D2A			57545			rs9918079-A	rs9918079	0	9918079	intron	0	0.115	6E-6	5.221848749616356	(LDL )	    .04	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	16	82293200	MPHOSPH6	MPHOSPH6 - CDH13	10200	1012		      122.98	      333.59	rs11863065-A	rs11863065	0	11863065	Intergenic	1	0.03	1E-7	7	(Hip circumference )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	3E-6	5.522878745280337	(Hip circumference )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	12	60341392	Intergenic	SLC16A7 - PGBD3P1	9194	267005		      551.54	      889.55	rs7974425-G	rs7974425	0	7974425	Intergenic	1	0.0050	6E-6	5.221848749616356	(Hip circumference )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	5	92818872	Intergenic	PCBP2P3 - LDHBP3	100131236	100129283		      974.34	       21.97	rs17668565-G	rs17668565	0	17668565	Intergenic	1	0.403	7E-6	5.154901959985742	(Hip circumference )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	10	89058620	FAS	FAS-AS1 - MIR4679-2	100302740	100616192		       65.65	        4.72	rs7920888-A	rs7920888	0	7920888	Intergenic	1	0.494	7E-6	5.154901959985742	(Hip circumference )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	9	7558261	LOC392285	PPIAP33			392285			rs4400445-A	rs4400445	0	4400445		0	0.124	8E-6	5.096910013008055	(Hip circumference )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.3	1	162119528	NOS1AP	NOS1AP			9722			rs76662883-A	rs76662883	0	76662883	intron	0	0.0060	9E-6	5.045757490560675	(Hip circumference )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q12	17	36949012	AATF	AATF			26574			rs2306658-G	rs2306658	0	2306658		0	0.249	9E-6	5.045757490560675	(Hip circumference )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	1	84327290	SAMD13	SAMD13			148418			rs315553-C	rs315553	0	315553	intron	0	0.173	4E-6	5.397940008672037	(Hip circumference change )	    .05	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.1	14	61267922	TMEM30B	SLC38A6 - TMEM30B	145389	161291		      184.19	        9.45	rs7141238-C	rs7141238	0	7141238	Intergenic	1	0.155	3E-6	5.522878745280337	(Hip circumference change )	    .04	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.3	9	289061	DOCK8	DOCK8			81704			rs6476030-G	rs6476030	0	6476030	intron	0	0.086	3E-6	5.522878745280337	(Hip circumference change )	    .02	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q13.2	4	68301953	YTHDC1	TMPRSS11B - APOOP4	132724	100128725		       56.26	        2.25	rs939207-A	rs939207	0	939207	Intergenic	1	0.142	3E-6	5.522878745280337	(Hip circumference change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.3	13	99840906	CLYBL	CLYBL			171425			rs9513675-G	rs9513675	0	9513675	intron	0	0.464	5E-6	5.301029995663981	(Hip circumference change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q12	6	63093283	GLULD1, LGSN	KHDRBS2 - FKBP1C	202559	642489		      807.09	      118.16	rs789942-C	rs789942	0	789942	Intergenic	1	0.412	5E-6	5.301029995663981	(Hip circumference change )	    .04	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q22.3	11	106652498	GUCY1A2	AASDHPPT - GUCY1A2	60496	2977		      553.81	       21.51	rs12364992-G	rs12364992	0	12364992	Intergenic	1	0.176	6E-6	5.221848749616356	(Hip circumference change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.2	1	178522744	C1orf49	TEX35			84066			rs12023718-G	rs12023718	0	12023718	intron	0	0.072	6E-6	5.221848749616356	(Hip circumference change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q23.1	12	98940751	ANKS1B	ANKS1B			56899			rs483610-G	rs483610	0	483610	intron	0	0.387	7E-6	5.154901959985742	(Hip circumference change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.33	5	2724248	Intergenic	CTD-2194D22.4 - IRX2	101929081	153572		      823.76	       21.92	rs2173226-G	rs2173226	0	2173226	Intergenic	1	0.342	8E-6	5.096910013008055	(Hip circumference change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q21.3	5	106083812	LOC345571	RNA5SP189 - EFNA5	100873451	1946		      160.70	     1293.08	rs6894797-G	rs6894797	0	6894797	Intergenic	1	0.047	9E-6	5.045757490560675	(Hip circumference change )	    .03	[NR]  cm/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	10	71362188	SLC29A3, PCBD1	SLC29A3			55315			rs1084004-A	rs1084004	0	1084004	cds-synon	0	0.377	2E-6	5.698970004336018	(HOMA-IR)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	1	26293158	UBXN11	UBXN11			91544			rs6598955-A	rs6598955	0	6598955	intron	0	0.256	4E-6	5.397940008672037	(HOMA-IR)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p32.1	1	59387647	FGGY	FGGY			55277			rs7534016-G	rs7534016	0	7534016	intron	0	0.255	5E-6	5.301029995663981	(HOMA-IR)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	8602724	NXPH1	NXPH1			30010			rs10245124-G	rs10245124	0	10245124	intron	0	0.177	8E-6	5.096910013008055	(HOMA-IR)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q23	3	139354169	MRPS22	MRPS22			56945			rs1044826-G	rs1044826	0	1044826	intron	0	0.412	8E-6	5.096910013008055	(HOMA-IR)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.2	7	15296311	AGMO	AGMO			392636			rs12531027-G	rs12531027	0	12531027	intron	0	0.034	3E-7	6.522878745280337	(HRmax )	    .04	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.3	21	42082652	UMODL1	UMODL1			89766			rs220299-G	rs220299	0	220299	intron	0	0.373	4E-7	6.397940008672037	(HRmax )	    .05	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	7	82153198	CACNA2D1	CACNA2D1			781			rs6942458-G	rs6942458	0	6942458	intron	0	0.219	6E-7	6.221848749616355	(HRmax )	    .05	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.2	12	76083176	NAP1L1	NAP1L1			4673			rs1368578-A	rs1368578	0	1368578	intron	0	0.072	1E-6	5.999999999999999	(HRmax )	    .04	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.3	4	1297325	MAEA, KIAA1530	MAEA;LOC101928676			10296;101928676			rs13108904-A	rs13108904	0	13108904	intron;ncRNA	0	0.357	2E-6	5.698970004336018	(HRmax )	    .04	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.2	13	105182819	DAOA	RPL7P45 - DAOA-AS1	100271225	282706		      367.68	      276.24	rs16966085-A	rs16966085	0	16966085	Intergenic	1	0.096	3E-6	5.522878745280337	(HRmax )	    .04	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q12.3	22	35381625	HMOX1	HMOX1			3162			rs2071748-A	rs2071748	0	2071748	intron	0	0.273	3E-6	5.522878745280337	(HRmax )	    .05	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q24.1	6	139338875	CITED2	TXLNB - CITED2	167838	10370		       14.86	       33.38	rs11155053-A	rs11155053	0	11155053	Intergenic	1	0.059	9E-6	5.045757490560675	(HRmax )	    .03	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.3	14	88906407	TTC8	TTC8 - TRNAA17	123016	100189117		       28.41	       72.69	rs17124955-G	rs17124955	0	17124955	Intergenic	1	0.086	9E-6	5.045757490560675	(HRmax )	    .05	[NR]  bpm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.1	6	44772212	SUPT3H	TRNAI25			100189401			rs1342371-A	rs1342371	0	1342371		0	0.088	2E-6	5.698970004336018	(IGF1 bound )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q12.1	5	59801097	PDE4D	PDE4D			5144			rs2963826-A	rs2963826	0	2963826	intron	0	0.325	2E-6	5.698970004336018	(IGF1 bound )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q27.1	3	184125347	HSP90AA5P	HSP90AA5P - EIF2B5	730211	8893		        7.34	        9.68	rs6806377-A	rs6806377	0	6806377	Intergenic	1	0.487	1E-6	5.999999999999999	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.3	5	177307647	MXD3	MXD3			83463			rs72813183-A	rs72813183	0	72813183	missense	0	0.062	2E-6	5.698970004336018	(MCP1 )	    .05	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	16	11128381	CLEC16A	CLEC16A			23274			rs78394940-A	rs78394940	0	78394940	intron	0	0.063	2E-6	5.698970004336018	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q21.1	3	123284451	ADCY5	ADCY5			111			rs13317079-A	rs13317079	0	13317079	UTR-3	0	0.042	2E-6	5.698970004336018	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q11.21	22	20241019	RTN4R	RTN4R			65078			rs701428-G	rs701428	0	701428	nearGene-3	0	0.472	2E-6	5.698970004336018	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.3	8	2003134	KBTBD11	KBTBD11			9920			rs13263558-A	rs13263558	0	13263558	UTR-3	0	0.062	3E-6	5.522878745280337	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q11.2	17	33066684	ACCN1	ASIC2			40			rs17808461-A	rs17808461	0	17808461	intron	0	0.117	4E-6	5.397940008672037	(MCP1 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	20	61933124	CDH4	CDH4			1002			rs6061910-A	rs6061910	0	6061910	cds-synon	0	0.063	4E-6	5.397940008672037	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q22.1	16	67659894	PARD6A	PARD6A;ACD			50855;65057			rs7204371-A	rs7204371	0	7204371	nearGene-5;intron	0	0.048	4E-6	5.397940008672037	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.3	9	136371144	CARD9	CARD9			64170			rs34971035-A	rs34971035	0	34971035	cds-synon	0	0.064	5E-6	5.301029995663981	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	1	205211282	DSTYK	DSTYK			25778			rs76872152-A	rs76872152	0	76872152	missense	0	0.062	5E-6	5.301029995663981	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q22	1	155126429	EFNA1	EFNA1			1942			rs11264330-A	rs11264330	0	11264330	nearGene-5	0	0.06	5E-6	5.301029995663981	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.11	12	47793471	HDAC7	HDAC7			51564			rs75365750-G	rs75365750	0	75365750	missense	0	0.043	5E-6	5.301029995663981	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.2	1	159492591	OR10J5, OR10J1	OR10J4 - OR10J5	391121	127385		       59.46	       42.49	rs4325129-G	rs4325129	0	4325129	Intergenic	1	0.148	6E-6	5.221848749616356	(MCP1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q22.1	16	70471456	FUK	FUK			197258			rs11861805-T	rs11861805	0	11861805	intron	0	0.049	6E-6	5.221848749616356	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p22.1	7	4799634	RADIL	RADIL			55698			rs2306921-A	rs2306921	0	2306921	missense	0	0.06	6E-6	5.221848749616356	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p13.2	17	4490203	SPNS3	SPNS3 - SPNS2	201305	124976		        2.00	        8.63	rs333119-A	rs333119	0	333119	Intergenic	1	0.0070	6E-6	5.221848749616356	(MCP1 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.3	11	128567058	ETS1	ETS1			2113			rs7117932-A	rs7117932	0	7117932	intron	0	0.287	8E-6	5.096910013008055	(MCP1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	7	98295242	BAIAP2L1	BRI3;BAIAP2L1			25798;55971			rs77443149-A	rs77443149	0	77443149	intron;intron	0	0.039	8E-6	5.096910013008055	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	4	164957183	C4orf39	FAM218A;TRIM61			152756;391712			rs3733418-G	rs3733418	0	3733418	missense;intron	0	0.197	9E-6	5.045757490560675	(MCP1 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q22.1	8	96357406	PTDSS1	PTDSS1 - SDC2	9791	6383		       22.86	      135.95	rs2640806-A	rs2640806	0	2640806	Intergenic	1	0.317	5E-6	5.301029995663981	(Methionine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.1	10	83110320	NRG3	NRG3 - MARK2P15	10718	100533794		      123.14	      202.05	rs7915137-G	rs7915137	0	7915137	Intergenic	1	0.333	7E-6	5.154901959985742	(Methionine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	11	20601477	SLC6A5	SLC6A5			9152			rs2241941-A	rs2241941	0	2241941	cds-synon	0	0.339	8E-6	5.096910013008055	(Methionine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q22.1	11	98852486	CNTN5	RNA5SP347 - CNTN5	100873609	53942		     1194.90	      168.49	rs11217223-G	rs11217223	0	11217223	Intergenic	1	0.09	1E-6	5.999999999999999	(Moderate activity )	    .04	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	6	150804115	PLEKHG1	PLEKHG1			57480			rs10046456-A	rs10046456	0	10046456	intron	0	0.04	2E-6	5.698970004336018	(Moderate activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.32	6	32195971	NOTCH4, GPSM3	NOTCH4;GPSM3			4855;63940			rs13215567-A	rs13215567	0	13215567	cds-synon;nearGene-5	0	0.049	1E-6	5.999999999999999	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q15.1	15	40240667	PAK6	PAK6			56924			rs4924439-A	rs4924439	0	4924439	intron	0	0.051	1E-6	5.999999999999999	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.3	20	6770442	BMP2	BMP2			650			rs2273074-A	rs2273074	0	2273074	missense	0	0.043	1E-6	5.999999999999999	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.21	1	15744515	TMEM82	TMEM82			388595			rs59905655-A	rs59905655	0	59905655	missense	0	0.043	2E-6	5.698970004336018	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.11	10	119206827	GRK5	GRK5;GRK5-IT1			2869;101927868			rs1397615-A	rs1397615	0	1397615	nearGene-5;nearGene-5	0	0.044	2E-6	5.698970004336018	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	8	143720286	MAPK15	MAPK15			225689			rs35925379-A	rs35925379	0	35925379	missense	0	0.052	2E-6	5.698970004336018	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.2	11	125407598	PKNOX2	PKNOX2			63876			rs7112365-A	rs7112365	0	7112365	intron	0	0.07	2E-6	5.698970004336018	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q13	2	113132796	IL1RN	IL1RN			3557			rs4252023-A	rs4252023	0	4252023	cds-synon	0	0.058	2E-6	5.698970004336018	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q11.21	10	43260306	RASGEF1A	RASGEF1A			221002			rs28461806-G	rs28461806	0	28461806	intron	0	0.049	2E-6	5.698970004336018	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p12.3	7	46713893	EPS15P1	HMGN1P19 - EPS15P1	100874445	55380		       78.95	       68.00	rs700750-A	rs700750	0	700750	Intergenic	1	0.487	3E-6	5.522878745280337	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.1	8	8719869	CLDN23	CLDN23 - MFHAS1	137075	9258		       15.76	       63.49	rs13256369-G	rs13256369	0	13256369	Intergenic	1	0.413	3E-6	5.522878745280337	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.1	11	111540883	LAYN	LAYN			143903			rs11213935-A	rs11213935	0	11213935	missense	0	0.078	4E-6	5.397940008672037	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.2	19	13135154	NACC1	NACC1			112939			rs10408126-A	rs10408126	0	10408126	intron	0	0.034	4E-6	5.397940008672037	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	16	2057112	TSC2	TSC2			7249			rs45502703-G	rs45502703	0	45502703	missense	0	0.052	5E-6	5.301029995663981	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.32	1	2521540	PANK4	PANK4			55229			rs12073504-G	rs12073504	0	12073504	intron	0	0.033	5E-6	5.301029995663981	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	12	118016864	RFC5	RFC5			5985			rs5745796-A	rs5745796	0	5745796	missense	0	0.032	5E-6	5.301029995663981	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p21.31	3	48466176	TREX1	TREX1			11277			rs3135940-A	rs3135940	0	3135940	intron	0	0.045	6E-6	5.221848749616356	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	19	3613474	C19orf29	CACTIN;CACTIN-AS1			58509;404665			rs12977510-A	rs12977510	0	12977510	missense;ncRNA	0	0.046	6E-6	5.221848749616356	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p11.2	7	54607180	RPL31P35	GS1-18A18.1 - RPL31P35	285878	100271199		       35.45	       49.14	rs679830-A	rs679830	0	679830	Intergenic	1	0.116	6E-6	5.221848749616356	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.11	9	128713304	PKN3	PKN3			29941			rs72758841-G	rs72758841	0	72758841	missense	0	0.036	6E-6	5.221848749616356	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.23	7	73580146	TBL2	TBL2			26608			rs12666883-A	rs12666883	0	12666883	nearGene-5	0	0.033	6E-6	5.221848749616356	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.31	18	3879739	DLGAP1	DLGAP1;DLGAP1-AS3			9229;201477			rs76205593-C	rs76205593	0	76205593	missense;intron	0	0.07	7E-6	5.154901959985742	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q31.3	4	152975008	FHDC1	FHDC1			85462			rs77708442-A	rs77708442	0	77708442	missense	0	0.032	8E-6	5.096910013008055	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q22.1	16	70471456	FUK	FUK			197258			rs11861805-T	rs11861805	0	11861805	intron	0	0.049	8E-6	5.096910013008055	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.1	15	45642671	SQRDL	SQRDL			58472			rs607541-C	rs607541	0	607541	intron	0	0.464	8E-6	5.096910013008055	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	16	3728336	CREBBP	CREBBP			1387			rs3751845-A	rs3751845	0	3751845	cds-synon	0	0.053	9E-6	5.045757490560675	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	2	11618305	GREB1	GREB1			9687			rs73175262-A	rs73175262	0	73175262	missense	0	0.053	9E-6	5.045757490560675	(IGFBP-3 )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.2	9	133263862	ABO	ABO			28			rs657152-A	rs657152	0	657152	intron	0	0.254	2E-8	7.698970004336018	(IL6 )	    .04	[NR] pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q21.3	14	46985783	MDGA2	MDGA2			161357			rs11627056-A	rs11627056	0	11627056	intron	0	0.281	3E-7	6.522878745280337	(IL6 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	10	25873837	MYO3A	RNA5SP306 - MYO3A	100873580	53904		       59.92	       60.24	rs4749080-G	rs4749080	0	4749080	Intergenic	1	0.268	4E-7	6.397940008672037	(IL6 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q42.2	1	231134890	TRIM67	MIR1182 - TRIM67	100302132	440730		      114.97	       28.04	rs12023396-G	rs12023396	0	12023396	Intergenic	1	0.181	4E-7	6.397940008672037	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p26.1	3	4662253	ITPR1	ITPR1			3708			rs7632000-A	rs7632000	0	7632000	intron	0	0.105	7E-7	6.154901959985743	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	8137767	ICA1	ICA1			3382			rs17143586-A	rs17143586	0	17143586	intron	0	0.022	1E-6	5.999999999999999	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p12.1	3	86919359	VGLL3	PRKRIRP2 - VGLL3	100422711	389136		      904.04	       18.61	rs17023661-A	rs17023661	0	17023661	Intergenic	1	0.221	2E-6	5.698970004336018	(IL6 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p12	17	14986608	RPL23AP76	RPL23AP76 - CDRT7	441781	94150		       38.41	       44.37	rs8066099-A	rs8066099	0	8066099	Intergenic	1	0.017	2E-6	5.698970004336018	(IL6 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.2	18	52666026	DCC	DCC			1630			rs4940203-A	rs4940203	0	4940203	intron	0	0.294	5E-7	6.30102999566398	(RQmax)	    .05	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	12393380	CAMK1D	CAMK1D			57118			rs4750211-A	rs4750211	0	4750211	intron	0	0.3	6E-7	6.221848749616355	(RQmax)	    .05	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	10	28463177	RPSAP10	RPSAP10 - WAC-AS1	401638	220906		       26.03	       56.74	rs2153299-G	rs2153299	0	2153299	Intergenic	1	0.463	3E-6	5.522878745280337	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.33	3	120517482	FSTL1	RPL34P9 - NDUFB4	100271002	4710		        4.29	       78.80	rs9289146-A	rs9289146	0	9289146	Intergenic	1	0.09	7E-6	5.154901959985742	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q42.3	1	235103812	TOMM20	RNY4P16 - TOMM20	100431173	9804		      265.74	        5.53	rs11577354-G	rs11577354	0	11577354	Intergenic	1	0.445	7E-6	5.154901959985742	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q28.1	4	127420965	LOC729424	RBM48P1 - INTU	132817	27152		      856.19	      211.97	rs724950-A	rs724950	0	724950	Intergenic	1	0.365	8E-6	5.096910013008055	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p12.2	7	49594206	Intergenic	CDC14C - VWC2	168448	375567		      666.75	      179.46	rs4492324-G	rs4492324	0	4492324	Intergenic	1	0.235	8E-6	5.096910013008055	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.11	19	17652081	UNC13A	UNC13A			23025			rs10416963-G	rs10416963	0	10416963	intron	0	0.487	8E-6	5.096910013008055	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q25.3	17	81144773	AATK	AATK			9625			rs7220048-G	rs7220048	0	7220048	intron	0	0.496	9E-6	5.045757490560675	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.31	12	9311210	PZP	LOC642846			642846			rs10771515-A	rs10771515	0	10771515	ncRNA	0	0.049	9E-6	5.045757490560675	(RQmax)	    .04	[NR]   increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.2	14	54656200	SAMD4A	SAMD4A			23034			rs17127713-G	rs17127713	0	17127713	intron	0	0.018	3E-6	5.522878745280337	(SBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	15	88705908	ISG20	ISG20 - ACAN	3669	176		       50.26	       97.53	rs8027587-G	rs8027587	0	8027587	Intergenic	1	0.48	5E-6	5.301029995663981	(SBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.2	9	27309661	C9orf11	EQTN - MOB3B	54586	79817		       12.52	       15.55	rs10967875-G	rs10967875	0	10967875	Intergenic	1	0.275	6E-6	5.221848749616356	(SBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	13	91849410	GPC5	GPC5			2262			rs7328464-A	rs7328464	0	7328464	intron	0	0.053	4E-7	6.397940008672037	(Sedentary activity )	    .04	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	4	35981489	CENTD1	SEC63P2 - ARAP2	100420287	116984		      491.77	       84.51	rs6834483-G	rs6834483	0	6834483	Intergenic	1	0.017	6E-7	6.221848749616355	(Sedentary activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	4	35981489	CENTD1	SEC63P2 - ARAP2	100420287	116984		      491.77	       84.51	rs6834483-G	rs6834483	0	6834483	Intergenic	1	0.017	3E-6	5.522878745280337	(Sedentary activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.3	9	112035757	SUSD1	MIR4668 - SUSD1	100616114	64420		      103.59	        5.02	rs10125054-A	rs10125054	0	10125054	Intergenic	1	0.302	4E-6	5.397940008672037	(Sedentary activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.3	4	1045427	FGFRL1	FGFRL1 - RNF212	53834	285498		       18.53	       10.82	rs62296075-G	rs62296075	0	62296075	Intergenic	1	0.023	4E-6	5.397940008672037	(Sedentary activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.3	9	15335916	RPL7P3	TTC39B - RPL7P33	158219	286348		       28.56	       25.46	rs16933006-C	rs16933006	0	16933006	Intergenic	1	0.11	4E-6	5.397940008672037	(Sedentary activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.3	10	77781077	DLG5	IMPDH1P5			340780			rs12261589-A	rs12261589	0	12261589		0	0.012	4E-6	5.397940008672037	(Sedentary activity )	    .04	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.2	10	99732646	COX15, CUTC	COX15;CUTC			1355;51076			rs2281636-A	rs2281636	0	2281636	UTR-5;intron	0	0.336	6E-6	5.221848749616356	(LDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	20	61939168	CDH4	CDH4			1002			rs4925325-A	rs4925325	0	4925325	UTR-3	0	0.381	7E-6	5.154901959985742	(LDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.3	1	98987731	LPPR5	LPPR5			163404			rs10443196-G	rs10443196	0	10443196	intron	0	0.273	9E-6	5.045757490560675	(LDL )	    .04	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p33	1	47559391	FOXD2	ATP6V0E1P4 - TRABD2B	100874504	388630		        8.64	      201.14	rs685001-C	rs685001	0	685001	Intergenic	1	0.362	9E-6	5.045757490560675	(LDL )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	132321978	MOXD1	MOXD1			26002			rs589756-A	rs589756	0	589756	intron	0	0.129	1E-7	7	(Lean body mass )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	3E-7	6.522878745280337	(Lean body mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q11.23	8	52772301	LOC644727	RB1CC1 - NPBWR1	9821	2831		       57.84	      167.61	rs7822058-A	rs7822058	0	7822058	Intergenic	1	0.076	3E-7	6.522878745280337	(Leptin )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.21	20	23117243	LOC200261, CD93	CD93 - LINC00656	22918	200261		       30.90	        7.83	rs1320561-G	rs1320561	0	1320561	Intergenic	1	0.395	1E-6	5.999999999999999	(Leptin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	14	64774231	SPTB	SPTB			6710			rs11158559-A	rs11158559	0	11158559	intron	0	0.148	1E-6	5.999999999999999	(Leptin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.13	12	53160499	CSAD, ITGB7	CSAD			51380			rs2272306-A	rs2272306	0	2272306	intron	0	0.134	2E-6	5.698970004336018	(Leptin )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q23	15	69054606	NOX5	NOX5			79400			rs311904-A	rs311904	0	311904	intron	0	0.164	2E-6	5.698970004336018	(Leptin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.31	18	6668051	ARHGAP28	C18orf64 - ARHGAP28	100130480	79822		       77.40	       61.67	rs11662297-G	rs11662297	0	11662297	Intergenic	1	0.369	4E-6	5.397940008672037	(Leptin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p13.3	5	31927211	PDZD2	PDZD2			23037			rs7719829-A	rs7719829	0	7719829	intron	0	0.395	4E-6	5.397940008672037	(Leptin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	7E-6	5.154901959985742	(Leptin )	    .02	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.3	9	15335916	RPL7P3	TTC39B - RPL7P33	158219	286348		       28.56	       25.46	rs16933006-C	rs16933006	0	16933006	Intergenic	1	0.11	8E-8	7.096910013008055	(Light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.3	1	99058491	PAP2D	LOC100129620			100129620			rs10747502-A	rs10747502	0	10747502	intron	0	0.061	5E-7	6.30102999566398	(Light activity )	    .04	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.2	8	3630816	CSMD1	CSMD1			64478			rs2449215-G	rs2449215	0	2449215	intron	0	0.38	7E-7	6.154901959985743	(Light activity )	    .04	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.3	9	15335916	RPL7P3	TTC39B - RPL7P33	158219	286348		       28.56	       25.46	rs16933006-C	rs16933006	0	16933006	Intergenic	1	0.11	1E-6	5.999999999999999	(Light activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	4	181563616	Intergenic	LINC00290 - MGC45800	728081	90768		      404.47	      575.39	rs1439283-A	rs1439283	0	1439283	Intergenic	1	0.48	1E-6	5.999999999999999	(Light activity )	    .04	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.2	9	17979580	SH3GL2	PABPC1P11 - PUS7P1	100421058	100421790		      388.88	      173.99	rs1755271-A	rs1755271	0	1755271	Intergenic	1	0.298	2E-6	5.698970004336018	(Light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.11	7	78529155	MAGI2	MAGI2			9863			rs12666870-G	rs12666870	0	12666870	intron	0	0.249	3E-6	5.522878745280337	(Light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	6	151759697	ESR1	ESR1			2099			rs60945108-A	rs60945108	0	60945108	intron	0	0.0090	3E-6	5.522878745280337	(Light activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q12	17	38945127	FBXO47	FBXO47			494188			rs9906595-A	rs9906595	0	9906595	missense	0	0.041	4E-6	5.397940008672037	(Light activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	1	69938857	LRRC7	LRRC7			57554			rs1023008-T	rs1023008	0	1023008	intron	0	0.481	6E-6	5.221848749616356	(Light activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p14	4	35981489	CENTD1	SEC63P2 - ARAP2	100420287	116984		      491.77	       84.51	rs6834483-G	rs6834483	0	6834483	Intergenic	1	0.017	6E-6	5.221848749616356	(Light activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	7898965	LOC729852	RPL23AP51 - GLCCI1	100271464	113263		      156.40	       69.78	rs10486201-A	rs10486201	0	10486201	Intergenic	1	0.1	6E-6	5.221848749616356	(Light activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.1	18	49594946	LIPG	LIPG - SMUG1P1	9388	100129143		        2.04	       55.40	rs17798991-A	rs17798991	0	17798991	Intergenic	1	0.387	7E-6	5.154901959985742	(Light activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q35	7	144044487	OR2A5	OR6B1 - OR2A5	135946	393046		       39.56	        5.92	rs11976180-C	rs11976180	0	11976180	Intergenic	1	0.195	7E-6	5.154901959985742	(Light activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q12.1	8	56401347	SDR16C6P	SDR16C6P - PENK	442388	5179		       10.64	       39.61	rs12545109-A	rs12545109	0	12545109	Intergenic	1	0.225	9E-6	5.045757490560675	(Light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.2	1	159205564	DARC, FCER1A, OR10J5, OR10J1	ACKR1			2532			rs12075-A	rs12075	0	12075	missense	0	0.436	1E-21	21	(MCP1 )	    .10	[NR] pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p21.31	3	46240900	CCR3, CCR2	CCR3			1232			rs12636651-G	rs12636651	0	12636651	nearGene-5	0	0.403	7E-9	8.154901959985743	(MCP1 )	    .05	[NR] pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q32	9	114478626	DFNB31	DFNB31			25861			rs79509430-A	rs79509430	0	79509430	missense	0	0.068	2E-8	7.698970004336018	(MCP1 )	    .06	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q11.21	10	43260306	RASGEF1A	RASGEF1A			221002			rs28461806-G	rs28461806	0	28461806	intron	0	0.049	5E-8	7.30102999566398	(MCP1 )	    .05	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	2	11618305	GREB1	GREB1			9687			rs73175262-A	rs73175262	0	73175262	missense	0	0.053	7E-8	7.154901959985742	(MCP1 )	    .05	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q21.31	17	44253361	SLC4A1	SLC4A1			6521			rs5023-G	rs5023	0	5023	missense	0	0.046	1E-6	5.999999999999999	(MCP1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.2	18	36791898	FHOD3, TPGS2	TPGS2			25941			rs7226408-A	rs7226408	0	7226408	intron	0	0.181	5E-6	5.301029995663981	(Adiponectin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.2	2	188854236	DIRC1	DIRC1 - COL3A1	116093	1281		       64.13	      120.14	rs2675399-G	rs2675399	0	2675399	Intergenic	1	0.196	6E-6	5.221848749616356	(Adiponectin )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	18	25813140	SS18	ZNF521 - SS18	25925	6760		      460.89	      203.11	rs7231041-G	rs7231041	0	7231041	Intergenic	1	0.174	2E-6	5.698970004336018	(Moderate activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	6	150804115	PLEKHG1	PLEKHG1			57480			rs10046456-A	rs10046456	0	10046456	intron	0	0.04	3E-6	5.522878745280337	(Moderate activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	12	118725274	KIAA1853	SUDS3 - RPL17P37	64426	100271411		      307.24	       12.65	rs11069062-A	rs11069062	0	11069062	Intergenic	1	0.124	3E-6	5.522878745280337	(Moderate activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	18	25813140	SS18	ZNF521 - SS18	25925	6760		      460.89	      203.11	rs7231041-G	rs7231041	0	7231041	Intergenic	1	0.174	5E-6	5.301029995663981	(Moderate activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q15	5	93151837	POLD2P1	CCT7P2 - POLD2P1	100288772	391811		      260.92	      115.50	rs13173682-A	rs13173682	0	13173682	Intergenic	1	0.231	6E-6	5.221848749616356	(Moderate activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	11	83165228	PCF11	PCF11			51585			rs1943345-C	rs1943345	0	1943345	intron	0	0.239	7E-6	5.154901959985742	(Moderate activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	19	55986594	NLRP8	NLRP8			126205			rs16986856-A	rs16986856	0	16986856	intron	0	0.454	8E-6	5.096910013008055	(Moderate activity )	    .03	[NR]  %awake time increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q25.1	6	150804115	PLEKHG1	PLEKHG1			57480			rs10046456-A	rs10046456	0	10046456	intron	0	0.04	3E-6	5.522878745280337	(Moderate&vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	18	25813140	SS18	ZNF521 - SS18	25925	6760		      460.89	      203.11	rs7231041-G	rs7231041	0	7231041	Intergenic	1	0.174	3E-6	5.522878745280337	(Moderate&vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q22.1	11	98852486	CNTN5	RNA5SP347 - CNTN5	100873609	53942		     1194.90	      168.49	rs11217223-G	rs11217223	0	11217223	Intergenic	1	0.09	6E-6	5.221848749616356	(Moderate&vigorous activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q15	5	93151837	POLD2P1	CCT7P2 - POLD2P1	100288772	391811		      260.92	      115.50	rs13173682-A	rs13173682	0	13173682	Intergenic	1	0.231	9E-6	5.045757490560675	(Moderate&vigorous activity )	    .02	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q24	3	146170670	PLOD2	PLOD2 - PLSCR4	5352	57088		        9.18	       21.67	rs1913185-C	rs1913185	0	1913185	Intergenic	1	0.249	2E-7	6.698970004336019	(NEFA )	    .04	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q24.1	16	86288853	Intergenic	LOC146513			146513			rs987052-G	rs987052	0	987052	intron	0	0.438	7E-7	6.154901959985743	(NEFA )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.1	6	42527540	UBR2	TRNAI25			100189401			rs16895812-G	rs16895812	0	16895812		0	0.181	3E-6	5.522878745280337	(NEFA )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.3	1	152515441	CRCT1	CRCT1			54544			rs73004856-A	rs73004856	0	73004856	missense	0	0.024	3E-6	5.522878745280337	(NEFA )	    .02	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p23	6	14199916	CD83	CD83 - LINC01108	9308	102216342		       63.00	       80.21	rs7758616-A	rs7758616	0	7758616	Intergenic	1	0.018	4E-6	5.397940008672037	(NEFA )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q16.3	6	102523371	GRIK2	GRIK2 - R3HDM2P2	2898	100129694		      453.29	     1494.26	rs17430337-A	rs17430337	0	17430337	Intergenic	1	0.015	5E-6	5.301029995663981	(NEFA )	    .02	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.2	5	153560845	GRIA1	GRIA1			2890			rs10065813-A	rs10065813	0	10065813	intron	0	0.078	8E-6	5.096910013008055	(NEFA )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	4	21569464	KCNIP4	KCNIP4			80333			rs1604805-G	rs1604805	0	1604805	intron	0	0.058	9E-6	5.045757490560675	(NEFA )	    .02	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	16	11281009	PRM1	PRM1			5619			rs737008-A	rs737008	0	737008	cds-synon	0	0.352	8E-7	6.096910013008056	(Protein )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	11	5242623	HBBP1	HBBP1			3044			rs16912210-G	rs16912210	0	16912210	intron	0	0.08	1E-6	5.999999999999999	(Protein )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	21	20448096	Intergenic	RPS3AP1 - LINC00320	101241875	387486		       17.33	      294.49	rs1735884-G	rs1735884	0	1735884	Intergenic	1	0.214	4E-6	5.397940008672037	(Protein )	    .04	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.3	13	37789313	TRPC4	TRPC4			7223			rs9548050-G	rs9548050	0	9548050	intron	0	0.24	9E-6	5.045757490560675	(Protein )	    .03	[NR]  kg/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	16	11281009	PRM1	PRM1			5619			rs737008-A	rs737008	0	737008	cds-synon	0	0.352	8E-7	6.096910013008056	(Protein deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	11	5242623	HBBP1	HBBP1			3044			rs16912210-G	rs16912210	0	16912210	intron	0	0.08	1E-6	5.999999999999999	(Protein deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	21	20448096	Intergenic	RPS3AP1 - LINC00320	101241875	387486		       17.33	      294.49	rs1735884-G	rs1735884	0	1735884	Intergenic	1	0.214	4E-6	5.397940008672037	(Protein deposition )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.3	13	37789313	TRPC4	TRPC4			7223			rs9548050-G	rs9548050	0	9548050	intron	0	0.24	9E-6	5.045757490560675	(Protein deposition )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.3	1	109896858	CSF1	EPS8L3 - CSF1	79574	1435		      132.84	       13.75	rs333960-G	rs333960	0	333960	Intergenic	1	0.144	2E-7	6.698970004336019	(QUICKl)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p12	17	11439291	SHISA6	SHISA6			388336			rs1877644-A	rs1877644	0	1877644	intron	0	0.269	2E-6	5.698970004336018	(QUICKl)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.11	21	33408744	IFNGR2	IFNGR2			3460			rs2268241-A	rs2268241	0	2268241	intron	0	0.201	5E-6	5.301029995663981	(QUICKl)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	18	75795614	Intergenic	SMIM21 - ZNF516	284274	9658		      367.98	      562.07	rs12326088-C	rs12326088	0	12326088	Intergenic	1	0.467	6E-6	5.221848749616356	(QUICKl)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.13	9	73542784	LOC138972	ANXA1 - RORB	301	6096		      372.39	      954.55	rs12555078-A	rs12555078	0	12555078	Intergenic	1	0.098	2E-6	5.698970004336018	(RANTES )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.23	8	138065485	FLJ45872	FLJ45872			401478			rs984440-A	rs984440	0	984440	intron	0	0.127	3E-6	5.522878745280337	(RANTES )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.1	7	37717954	GPR141	GPR141			353345			rs6951258-G	rs6951258	0	6951258	intron	0	0.015	4E-6	5.397940008672037	(RANTES )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	4	14142584	LOC152742	LINC01085 - MTND2P31	152742	100873235		        2.53	      363.28	rs6844339-G	rs6844339	0	6844339	Intergenic	1	0.328	6E-6	5.221848749616356	(RANTES )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.1	13	97401538	MBNL2	RNA5SP37 - RAP2A	100873369	5911		       38.44	       32.68	rs4771996-G	rs4771996	0	4771996	Intergenic	1	0.232	6E-6	5.221848749616356	(Arm span )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	12	118086621	VSIG10	VSIG10			54621			rs7957470-G	rs7957470	0	7957470	intron	0	0.259	8E-6	5.096910013008055	(Arm span )	    .02	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.1	10	58225910	IPMK	IPMK			253430			rs2790232-A	rs2790232	0	2790232	intron	0	0.029	8E-6	5.096910013008055	(Arm span )	    .01	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q16.1	6	98580990	POU3F2	EIF4EBP2P3 - POU3F2	100190924	5454		      401.15	      253.71	rs1383808-G	rs1383808	0	1383808	Intergenic	1	0.0080	9E-6	5.045757490560675	(Arm span )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q13.2	8	68651460	C8orf34	C8orf34			116328			rs7825271-C	rs7825271	0	7825271	intron	0	0.251	3E-7	6.522878745280337	(AST )	    .04	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q21.3	2	134842306	ACMSD	ACMSD			130013			rs10198552-G	rs10198552	0	10198552	intron	0	0.025	7E-7	6.154901959985743	(AST )	    .04	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	4	181783398	Intergenic	LINC00290 - MGC45800	728081	90768		      624.25	      355.61	rs6855088-G	rs6855088	0	6855088	Intergenic	1	0.221	9E-7	6.045757490560675	(AST )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.1	9	117077049	ASTN2	ASTN2			23245			rs16934284-G	rs16934284	0	16934284	intron	0	0.085	2E-6	5.698970004336018	(AST )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	12	120125170	GCN1L1	RAB35 - GCN1L1	11021	10985		        8.33	        2.04	rs11065028-G	rs11065028	0	11065028	Intergenic	1	0.31	4E-6	5.397940008672037	(AST )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q32	5	147845951	SPINK1	SPINK1 - SCGB3A2	6690	117156		        6.72	       32.76	rs891992-G	rs891992	0	891992	Intergenic	1	0.234	6E-6	5.221848749616356	(AST )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.2	9	122144444	NDUFA8	NDUFA8			4702			rs3818638-A	rs3818638	0	3818638	intron	0	0.326	6E-6	5.221848749616356	(AST )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.12	1	21328242	ECE1	ECE1			1889			rs213032-G	rs213032	0	213032	intron	0	0.281	6E-6	5.221848749616356	(Sleep duration )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p13.2	17	4998687	INCA1	KIF1C;INCA1			10749;388324			rs11658587-A	rs11658587	0	11658587	intron;nearGene-5	0	0.024	6E-6	5.221848749616356	(Sleep duration )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	1	83767065	TTLL7	LOC101927587			101927587			rs17129289-G	rs17129289	0	17129289	intron	0	0.011	7E-6	5.154901959985742	(Sleep duration )	    .02	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q13.1	8	65551243	ARMC1	LOC286186			286186			rs6981992-A	rs6981992	0	6981992	intron	0	0.489	8E-6	5.096910013008055	(Sleep duration )	    .02	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q22.1	5	111623085	NREP	STARD4-AS1			100505678			rs11241130-G	rs11241130	0	11241130	intron	0	0.129	8E-6	5.096910013008055	(Sleep duration )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	132321978	MOXD1	MOXD1			26002			rs589756-A	rs589756	0	589756	intron	0	0.129	2E-6	5.698970004336018	(Sleep energy expenditure )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	16	82293200	MPHOSPH6	MPHOSPH6 - CDH13	10200	1012		      122.98	      333.59	rs11863065-A	rs11863065	0	11863065	Intergenic	1	0.03	5E-6	5.301029995663981	(Sleep energy expenditure )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	18	8966146	RPS4XP19	MTCL1 - RPS4XP19	23255	645573		      133.37	       53.85	rs10502386-A	rs10502386	0	10502386	Intergenic	1	0.373	5E-6	5.301029995663981	(Sleep energy expenditure )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	7E-6	5.154901959985742	(Sleep energy expenditure )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q25.1	15	78618839	CHRNA3	CHRNA3			1136			rs8040868-G	rs8040868	0	8040868	cds-synon	0	0.239	6E-8	7.221848749616355	(Sleep energy expenditure adj weight )	    .05	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	21	16110813	C21orf34	LINC00478			388815			rs2823615-A	rs2823615	0	2823615	intron	0	0.178	5E-8	7.30102999566398	(Sleep RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.3	7	29922908	SCRN1	SCRN1			9805			rs17158483-A	rs17158483	0	17158483	UTR-3	0	0.159	9E-6	5.045757490560675	(Sleep RQ)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q28.3	4	137661557	PCDH18	LOC101927414			101927414			rs17049741-A	rs17049741	0	17049741	intron	0	0.15	8E-7	6.096910013008056	(Snack intake )	    .05	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	4	26135397	LOC645481	SMIM20 - RBPJ	389203	3516		      205.52	       28.10	rs907499-G	rs907499	0	907499	Intergenic	1	0.016	4E-6	5.397940008672037	(Snack intake )	    .05	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.2	18	39585341	RPL7AP66	LINC00669			647946			rs7226835-A	rs7226835	0	7226835	intron	0	0.041	8E-6	5.096910013008055	(Snack intake )	    .04	[NR]  kcal increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.1	2	158813937	DAPL1, PKP4	DAPL1			92196			rs16843372-G	rs16843372	0	16843372	intron	0	0.359	1E-6	5.999999999999999	(TBF-b1 )	    .04	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	8	13318898	DLC1	DLC1			10395			rs1671400-A	rs1671400	0	1671400	intron	0	0.153	4E-6	5.397940008672037	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p21.3	8	22120859	HR	HR			55806			rs76547188-A	rs76547188	0	76547188	missense	0	0.0050	5E-6	5.301029995663981	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p12.1	12	21843111	ABCC9	ABCC9			10060			rs11046207-G	rs11046207	0	11046207	intron	0	0.023	5E-6	5.301029995663981	(Sedentary activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	13	91849410	GPC5	GPC5			2262			rs7328464-A	rs7328464	0	7328464	intron	0	0.053	5E-6	5.301029995663981	(Sedentary activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q23.2	5	125513213	LOC644659	LOC101927460			101927460			rs17468244-G	rs17468244	0	17468244	intron	0	0.114	8E-6	5.096910013008055	(Sedentary activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p15.1	10	4674350	LOC338588	LINC00704			100216001			rs2165953-G	rs2165953	0	2165953	intron	0	0.153	9E-6	5.045757490560675	(Sedentary activity )	    .02	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.31	20	57495449	CTCFL, HMG1L1	HMGB1P1 - CTCFL	10357	140690		        6.32	         .52	rs6025590-A	rs6025590	0	6025590	Intergenic	1	0.308	4E-8	7.397940008672037	(Sedentary&light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q24.1	16	86334920	LOC732275, LOC401864	LINC00917			732275			rs4083242-A	rs4083242	0	4083242	intron	0	0.336	1E-7	7	(Sedentary&light activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p12.3	12	19626859	AEBP2	LOC101928387			101928387			rs10841287-G	rs10841287	0	10841287	intron	0	0.165	2E-6	5.698970004336018	(Sedentary&light activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	2	69955673	SASP	MXD1 - ASPRV1	4084	151516		       12.73	        4.42	rs7583236-G	rs7583236	0	7583236	Intergenic	1	0.247	4E-6	5.397940008672037	(Sedentary&light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q11.23	20	36277318	C20orf4	AAR2 - DLGAP4	25980	22839		       20.38	       89.72	rs8115222-G	rs8115222	0	8115222	Intergenic	1	0.015	4E-6	5.397940008672037	(Sedentary&light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.2	13	98443780	FARP1	FARP1			10160			rs9517302-A	rs9517302	0	9517302	intron	0	0.342	5E-6	5.301029995663981	(Sedentary&light activity )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.2	19	39359149	SAMD4B	SAMD4B			55095			rs562638-G	rs562638	0	562638	intron	0	0.117	6E-6	5.221848749616356	(Sedentary&light activity )	    .02	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	11	20356578	HTATIP2	DBX1 - HTATIP2	120237	10553		      196.25	        7.11	rs11025523-A	rs11025523	0	11025523	Intergenic	1	0.091	7E-6	5.154901959985742	(Sedentary&light activity )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.2	6	3294590	SLC22A23	SLC22A23			63027			rs9378357-A	rs9378357	0	9378357	intron	0	0.185	1E-6	5.999999999999999	(sICAM-1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.3	18	43900562	KRT8P5	SYT4 - IBTKP1	6860	100127883		      622.91	      138.90	rs1380836-G	rs1380836	0	1380836	Intergenic	1	0.292	2E-6	5.698970004336018	(sICAM-1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	8	14692647	SGCZ	SGCZ			137868			rs11989868-C	rs11989868	0	11989868	intron	0	0.386	2E-6	5.698970004336018	(sICAM-1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p22.2	1	88875725	GTF2B	GTF2B			2959			rs17130643-A	rs17130643	0	17130643	intron	0	0.0060	4E-6	5.397940008672037	(sICAM-1 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	10	124605598	LHPP	LHPP			64077			rs3740540-A	rs3740540	0	3740540	intron	0	0.287	5E-6	5.301029995663981	(Sitting height )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.1	10	51482943	PRKG1	PRKG1			5592			rs293314-G	rs293314	0	293314	intron	0	0.056	7E-6	5.154901959985742	(Sitting height )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	18	77240802	GALR1	MBP - GALR1	4155	2587		      107.09	        9.25	rs8084125-G	rs8084125	0	8084125	Intergenic	1	0.133	7E-6	5.154901959985742	(Sitting height )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	18	8966146	RPS4XP19	MTCL1 - RPS4XP19	23255	645573		      133.37	       53.85	rs10502386-A	rs10502386	0	10502386	Intergenic	1	0.373	7E-6	5.154901959985742	(Sitting height )	    .01	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.21	1	12681229	AADACL4	AADACL4 - AADACL3	343066	126767		       14.14	       34.89	rs2489260-A	rs2489260	0	2489260	Intergenic	1	0.145	8E-6	5.096910013008055	(Sitting height )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.2	11	124085759	LOH11CR2A	OR10D5P - OR10D4P	79488	390266		       30.03	        7.68	rs1893767-G	rs1893767	0	1893767	Intergenic	1	0.126	9E-6	5.045757490560675	(Sitting height )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q13.3	15	32635275	ARHGAP11A, SCG5	ARHGAP11A			9824			rs8037818-G	rs8037818	0	8037818	intron	0	0.181	5E-8	7.30102999566398	(Sleep duration )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	5	175751872	CPLX2	HRH2 - CPLX2	3274	10814		       42.64	       44.67	rs10039217-G	rs10039217	0	10039217	Intergenic	1	0.013	3E-7	6.522878745280337	(Sleep duration )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	4	12497263	HSP90AB2P	RNA5SP156 - HSP90AB2P	100873422	391634		     1083.10	      839.12	rs7665957-A	rs7665957	0	7665957	Intergenic	1	0.0060	5E-7	6.30102999566398	(Sleep duration )	    .01	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p13	20	187379	DEFB128	DEFB127 - DEFB128	140850	245939		       28.22	         .51	rs13036722-G	rs13036722	0	13036722	Intergenic	1	0.067	7E-7	6.154901959985743	(Sleep duration )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.31	18	5762619	LOC645355	LOC645355			645355			rs11662748-A	rs11662748	0	11662748	intron	0	0.114	1E-6	5.999999999999999	(Sleep duration )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q32.2	7	129716366	NRF1	NRF1			4899			rs9641855-G	rs9641855	0	9641855	intron	0	0.335	2E-6	5.698970004336018	(Sleep duration )	    .02	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.2	20	12101994	BTBD3	BTBD3 - PA2G4P2	22903	170533		      175.40	      278.02	rs11907106-A	rs11907106	0	11907106	Intergenic	1	0.0030	4E-6	5.397940008672037	(Sleep duration )	    .01	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.33	9	84329510	SLC28A3	SLC28A3			64078			rs12000457-A	rs12000457	0	12000457	intron	0	0.04	4E-6	5.397940008672037	(Sleep duration )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	11	21655796	NELL1	RNA5SP337 - ANO5	100873600	203859		      271.89	      536.87	rs2051457-A	rs2051457	0	2051457	Intergenic	1	0.096	5E-6	5.301029995663981	(Sleep duration )	    .03	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	7	19208655	FERD3L	FERD3L - TWISTNB	222894	221830		       63.23	      486.81	rs17140875-A	rs17140875	0	17140875	Intergenic	1	0.051	5E-6	5.301029995663981	(Sleep duration )	    .02	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	1	80012195	HMGB1P18	ADH5P2 - HMGB1P18	343296	646526		      489.73	      271.16	rs10493631-G	rs10493631	0	10493631	Intergenic	1	0.306	5E-6	5.301029995663981	(Sleep duration )	    .04	[NR]  min/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	11	115431152	CADM1	CADM1			23705			rs220836-G	rs220836	0	220836	intron	0	0.16	6E-6	5.221848749616356	(AST )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	1	83921949	TTLL7	TTLL7			79739			rs10465746-A	rs10465746	0	10465746	intron	0	0.447	8E-6	5.096910013008055	(AST )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.33	3	120706484	RABL3, GTF2E1	RABL3			285282			rs13077101-G	rs13077101	0	13077101	intron	0	0.177	2E-7	6.698970004336019	(AST/ALT)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	1	183389270	NMNAT2	NMNAT2			23057			rs2078087-A	rs2078087	0	2078087	intron	0	0.139	1E-6	5.999999999999999	(AST/ALT)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.3	2	204118831	ICOS	ICOS - DSTNP5	29851	100132132		      157.25	      188.01	rs16840760-G	rs16840760	0	16840760	Intergenic	1	0.0060	1E-6	5.999999999999999	(AST/ALT)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	4	179783765	Intergenic	RNA5SP173 - LINC00290	100873437	728081		     1376.94	     1280.32	rs11495908-G	rs11495908	0	11495908	Intergenic	1	0.086	2E-6	5.698970004336018	(AST/ALT)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	2	68423865	LOC391383	PLEK - FBXO48	5341	554251		       26.41	       38.50	rs6759808-G	rs6759808	0	6759808	Intergenic	1	0.194	4E-6	5.397940008672037	(AST/ALT)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.3	1	154781718	KCNN3	KCNN3			3782			rs6691316-G	rs6691316	0	6691316	intron	0	0.318	7E-6	5.154901959985742	(AST/ALT)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	10	11677011	USP6NL	USP6NL-IT1 - ECHDC3	100507213	79746		      103.52	       65.35	rs12265836-C	rs12265836	0	12265836	Intergenic	1	0.106	8E-6	5.096910013008055	(AST/ALT)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.32	18	355944	COLEC12	COLEC12			81035			rs644435-G	rs644435	0	644435	intron	0	0.326	4E-6	5.397940008672037	(Bike energy expenditure )	    .03	[NR]  kcal/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p22.3	7	2542818	BRAT1	BRAT1			221927			rs6972204-G	rs6972204	0	6972204	intron	0	0.171	5E-6	5.301029995663981	(Bike energy expenditure )	    .03	[NR]  kcal/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q21.32	9	82994866	RASEF	RASEF			158158			rs10867921-A	rs10867921	0	10867921	intron	0	0.03	8E-6	5.096910013008055	(Bike energy expenditure )	    .03	[NR]  kcal/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.2	11	13069395	RASSF10	RASSF10 - ARNTL	644943	406		       57.29	      208.34	rs2727405-A	rs2727405	0	2727405	Intergenic	1	0.323	8E-6	5.096910013008055	(Bike energy expenditure )	    .03	[NR]  kcal/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.2	2	5297410	SOX11	LINC01249 - LINC01248	727982	102723818		      641.19	      336.73	rs13004938-G	rs13004938	0	13004938	Intergenic	1	0.094	9E-6	5.045757490560675	(Bike energy expenditure )	    .04	[NR]  kcal/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q34	7	139858148	TBXAS1	TBXAS1			6916			rs194151-A	rs194151	0	194151	intron	0	0.42	9E-6	5.045757490560675	(Bike energy expenditure )	    .03	[NR]  kcal/min increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	11	79281641	ODZ4	TENM4			26011			rs1151200-G	rs1151200	0	1151200	intron	0	0.419	4E-7	6.397940008672037	(Birth weight )	    .06	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.11	13	42996665	EPSTI1	ZDHHC4P1 - DNAJC15	100420920	29103		       61.73	       26.56	rs17064002-A	rs17064002	0	17064002	Intergenic	1	0.0070	7E-7	6.154901959985743	(Birth weight )	    .06	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.2	9	2696555	KCNV2, KIAA0020	VLDLR - KCNV2	7436	169522		       42.07	       20.97	rs930811-G	rs930811	0	930811	Intergenic	1	0.406	1E-6	5.999999999999999	(Birth weight )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.1	6	4379277	KU-MEL-3, PECI, ECI2	ECI2 - PSMC1P11	10455	442153		      243.68	      323.17	rs17138114-G	rs17138114	0	17138114	Intergenic	1	0.222	1E-6	5.999999999999999	(Birth weight )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q14.1	2	114829362	DPP10	DPP10;DPP10-AS3			57628;101927591			rs6732028-G	rs6732028	0	6732028	intron;intron	0	0.247	3E-6	5.522878745280337	(Birth weight )	    .06	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.2	18	51878594	LOC100287225	RPS8P3 - DCC	100132995	1630		       32.96	      461.58	rs1351435-A	rs1351435	0	1351435	Intergenic	1	0.0050	5E-6	5.301029995663981	(Birth weight )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.11	16	16636871	LOC441750	NPIPA7 - XYLT1	101059938	64131		      242.90	      465.45	rs9937036-C	rs9937036	0	9937036	Intergenic	1	0.015	8E-7	6.096910013008056	(ALT )	    .04	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	5	85922051	NBPF22P	RPS2P25 - PTP4A1P4	100270913	100129564		      158.79	      164.89	rs1583686-A	rs1583686	0	1583686	Intergenic	1	0.124	1E-6	5.999999999999999	(ALT )	    .04	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p26.3	3	355870	CHL1	CHL1			10752			rs892295-A	rs892295	0	892295	intron	0	0.033	4E-6	5.397940008672037	(ALT )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q21	6	108532290	LACE1	RPL36AP24 - FOXO3	100271508	2309		      213.84	       27.53	rs17041-A	rs17041	0	17041	Intergenic	1	0.473	6E-6	5.221848749616356	(ALT )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q36.3	7	155976055	tcag7.1213	SHH - LINC01006	6469	100506380		      163.78	      496.04	rs10267337-A	rs10267337	0	10267337	Intergenic	1	0.04	8E-6	5.096910013008055	(ALT )	    .03	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.3	16	17930993	Intergenic	XYLT1 - RPL7P47	64131	146110		      460.11	        1.72	rs9922516-G	rs9922516	0	9922516	Intergenic	1	0.0060	9E-6	5.045757490560675	(ALT )	    .02	[NR]  U/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p26.3	3	355870	CHL1	CHL1			10752			rs892295-A	rs892295	0	892295	intron	0	0.033	1E-6	5.999999999999999	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	7	94084209	BET1	BET1 - COL1A2	10282	1278		       79.83	      310.35	rs10487245-A	rs10487245	0	10487245	Intergenic	1	0.148	2E-6	5.698970004336018	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	1	79534963	ADH5P2	ADH5P2 - HMGB1P18	343296	646526		       12.50	      748.39	rs3000140-A	rs3000140	0	3000140	Intergenic	1	0.027	2E-6	5.698970004336018	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.2	7	36172140	EEPD1	EEPD1			80820			rs9648428-A	rs9648428	0	9648428	intron	0	0.092	3E-6	5.522878745280337	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.2	1	149942458	OTUD7B	OTUD7B			56957			rs1061955-A	rs1061955	0	1061955	UTR-3	0	0.014	4E-6	5.397940008672037	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.3	4	179783765	Intergenic	RNA5SP173 - LINC00290	100873437	728081		     1376.94	     1280.32	rs11495908-G	rs11495908	0	11495908	Intergenic	1	0.086	4E-6	5.397940008672037	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.33	3	120706484	GTF2E1, RABL3	RABL3			285282			rs13077101-G	rs13077101	0	13077101	intron	0	0.177	1E-6	5.999999999999999	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	2	68425448	LOC391383	PLEK - FBXO48	5341	554251		       28.00	       36.92	rs11126185-G	rs11126185	0	11126185	Intergenic	1	0.188	5E-6	5.301029995663981	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.1	2	154146334	GALNT13	GALNT13			114805			rs16836124-G	rs16836124	0	16836124	intron	0	0.054	6E-6	5.221848749616356	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.3	10	66614326	CTNNA3	CTNNA3			29119			rs7909235-A	rs7909235	0	7909235	intron	0	0.193	8E-6	5.096910013008055	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	5	8983609	SEMA5A	MIR4458 - SEMA5A	100616142	9037		      522.61	       51.42	rs11134338-A	rs11134338	0	11134338	Intergenic	1	0.131	8E-6	5.096910013008055	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.11	8	117138754	SLC30A8	SLC30A8			169026			rs11989843-G	rs11989843	0	11989843	intron	0	0.167	8E-6	5.096910013008055	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.3	1	154781718	KCNN3	KCNN3			3782			rs6691316-G	rs6691316	0	6691316	intron	0	0.318	9E-6	5.045757490560675	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.12	1	22173037	WNT4	WNT4 - MIR4418	54361	100616433		       30.01	       93.20	rs17360053-G	rs17360053	0	17360053	Intergenic	1	0.19	9E-6	5.045757490560675	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q13	6	70950408	B3GAT2	B3GAT2			135152			rs6922893-A	rs6922893	0	6922893	intron	0	0.219	7E-6	5.154901959985742	(ALT/AST)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.21	12	114276461	TBX5	GLULP5 - TBX5	100421694	6910		      170.54	       77.47	rs10744816-G	rs10744816	0	10744816	Intergenic	1	0.234	6E-7	6.221848749616355	(Amylin )	    .04	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.3	2	167785460	B3GALT1	B3GALT1			8708			rs1004368-G	rs1004368	0	1004368	intron	0	0.103	2E-6	5.698970004336018	(Amylin )	    .03	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q11.2	15	24888839	SNRPN	SNRPN			6638			rs2030062-G	rs2030062	0	2030062	intron	0	0.105	2E-6	5.698970004336018	(Amylin )	    .03	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	2	170400087	MYO3B	MYO3B			140469			rs7561268-C	rs7561268	0	7561268	intron	0	0.297	2E-6	5.698970004336018	(Amylin )	    .03	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.12	14	92236252	CPSF2	CPSF2 - SLC24A4	53981	123041		       72.05	       86.33	rs1741439-A	rs1741439	0	1741439	Intergenic	1	0.0050	3E-6	5.522878745280337	(Amylin )	    .04	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q21.23	4	85794159	ARHGAP24	ARHGAP24			83478			rs7687906-C	rs7687906	0	7687906	intron	0	0.217	5E-6	5.301029995663981	(Amylin )	    .03	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.13	13	24959693	TPTE2P1	TPTE2P1			646405			rs2483374-C	rs2483374	0	2483374	intron	0	0.386	5E-6	5.301029995663981	(Amylin )	    .03	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	2	169767711	KLHL23	PTCHD3P2			100533664			rs2114646-G	rs2114646	0	2114646		0	0.494	6E-6	5.221848749616356	(Amylin )	    .03	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q33.2	5	155875572	SGCD	PPIGP1 - SGCD	100131033	6444		      381.76	      159.57	rs1432723-G	rs1432723	0	1432723	Intergenic	1	0.447	9E-6	5.045757490560675	(Amylin )	    .03	[NR]  pM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.22	7	70422099	AUTS2	AUTS2			26053			rs11766624-G	rs11766624	0	11766624	intron	0	0.153	4E-7	6.397940008672037	(Arm span )	    .04	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.2	21	40621781	DSCAM	DSCAM;DSCAM-IT1			1826;100874326			rs3804024-G	rs3804024	0	3804024	intron;intron	0	0.035	9E-7	6.045757490560675	(Arm span )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q22.3	7	105902134	ATXN7L1	CDHR3			222256			rs13438712-G	rs13438712	0	13438712	intron	0	0.2	2E-6	5.698970004336018	(Arm span )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.2	13	97551473	LOC121906	PSMA6P4 - RPL7AP61	121906	100271539		       74.85	      350.18	rs349114-A	rs349114	0	349114	Intergenic	1	0.224	3E-6	5.522878745280337	(Arm span )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.1	13	84677577	LOC387939	MTND5P3 - LINC00351	100873210	100874137		      153.67	      686.03	rs9319064-A	rs9319064	0	9319064	Intergenic	1	0.0060	3E-6	5.522878745280337	(Arm span )	    .03	[NR]  cm increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.2	19	10688228	ILF3	ILF3			3609			rs2569507-G	rs2569507	0	2569507	intron	0	0.406	7E-6	5.154901959985742	(TG )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	2	237590801	RAB17	RAB17			64284			rs2292873-A	rs2292873	0	2292873	ncRNA	0	0.061	8E-6	5.096910013008055	(TG )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q35.2	5	176422988	CLTB	CLTB - FAF2	1212	23197		        6.42	       25.37	rs2913737-A	rs2913737	0	2913737	Intergenic	1	0.169	8E-6	5.096910013008055	(TG )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.2	1	207764891	CD46	CD46			4179			rs7545126-A	rs7545126	0	7545126	intron	0	0.065	9E-6	5.045757490560675	(TG )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.2	14	71727684	SIPA1L1	SIPA1L1			26037			rs17100926-A	rs17100926	0	17100926	intron	0	0.049	1E-6	5.999999999999999	(TG/HDLC )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	6	40472761	LRFN2	LRFN2			57497			rs9296335-A	rs9296335	0	9296335	intron	0	0.033	3E-6	5.522878745280337	(TG/HDLC )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.2	6	39394078	KIF6	KIF6			221458			rs9296295-A	rs9296295	0	9296295	intron	0	0.06	6E-6	5.221848749616356	(TG/HDLC )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.31	10	19116602	LOC100652979	MALRD1			340895			rs16918253-A	rs16918253	0	16918253	intron	0	0.036	8E-6	5.096910013008055	(TG/HDLC )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q26.31	3	172758629	ECT2	ECT2			1894			rs7646507-G	rs7646507	0	7646507	intron	0	0.084	8E-6	5.096910013008055	(TG/HDLC )	    .03	[NR]  mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	11	116776891	ZNF259, APOA5	BUD13 - ZPR1	84811	8882		        3.89	        1.67	rs2160669-G	rs2160669	0	2160669	Intergenic	1	0.168	9E-6	5.045757490560675	(TG/HDLC )	    .03	[NR] mmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.1	13	81501457	Intergenic	HIGD1AP2 - PTMAP5	100874450	150928		      228.29	      188.44	rs9545740-A	rs9545740	0	9545740	Intergenic	1	0.408	7E-7	6.154901959985743	(TNF-a )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	11	4541988	OR52M1	OR52M2P - OR52M1	338637	119772		       26.06	        3.20	rs12416860-G	rs12416860	0	12416860	Intergenic	1	0.073	4E-6	5.397940008672037	(TNF-a )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.1	12	73694028	RPL31P48	RPL31P48 - VENTXP3	645654	349814		       44.94	      598.29	rs7964120-A	rs7964120	0	7964120	Intergenic	1	0.317	5E-6	5.301029995663981	(TNF-a )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.3	16	19948998	GPRC5B	GPRC5B - GPR139	51704	124274		       62.95	       82.66	rs4527026-A	rs4527026	0	4527026	Intergenic	1	0.013	5E-6	5.301029995663981	(TNF-a )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.2	15	95829400	LOC644192	LINC00924 - NR2F2-AS1	145820	644192		      321.55	      436.99	rs744738-A	rs744738	0	744738	Intergenic	1	0.144	6E-6	5.221848749616356	(TNF-a )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	1	239480871	LOC100505872	CHRM3			1131			rs13373941-C	rs13373941	0	13373941	intron	0	0.0060	8E-6	5.096910013008055	(TNF-a )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q22	12	94471701	CCDC41	LOC102724960			102724960			rs1520724-G	rs1520724	0	1520724	nearGene-5	0	0.415	9E-6	5.045757490560675	(TNF-a )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.1	20	17455828	PCSK2	PCSK2			5126			rs6044834-C	rs6044834	0	6044834	intron	0	0.069	8E-8	7.096910013008055	(Total antioxidants )	    .04	[NR]  mM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	16	4596877	C16orf96, LOC342346	C16orf96			342346			rs8050907-A	rs8050907	0	8050907	intron	0	0.027	7E-7	6.154901959985743	(Total antioxidants )	    .03	[NR]  mM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.31	10	100306428	PKD2L1	PKD2L1			9033			rs17112901-A	rs17112901	0	17112901	intron	0	0.163	2E-6	5.698970004336018	(Total antioxidants )	    .03	[NR]  mM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	1	185044870	RNF2	RNF2			6045			rs3753573-A	rs3753573	0	3753573	nearGene-5	0	0.0020	2E-6	5.698970004336018	(Total antioxidants )	    .03	[NR]  mM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	2	170604622	MYO3B	MYO3B			140469			rs6749331-G	rs6749331	0	6749331	intron	0	0.121	3E-6	5.522878745280337	(Total antioxidants )	    .03	[NR]  mM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.3	8	141546705	FLJ43860	HNRNPA1P38 - MIR1302-7	100421384	100302147		       86.48	      239.54	rs1566080-A	rs1566080	0	1566080	Intergenic	1	0.22	6E-6	5.221848749616356	(Total antioxidants )	    .03	[NR]  mM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	10	8591898	LOC338591	KRT8P16 - CHCHD3P1	220959	338591		       49.30	       28.04	rs4749791-A	rs4749791	0	4749791	Intergenic	1	0.469	8E-6	5.096910013008055	(Total antioxidants )	    .03	[NR]  mM increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q12	14	25660360	LOC401767	OR7K1P - CYB5AP5	81114	100289051		      301.59	      547.60	rs12586774-A	rs12586774	0	12586774	Intergenic	1	0.094	4E-7	6.397940008672037	(Total cysteine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	5	9474834	SEMA5A	SEMA5A			9037			rs433755-C	rs433755	0	433755	intron	0	0.451	5E-7	6.30102999566398	(Total cysteine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	1	113901972	AP4B1, MAGI3, PHTF1, RSBN1, PTPN22, SYT6, OLFML3	AP4B1			10717			rs12079716-C	rs12079716	0	12079716	intron	0	0.0030	2E-6	5.698970004336018	(Total cysteine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q41	1	220938438	HLX	HLX - C1orf140	3142	400804		       53.38	      391.49	rs7542375-C	rs7542375	0	7542375	Intergenic	1	0.431	2E-6	5.698970004336018	(Total cysteine )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.2	14	96927348	Intergenic	VRK1 - LINC00618	7443	145249		       45.73	       16.23	rs8016620-G	rs8016620	0	8016620	Intergenic	1	0.033	5E-6	5.301029995663981	(Total cysteine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.1	10	97535040	UBTD1	UBTD1			80019			rs12767760-G	rs12767760	0	12767760	intron	0	0.364	7E-6	5.154901959985742	(Total cysteine )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	10	27862006	ARMC4	ARMC4			55130			rs11006747-A	rs11006747	0	11006747	intron	0	0.383	8E-6	5.096910013008055	(Total cysteine )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	16	82293200	MPHOSPH6	MPHOSPH6 - CDH13	10200	1012		      122.98	      333.59	rs11863065-A	rs11863065	0	11863065	Intergenic	1	0.03	9E-7	6.045757490560675	(Total energy expenditure )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	132321978	MOXD1	MOXD1			26002			rs589756-A	rs589756	0	589756	intron	0	0.129	1E-6	5.999999999999999	(Total energy expenditure )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.2	12	62787036	PPM1H	PPM1H			57460			rs549433-G	rs549433	0	549433	intron	0	0.183	4E-6	5.397940008672037	(Total energy expenditure )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	6E-6	5.221848749616356	(Total energy expenditure )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q34.1	4	175349734	LOC391718	ADAM29 - TSEN2P1	11086	391718		      371.55	      144.84	rs2333163-G	rs2333163	0	2333163	Intergenic	1	0.034	5E-6	5.301029995663981	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.11	10	117577235	EMX2	EMX2 - RAB11FIP2	2018	22841		       27.69	      427.68	rs384627-A	rs384627	0	384627	Intergenic	1	0.0060	5E-6	5.301029995663981	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	15	93271900	UNQ9370	UNQ9370 - SEPHS1P2	400454	100420292		       63.86	      158.76	rs17612678-G	rs17612678	0	17612678	Intergenic	1	0.275	5E-6	5.301029995663981	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.2	16	9249490	RPL21P119	RPL21P119 - RNA5SP404	653737	100873656		       92.57	      350.61	rs1397142-A	rs1397142	0	1397142	Intergenic	1	0.359	6E-6	5.221848749616356	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.13	12	51333812	CELA1	CELA1			1990			rs3951439-G	rs3951439	0	3951439	intron	0	0.0060	6E-6	5.221848749616356	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	2	218964484	CDK5R2	CDK5R2 - LINC00608	8941	151300		        2.33	       11.80	rs359980-G	rs359980	0	359980	Intergenic	1	0.054	7E-6	5.154901959985742	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	1	26242051	CEP85/CCDC21	CEP85			64793			rs10902723-G	rs10902723	0	10902723	intron	0	0.411	9E-6	5.045757490560675	(TBF-b1 )	    .01	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p14.2	7	35567623	HERPUD2	TBX20 - HERPUD2	57057	64224		      313.52	       65.04	rs6973609-G	rs6973609	0	6973609	Intergenic	1	0.381	9E-6	5.045757490560675	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q35	7	146438846	CNTNAP2	CNTNAP2			26047			rs1358075-G	rs1358075	0	1358075	intron	0	0.012	9E-6	5.045757490560675	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	1	82299369	LPHN2	ST13P20 - ARF4P5	729828	100316867		      576.31	     1273.35	rs170678-G	rs1770678	0	1770678	Intergenic	1	0.07	7E-6	5.154901959985742	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.3	13	50545001	Intergenic	RPL34P26 - DLEU7	100130718	220107		      183.24	      167.62	rs1239954-A	rs1239954	0	1239954	Intergenic	1	0.0060	9E-6	5.045757490560675	(TBF-b1 )	    .02	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.1	6	43186049	CUL9	CUL9			23113			rs61743561-A	rs61743561	0	61743561	missense	0	0.0050	9E-6	5.045757490560675	(TBF-b1 )	    .03	[NR]  pg/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q32.3	4	167218229	SPOCK3	SPOCK3			50859			rs9312517-G	rs9312517	0	9312517	intron	0	0.228	8E-7	6.096910013008056	(TC )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q23.3	12	108448086	FICD	CMKLR1 - FICD	1240	11153		      108.77	       67.19	rs11113894-A	rs11113894	0	11113894	Intergenic	1	0.397	2E-6	5.698970004336018	(TC )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.31	5	6879865	Intergenic	MIR4278 - RNA5SP176	100422999	100873438		       51.94	      167.36	rs275437-A	rs275437	0	275437	Intergenic	1	0.494	3E-6	5.522878745280337	(TC )	    .04	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	6	17632830	NUP153	NUP153			9972			rs2274136-G	rs2274136	0	2274136	missense	0	0.228	5E-6	5.301029995663981	(TC )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	18	75824756	Intergenic	SMIM21 - ZNF516	284274	9658		      397.12	      532.93	rs9956878-A	rs9956878	0	9956878	Intergenic	1	0.427	8E-6	5.096910013008055	(TC )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q31.3	9	109834631	PALM2AKAP2	PALM2;PALM2-AKAP2			114299;445815			rs2025875-G	rs2025875	0	2025875	intron;intron	0	0.157	8E-6	5.096910013008055	(TC )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.3	1	109499822	CYB561D1	CYB561D1			284613			rs1043274-A	rs1043274	0	1043274	UTR-3	0	0.026	9E-6	5.045757490560675	(TC )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q12.1	11	56252449	OR5T3	OR5T3			390154			rs17150243-C	rs17150243	0	17150243	missense	0	0.158	9E-6	5.045757490560675	(TC )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.12	13	24673148	ATP12A	TPTE2P6 - ATP12A	374491	479		       75.47	        7.26	rs1530530-G	rs1530530	0	1530530	Intergenic	1	0.068	6E-7	6.221848749616355	(Testosterone )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p11.2	17	18161416	MYO15A, ALKBH5	MYO15A			51168			rs8077577-A	rs8077577	0	8077577	cds-synon	0	0.11	4E-6	5.397940008672037	(Testosterone )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.3	2	3388304	TTC15/TRAPPC12	TRAPPC12			51112			rs10865541-A	rs10865541	0	10865541	cds-synon	0	0.488	6E-6	5.221848749616356	(Testosterone )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q12	20	40015916	MAFB	HSPE1P1 - MAFB	140895	9935		       82.68	      669.93	rs8120917-A	rs8120917	0	8120917	Intergenic	1	0.0040	6E-6	5.221848749616356	(Testosterone )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q34.3	9	137194178	TPRN	TPRN			286262			rs28417902-A	rs28417902	0	28417902	intron	0	0.032	7E-6	5.154901959985742	(Testosterone )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	16702524	RSU1	RSU1			6251			rs11254160-A	rs11254160	0	11254160	intron	0	0.138	8E-6	5.096910013008055	(Testosterone )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p25.3	6	1918028	GMDS	GMDS			2762			rs3800131-A	rs3800131	0	3800131	intron	0	0.356	9E-6	5.045757490560675	(Testosterone )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	11	116786845	ZNF259, APOA5	ZPR1			8882			rs3741298-G	rs3741298	0	3741298	intron	0	0.48	3E-8	7.522878745280337	(TG )	    .04	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	1	26324059	AIM1L	AIM1L			55057			rs11247915-A	rs11247915	0	11247915	intron	0	0.233	5E-6	5.301029995663981	(Calorimeter activity )	    .03	[NR]  counts/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.3	2	3701381	ALLC, DCDC2C	ALLC			55821			rs6730148-G	rs6730148	0	6730148	intron	0	0.074	2E-6	5.698970004336018	(Cortisol )	    .02	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.11	8	117897021	EXT1	EXT1			2131			rs7459527-A	rs7459527	0	7459527	intron	0	0.093	2E-6	5.698970004336018	(Cortisol )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	10	26144437	MYO3A	MYO3A			53904			rs2096176-A	rs2096176	0	2096176	intron	0	0.33	5E-6	5.301029995663981	(Cortisol )	    .02	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4q35.2	4	188663199	RPL7AP27	LINC01060 - HSPA8P12	401164	100420038		       61.29	       50.45	rs7686384-A	rs7686384	0	7686384	Intergenic	1	0.129	6E-6	5.221848749616356	(Cortisol )	    .01	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q36.3	2	227720182	SLC19A3	SLC19A3 - RNA5SP121	80704	100873391		        2.08	       42.87	rs11691652-C	rs11691652	0	11691652	Intergenic	1	0.189	8E-6	5.096910013008055	(Cortisol )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	20	62860142	TCFL5	TCFL5			10732			rs17854409-G	rs17854409	0	17854409	missense	0	0.055	9E-6	5.045757490560675	(Cortisol )	    .02	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q23.2	6	131907629	ENPP1	ENPP1 - CTGF	5167	1490		       12.47	       40.55	rs6907728-C	rs6907728	0	6907728	Intergenic	1	0.186	3E-6	5.522878745280337	(CRP )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	20	63786984	ZBTB46	ZBTB46			140685			rs2315656-G	rs2315656	0	2315656	intron	0	0.395	4E-6	5.397940008672037	(CRP )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.32	9	94681756	FBP1, C9orf3	FBP1 - C9orf3	2203	84909		       41.51	       44.85	rs10125337-G	rs10125337	0	10125337	Intergenic	1	0.0040	4E-6	5.397940008672037	(CRP )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q11.21	7	63117392	LOC442318	ZNF90P3 - PHKG1P1	100873799	643941		       29.11	      115.57	rs6956675-A	rs6956675	0	6956675	Intergenic	1	0.135	6E-6	5.221848749616356	(CRP )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q13.2	5	73952687	RGNEF	LOC100289045			100289045			rs283610-G	rs283610	0	283610		0	0.456	7E-6	5.154901959985742	(CRP )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q12	19	29421387	LOC284395	LOC284395			284395			rs892073-A	rs892073	0	892073	intron	0	0.044	8E-6	5.096910013008055	(CRP )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	4	21509760	KCNIP4	KCNIP4			80333			rs16871289-A	rs16871289	0	16871289	intron	0	0.017	9E-6	5.045757490560675	(CRP )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	1	237186438	RYR2	RYR2			6262			rs6683225-G	rs6683225	0	6683225	intron	0	0.433	2E-6	5.698970004336018	(Cystathionine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p23.1	8	10605296	RP1L1	PRSS55 - RP1L1	203074	94137		       51.13	        1.05	rs4841398-G	rs4841398	0	4841398	Intergenic	1	0.16	3E-6	5.522878745280337	(Cystathionine )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.1	10	97040342	SLIT1	SLIT1			6585			rs3824789-A	rs3824789	0	3824789	intron	0	0.248	6E-6	5.221848749616356	(Cystathionine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	11	134269886	ACAD8	GLB1L3			112937			rs478881-A	rs478881	0	478881	missense	0	0.141	7E-6	5.154901959985742	(Cystathionine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.3	13	29324646	MTUS2	MTUS2			23281			rs61999321-A	rs61999321	0	61999321	missense	0	0.015	8E-6	5.096910013008055	(Cystathionine )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	11	4495346	OR52K1	OR52K1 - OR52M2P	390036	338637		        5.44	       19.60	rs10160399-A	rs10160399	0	10160399	Intergenic	1	0.042	2E-6	5.698970004336018	(DBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q31.1	1	188414185	Intergenic	SLC4A1APP2 - RPS3AP9	100422527	100271129		      705.70	      280.11	rs12142669-A	rs12142669	0	12142669	Intergenic	1	0.104	3E-6	5.522878745280337	(DBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.3	13	99544698	TM9SF2	TM9SF2			9375			rs9513627-G	rs9513627	0	9513627	intron	0	0.057	4E-6	5.397940008672037	(DBP )	    .03	[NR]  mmHg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.1	4	6696039	S100P	S100P			6286			rs3822262-C	rs3822262	0	3822262	intron	0	0.363	3E-6	5.522878745280337	(Total energy expenditure RQ)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q44	1	246497934	SMYD3	SMYD3			64754			rs11800820-A	rs11800820	0	11800820	intron	0	0.164	4E-6	5.397940008672037	(Total energy expenditure RQ)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p13.1	9	38675468	LOC647051	YWHABP1 - VN2R3P	647051	100033392		       31.70	      351.19	rs7039377-A	rs7039377	0	7039377	Intergenic	1	0.496	2E-6	5.698970004336018	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q31.1	5	135236539	H2AFY	C5orf66-AS2;C5orf66			340073;100996485			rs606854-A	rs606854	0	606854	ncRNA;intron	0	0.377	6E-6	5.221848749616356	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q11.2	17	32208837	RHOT1	RHOT1			55288			rs17780304-A	rs17780304	0	17780304	intron	0	0.0060	6E-6	5.221848749616356	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	10	28099221	MPP7	MPP7			143098			rs10763642-A	rs10763642	0	10763642	intron	0	0.426	7E-6	5.154901959985742	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.3	13	107047870	FAM155A	PPIAP24 - FAM155A	122335	728215		      183.44	      120.66	rs9558942-G	rs9558942	0	9558942	Intergenic	1	0.46	7E-6	5.154901959985742	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.2	2	235220307	LOC642692	SH3BP4 - AGAP1	23677	116987		      164.59	      273.78	rs1991705-A	rs1991705	0	1991705	Intergenic	1	0.175	7E-6	5.154901959985742	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q34	2	213973789	SPAG16	SPAG16			79582			rs9789347-A	rs9789347	0	9789347	intron	0	0.326	8E-6	5.096910013008055	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	8	17424902	ADAM24P	MTMR7 - ADAM24P	9108	646479		       11.37	       44.62	rs13271465-A	rs13271465	0	13271465	Intergenic	1	0.244	8E-6	5.096910013008055	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	10	70928614	PCBD1	PCBD1 - UNC5B	5092	219699		       39.83	      283.92	rs1466576-G	rs1466576	0	1466576	Intergenic	1	0.472	8E-6	5.096910013008055	(Total glutathione )	    .03	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	18	75838008	Intergenic	SMIM21 - ZNF516	284274	9658		      410.37	      519.67	rs9959259-A	rs9959259	0	9959259	Intergenic	1	0.207	9E-6	5.045757490560675	(Total glutathione )	    .02	[NR]  µmol/L increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5p15.1	5	15618072	FBXL7	FBXL7			23194			rs12659622-A	rs12659622	0	12659622	intron	0	0.063	9E-7	6.045757490560675	(Total T3 )	    .03	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p21.3	8	22027033	NPM2	NPM2			10361			rs11776272-G	rs11776272	0	11776272	intron	0	0.18	5E-6	5.301029995663981	(Birth weight )	    .05	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q11.21	10	43963266	C10orf136	LINC00841			283033			rs898549-A	rs898549	0	898549	intron	0	0.278	6E-6	5.221848749616356	(Birth weight )	    .06	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	19	56578467	ZNF470	ZNF470			388566			rs34863160-G	rs34863160	0	34863160	missense	0	0.0020	9E-6	5.045757490560675	(Birth weight )	    .02	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	19	57957648	C19orf18	RPL19P19 - C19orf18	646820	147685		        3.85	         .79	rs8106858-A	rs8106858	0	8106858	Intergenic	1	0.0050	9E-6	5.045757490560675	(Birth weight )	    .02	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p22.1	1	92088726	BTBD8	BTBD8			284697			rs34856868-A	rs34856868	0	34856868	missense	0	0.0060	2E-6	5.698970004336018	(BMD )	    .04	[NR]  g/cm2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q11.2	15	25357803	UBE3A	UBE3A			7337			rs8025093-C	rs8025093	0	8025093	intron	0	0.0030	4E-6	5.397940008672037	(BMD )	    .03	[NR]  g/cm2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8p22	8	18850361	PSD3	PSD3			23362			rs7833787-A	rs7833787	0	7833787	intron	0	0.474	5E-6	5.301029995663981	(BMD )	    .04	[NR]  g/cm2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.21	8	126899351	FAM84B	FAM84B - PCAT1	157638	100750225		      340.88	      113.80	rs2220321-A	rs2220321	0	2220321	Intergenic	1	0.385	8E-6	5.096910013008055	(BMD )	    .03	[NR]  g/cm2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.3	1	110921002	CD53	LRIF1			55791			rs12567355-A	rs12567355	0	12567355	intron	0	0.026	9E-6	5.045757490560675	(BMD )	    .04	[NR]  g/cm2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	16	6098029	RBFOX1	RBFOX1			54715			rs4786816-A	rs4786816	0	4786816	intron	0	0.281	2E-6	5.698970004336018	(BMI )	    .03	[NR]  kg/m2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	8E-6	5.096910013008055	(BMI )	    .02	[NR]  kg/m2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	16	82293200	MPHOSPH6	MPHOSPH6 - CDH13	10200	1012		      122.98	      333.59	rs11863065-A	rs11863065	0	11863065	Intergenic	1	0.03	9E-6	5.045757490560675	(BMI )	    .02	[NR]  kg/m2 increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	12	61841052	FAM19A2	FAM19A2			338811			rs2198776-A	rs2198776	0	2198776	intron	0	0.284	5E-7	6.30102999566398	(BMI z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	16	82293200	MPHOSPH6	MPHOSPH6 - CDH13	10200	1012		      122.98	      333.59	rs11863065-A	rs11863065	0	11863065	Intergenic	1	0.03	3E-6	5.522878745280337	(BMI z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	10	89058620	FAS	FAS-AS1 - MIR4679-2	100302740	100616192		       65.65	        4.72	rs7920888-A	rs7920888	0	7920888	Intergenic	1	0.494	5E-6	5.301029995663981	(BMI z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	5q14.3	5	92818872	Intergenic	PCBP2P3 - LDHBP3	100131236	100129283		      974.34	       21.97	rs17668565-G	rs17668565	0	17668565	Intergenic	1	0.403	9E-6	5.045757490560675	(BMI z-score )	    .03	[NR]  SD increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p24.1	6	12509895	RPL15P3	EDN1 - RPL15P3	1906	653232		      212.70	        4.18	rs12198798-G	rs12198798	0	12198798	Intergenic	1	0.114	1E-6	5.999999999999999	(BMI z-score change )	    .04	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.11	13	20519465	CRYL1	CRYL1			51084			rs4770049-G	rs4770049	0	4770049	intron	0	0.061	5E-6	5.301029995663981	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q25.3	10	114439416	ABLIM1	ABLIM1			3983			rs941853-A	rs941853	0	941853	intron	0	0.189	6E-6	5.221848749616356	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.12	1	20128727	PLA2G2D	PLA2G2D - PLA2G2F	26279	64600		        9.16	       10.60	rs12722987-A	rs12722987	0	12722987	Intergenic	1	0.178	7E-6	5.154901959985742	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.1	7	18940644	HDAC9	HDAC9			9734			rs2853552-A	rs2853552	0	2853552	intron	0	0.26	7E-6	5.154901959985742	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p21.1	9	28402045	LINGO2	LINGO2			158038			rs10968562-G	rs10968562	0	10968562	intron	0	0.302	7E-6	5.154901959985742	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.22	12	28591708	CCDC91	RPL29P27 - FAR2	100130792	55711		       26.54	      557.30	rs10843215-G	rs10843215	0	10843215	Intergenic	1	0.309	8E-6	5.096910013008055	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	6	22752818	Intergenic	HDGFL1 - RPL6P18	154150	100131805		      182.30	      349.84	rs7356884-G	rs7356884	0	7356884	Intergenic	1	0.073	8E-6	5.096910013008055	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.1	13	101493209	ITGBL1	ITGBL1			9358			rs1335587-G	rs1335587	0	1335587	intron	0	0.404	9E-6	5.045757490560675	(BMI z-score change )	    .03	[NR]  SD/y increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	9	7195408	JMJD2C	ACTG1P14 - RPL4P5	100418910	158345		      359.83	      281.54	rs2820914-G	rs2820914	0	2820914	Intergenic	1	0.14	2E-6	5.698970004336018	(TG )	    .02	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.13	1	17593322	ARHGEF10L	ARHGEF10L			55160			rs6693036-G	rs6693036	0	6693036	intron	0	0.048	3E-6	5.522878745280337	(TG )	    .04	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	9	5410723	C9orf46	PLGRKT			55848			rs1535454-A	rs1535454	0	1535454	intron	0	0.045	3E-6	5.522878745280337	(TG )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.11	19	19610913	PBX4	PBX4			80714			rs12610185-A	rs12610185	0	12610185	intron	0	0.053	4E-6	5.397940008672037	(TG )	    .03	[NR]  mg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p22.1	2	39712396	TMEM178, LOC728730	TMEM178A			130733			rs17024218-G	rs17024218	0	17024218	intron	0	0.014	2E-6	5.698970004336018	(Total T3 )	    .03	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p12	1	118274106	SPAG17	RNA5SP56 - PSMC1P12	100873294	644094		        9.62	      340.01	rs7527203-A	rs7527203	0	7527203	Intergenic	1	0.013	2E-6	5.698970004336018	(Total T3 )	    .03	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	11	82938726	C11orf82	C11orf82 - RPL7AP54	220042	390228		        4.07	       18.67	rs10792665-C	rs10792665	0	10792665	Intergenic	1	0.443	6E-6	5.221848749616356	(Total T3 )	    .03	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.1	18	28120827	CDH2	CDH2			1000			rs11564386-G	rs11564386	0	11564386	intron	0	0.017	8E-6	5.096910013008055	(Total T3 )	    .03	[NR]  ng/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p24.1	2	23726083	KLHL29	ATAD2B			54454			rs7608623-C	rs7608623	0	7608623	intron	0	0.229	6E-7	6.221848749616355	(Total T4 )	    .03	[NR]  µg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q33.3	9	126432494	FAM125B	MVB12B			89853			rs758970-A	rs758970	0	758970	intron	0	0.309	6E-7	6.221848749616355	(Total T4 )	    .05	[NR]  µg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q26.31	3	174476453	Intergenic	NAALADL2			254827			rs10936797-C	rs10936797	0	10936797	intron	0	0.296	2E-6	5.698970004336018	(Total T4 )	    .03	[NR]  µg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p23.3	2	23931322	ATAD2B, UBXN2A	UBXN2A			165324			rs11674248-A	rs11674248	0	11674248	intron	0	0.254	3E-6	5.522878745280337	(Total T4 )	    .03	[NR]  µg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	12	31997309	C12orf35	LOC102724618			102724618			rs4931594-C	rs4931594	0	4931594	intron	0	0.242	5E-6	5.301029995663981	(Total T4 )	    .03	[NR]  µg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p12.1	6	53650148	KLHL31	KLHL31			401265			rs9474614-G	rs9474614	0	9474614	UTR-3	0	0.224	6E-6	5.221848749616356	(Total T4 )	    .03	[NR]  µg/dL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	2E-7	6.698970004336019	(Trunk fat mass )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	1	203403357	FMOD	FMOD - PRELP	2331	5549		       51.93	       72.40	rs1539143-G	rs1539143	0	1539143	Intergenic	1	0.173	1E-6	5.999999999999999	(Trunk fat mass )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	1	104056319	FTLP17	AMY1C - FTLP17	278	642337		      297.63	       97.21	rs3934285-A	rs3934285	0	3934285	Intergenic	1	0.214	2E-6	5.698970004336018	(Trunk fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	10	24822981	PRTFDC1	COQ10BP1 - PRTFDC1	100421150	56952		      161.99	       25.63	rs11014249-C	rs11014249	0	11014249	Intergenic	1	0.284	3E-6	5.522878745280337	(Trunk fat mass )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	14	94491377	SERPINA12	SERPINA12			145264			rs1998207-A	rs1998207	0	1998207	intron	0	0.22	7E-6	5.154901959985742	(Trunk fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	14	95381957	C14orf139	CLMN - LINC00341	79789	79686		       62.05	       25.31	rs12432260-A	rs12432260	0	12432260	Intergenic	1	0.056	8E-6	5.096910013008055	(Trunk fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p22.2	9	18444140	ADAMTSL1	PUS7P1 - ADAMTSL1	100421790	92949		      289.92	       29.94	rs6475216-A	rs6475216	0	6475216	Intergenic	1	0.484	9E-6	5.045757490560675	(Trunk fat mass )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9q22.33	9	97787746	XPA, FOXE1	KRT18P13 - FOXE1	392371	2304		       86.95	       65.51	rs1443438-A	rs1443438	0	1443438	Intergenic	1	0.253	1E-9	8.999999999999998	(TSH )	    .04	[NR] µIU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	10	10932293	CUGBP2, CELF2	CELF2			10659			rs10905868-G	rs10905868	0	10905868	intron	0	0.151	4E-6	5.397940008672037	(TSH )	    .02	[NR]  µIU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.1	10	84829146	RPS3AP5	RPS3AP5 - GRID1-AS1	439992	100507470		      267.84	      748.59	rs11201253-A	rs11201253	0	11201253	Intergenic	1	0.162	6E-6	5.221848749616356	(TSH )	    .02	[NR]  µIU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	19	1803583	ATP8B3	ATP8B3			148229			rs7253430-A	rs7253430	0	7253430	intron	0	0.132	7E-6	5.154901959985742	(TSH )	    .02	[NR]  µIU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	10	124749450	FAM53B, METTL10	FAM53B-AS1 - METTL10	101927944	399818		       35.81	        9.39	rs10510138-A	rs10510138	0	10510138	Intergenic	1	0.052	8E-6	5.096910013008055	(TSH )	    .02	[NR]  µIU/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p15.3	7	21108059	ASS1P11	RPS26P30 - ASS1P11	100271111	340274		      264.09	      111.92	rs11974269-C	rs11974269	0	11974269	Intergenic	1	0.128	8E-8	7.096910013008055	(Urinary creatinine )	    .05	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.2	10	98410626	PYROXD2, HPS1	PYROXD2			84795			rs6584202-A	rs6584202	0	6584202	intron	0	0.367	4E-7	6.397940008672037	(Urinary creatinine )	    .04	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	1	241592265	KMO	KMO			8564			rs1053221-G	rs1053221	0	1053221	UTR-3	0	0.111	1E-6	5.999999999999999	(Urinary creatinine )	    .04	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p24.3	2	12072319	ST13P1	LOC100506457			100506457			rs16858228-G	rs16858228	0	16858228	intron	0	0.146	1E-6	5.999999999999999	(Urinary creatinine )	    .04	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	10	125447269	Intergenic	MRPS21P6 - RPS27P18	359770	100271380		      280.17	       26.41	rs989507-A	rs989507	0	989507	Intergenic	1	0.188	2E-6	5.698970004336018	(Urinary creatinine )	    .03	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p12	17	11197348	FLJ45455, SHISA6	RPL15P21 - SHISA6	100132722	388336		      335.89	       44.08	rs8076220-G	rs8076220	0	8076220	Intergenic	1	0.074	2E-6	5.698970004336018	(Urinary creatinine )	    .04	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q24.1	15	74256432	CCDC33	CCDC33			80125			rs9783698-A	rs9783698	0	9783698	intron	0	0.15	3E-6	5.522878745280337	(Urinary creatinine )	    .04	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p23.3	2	26860401	DPYSL5	DPYSL5			56896			rs11887277-A	rs11887277	0	11887277	intron	0	0.458	5E-6	5.301029995663981	(Urinary creatinine )	    .04	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.3	2	679179	TMEM18	TMEM18			129787			rs1320333-A	rs1320333	0	1320333	nearGene-5	0	0.057	8E-6	5.096910013008055	(Urinary creatinine )	    .03	[NR]  mmol/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q22.3	7	105902134	ATXN7L1	CDHR3			222256			rs13438712-G	rs13438712	0	13438712	intron	0	0.2	8E-6	5.096910013008055	(Total energy expenditure )	    .03	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	19	3797102	MATK	MATK			4145			rs12104221-A	rs12104221	0	12104221	intron	0	0.381	3E-8	7.522878745280337	(Total energy expenditure adj for weight )	    .05	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	9p24.1	9	7274696	JMJD2C	ACTG1P14 - RPL4P5	100418910	158345		      439.12	      202.26	rs1887867-G	rs1887867	0	1887867	Intergenic	1	0.405	1E-6	5.999999999999999	(Total energy expenditure RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7q21.3	7	96001884	DYNC1I1	DYNC1I1			1780			rs1488515-C	rs1488515	0	1488515	intron	0	0.225	2E-6	5.698970004336018	(Total energy expenditure RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	7p21.3	7	7825120	LOC729852	RPA3OS			729852			rs12702661-A	rs12702661	0	12702661	intron	0	0.273	2E-6	5.698970004336018	(Total energy expenditure RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6q15	6	89971747	BACH2	BACH2			60468			rs6917758-C	rs6917758	0	6917758	intron	0	0.145	3E-6	5.522878745280337	(BMR )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	15	89073850	ABHD2	LOC102724566			102724566			rs420017-A	rs420017	0	420017	intron	0	0.336	8E-6	5.096910013008055	(BMR )	    .04	[NR]  kcal/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.31	10	18493951	CACNB2	CACNB2			783			rs8181477-C	rs8181477	0	8181477	intron	0	0.419	1E-6	5.999999999999999	(BMR RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	2	218219810	ARPC2	ARPC2			10109			rs6733051-A	rs6733051	0	6733051	intron	0	0.01	2E-6	5.698970004336018	(BMR RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	14	95544252	GLRX5	GLRX5			51218			rs7120-A	rs7120	0	7120	UTR-3	0	0.277	2E-6	5.698970004336018	(BMR RQ)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.3	15	52911104	RPSAP55, EEF1A1P22	RPSAP55 - EEF1A1P22	388122	645693		       24.56	       26.04	rs2414208-G	rs2414208	0	2414208	Intergenic	1	0.0040	2E-6	5.698970004336018	(BMR RQ)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q24.1	16	86647425	FOXL1	FOXL1 - RPL39P30	2300	100271519		       65.73	      620.71	rs1867485-G	rs1867485	0	1867485	Intergenic	1	0.395	3E-6	5.522878745280337	(BMR RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.1	2	230171029	SP110	SP110			3431			rs13010639-A	rs13010639	0	13010639	intron	0	0.085	6E-6	5.221848749616356	(BMR RQ)	    .04	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p21.31	6	35088666	ANKS1A	ANKS1A			23294			rs2005-A	rs2005	0	2005	UTR-3	0	0.089	7E-6	5.154901959985742	(BMR RQ)	    .03	[NR]  unit increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	8q24.21	8	126889758	FAM84B	FAM84B - PCAT1	157638	100750225		      331.29	      123.40	rs4871750-A	rs4871750	0	4871750	Intergenic	1	0.383	4E-7	6.397940008672037	(Bone mineral content )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	18	8966146	RPS4XP19	MTCL1 - RPS4XP19	23255	645573		      133.37	       53.85	rs10502386-A	rs10502386	0	10502386	Intergenic	1	0.373	1E-6	5.999999999999999	(Bone mineral content )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	10	16706611	RSU1	RSU1			6251			rs7916663-A	rs7916663	0	7916663	intron	0	0.184	2E-6	5.698970004336018	(Bone mineral content )	    .04	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q12.3	22	36812105	PVALB	PVALB			5816			rs739031-C	rs739031	0	739031	intron	0	0.205	2E-6	5.698970004336018	(Bone mineral content )	    .03	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.2	13	34328955	RFC3	VDAC1P12 - LINC00457	100874289	100874179		      245.65	      106.50	rs571411-G	rs571411	0	571411	Intergenic	1	0.015	3E-6	5.522878745280337	(Bone mineral content )	    .02	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	1	61914626	INADL	INADL			10207			rs1056513-A	rs1056513	0	1056513	missense	0	0.495	7E-6	5.154901959985742	(Bone mineral content )	    .02	[NR]  kg increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.3	18	42357544	PIK3C3	LINC00907			284260			rs9304270-A	rs9304270	0	9304270	intron	0	0.122	2E-6	5.698970004336018	(C-peptide )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	14	94505905	SERPINA12	SERPINA12			145264			rs11627075-A	rs11627075	0	11627075	intron	0	0.046	3E-6	5.522878745280337	(C-peptide )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.11	13	21241730	ESRRAP2	MRPL57 - ESRRAP2	78988	144832		       62.65	       18.36	rs17064136-A	rs17064136	0	17064136	Intergenic	1	0.037	4E-6	5.397940008672037	(C-peptide )	    .04	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q12	12	40373560	LRRK2	LRRK2 - MUC19	120892	283463		        4.28	       19.83	rs10467147-A	rs10467147	0	10467147	Intergenic	1	0.196	5E-6	5.301029995663981	(C-peptide )	    .03	[NR]  ng/mL increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	2	175919410	KIAA1715	EXTL2P1 - KIAA1715	100287682	80856		       76.11	        6.27	rs1020410-G	rs1020410	0	1020410	Intergenic	1	0.268	6E-7	6.221848749616355	(Calorimeter activity )	    .04	[NR]  counts/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	1	23974359	SRSF10, PNRC2	SRSF10			10772			rs6667686-G	rs6667686	0	6667686	intron	0	0.272	2E-6	5.698970004336018	(Calorimeter activity )	    .04	[NR] counts/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.32	1	3752792	CCDC27	CCDC27			148870			rs76597070-A	rs76597070	0	76597070	missense	0	0.0050	3E-6	5.522878745280337	(Calorimeter activity )	    .03	[NR]  counts/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.31	12	5872187	ANO2	ANO2			57101			rs7307889-A	rs7307889	0	7307889	intron	0	0.026	3E-6	5.522878745280337	(Calorimeter activity )	    .04	[NR]  counts/d increase	Illumina [899,892]	N
04/09/2013	23251661	Comuzzie AG	12/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23251661	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	6p22.3	6	20382369	E2F3	MBOAT1 - E2F3	154141	1871		      169.91	       19.54	rs1570155-A	rs1570155	0	1570155	Intergenic	1	0.391	4E-6	5.397940008672037	(Calorimeter activity )	    .04	[NR]  counts/d increase	Illumina [899,892]	N
02/28/2013	23207651	Davies G	12/04/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23207651 	A genome-wide association study implicates the APOE locus in nonpathological cognitive ageing.	Cognitive decline	3,280 European ancestry individuals	1,367 European ancestry individuals	19q13.32	19	44892362	TOMM40	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	NR	2E-8	7.698970004336018		    .20	[0.12-0.28] unit decrease	Illumina (549,692)	N
03/05/2013	23181788	Lasky-Su J	12/04/2012	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/23181788 	HLA-DQ strikes again: genome-wide association study further confirms HLA-DQ in the diagnosis of asthma among adults.	Asthma	Up to 1,238 European ancestry cases, up to 2,617 European ancestry controls 	Up to 1,837 European ancestry cases, up to 3,803 European ancestry controls, up to 2,806 cases, up to 2,150 controls, up to 603 Costa Rican ancestry cases and their parents	6p21.32	6	32636595	HLA-DQA1	HLA-DQA1			3117			rs9272346-?	rs9272346	0	9272346	nearGene-5	0	NR	2E-8	7.698970004336018	(Adult)	NR	NR	Affymetrix (455,089)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	8p21.2	8	24521228	ADAM7	ADAM7 - NEFM	8756	4741		        8.47	      392.53	rs11781622-?	rs11781622	0	11781622	Intergenic	1	0.14	3E-6	5.522878745280337		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	19p13.11	19	16356948	EPS15L1	EPS15L1			58513			rs875622-?	rs875622	0	875622	intron	0	0.19	4E-6	5.397940008672037		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	7p22.2	7	2875744	CARD11,GNA12	GNA12 - CARD11	2768	84433		       31.42	       30.33	rs6977940-?	rs6977940	0	6977940	Intergenic	1	0.11	5E-6	5.301029995663981		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	18q12.1	18	27490391	AK127888	PA2G4P3 - CDH2	619212	1000		       36.58	      460.58	rs4800279-?	rs4800279	0	4800279	Intergenic	1	0.06	5E-6	5.301029995663981		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	3p26.2	3	3157951	CRBN	CRBN			51185			rs1669338-?	rs1669338	0	1669338	intron	0	0.17	6E-6	5.221848749616356		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	2p25.3	2	2586609	Intergenic	MYT1L-AS1 - LINC01250	730811	101927554		      259.50	      308.44	rs2598592-?	rs2598592	0	2598592	Intergenic	1	0.39	7E-6	5.154901959985742		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	20p13	20	2820155	TMEM239, C20orf141	TMEM239	100288797	64773	100288797	        3.00	       15.16	rs7360412-?	rs7360412	0	7360412		0	0.06	7E-6	5.154901959985742		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (interaction)	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	3q13.32	3	118402488	Intergenic	PTMAP8 - IGSF11	728873	152404		     1375.45	      498.14	rs488628-?	rs488628	0	488628	Intergenic	1	0.21	6E-7	6.221848749616355		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (interaction)	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	3p14.1	3	64900435	MIR548A2, ADAMTS9, AS2	ADAMTS9-AS2			100507098			rs1036797-?	rs1036797	0	1036797	intron	0	0.26	2E-6	5.698970004336018		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (interaction)	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	4q26	4	113458223	CAMK2D	CAMK2D			817			rs1880529-?	rs1880529	0	1880529	intron	0	0.43	4E-6	5.397940008672037		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (interaction)	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	3q28	3	188227136	LPP	LPP			4026			rs1975991-?	rs1975991	0	1975991	intron	0	0.32	6E-6	5.221848749616356		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (interaction)	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	2p25.3	2	2922241	AK095310	LINC01250			101927554			rs17491951-?	rs17491951	0	17491951	intron	0	0.38	7E-6	5.154901959985742		NR	NR	Illumina (565,404)	N
03/05/2013	23218918	Sprooten E	12/04/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/23218918	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (interaction)	70 unaffected relatives of patients with bipolar disorder, 80 controls 	NR	1p21.2	1	99803435	AGL, FRRS1	FRRS1 - RPL39P9	391059	100270894		       36.81	       39.18	rs6689305-?	rs6689305	0	6689305	Intergenic	1	0.19	9E-6	5.045757490560675		NR	NR	Illumina (565,404)	N
03/19/2013	23209189	Tabassum R	12/03/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23209189 	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	2q21.3	2	134722410	TMEM163	TMEM163 - ACMSD	81615	130013		        3.41	      116.02	rs6723108-T	rs6723108	0	6723108	Intergenic	1	0.86	7E-8	7.154901959985742	(All South Asians)	   1.27	[1.17-1.39] 	Illumina [536,420]	N
03/19/2013	23209189	Tabassum R	12/03/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23209189 	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	5q11.2	5	56808481	MAP3K1	RPL26P19 - MAP3K1	441073	4214		      303.37	        6.59	rs10461617-A	rs10461617	0	10461617	Intergenic	1	0.21	4E-6	5.397940008672037	(All South Asians)	   1.17	[1.09-1.25] 	Illumina [536,420]	N
03/19/2013	23209189	Tabassum R	12/03/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23209189 	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	1p22.1	1	91728765	TGFBR3	TGFBR3			7049			rs11165354-A	rs11165354	0	11165354	intron	0	0.78	4E-6	5.397940008672037	(All South Asians)	   1.17	[1.10-1.25] 	Illumina [536,420]	N
03/19/2013	23209189	Tabassum R	12/03/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23209189 	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.30	1E-35	35	(Indo-European South Asians)	   1.51	[1.42-1.62] 	Illumina [536,420]	N
03/19/2013	23209189	Tabassum R	12/03/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23209189 	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	9p21.3	9	22132077	CDKN2A	UBA52P6 - DMRTA1	100130239	63951		      119.54	      314.76	rs2383208-T	rs2383208	0	2383208	Intergenic	1	0.85	3E-6	5.522878745280337	(Indo-European South Asians)	   1.23	[1.13-1.34] 	Illumina [536,420]	N
03/19/2013	23209189	Tabassum R	12/03/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/23209189 	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	0.34	6E-6	5.221848749616356	(Indo-European South Asians)	   1.16	[1.09-1.24] 	Illumina [536,420]	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	3q25.31	3	157080986	CCNL1	KLF3P2 - LINC00880	100124394	339894		      102.87	         .68	rs900400-C	rs900400	0	900400	Intergenic	1	0.39	4E-38	37.39794000867204		    .07	[0.060-0.084] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	22q13.2	22	41940168	CENPM	CENPM			79019			rs5758511-A	rs5758511	0	5758511	STOP-GAIN	0	0.27	3E-6	5.522878745280337		    .03	[0.015-0.039] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	3q21.1	3	123377973	ADCY5	ADCY5			111			rs9883204-C	rs9883204	0	9883204	intron	0	0.76	6E-20	19.22184874961636		    .06	[0.047-0.071] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	12q14.3	12	65964567	HMGA2	HMGA2			8091			rs1042725-T	rs1042725	0	1042725	UTR-3	0	0.50	1E-19	19		    .05	[0.037-0.057] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	6p22.3	6	20703721	CDKAL1	CDKAL1			54901			rs6931514-G	rs6931514	0	6931514	intron	0	0.29	2E-18	17.69897000433602		    .05	[0.038-0.062] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	7q21.3	7	93612328	CALCR	MIR489 - RPS27P17	574442	392748		      128.31	       57.44	rs7780752-T	rs7780752	0	7780752	Intergenic	1	0.64	2E-7	6.698970004336019		    .03	[0.017-0.041] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	5q11.2	5	57876251	Intergenic	ACTBL2 - PGAM1P1	345651	100130514		      393.44	      284.95	rs4432842-C	rs4432842	0	4432842	Intergenic	1	0.30	5E-8	7.30102999566398		    .03	[0.022-0.046] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	4p15.31	4	17991787	LCORL	LCORL			254251			rs724577-C	rs724577	0	724577	intron	0	0.73	5E-11	10.30102999566398		    .04	[0.030-0.054] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	10q25.3	10	114045297	ADRB1	ADRB1			153			rs1801253-G	rs1801253	0	1801253	missense	0	0.26	4E-9	8.397940008672036		    .04	[0.027-0.055] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/28/2013	23202124	Horikoshi M	12/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23202124 	New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	17p13.1	17	7281162	SLC2A4	SLC2A4			6517			rs5415-T	rs5415	0	5415	nearGene-5	0	0.31	5E-6	5.301029995663981		    .03	[0.020-0.048] gram decrease	Illumina & Affymetrix (~2.7 million) imputed	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	18q23	18	79632379	CTDP1, CTD	NFATC1 - FLJ25715	4772	284241		      103.06	        6.55	rs7233060-?	rs7233060	0	7233060	Intergenic	1	NR	3E-7	6.522878745280337	(Positive symptoms)	    .12	[NR] unit increase	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	5q12.3	5	65137573	ADAMTS6, ADAM	CWC27 - ADAMTS6	10283	11174		      118.81	       11.16	rs17206232-?	rs17206232	0	17206232	Intergenic	1	NR	1E-6	5.999999999999999	(Positive symptoms)	    .14	[NR] unit increase	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	13q21.2	13	61391170	PCDH20	MIR3169 - PCDH20	100422973	64881		      191.29	       18.52	rs2323266-?	rs2323266	0	2323266	Intergenic	1	NR	3E-6	5.522878745280337	(Positive symptoms)	    .10	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	10q11.21	10	44331749	CXCL12	LINC00841 - CXCL12	283033	6387		      361.84	       38.40	rs10900020-?	rs10900020	0	10900020	Intergenic	1	NR	3E-6	5.522878745280337	(Positive symptoms)	    .15	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	5q11.2	5	57370673	Intergenic	GPBP1 - SALL4P1	65056	100419717		      105.99	       51.79	rs10052004-?	rs10052004	0	10052004	Intergenic	1	NR	4E-6	5.397940008672037	(Positive symptoms)	    .09	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	4p16.3	4	2393570	ZFYVE28	ZFYVE28			57732			rs959770-?	rs959770	0	959770	intron	0	NR	9E-6	5.045757490560675	(Positive symptoms)	    .12	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	20q13.31	20	57108940	Intergenic	PTMAP6 - BMP7	170542	655		      407.43	       59.81	rs11699237-?	rs11699237	0	11699237	Intergenic	1	NR	3E-6	5.522878745280337	(Negative/disorganized symptoms)	    .12	[NR] unit increase	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	18p11.21	18	11494200	Intergenic	LINC01255			101927433			rs1455244-?	rs1455244	0	1455244	intron	0	NR	3E-6	5.522878745280337	(Negative/disorganized symptoms)	    .06	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	15q22.2	15	61044243	RORA	RORA			6095			rs7172342-?	rs7172342	0	7172342	intron	0	NR	4E-6	5.397940008672037	(Negative/disorganized symptoms)	    .08	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	6p21.32	6	32614112	HLA-DRB1, HLA-DQA1	TRNAI25			100189401			rs4530903-?	rs4530903	0	4530903		0	NR	5E-6	5.301029995663981	(Negative/disorganized symptoms)	    .09	[NR] unit increase	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	12q24.21	12	114267781	Intergenic	GLULP5 - TBX5	100421694	6910		      161.86	       86.15	rs1920592-?	rs1920592	0	1920592	Intergenic	1	NR	1E-6	5.999999999999999	(Mood symptoms)	    .11	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	18q23	18	78152922	Intergenic	LINC01029 - SALL3	101927715	27164		      159.20	      827.35	rs4798896-?	rs4798896	0	4798896	Intergenic	1	NR	4E-6	5.397940008672037	(Mood symptoms)	    .09	[NR] unit increase	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	9q21.13	9	75413430	Intergenic	OSTF1 - OTX2P1	26578	100033409		      265.29	      310.74	rs489332-?	rs489332	0	489332	Intergenic	1	NR	6E-6	5.221848749616356	(Mood symptoms)	    .11	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	3q25.1	3	152045912	Intergenic	SUCNR1 - MBNL1	56670	4154		      163.82	      198.41	rs1351267-?	rs1351267	0	1351267	Intergenic	1	NR	7E-6	5.154901959985742	(Mood symptoms)	    .09	[NR] unit increase	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	1q44	1	245570306	KIF26B	KIF26B			55083			rs10924245-?	rs10924245	0	10924245	intron	0	NR	7E-6	5.154901959985742	(Mood symptoms)	    .17	[NR] unit decrease	Affymetrix [696,491]	N
02/20/2013	23212062	Fanous AH	12/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23212062	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NR	16q13	16	56990405	NLRC5	NLRC5			84166			rs17290922-?	rs17290922	0	17290922	intron	0	NR	8E-6	5.096910013008055	(Mood symptoms)	    .13	[NR] unit decrease	Affymetrix [696,491]	N
02/08/2013	23207799	Deng FY	11/30/2012	Bone	http://www.ncbi.nlm.nih.gov/pubmed/23207799 	Genome-wide association study identified UQCC locus for spine bone size in humans.	Spine bone size	2,286 European ancestry individuals	2,503 European ancestry individuals, 1,627 Han Chinese individuals	20q11.22	20	35326405	UQCC	UQCC1			55245			rs6060373-C	rs6060373	0	6060373	intron	0	0.39	2E-7	6.698970004336019		    .79	 cm^2 increase	Affymetrix [746,709]	N
02/13/2013	23204130	Wheeler HE	11/30/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23204130	Integration of cell line and clinical trial genome-wide analyses supports a polygenic architecture of Paclitaxel-induced sensory peripheral neuropathy.	Paclitaxel-induced neuropathy	77 European ancestry lymphoblastoid cell lines, 87 Yoruba lymphoblastoid cell lines, 83 African American lymphoblastoid cell lines	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	NR [>2 million] (imputed)	N
03/06/2013	23209447	Tang M	11/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23209447	The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove.	Nasopharyngeal carcinoma	up to 1,405 Han Chinese ancestry cases, up to 2,650 Han Chinese ancestry controls	356 Han Chinese ancestry cases, 629 Han Chinese ancestry controls	NR			HLA	 - 						A*11:01-?	A*11:01					NR	2E-19		(NPC vs. Control)	   1.69	[1.52-1.89] 	Affymetrix [591,458]	N
03/06/2013	23209447	Tang M	11/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23209447	The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove.	Nasopharyngeal carcinoma	up to 1,405 Han Chinese ancestry cases, up to 2,650 Han Chinese ancestry controls	356 Han Chinese ancestry cases, 629 Han Chinese ancestry controls	NR			HLA	 - 						*A 11:01-?	A*11:01					NR	2E-16		(NPC vs. EP Controls)	   1.75	[1.54-2] 	Affymetrix [591,458]	N
03/06/2013	23209447	Tang M	11/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23209447	The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove.	Nasopharyngeal carcinoma	up to 1,405 Han Chinese ancestry cases, up to 2,650 Han Chinese ancestry controls	356 Han Chinese ancestry cases, 629 Han Chinese ancestry controls	NR			HLA	 - 						A*11:01-?	A*11:01					NR	3E-14		(NPC vs. EN Controls)	   1.64	[1.45-1.89] 	Affymetrix [591,458]	N
03/06/2013	23209447	Tang M	11/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23209447	The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove.	Nasopharyngeal carcinoma	up to 1,405 Han Chinese ancestry cases, up to 2,650 Han Chinese ancestry controls	356 Han Chinese ancestry cases, 629 Han Chinese ancestry controls	NR			HLA	 - 						B*38:02-?	B*38:02					NR	7E-11		(NPC vs. Control)	   1.67	[1.43-1.94] 	Affymetrix [591,458]	N
03/06/2013	23209447	Tang M	11/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23209447	The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove.	Nasopharyngeal carcinoma	up to 1,405 Han Chinese ancestry cases, up to 2,650 Han Chinese ancestry controls	356 Han Chinese ancestry cases, 629 Han Chinese ancestry controls	NR			HLA	 - 						B*38:02-?	B*38:02					NR	2E-10		(NPC vs. EP Controls)	   1.88	[1.55-2.28] 	Affymetrix [591,458]	N
03/06/2013	23209447	Tang M	11/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23209447	The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove.	Nasopharyngeal carcinoma	up to 1,405 Han Chinese ancestry cases, up to 2,650 Han Chinese ancestry controls	356 Han Chinese ancestry cases, 629 Han Chinese ancestry controls	NR			HLA	 - 						B*55:02-?	B*55:02					NR	5E-10		(NPC vs. EN Controls)	   3.85	[2.5-5.88] 	Affymetrix [591,458]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	14q22.3	14	55866795	LOC645687, PELI2	LINC00520 - PELI2	645687	57161		       70.12	      251.58	rs7350721-C	rs7350721	0	7350721	Intergenic	1	0.09	6E-7	6.221848749616355	(AA, smoking, years)	    .41	[0.25-0.58] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	9q21.11	9	68614263	LOC347097, PIP5K1B	TMEM252 - PIP5K1B	169693	8395		       73.40	       91.07	rs7864204-A	rs7864204	0	7864204	Intergenic	1	0.44	9E-7	6.045757490560675	(AA, Recreational physical activity)	    .04	[0.02-0.06] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	7q36.1	7	148203924	CNTNAP2	CNTNAP2			26047			rs4549702-G	rs4549702	0	4549702	intron	0	0.40	1E-6	5.999999999999999	(AA, Dietary energy)	    .02	[0.01-0.03] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	14q32.31	14	101223708	LOC100128373, DIO3OS	MEG9 - DIO3OS	100507257	64150		      150.77	      328.52	rs8008758-A	rs8008758	0	8008758	Intergenic	1	0.25	3E-6	5.522878745280337	(AA, Alcohol intake)	    .39	[0.23-0.55] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	14q22.3	14	55866795	LOC645687, PELI2	LINC00520 - PELI2	645687	57161		       70.12	      251.58	rs7350721-C	rs7350721	0	7350721	Intergenic	1	0.09	2E-6	5.698970004336018	(AA, Smoking, ever/never)	    .02	[0.01-0.02] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	14q32.13	14	94944192	RPL15P2, DICER1	RPL15P2 - DICER1	326279	23405		      142.67	      142.04	rs10133840-C	rs10133840	0	10133840	Intergenic	1	0.14	1E-6	5.999999999999999	(Hispanic, Dietary energy)	    .01	[0.005-0.01] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	17q25.1	17	73004801	SLC39A11	SLC39A11			201266			rs4969049-C	rs4969049	0	4969049	intron	0	0.17	1E-6	5.999999999999999	(Hispanic, Smoking, ever/never)	    .00	[.002-0.01] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	1p32.3	1	53311959	LRP8	LRP8			7804			rs2788032-C	rs2788032	0	2788032	intron	0	0.08	6E-6	5.221848749616356	(Hispanic, Alcohol intake)	    .15	[0.09-0.22] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	14q32.13	14	94944192	RPL15P2, DICER1	RPL15P2 - DICER1	326279	23405		      142.67	      142.04	rs10133840-C	rs10133840	0	10133840	Intergenic	1	NR	4E-7	6.397940008672037	(Dietary energy)	    .01	[NR] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	6q23.2	6	134223595	SGK1, LOC442261	SGK1			6446			rs1763500-C	rs1763500	0	1763500	intron	0	NR	2E-6	5.698970004336018	(Smoking, years)	    .26	[NR] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	20p12.1	20	12749395	PA2G4P2, SPTLC3	PA2G4P2 - SPTLC3	170533	55304		      367.87	      259.58	rs1413020-G	rs1413020	0	1413020	Intergenic	1	NR	3E-6	5.522878745280337	(Recreational physical activity)	    .02	[NR] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	20p12.1	20	13167505	SPTLC3, LOC100130692	SPTLC3 - ISM1	55304	140862		         .74	       54.27	rs2144134-G	rs2144134	0	2144134	Intergenic	1	NR	4E-6	5.397940008672037	(Alcohol intake)	    .09	[NR] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	18q21.2	18	53379661	DCC	DCC			1630			rs11876941-A	rs11876941	0	11876941	intron	0	NR	5E-6	5.301029995663981	(Smoking, ever/never)	    .00	[NR] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	7q36.1	7	148203924	CNTNAP	CNTNAP2			26047			rs4549702-G	rs4549702	0	4549702	intron	0	0.34	1E-6	5.999999999999999	(Hispanic, Recreational Physical Activity)	    .01	[0.01-0.02] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	21q22.11	21	34326090	LOC100130240, KCNE2	LINC00310 - KCNE2	114036	9992		      136.17	       37.93	rs1013063-T	rs1013063	0	1013063	Intergenic	1	0.38	5E-6	5.301029995663981	(Hispanic, Smoking, years)	    .08	[0.04-0.11] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	13q33.1	13	101575144	ITGBL1	ITGBL1			9358			rs9557704-A	rs9557704	0	9557704	intron	0	0.13	2E-7	6.698970004336019	(AA, Dietary energy)	    .04	[0.03-0.06] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	10q26.3	10	129702676	MGMT	MGMT			4255			rs11016883-C	rs11016883	0	11016883	intron	0	0.25	9E-7	6.045757490560675	(AA, Smoking, Ever/Never)	    .01	[0.01-0.02] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	3p24.3	3	22251079	ZNF385D, LOC728516	ZNF385D			79750			rs1388551-A	rs1388551	0	1388551	intron	0	0.17	2E-6	5.698970004336018	(AA, Recreational physical activity)	    .07	[0.04-0.10] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	2q23.3	2	149652818	LOC642340	LOC101929231			101929231			rs16827293-A	rs16827293	0	16827293	intron	0	0.12	5E-6	5.301029995663981	(AA, Smoking, Years)	    .44	[0.25-0.63] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	4q21.1	4	77034052	SEPT11	SEPT11			55752			rs17002342-T	rs17002342	0	17002342	intron	0	0.13	9E-6	5.045757490560675	(AA, Alcohol intake)	    .61	[0.34-0.88] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	Xp22.2	23	14932409	MOSPD2, LOC100128521	MOSPD2 - TPT1P14	158747	100128521		       10.24	       45.34	rs5980075-T	rs5980075	0	5980075	Intergenic	1	0.47	5E-7	6.30102999566398	(Hispanic, Dietary energy)	    .04	[0.03-0.06] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	3q12.3	3	102129717	LOC152225, ZPLD1	NFKBIZ - ZPLD1	64332	131368		      268.69	       80.26	rs10212363-A	rs10212363	0	10212363	Intergenic	1	0.22	2E-6	5.698970004336018	(Hispanic, Alcohol intake)	    .73	[0.43-1.02] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	1p21.1	1	105887665	CDK4PS, LOC727839	SEPT2P1 - NDE1P1	100873333	100422372		      189.44	      929.99	rs11184708-T	rs11184708	0	11184708	Intergenic	1	0.13	2E-6	5.698970004336018	(Hispanic, Smoking, ever/never)	    .03	[0.02-0.04] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	19q13.32	19	44823511	BCAM, PVRL2	BCAM - PVRL2	4059	5819		        2.09	       22.63	rs1871045-T	rs1871045	0	1871045	Intergenic	1	0.39	4E-6	5.397940008672037	(Hispanic, Smoking, Years)	    .52	[0.30-0.74] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	5q13.1	5	68011634	LOC359819, EE F1B3	RPL21P55 - EEF1B2P2	100271170	1934		      402.47	      147.54	rs10067755-C	rs10067755	0	10067755	Intergenic	1	NR	2E-6	5.698970004336018	(Smoking, Years)	    .12	[NR] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	1p34.3	1	38255991	POU3F1, LOC400750	MIR3659 - TUBB6P1	100500801	100418964		      166.66	      127.86	rs11802770-T	rs11802770	0	11802770	Intergenic	1	NR	3E-6	5.522878745280337	(Smoking, ever/never)	    .01	[NR] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	2q32.1	2	182820835	DNAJC10, FRZB	RPL31P15 - FRZB	100270984	2487		       32.40	       12.44	rs10931041-A	rs10931041	0	10931041	Intergenic	1	NR	9E-6	5.045757490560675	(Dietary energy)	    .02	[NR] unit decrease	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	9q21.33	9	84571490	SLC28A3, NTRK2	SLC28A3 - NTRK2	64078	4915		      202.99	       97.01	rs4877280-T	rs4877280	0	4877280	Intergenic	1	NR	9E-6	5.045757490560675	(Recreational physical activity)	    .04	[NR] unit increase	Affymetrix [706,791]	N
02/14/2013	23192594	Velez Edwards DR	11/29/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23192594 	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (interaction)	8,203 African American women, 3,484 Hispanic ancestry women	NR	11q21	11	96258965	MAML2	MAML2			84441			rs11021499-A	rs11021499	0	11021499	intron	0	NR	2E-6	5.698970004336018	(Alcohol intake)	    .39	[NR] unit decrease	Affymetrix [706,791]	N
02/06/2013	23183491	Nishizawa D	11/27/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23183491 	Genome-wide association study identifies a potent locus associated with human opioid sensitivity.	Opioid sensitivity	118 Japanese ancestry individuals	235 Japanese ancestry individuals	2q33.3	2	207629510	METTL21A,FAM119A	METTL21A - RPS29P9	151194	648343		        3.58	       25.24	rs2952768-C	rs2952768	0	2952768	Intergenic	1	NR	8E-7	6.096910013008056		    .29	 unit increase	Illumina [295,036]	N
02/06/2013	23184150	Henrion M	11/25/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23184150 	Common variation at 2q22.3 (ZEB2) influences the risk of renal cancer.	Renal cell carcinoma	2,215 European ancestry cases, 8,566 European ancestry controls	3,739 European ancestry cases, 8,786 European ancestry controls	2q22.3	2	144450626	ZEB2	ZEB2			9839			rs12105918-?	rs12105918	0	12105918	intron	0	0.056	2E-8	7.698970004336018		   1.45	[1.20-1.75] 	Illumina [284,377]	N
02/06/2013	23184150	Henrion M	11/25/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23184150 	Common variation at 2q22.3 (ZEB2) influences the risk of renal cancer.	Renal cell carcinoma	2,215 European ancestry cases, 8,566 European ancestry controls	3,739 European ancestry cases, 8,786 European ancestry controls	5p13.3	5	32000377	PDZD2	PDZD2			23037			rs10054504-?	rs10054504	0	10054504	intron	0	0.11	8E-7	6.096910013008056		   1.37	[1.19-1.58] 	Illumina [284,377]	N
02/13/2013	23180869	Wu C	11/24/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23180869 	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	11p15.4	11	9951515	SBF2	SBF2			81846			rs10500715-T	rs10500715	0	10500715	intron	0	0.63	2E-7	6.698970004336019		   1.32	[1.19-1.47] 	Illumina [2,731,086] (imputed)	N
02/13/2013	23180869	Wu C	11/24/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23180869 	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	18p11.21	18	13366863	c18orf1	LDLRAD4			753			rs12456874-G	rs12456874	0	12456874	intron	0	0.25	6E-7	6.221848749616355		   1.38	[1.22-1.57] 	Illumina [2,731,086] (imputed)	N
02/13/2013	23180869	Wu C	11/24/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23180869 	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	3p26.2	3	3314490	Intergenic	CRBN - SUMF1	51185	285362		      134.77	      468.01	rs9874556-A	rs9874556	0	9874556	Intergenic	1	0.46	4E-6	5.397940008672037		   1.31	[1.17-1.46] 	Illumina [2,731,086] (imputed)	N
02/13/2013	23180869	Wu C	11/24/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23180869 	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	9q33.1	9	115288135	Intergenic	DEC1			50514			rs7853844-A	rs7853844	0	7853844	intron	0	0.17	2E-6	5.698970004336018		   1.43	[1.23-1.65] 	Illumina [2,731,086] (imputed)	N
02/13/2013	23180869	Wu C	11/24/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23180869 	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	10q23.1	10	85980996	GRID1	GRID1			2894			rs10788473-T	rs10788473	0	10788473	intron	0	0.38	3E-6	5.522878745280337		   1.27	[1.15-1.41] 	Illumina [2,731,086] (imputed)	N
02/13/2013	23180869	Wu C	11/24/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23180869 	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	11p15.1	11	18363391	GTF2H1	GTF2H1			2965			rs9783347-A	rs9783347	0	9783347	intron	0	0.30	9E-6	5.045757490560675		   1.36	[1.19-1.56] 	Illumina [2,731,086] (imputed)	N
02/13/2013	23180869	Wu C	11/24/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/23180869 	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	13q21.31	13	63567780	Intergenic	RPL32P28 - LINC00395	100133193	100874157		     1239.38	       99.90	rs1000589-T	rs1000589	0	1000589	Intergenic	1	0.53	3E-6	5.522878745280337		   1.27	[1.15-1.39] 	Illumina [2,731,086] (imputed)	N
02/06/2013	23183192	Deo R	11/23/2012	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/23183192 	Common genetic variation near the connexin-43 gene is associated with resting heart rate in African Americans: a genome-wide association study of 13,372 participants.	Resting heart rate	13,372 African American individuals		6q22.31	6	121793305	GJA1, HMGB3P18	RPL23AP48 - HMGB3P18	728567	644502		      112.85	       64.88	rs9320841-?	rs9320841	0	9320841	Intergenic	1	NR	5E-15	14.30102999566398	Random effects analysis	  13.00	[9.67-16.33] ms increase	Illumina & Affymetrix [2,954,965] (imputed)	N
02/06/2013	23183192	Deo R	11/23/2012	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/23183192 	Common genetic variation near the connexin-43 gene is associated with resting heart rate in African Americans: a genome-wide association study of 13,372 participants.	Resting heart rate	13,372 African American individuals		14q11.2	14	23396676	MYH6	MYH6			4624			rs452036-G	rs452036	0	452036	intron	0	0.38	8E-7	6.096910013008056	Fixed effects analysis	   9.60	[5.68-13.52] ms increase	Illumina & Affymetrix [2,954,965] (imputed)	N
02/08/2013	23180272	Park BL	11/21/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23180272	Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population.	Aspirin exacerbated respiratory disease in asthmatics	117 Korean ancestry cases, 685 Korean ancestry controls	142 Korean ancestry cases, 996 Korean ancestry controls 	6p21.32	6	33080884	HLA-DPB1	HLA-DPA1;HLA-DPB1			3113;3115			rs1042151-G	rs1042151	0	1042151	nearGene-5;missense	0	0.083	5E-7	6.30102999566398		   2.40	[1.68-3.42] 	Illumina [430,486]	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	1q23.3	1	162064100	NOS1AP	OLFML2B - NOS1AP	25903	9722		       39.72	        5.69	rs12143842-C	rs12143842	0	12143842	Intergenic	1	0.80	2E-15	14.69897000433602		   3.14	[2.38-3.90] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	13q21.31	13	62862667	NR	RPL32P28 - LINC00395	100133193	100874157		      534.27	      805.02	rs2204037-A	rs2204037	0	2204037	Intergenic	1	0.39	5E-7	6.30102999566398		   1.38	[0.85-1.91] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	11p15.5	11	2464890	NR	KCNQ1			3784			rs16928297-G	rs16928297	0	16928297	intron	0	0.51	2E-6	5.698970004336018		   1.25	[0.74-1.76] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	5p15.33	5	3092078	NR	C5orf38 - LINC01019	153571	285577		      336.68	      325.07	rs6873793-C	rs6873793	0	6873793	Intergenic	1	0.40	1E-6	5.999999999999999		   1.47	[0.88-2.06] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	17p12	17	15289739	NR	MIR4731 - TEKT3	100616125	64518		       38.04	       14.07	rs1380181-A	rs1380181	0	1380181	Intergenic	1	0.2	3E-7	6.522878745280337		   1.97	[1.23-2.71] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	15q21.2	15	50581147	NR	TRPM7			54822			rs2414059-A	rs2414059	0	2414059	intron	0	0.51	2E-6	5.698970004336018		   1.24	[0.73-1.75] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	4q13.3	4	71261172	NR	SLC4A4			8671			rs2579330-C	rs2579330	0	2579330	intron	0	0.38	1E-6	5.999999999999999		   1.36	[0.81-1.91] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	7q22.1	7	101238122	NR	CLDN15			24146			rs3757458-A	rs3757458	0	3757458	UTR-5	0	0.01	2E-6	5.698970004336018		   8.00	[4.77-11.23] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	6q22.31	6	118467489	PLN	CEP85L			387119			rs11752626-G	rs11752626	0	11752626	intron	0	0.74	2E-6	5.698970004336018		   1.56	[0.93-2.19] unit decrase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	5q23.2	5	126697272	NR	TEX43 - HSPE1P10	389320	100288235		       60.99	       40.50	rs1546498-C	rs1546498	0	1546498	Intergenic	1	0.61	2E-6	5.698970004336018		   7.69	[4.57-10.81] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	2q31.2	2	178383693	NR	OSBPL6			114880			rs7580640-C	rs7580640	0	7580640	intron	0	0.80	3E-6	5.522878745280337		   3.64	[2.13-5.15] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	3p26.1	3	8209103	NR	GRM7 - LMCD1-AS1	2917	100288428		      467.57	       12.04	rs9866825-A	rs9866825	0	9866825	Intergenic	1	0.41	8E-6	5.096910013008055		   1.18	[0.67-1.69] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	4p15.2	4	27192449	NR	STIM2 - MRPL51P1	57620	351773		      167.07	      230.48	rs13149020-A	rs13149020	0	13149020	Intergenic	1	0.45	8E-6	5.096910013008055		  10.69	[6.06-15.32] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	21q22.13	21	36563371	NR	CLDN14			23562			rs9984896-A	rs9984896	0	9984896	intron	0	0.85	5E-6	5.301029995663981		   2.85	[1.63-4.07] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	7q36.1	7	150972888	KCNH2	KCNH2			3757			rs3778872-C	rs3778872	0	3778872	intron	0	0.64	3E-6	5.522878745280337		   1.77	[1.04-2.50] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	1q24.2	1	169104108	ATP1B1	LOC101928596			101928596			rs1320976-A	rs1320976	0	1320976	ncRNA	0	0.25	2E-10	9.698970004336017		   2.06	[1.43-2.69] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	16p13.13	16	11597897	LITAF	LITAF - SNN	9516	8303		       10.43	       70.54	rs8049607-C	rs8049607	0	8049607	Intergenic	1	0.52	7E-7	6.154901959985743		   1.63	[0.98-2.28] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	5q12.3	5	65121851	NR	CWC27 - ADAMTS6	10283	11174		      103.09	       26.89	rs7729539-C	rs7729539	0	7729539	Intergenic	1	0.20	1E-6	5.999999999999999		   2.59	[1.55-3.63] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	3p26.2	3	3106297	NR	IL5RA			3568			rs17879755-C	rs17879755	0	17879755	intron	0	0.91	2E-6	5.698970004336018		   5.64	[3.37-7.91] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	11p15.5	11	2731379	KCNQ1	KCNQ1			3784			rs231906-A	rs231906	0	231906	intron	0	0.64	2E-6	5.698970004336018		   1.51	[0.88-2.14] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	3p13	3	73491467	NR	PDZRN3			23024			rs4557101-C	rs4557101	0	4557101	intron	0	0.22	4E-6	5.397940008672037		   1.72	[0.99-2.45] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	4q22.3	4	94722806	NR	PDLIM5 - BMPR1B	10611	658		       54.58	       35.17	rs10027628-C	rs10027628	0	10027628	Intergenic	1	0.26	6E-6	5.221848749616356		   1.81	[1.05-2.57] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	3p13	3	71066600	NR	FOXP1			27086			rs7616330-A	rs7616330	0	7616330	intron	0	0.22	6E-6	5.221848749616356		   1.72	[0.99-2.45] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	5q21.1	5	103423957	NR	C5orf30 - NUDT12	90355	83594		      145.30	      124.90	rs17155315-G	rs17155315	0	17155315	Intergenic	1	0.63	7E-6	5.154901959985742		   4.73	[2.69-6.77] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	2p21	2	45949823	NR	PRKCE			5581			rs6751349-A	rs6751349	0	6751349	intron	0	0.36	8E-6	5.096910013008055		   1.22	[0.69-1.75] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	4q13.3	4	75105711	NR	PARM1 - RCHY1	25849	25898		       55.60	      373.33	rs1426063-A	rs1426063	0	1426063	Intergenic	1	0.55	8E-6	5.096910013008055		   1.18	[0.67-1.69] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	13q33.1	13	101900898	NR	FGF14			2259			rs9557754-G	rs9557754	0	9557754	intron	0	0.62	8E-6	5.096910013008055		   1.23	[0.70-1.76] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	10p11.23	10	30545703	NR	HNRNPA1P32 - LYZL2	645940	119180		       26.84	       66.08	rs11008099-A	rs11008099	0	11008099	Intergenic	1	0.11	9E-6	5.045757490560675		   2.74	[1.54-3.94] unit increase	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23166209	Smith JG	11/19/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23166209	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NR	18q23	18	77023179	NR	MBP			4155			rs11663697-G	rs11663697	0	11663697	intron	0	0.74	9E-6	5.045757490560675		  13.71	[7.75-19.67] unit decrease	Affymetrix & Illumina [2.8 million] (imputed)	N
01/30/2013	23160099	Justice CM	11/18/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23160099	A genome-wide association study identifies susceptibility loci for nonsyndromic sagittal craniosynostosis near BMP2 and within BBS9.	Sagittal craniosynostosis	130 European ancestry trios	172 Other ancestry cases, 548 Other ancestry controls	20p12.3	20	7125642	BMP2	BMP2 - MIR8062	650	102465865		      345.38	      245.97	rs1884302-C	rs1884302	0	1884302	Intergenic	1	0.30	1E-39	38.99999999999999		   4.38	[3.51-5.45] 	Illumina [915,307]	N
01/30/2013	23160099	Justice CM	11/18/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23160099	A genome-wide association study identifies susceptibility loci for nonsyndromic sagittal craniosynostosis near BMP2 and within BBS9.	Sagittal craniosynostosis	130 European ancestry trios	172 Other ancestry cases, 548 Other ancestry controls	7p14.3	7	33216427	BBS9	BBS9			27241			rs10262453-A	rs10262453	0	10262453	intron	0	0.69	6E-20	19.22184874961636		   4.17	[3.13-5.88] 	Illumina [915,307]	N
01/31/2013	23151678	Takata R	11/15/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23151678	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NR	5p13.2	5	36308995	RANBP3L	RANBP3L - RNA5SP181	202151	100873443		        7.09	      176.35	rs16902947-A	rs16902947	0	16902947	Intergenic	1	0.01	1E-7	7		  19.48	[12.54-26.42] unit increase	Illumina [481,678]	N
01/31/2013	23151678	Takata R	11/15/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23151678	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NR	7q22.3	7	106954440	Intergenic	PIK3CG - PRKAR2B	5294	5577		       45.46	       90.29	rs7779057-C	rs7779057	0	7779057	Intergenic	1	0.02	2E-7	6.698970004336019		  17.16	[10.93-23.39] unit increase	Illumina [481,678]	N
01/31/2013	23151678	Takata R	11/15/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23151678	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NR	7p21.2	7	16287021	ISPD	ISPD			729920			rs35681285-T	rs35681285	0	35681285	intron	0	0.02	4E-7	6.397940008672037		  16.75	[10.50-23.00] unit increase	Illumina [481,678]	N
01/31/2013	23151678	Takata R	11/15/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23151678	Impact of four loci on serum tamsulosin hydrochloride concentration.	Serum tamsulosin hydrochloride concentration	182 Japanese ancestry individuals	NR	8p21.3	8	20768810	Intergenic	RNU3P2 - TMEM97P2	26844	724059		      153.88	      163.81	rs2122469-C	rs2122469	0	2122469	Intergenic	1	0.02	7E-7	6.154901959985743		  18.57	[11.49-25.65] unit increase	Illumina [481,678]	N
02/13/2014	23150908	Jonsson T	11/14/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/23150908	Variant of TREM2 associated with the risk of Alzheimer's disease.	Alzheimer's disease	3,550 European ancestry cases, 8,888 European ancestry controls	694 European ancestry cases, 4,375 European ancestry controls, 1,343 Other ancestry cases, 5,352 Other ancestry controls	6p21.1	6	41161514	TREM2	TREM2			54209			rs75932628-T	rs75932628	0	75932628	missense	0	0.0063	2E-12	11.69897000433602		   2.90	[2.16-3.91] 	NR	N
01/30/2013	23149450	Otowa T	11/13/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23149450	Meta-analysis of genome-wide association studies for panic disorder in the Japanese population.	Panic disorder	718 Japanese ancestry cases, 1,717 Japanese ancestry controls	329 Japanese ancestry cases, 861 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [1.9 million] (imputed)	N
02/01/2013	23143601	Lan Q	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143601	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	3q28	3	189638472	TP63	TP63			8626			rs4488809-C	rs4488809	0	4488809	intron	0	0.42	4E-9	8.397940008672036		   1.19	[1.12-1.26] 	Illumina [596,032]	N
02/01/2013	23143601	Lan Q	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143601	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	5p15.33	5	1286401	TERT, hTERT	TERT			7015			rs2736100-G	rs2736100	0	2736100	intron	0	0.40	4E-27	26.39794000867203		   1.38	[1.30-1.47] 	Illumina [596,032]	N
02/01/2013	23143601	Lan Q	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143601	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	17q24.2	17	67902693	BPTF	BPTF			2186			rs7216064-A	rs7216064	0	7216064	intron	0	0.63	7E-6	5.154901959985742		   1.16	[1.09-1.25] 	Illumina [596,032]	N
02/01/2013	23143601	Lan Q	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143601	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	2q23.3	2	151397404	TNFAIP6, RIF1	MIR4773-2 - RIF1	100616418	55183		       28.99	       12.48	rs10197940-T	rs10197940	0	10197940	Intergenic	1	0.52	5E-6	5.301029995663981		   1.12	[1.06-1.18] 	Illumina [596,032]	N
02/01/2013	23143601	Lan Q	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143601	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	10q25.2	10	112738717	VTI1A	VTI1A			143187			rs7086803-A	rs7086803	0	7086803	intron	0	0.27	4E-18	17.39794000867204		   1.28	[1.21-.1.35] 	Illumina [596,032]	N
02/01/2013	23143601	Lan Q	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143601	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6q22.1	6	117465017	ROS1, DCBLD1	RAP1BP3 - DCBLD1	100132917	285761		       32.96	       17.62	rs9387478-C	rs9387478	0	9387478	Intergenic	1	0.50	4E-10	9.397940008672037		   1.18	[1.11-1.23] 	Illumina [596,032]	N
02/01/2013	23143601	Lan Q	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143601	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	6p21.32[rs2395185]; 6p21.32[rs28366298]			HLA class II	 - 						rs2395185-T	rs2395185, rs28366298					0.35	1E-8			   1.17	[1.11-1.23] 	Illumina [596,032]	N
01/23/2013	23143602	Whitcomb DC	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143602	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	7q34	7	142749077	PRSS1, PRSS2	PRSS1			5644			rs10273639-C	rs10273639	0	10273639	nearGene-5	0	0.576	2E-14	13.69897000433602		   1.36	[1.30-1.42] 	Illumina (625,739)	N
01/23/2013	23143602	Whitcomb DC	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143602	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	Xq22.3	23	107001537	CLDN2, MORC4, RIPPLY1, TBC1D8B	MORC4			79710			rs12688220-T	rs12688220	0	12688220	nearGene-5	0	0.261	2E-22	21.69897000433602		   1.39	[1.28-1.49] 	Illumina (625,739)	N
01/23/2013	23143602	Whitcomb DC	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143602	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	8q24.12	8	118753955	NR	SAMD12-AS1 - RPS26P35	552860	441377		       27.89	        7.81	rs11988997-T	rs11988997	0	11988997	Intergenic	1	0.071	6E-6	5.221848749616356		   1.36	[1.21-1.50] 	Illumina (625,739)	N
01/23/2013	23143602	Whitcomb DC	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143602	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	10p11.23	10	30230903	NR	LOC101929279			101929279			rs2995271-T	rs2995271	0	2995271	intron	0	0.762	8E-7	6.096910013008056		   1.27	[1.20-1.34] 	Illumina (625,739)	N
01/23/2013	23143602	Whitcomb DC	11/11/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23143602	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	Xq22.3	23	106250703	NR	MUM1L1 - NAP1L4P2	139221	100874319		       41.75	      216.08	rs379742-T	rs379742	0	379742	Intergenic	1	0.200	6E-7	6.221848749616355		   1.20	[1.10-1.30] 	Illumina (625,739)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	20q13.31	20	57853649	PMEPA1, PCK1, ZBP1	PMEPA1 - MIR4532	56937	100616353		      142.11	       41.75	rs12481680-?	rs12481680	0	12481680	Intergenic	1	NR	2E-7	6.698970004336019	(Baseline)	    .22	[0.14-0.30] ng/dL increase	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	9q21.13	9	76226485	PCSK5	PCSK5			5125			rs10746997-?	rs10746997	0	10746997	intron	0	NR	1E-6	5.999999999999999	(Baseline)	    .14	[0.081-0.199] ng/dL decrease	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	22q13.2	22	43239567	SCUBE1	SCUBE1			80274			rs5751452-?	rs5751452	0	5751452	intron	0	NR	2E-6	5.698970004336018	(Baseline)	    .31	[0.19-0.43] ng/dL decrease	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	12q24.31	12	124035299	Intergenic	ZNF664-FAM101A			100533183			rs1716403-?	rs1716403	0	1716403	intron	0	NR	2E-6	5.698970004336018	(Baseline)	    .14	[0.081-0.199] ng/dL decrease	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	2p25.3	2	663483	TMEM18	FAM150B - TMEM18	285016	129787		      374.62	        4.49	rs12999373-?	rs12999373	0	12999373	Intergenic	1	NR	3E-6	5.522878745280337	(Baseline)	    .14	[0.081-0.199] ng/dL decrease	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	16q23.3	16	82451646	CDH13	MPHOSPH6 - CDH13	10200	1012		      281.42	      175.15	rs8053728-?	rs8053728	0	8053728	Intergenic	1	NR	6E-6	5.221848749616356	(Baseline)	    .18	[0.10-0.26] ng/dL decrease	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	12q24.13	12	113169697	DDX54, TPCN1, SLC24A6, OAS1, OAS2, OAS3	DDX54			79039			rs2384207-?	rs2384207	0	2384207	intron	0	NR	5E-8	7.30102999566398	(Response)	    .06	[0.040-0.080] ng/dL increase	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	11q13.4	11	70660101	SHANK2	SHANK2			22941			rs525304-?	rs525304	0	525304	intron	0	NR	3E-6	5.522878745280337	(Response)	    .04	[0.024-0.056] ng/dL increase	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	6q23.2	6	131737807	ENPP3	ENPP3			5169			rs12199015-?	rs12199015	0	12199015	intron	0	NR	5E-6	5.301029995663981	(Response)	    .09	[0.051-0.129] ng/dL increase	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	15q21.1	15	45508837	SLC30A4	SLC30A4			7782			rs950027-?	rs950027	0	950027	intron	0	NR	5E-6	5.301029995663981	(Response)	    .04	[0.024-0.056] ng/dL decrease	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	5p13.1	5	41233944	C6	C6			729			rs7443270-?	rs7443270	0	7443270	intron	0	NR	5E-6	5.301029995663981	(Response)	    .04	[0.022-0.058] ng/dL increase	Affymterix [2,543,887] (imputed)	N
01/29/2013	23149075	Aslibekyan S	11/10/2012	Nutr Metab Cardiovasc Dis	http://www.ncbi.nlm.nih.gov/pubmed/23149075	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	9p24.1	9	7043455	KDM4C	KDM4C			23081			rs16925187-?	rs16925187	0	16925187	intron	0	NR	5E-6	5.301029995663981	(Response)	    .10	[0.061-0.139] ng/dL increase	Affymterix [2,543,887] (imputed)	N
02/06/2013	23146381	Levin AM	11/10/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23146381	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels 	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterites	3p14.1	3	67366681	SUCLG2	SUCLG2			8801			rs2363709-G	rs2363709	0	2363709	intron	0	NR	5E-6	5.301029995663981		    .12	[0.07-0.17] unit decrease	Affymetrix and Illumina [NR] (imputed)	N
02/06/2013	23146381	Levin AM	11/10/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23146381	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels 	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterites	6p21.32	6	32690533	HLA-DQB1	TRNAI25			100189401			rs9469220-G	rs9469220	0	9469220		0	NR	2E-7	6.698970004336019		    .09	[0.05-0.12] unit decrease	Affymetrix and Illumina [NR] (imputed)	N
02/06/2013	23146381	Levin AM	11/10/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23146381	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels 	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterites	16q22.1	16	69796425	WWP2	WWP2			11060			rs6499255-A	rs6499255	0	6499255	intron	0	NR	1E-6	5.999999999999999		    .11	[0.07-0.15] unit increase	Affymetrix and Illumina [NR] (imputed)	N
02/06/2013	23146381	Levin AM	11/10/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/23146381	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels 	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterites	6p21.32	6	32713500	HLA-DQA2	TRNAI25			100189401			rs2858331-G	rs2858331	0	2858331		0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix and Illumina [NR] (imputed)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	11q12.3	11	62419070	SCGB1A1	SCGB1A1			7356			rs3741240-A	rs3741240	0	3741240	UTR-5	0	0.36	1E-26	26	(CC16)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	11q12.3	11	62429955	AHNAK	SCGB1A1 - AHNAK	7356	79026		        6.75	        3.59	rs2077224-A	rs2077224	0	2077224	Intergenic	1	0.38	2E-14	13.69897000433602	(CC16)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	11q12.3	11	62335948	ASRGL1	ASRGL1			80150			rs2463822-T	rs2463822	0	2463822	nearGene-5	0	0.12	1E-10	10	(CC16)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	11q12.3	11	62432345	AHNAK	SCGB1A1 - AHNAK	7356	79026		        9.14	        1.20	rs17157266-C	rs17157266	0	17157266	Intergenic	1	0.18	1E-9	8.999999999999998	(CC16)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	11p13	11	34784302	APIP, EHF	NDUFB8P3 - APIP	100132286	51074		       74.04	       97.99	rs7929679-G	rs7929679	0	7929679	Intergenic	1	0.49	7E-9	8.154901959985743	(CC16)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q22.3	10	79976225	SFTPD	SFTPD - ZNRF2P3	6441	100130879		       27.12	        5.25	rs3923564-G	rs3923564	0	3923564	Intergenic	1	0.04	2E-27	26.69897000433602	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	16q24.1	16	84389428	ATP2C2	ATP2C2			9914			rs8048576-A	rs8048576	0	8048576	intron	0	0.12	9E-13	12.04575749056067	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q22.3	10	80088158	RP11-369J21.2	TMEM254			80195			rs728616-T	rs728616	0	728616	intron	0	0.08	2E-12	11.69897000433602	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q22.3	10	80122614	RP11-369J21.4	TMEM254 - RPL22P18	80195	100271290		       30.06	        3.33	rs3851050-C	rs3851050	0	3851050	Intergenic	1	0.41	1E-11	11	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q22.3	10	80028348	RP11-369J21.5, RP11-369J21.6	C1DP3 - C1DP2	642521	642538		        3.11	        3.26	rs12220777-C	rs12220777	0	12220777	Intergenic	1	0.08	7E-11	10.15490195998574	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q22.3	10	80173992	ANXA11	ANXA11			311			rs6585424-G	rs6585424	0	6585424	intron	0	0.13	1E-10	10	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	6p21.33	6	31272654	HLA-C	HLA-C			3107;101929772			rs2074488-T	rs2074488	0	2074488	nearGene-5;intron	0	0.13	2E-10	9.698970004336017	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	6p21.33	6	31379045	FGFR3P	TRNAI25			100189401			rs9266629-C	rs9266629	0	9266629		0	0.21	4E-10	9.397940008672037	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q22.3	10	79945677	SFTPD	SFTPD			6441			rs7078012-T	rs7078012	0	7078012	intron	0	0.13	5E-9	8.301029995663981	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q22.3	10	79935194	RP11-479O17.4	MBL1P - SFTPD	8512	6441		       12.08	        2.55	rs1923539-A	rs1923539	0	1923539	Intergenic	1	0.25	5E-9	8.301029995663981	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	6p21.33	6	31139410	PSORS1C1, CCHCR1	PSORS1C1;PSORS1C2			170679;170680			rs1265093-A	rs1265093	0	1265093	intron;nearGene-5	0	0.26	6E-9	8.221848749616356	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	6p21.33	6	31129524	PSORS1C1	PSORS1C1			170679			rs3130559-T	rs3130559	0	3130559	intron	0	0.2	8E-9	8.096910013008056	(SP-D)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	18q22.3	18	74211282	AC090398.2	TIMM21 - CYB5A	29090	1528		       52.31	       42.01	rs9951925-C	rs9951925	0	9951925	Intergenic	1	0.47	2E-6	5.698970004336018	(FG)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	4q31.3	4	154560137	FGB	PLRG1 - FGB	5356	2244		        9.70	        2.84	rs4508864-T	rs4508864	0	4508864	Intergenic	1	0.22	6E-6	5.221848749616356	(FG)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	5q31.2	5	139471320	AC138517.1	ECSCR - TMEM173	641700	340061		        8.59	        4.21	rs13181561-G	rs13181561	0	13181561	Intergenic	1	0.27	6E-6	5.221848749616356	(FG)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	21q21.1	21	16295399	C21orf34	LINC00478			388815			rs2823743-C	rs2823743	0	2823743	intron	0	0.14	1E-6	5.999999999999999	(IL6)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	10q26.3	10	132144257	JAKMIP3	JAKMIP3			282973			rs954820-C	rs954820	0	954820	intron	0	0.44	4E-6	5.397940008672037	(IL6)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	1p36.21	1	15021144	RP1-21O18.1	KAZN			23254			rs6667220-G	rs6667220	0	6667220	intron	0	0.26	8E-6	5.096910013008055	(IL6)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	3p25.1	3	13816472	WNT7A	LINC00620 - WNT7A	285375	7476		       69.84	        2.11	rs1124480-C	rs1124480	0	1124480	Intergenic	1	0.46	9E-6	5.045757490560675	(IL6)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	8q24.12	8	118818441	KB-1137H10.1	RPS26P35 - TNFRSF11B	441377	4982		       56.22	      105.12	rs903614-C	rs903614	0	903614	Intergenic	1	0.1	3E-6	5.522878745280337	(IL8)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	12q24.31	12	121184501	P2RX7	P2RX7			5027			rs3751143-C	rs3751143	0	3751143	missense	0	0.18	4E-6	5.397940008672037	(IL8)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	8q13.3	8	71357847	EYA1	EYA1			2138			rs7006821-C	rs7006821	0	7006821	intron	0	0.07	5E-6	5.301029995663981	(IL8)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	16q22.2	16	70880081	HYDIN	HYDIN			54768			rs12149070-T	rs12149070	0	12149070	intron	0	0.06	8E-6	5.096910013008055	(IL8)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	4q31.21	4	141084419	RNF150	RNF150			57484			rs10007052-A	rs10007052	0	10007052	intron	0	0.23	1E-7	7	(TNFA)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	14q23.3	14	65398907	FUT8	MIR4708 - FUT8-AS1	100616176	645431		       63.72	       11.69	rs7147624-T	rs7147624	0	7147624	Intergenic	1	0.15	5E-6	5.301029995663981	(TNFA)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	14q22.3	14	56419968	PELI2	PELI2 - TMEM260	57161	54916		      118.45	      159.82	rs17832777-C	rs17832777	0	17832777	Intergenic	1	0.17	6E-6	5.221848749616356	(TNFA)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	11q25	11	132140223	NTM, OPCML	NTM			50863			rs4468361-T	rs4468361	0	4468361	intron	0	0.32	8E-6	5.096910013008055	(TNFA)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	12q24.31	12	120965921	HNF1A, TCF1	RPL12P33 - HNF1A-AS1	643550	283460		       48.64	        3.92	rs7953249-G	rs7953249	0	7953249	Intergenic	1	0.44	1E-6	5.999999999999999	(CRP)	NR	NR	Illumina (588,352)	N
01/30/2013	23144326	Kim DK	11/09/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/23144326	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NR	6q16.1	6	93004087	RP1-23E21.2	ATF1P1 - COPS5P1	100128159	135270		      116.03	       87.71	rs652520-C	rs652520	0	652520	Intergenic	1	0.48	2E-6	5.698970004336018	(CRP)	NR	NR	Illumina (588,352)	N
01/23/2013	23137000	Lin HJ	11/09/2012	Ophthalmic Genet	http://www.ncbi.nlm.nih.gov/pubmed/23137000	Novel susceptibility genes associated with diabetic cataract in a Taiwanese population.	Cataracts in type 2 diabetes	109 Han Chinese ancestry cases, 649 Han Chinese ancestry controls	NA	6p21.31	6	35354986	PPARD	PPARD			5467			rs7744392-G	rs7744392	0	7744392	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [517,401]	N
01/23/2013	23137000	Lin HJ	11/09/2012	Ophthalmic Genet	http://www.ncbi.nlm.nih.gov/pubmed/23137000	Novel susceptibility genes associated with diabetic cataract in a Taiwanese population.	Cataracts in type 2 diabetes	109 Han Chinese ancestry cases, 649 Han Chinese ancestry controls	NA	16q21	16	57529759	CCDC102A	CCDC102A			92922			rs8052123-C	rs8052123	0	8052123	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [517,401]	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	2p14	2	66529844	MEIS1	MEIS1			4211			rs3891585-A	rs3891585	0	3891585	intron	0	0.43	1E-11	11		   2.13	[1.52-2.74] unit increase	Affymetrix & Illumina [2,845,108] (imputed)	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	3p22.2	3	37532533	ITGA9	ITGA9			3680			rs267567-A	rs267567	0	267567	intron	0	0.18	4E-11	10.39794000867204		   2.73	[1.93-3.53] unit increase	Affymetrix & Illumina [2,845,108] (imputed)	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	3p22.2	3	38582762	SCN5A	SCN5A			6331			rs3922844-T	rs3922844	0	3922844	intron	0	0.58	5E-43	42.30102999566397		   4.54	[3.89-5.19] unit decrease	Affymetrix & Illumina [2,845,108] (imputed)	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	4q21.23	4	85762407	ARHGAP24	ARHGAP24			83478			rs11732231-C	rs11732231	0	11732231	intron	0	0.23	3E-9	8.522878745280337		   2.28	[1.52-3.04] unit increase	Affymetrix & Illumina [2,845,108] (imputed)	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	7q31.2	7	116551247	CAV1	CAV1			857			rs11773845-A	rs11773845	0	11773845	intron	0	0.36	4E-12	11.39794000867204		   2.29	[1.64-2.94] unit decrease	Affymetrix & Illumina [2,845,108] (imputed)	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	12q24.21	12	114364333	TBX5	TBX5			6910			rs1895585-A	rs1895585	0	1895585	intron	0	0.30	1E-19	19		   3.19	[2.50-3.88] unit increase	Affymetrix & Illumina [2,845,108] (imputed)	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	3p22.2	3	38639903	SCN5A	SCN5A			6331			rs6763048-A	rs6763048	0	6763048	intron	0	0.73	4E-12	11.39794000867204	(Conditional)	   2.62	[1.88-3.36] unit increase	Affymetrix & Illumina [2,845,108] (imputed)	N
01/18/2013	23139255	Butler AM	11/08/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23139255	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NR	3p22.2	3	38725824	SCN10A	SCN10A			6336			rs6801957-T	rs6801957	0	6801957	intron	0	0.27	9E-9	8.045757490560675	(Conditional)	   3.36	[2.22-4.50] unit increase	Affymetrix & Illumina [2,845,108] (imputed)	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	9p22.1	9	18930224	FAM154A	FAM154A			158297			rs1571228-?	rs1571228	0	1571228	intron	0	NR	2E-7	6.698970004336019	(Dominant model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	2q34	2	210704998	CPS1	CPS1-IT1 - RPS27P10	29034	646233		       85.12	      593.88	rs2371030-G	rs2371030	0	2371030	Intergenic	1	0.091	3E-6	5.522878745280337	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	19p13.3	19	348743	MIER2	MIER2 - THEG	54531	51298		        3.95	       13.01	rs6510725-?	rs6510725	0	6510725	Intergenic	1	NR	3E-6	5.522878745280337	(Dominant model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	6p21.31	6	34956087	ANKS1A	ANKS1A			23294			rs847845-?	rs847845	0	847845	intron	0	NR	6E-6	5.221848749616356	(Dominant model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	14q24.3	14	74899026	DLST	DLST			1743			rs732765-G	rs732765	0	732765	intron	0	0.257	7E-6	5.154901959985742	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	2q22.1	2	137384594	THSD7B	THSD7B			80731			rs13405020-?	rs13405020	0	13405020	intron	0	NR	7E-6	5.154901959985742	(Dominant model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	8q13.3	8	70255759	NCOA2	NCOA2			10499			rs2926702-T	rs2926702	0	2926702	intron	0	0.572	7E-6	5.154901959985742	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	16q21	16	61744191	CDH8	CDH8			1006			rs8048207-T	rs8048207	0	8048207	intron	0	0.121	8E-6	5.096910013008055	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	15q21.3	15	58382470	LIPC	LOC102724766			102724766			rs539901-G	rs539901	0	539901	intron	0	0.109	8E-6	5.096910013008055	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	13q33.1	13	101398739	NALCN	NALCN			259232			rs9557635-A	rs9557635	0	9557635	intron	0	0.146	9E-6	5.045757490560675	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	9q22.32	9	96335245	SLC35D2	SLC35D2			11046			rs6479272-T	rs6479272	0	6479272	intron	0	0.086	9E-6	5.045757490560675	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/25/2013	23144319	Lee Y	11/08/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/23144319	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NR	2p23.3	2	26303551	GPR113	HADHB - GPR113	3032	165082		       13.09	        4.62	rs6753473-G	rs6753473	0	6753473	Intergenic	1	0.052	4E-6	5.397940008672037	(Additive model)	NR	NR	Affymetrix [271,817]	N
01/23/2013	23142968	Betcheva ET	11/07/2012	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/23142968	Whole-genome-wide association study in the Bulgarian population reveals HHAT as schizophrenia susceptibility gene.	Schizophrenia	188 European ancestry cases, 376 European ancestry controls	99 European ancestry cases, 328 European ancestry controls	1q32.2	1	210362681	HHAT	HHAT			55733			rs7527939-C	rs7527939	0	7527939	intron	0	NR	6E-9	8.221848749616356		   2.63	[1.89-3.66] 	Illumina [495,089]	N
08/28/2013	23818313	Kim HJ	11/06/2012	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23818313 	Combined linkage and association analyses identify a novel locus for obesity near PROX1 in Asians.	Obesity	756 Mongolian ancestry individuals from 55 families	1,301 Korean ancestry individuals	5q14.1	5	79803175	CMYA5	CMYA5 - MTX3	202333	345778		        2.95	      173.54	rs259067-A	rs259067	0	259067	Intergenic	1	0.47	1E-6	5.999999999999999	(BMI)	NR	NR	Illumina [567,072]	N
08/28/2013	23818313	Kim HJ	11/06/2012	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23818313 	Combined linkage and association analyses identify a novel locus for obesity near PROX1 in Asians.	Obesity	756 Mongolian ancestry individuals from 55 families	1,301 Korean ancestry individuals	7q31.2	7	114989231	MDFIC	MDFIC			29969			rs7784447-A	rs7784447	0	7784447	intron	0	0.11	4E-6	5.397940008672037	(BMI)	NR	NR	Illumina [567,072]	N
08/28/2013	23818313	Kim HJ	11/06/2012	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/23818313 	Combined linkage and association analyses identify a novel locus for obesity near PROX1 in Asians.	Obesity	756 Mongolian ancestry individuals from 55 families	1,301 Korean ancestry individuals	1q32.3	1	213737151	PROX1	RPL31P13 - PROX1-AS1	100270983	100505832		      308.09	       84.73	rs1704198-A	rs1704198	0	1704198	Intergenic	1	0.19	4E-7	6.397940008672037	(WC)	NR	NR	Illumina [567,072]	N
01/16/2013	23114982	Siegert S	11/02/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23114982	Genome-wide investigation of gene-environment interactions in colorectal cancer.	Colorectal cancer	314 European ancestry cases	259 European ancestry cases, 1,002 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [4,373,163] (imputed)	N
01/22/2013	23047291	Brown CC	11/01/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/23047291	A genome-wide association analysis of temozolomide response using lymphoblastoid cell lines shows a clinically relevant association with MGMT.	Response to temozolomide	516 European ancestry lymphoblastoid cell lines	NR	10q26.3	10	129627758	MGMT	MGMT			4255			rs477692-?	rs477692	0	477692	intron	0	NR	1E-8	8		NR	NR	Illumina [2,074,734] (imputed)	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.44	5E-6	5.301029995663981	(mass)	    .01	[-0.00215-0.01275] ng/ml decrease	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-T	rs3764261	0	3764261	Intergenic	1	0.34	7E-21	20.15490195998574	(mass)	    .02	[0.014-0.030] ng/ml increase	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	6p12.3	6	46714342	PLA2G7	PLA2G7			7941			rs1362931-A	rs1362931	0	1362931	intron	0	0.19	3E-19	18.52287874528033	(activity)	    .02	[0.016-0.030] ng/ml increase	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	11q12.2	11	60230193	MS4A4E	MS4A4E			643680			rs600550-T	rs600550	0	600550	intron	0	0.38	2E-11	10.69897000433602	(activity)	    .01	[0.0068-0.0206] ng/ml decrease	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	19q13.32	19	44912383	APOC1, APOE	APOC1			341			rs445925-T	rs445925	0	445925	nearGene-5	0	0.11	1E-56	56	(activity)	    .07	[0.049-0.093] ng/ml decrease	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	2p24.1	2	21008720	APOB	APOB			338			rs6413458-T	rs6413458	0	6413458	missense	0	0.02	2E-7	6.698970004336019	(mass)	    .04	[0.0088-0.0708] ng/ml decrease	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	1p13.3	1	109274968	SORT1	CELSR2			1952			rs12740374-T	rs12740374	0	12740374	UTR-3	0	0.22	2E-22	21.69897000433602	(activity)	    .03	[0.027-0.042] ng/ml decrease	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	12q24.31	12	124832197	SCARB1	SCARB1			949			rs11057841-T	rs11057841	0	11057841	intron	0	0.15	6E-14	13.22184874961636	(activity)	    .03	[0.019-0.038] ng/ml increase	Illumina [796,174]	N
01/30/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	17q23.1	17	59772890	TMEM49	VMP1			81671			rs11650106-C	rs11650106	0	11650106	intron	0	0.48	3E-9	8.522878745280337	(activity)	    .01	[0.0039-0.0145] ng/ml decrease	Illumina [796,174]	N
01/31/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NR	1q23.3			ABCG2	 - 						rs2199936-A	rs2199936					0.11	2E-10		(percent change)	   2.80	[1.82-3.78] percent decrease	Illumina (796,174)	N
01/31/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NR	6q26	6	160589086	LPA	LPA			4018			rs10455872-G	rs10455872	0	10455872	intron	0	0.05	2E-16	15.69897000433602	(percent change)	   4.80	[0.82-2.78] percent increase	Illumina (796,174)	N
01/31/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NR	1p22.3	1	84802560	EDG7	SSX2IP - LPAR3	117178	23566		      111.80	        9.04	rs10782529-C	rs10782529	0	10782529	Intergenic	1	0.36	4E-6	5.397940008672037	(percent change)	   1.70	[1.11-2.29] percent increase	Illumina (796,174)	N
01/31/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NR	15q25.2	15	82683530	AP3B2	AP3B2;LOC283692			8120;283692			rs11638815-C	rs11638815	0	11638815	intron;intron	0	0.25	1E-6	5.999999999999999	(Change)	   4.10	[2.14-6.06] nmol/min/ml increase	Illumina (796,174)	N
01/31/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NR	14q32.2	14	98033121	C14orf177	C14orf64 - C14orf177	388011	283598		       55.00	      678.49	rs10144042-A	rs10144042	0	10144042	Intergenic	1	0.24	2E-6	5.698970004336018	(percent change)	   1.40	[0.62-2.18] percent decrease	Illumina (796,174)	N
01/31/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NR	15q23	15	69105686	NOX5	LINC00277 - GLCE	283673	26035		        9.86	       54.90	rs1392635-A	rs1392635	0	1392635	Intergenic	1	0.26	2E-6	5.698970004336018	(percent change)	   1.70	[0.92-2.48] percent increase	Illumina (796,174)	N
01/31/2013	23118302	Chu AY	11/01/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/23118302	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NR	17q25.3	17	80350459	RNF213	RNF213			57674			rs12051723-T	rs12051723	0	12051723	intron	0	0.14	3E-6	5.522878745280337	(percent change)	   2.20	[1.22-3.18] percent increase	Illumina (796,174)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	1p31.1	1	78157942	Intergenic	RNA5SP22 - RNFT1P2	100873277	100132264		       63.03	       12.53	rs17391694-C	rs17391694	0	17391694	Intergenic	1	0.889	3E-9	8.522878745280337		   1.13	[1.077-1.194] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	1p13.2	1	113761186	PTPN22,DCLRE1B	PHTF1			10745			rs6679677-C	rs6679677	0	6679677	nearGene-5	0	0.907	2E-15	14.69897000433602		   1.20	[1.129-1.268] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	1p12	1	119908567	ADAM30	ADAM30 - NOTCH2	11085	4853		       12.04	        2.99	rs3897478-T	rs3897478	0	3897478	Intergenic	1	0.891	2E-11	10.69897000433602		   1.16	[1.101-1.224] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	1q24.3	1	172893094	FASLG,TNFSF18	AIMP1P2 - TNFSF18	100873064	8995		        6.84	      148.13	rs9286879-G	rs9286879	0	9286879	Intergenic	1	0.249	6E-22	21.22184874961636		   1.13	[1.083-1.167] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	2p23.3	2	27412596	UCN	FTH1P3 - NRBP1	2498	29959		       19.02	       16.01	rs1728918-A	rs1728918	0	1728918	Intergenic	1	0.299	5E-16	15.30102999566398		   1.12	[1.086-1.16] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	2p15	2	62324337	Intergenic	MIR5192 - TMEM17	100847087	200728		      118.42	      136.56	rs10865331-A	rs10865331	0	10865331	Intergenic	1	0.396	1E-9	8.999999999999998		   1.10	[1.062-1.134] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	2q37.1	2	230232414	SP140	SP140			11262			rs6716753-C	rs6716753	0	6716753	intron	0	0.196	1E-16	16		   1.13	[1.089-1.18] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	2q37.1	2	233264857	ATG16L1, INPP5D	ATG16L1			55054			rs12994997-A	rs12994997	0	12994997	intron	0	0.523	4E-70	69.39794000867204		   1.23	[1.193-1.274] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	4p11	4	48361966	TXK,TEC,SLC10A4	SLAIN2			57606			rs6837335-G	rs6837335	0	6837335	intron	0	0.647	2E-8	7.698970004336018		   1.09	[1.049-1.123] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	4q24	4	101944147	Intergenic	BANK1			55024			rs13126505-A	rs13126505	0	13126505	intron	0	0.096	2E-12	11.69897000433602		   1.17	[1.10-1.248] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	5q11.2	5	56143024	IL6ST,IL31RA	ANKRD55			79722			rs10065637-C	rs10065637	0	10065637	intron	0	0.773	4E-12	11.39794000867204		   1.12	[1.079-1.17] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	5q13.2	5	73255307	Intergenic	TMEM174 - FOXD1	134288	2297		       80.06	      190.95	rs7702331-A	rs7702331	0	7702331	Intergenic	1	0.621	6E-10	9.221848749616356		   1.09	[1.05-1.126] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	5q35.2	5	173910850	CPEB4	CPEB4			80315			rs17695092-T	rs17695092	0	17695092	intron	0	0.703	5E-9	8.301029995663981		   1.10	[1.055-1.136] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	6p22.3	6	21430497	Intergenic	RPL36AP25 - LINC00581	100271331	100874531		      707.93	       55.56	rs12663356-C	rs12663356	0	12663356	Intergenic	1	0.533	4E-12	11.39794000867204		   1.10	[1.06-1.131] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	6p21.33	6	31306603	HLA-C,PSORS1C1,NFKBIL1,MICB	TRNAI25			100189401			rs9264942-C	rs9264942	0	9264942		0	0.378	5E-28	27.30102999566398		   1.15	[1.107-1.184] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	6q22.33	6	127134977	Intergenic	RSPO3			84870			rs9491697-G	rs9491697	0	9491697	intron	0	0.439	4E-10	9.397940008672037		   1.08	[1.042-1.112] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	6q22.33	6	127924620	Intergenic	MRPS17P5 - PTPRK	359758	5796		       14.60	       44.16	rs13204742-T	rs13204742	0	13204742	Intergenic	1	0.124	8E-15	14.09691001300805		   1.17	[1.118-1.23] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	6q25.3	6	159069404	TAGAP	TAGAP - FNDC1	117289	84624		       24.25	       99.99	rs212388-C	rs212388	0	212388	Intergenic	1	0.41	3E-14	13.52287874528034		   1.11	[1.069-1.141] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	7p15.2	7	26852821	Intergenic	SKAP2			8935			rs10486483-A	rs10486483	0	10486483	intron	0	0.247	3E-8	7.522878745280337		   1.09	[1.048-1.13] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	7p15.1	7	28140937	CREB5,JAZF1	JAZF1			221895			rs864745-T	rs864745	0	864745	intron	0	0.497	4E-9	8.397940008672036		   1.09	[1.052-1.123] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	8q21.3	8	89863690	RIPK2	COX6B1P6 - OSGIN2	100462851	734		       39.86	       38.18	rs7015630-T	rs7015630	0	7015630	Intergenic	1	0.739	1E-8	8		   1.08	[1.035-1.116] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	8q24.21	8	128554935	Intergenic	LINC01263 - LINC00977	101927774	728724		      127.02	      661.53	rs6651252-T	rs6651252	0	6651252	Intergenic	1	0.865	1E-16	16		   1.19	[1.128-1.246] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	13q14.11	13	43883789	LACC1	LACC1			144811			rs3764147-G	rs3764147	0	3764147	missense	0	0.248	2E-21	20.69897000433602		   1.16	[1.112-1.199] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	15q14	15	38606989	RASGRP1,SPRED1	RASGRP1 - C15orf53	10125	400359		       42.18	       89.61	rs16967103-C	rs16967103	0	16967103	Intergenic	1	0.203	4E-9	8.397940008672036		   1.09	[1.045-1.132] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	16q12.1	16	50729867	NOD2,ADCY7	NOD2			64127			rs2066847-T	rs2066847	0	2066847	frameshift	0	0.024	6E-209	208.2218487496163		   3.10	[1.497-1.618] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	17q11.2	17	27516617	LGALS9,NOS2	KSR1			8844			rs2945412-A	rs2945412	0	2945412	intron	0	0.587	9E-17	16.04575749056067		   1.14	[1.10-1.175] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	19p13.3	19	1124032	GPX4,HMHA1	SBNO2			22904			rs2024092-A	rs2024092	0	2024092	intron	0	0.215	8E-22	21.09691001300805		   1.16	[1.112-1.201] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	19q13.32	19	46346549	Intergenic	PPP5C			5536			rs4802307-G	rs4802307	0	4802307	nearGene-5	0	0.706	2E-10	9.698970004336017		   1.10	[1.06-1.139] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	19q13.33	19	48702915	DBP,SPHK2,IZUMO1,FUT2	FUT2			2524			rs516246-T	rs516246	0	516246	intron	0	0.483	1E-15	15		   1.11	[1.071-1.143] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls 	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls 	21q22.11	21	33404389	IFNGR2,IFNAR1,IFNAR2,IL10RB,GART,TMEM50B	IFNGR2			3460			rs2284553-G	rs2284553	0	2284553	intron	0	0.599	2E-16	15.69897000433602		   1.12	[1.086-1.162] 	Affyemtrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p36.33	1	1312114	TNFRSF18,TNFRSF4	CPSF3L;PUSL1;MIR6727			54973;126789;102465435			rs12103-A	rs12103	0	12103	cds-synon;intron;nearGene-3	0	0.182	8E-13	12.09691001300806		   1.10	[1.059-1.139] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p36.23	1	7961913	TNFRSF9	PARK7			11315			rs35675666-G	rs35675666	0	35675666	intron	0	0.838	1E-15	15		   1.11	[1.07-1.156] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p36.12	1	22375738	Intergenic	MIR4418 - ZBTB40	100616433	9923		      109.44	       76.11	rs12568930-T	rs12568930	0	12568930	Intergenic	1	0.821	1E-17	17		   1.10	[1.054-1.138] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p31.3	1	67240275	IL23R,IL12RB2	IL23R			149233			rs11209026-G	rs11209026	0	11209026	missense	0	0.933	8E-161	160.096910013008		   2.01	[1.885-2.15] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p31.1	1	70529879	Intergenic	CTH - CASP3P1	1491	100131616		       90.03	      130.78	rs2651244-G	rs2651244	0	2651244	Intergenic	1	0.599	2E-8	7.698970004336018		   1.02	[0.986-1.044] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q21.3	1	151829204	RORC	RORC			6097			rs4845604-G	rs4845604	0	4845604	intron	0	0.857	4E-16	15.39794000867204		   1.14	[1.098-1.192] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q22	1	155908941	UBQLN4,RIT1,MSTO1	RIT1			6016			rs670523-A	rs670523	0	670523	intron	0	0.324	6E-11	10.22184874961635		   1.06	[1.028-1.092] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q23.3	1	160887174	CD48,SLAMF1,ITLN1,CD244,F11R,USF1,SLAMF7,ARHGAP30	ITLN1 - ITLN2	55600	142683		        2.00	       57.85	rs4656958-G	rs4656958	0	4656958	Intergenic	1	0.686	7E-9	8.154901959985743		   1.06	[1.029-1.094] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q23.3	1	161509955	FCGR2A,FCGR2B,FCGR3A,HSPA6,FCGR3B,FCRLA	FCGR2A			2212			rs1801274-A	rs1801274	0	1801274	missense	0	0.509	2E-38	37.69897000433602		   1.12	[1.092-1.157] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q31.3	1	197662011	C1orf53	DENND1B			163486			rs2488389-A	rs2488389	0	2488389	intron	0	0.22	8E-13	12.09691001300806		   1.12	[1.077-1.153] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q32.1	1	200908434	KIF21B	C1orf106			55765			rs7554511-C	rs7554511	0	7554511	intron	0	0.725	1E-32	32		   1.16	[1.128-1.202] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q32.1	1	206766559	IL10,IL20,IL19,IL24,PIGR,MAPKAPK2,FAIM3,RASSF5	RPS14P1 - IL10	100271063	3586		       70.26	        1.04	rs3024505-A	rs3024505	0	3024505	Intergenic	1	0.16	7E-42	41.15490195998574		   1.21	[1.163-1.254] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p23.3	2	24896016	ADCY3	ADCY3			109			rs6545800-T	rs6545800	0	6545800	intron	0	0.445	6E-16	15.22184874961635		   1.11	[1.077-1.141] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p23.2	2	28391927	FOSL2,BRE	FOSL2;FLJ31356			2355;403150			rs925255-C	rs925255	0	925255	nearGene-5;intron	0	0.557	3E-15	14.52287874528034		   1.09	[1.061-1.124] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p21	2	43579779	Intergenic	THADA			63892			rs10495903-T	rs10495903	0	10495903	intron	0	0.13	8E-12	11.09691001300806		   1.09	[1.041-1.131] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p16.1	2	60977721	REL,C2orf74,KIAA1841,AHSA2	PUS10			150962			rs7608910-G	rs7608910	0	7608910	intron	0	0.394	9E-32	31.04575749056067		   1.14	[1.105-1.171] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p14	2	65440138	SPRED2	SPRED2 - RPS15AP15	200734	100130782		        7.50	       71.63	rs6740462-A	rs6740462	0	6740462	Intergenic	1	0.739	2E-8	7.698970004336018		   1.08	[1.046-1.116] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q12.1	2	102454108	IL1R2,IL18RAP,IL18R1,IL1R1,IL1RL1,IL1RL2	MIR4772 - SLC9A4	100616157	389015		       21.74	       18.61	rs917997-T	rs917997	0	917997	Intergenic	1	0.231	3E-20	19.52287874528034		   1.10	[1.067-1.14] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q24.2	2	162254026	IFIH1	FAP - IFIH1	2191	64135		       10.49	       13.05	rs2111485-A	rs2111485	0	2111485	Intergenic	1	0.404	2E-8	7.698970004336018		   1.07	[1.035-1.097] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q32.3	2	191066738	STAT1,STAT4	STAT4			6775			rs1517352-C	rs1517352	0	1517352	intron	0	0.6	3E-11	10.52287874528034		   1.08	[1.046-1.109] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q35	2	218286495	SLC11A1,CXCR2,CXCR1,PNKD,ARPC2,TMBIM1,CTDSP1	PNKD;TMBIM1			25953;64114			rs2382817-A	rs2382817	0	2382817	intron;intron	0	0.408	4E-12	11.39794000867204		   1.07	[1.042-1.104] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q37.3	2	240630275	GPR35	GPR35			2859			rs3749171-T	rs3749171	0	3749171	missense	0	0.167	3E-21	20.52287874528034		   1.14	[1.093-1.177] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	3p24.3	3	18725912	Intergenic	RAD23BP1 - KCNH8	131185	131096		      186.02	      422.54	rs4256159-T	rs4256159	0	4256159	Intergenic	1	0.14	9E-15	14.04575749056067		   1.11	[1.063-1.152] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	3p21.31	3	49684099	MST1,PFKFB4,MST1R,UCN2,GPX1,IP6K2,BSN,IP6K1,USP4	MST1			4485			rs3197999-A	rs3197999	0	3197999	missense	0	0.296	1E-47	47		   1.18	[1.144-1.216] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	4q13.3	4	73991991	CXCL5,CXCL1,CXCL3,IL8,CXCL6,PF4,CXCL2,PF4V1	PPBP - CXCL5	5473	6374		        3.80	        3.65	rs2472649-G	rs2472649	0	2472649	Intergenic	1	0.824	3E-8	7.522878745280337		   1.10	[1.046-1.146] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	4q27	4	122240464	IL2,IL21	KIAA1109			84162			rs7657746-A	rs7657746	0	7657746	intron	0	0.753	3E-13	12.52287874528034		   1.12	[1.08-1.154] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5p15.2	5	10695414	DAP	DAP			1611			rs2930047-C	rs2930047	0	2930047	intron	0	0.382	1E-8	8		   1.07	[1.034-1.096] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5p13.1	5	40410482	PTGER4	LINC00603 - PTGER4	102467077	5734		      357.16	      269.45	rs11742570-C	rs11742570	0	11742570	Intergenic	1	0.605	2E-82	81.69897000433602		   1.20	[1.164-1.234] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q15	5	96917099	ERAP2,ERAP1,LNPEP	ERAP2			64167			rs1363907-A	rs1363907	0	1363907	intron	0	0.411	6E-13	12.22184874961636		   1.07	[1.037-1.099] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q23.3	5	130681594	Intergenic	ARL2BPP4 - RPL11P2	100130265	133629		      151.50	      308.29	rs4836519-T	rs4836519	0	4836519	Intergenic	1	0.768	4E-10	9.397940008672037		   1.07	[1.039-1.106] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q31.1	5	132435113	IRF1,IL13,CSF2,SLC22A4,IL4,IL3,IL5,PDLIM4,SLC22A5,ACSL6	C5orf56			441108			rs2188962-T	rs2188962	0	2188962	intron	0	0.425	1E-52	51.99999999999999		   1.16	[1.125-1.191] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q31.3	5	142133639	SPRY4,NDFIP1	NDFIP1			80762			rs6863411-T	rs6863411	0	6863411	intron	0	0.63	4E-14	13.39794000867204		   1.09	[1.057-1.121] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q33.1	5	150898347	TNIP1,IRGM,ZNF300P1	ZNF300			91975			rs11741861-G	rs11741861	0	11741861	intron	0	0.093	3E-37	36.52287874528034		   1.25	[1.186-1.314] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q33.3	5	159399784	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		       81.62	      516.95	rs6871626-A	rs6871626	0	6871626	Intergenic	1	0.337	1E-42	41.99999999999999		   1.18	[1.146-1.216] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	5q35.3	5	177367190	DOK3	RGS14			10636			rs12654812-A	rs12654812	0	12654812	intron	0	0.335	2E-8	7.698970004336018		   1.07	[1.036-1.10] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6p23	6	14719265	Intergenic	LINC01108 - RPL6P17	102216342	100131229		      433.81	      383.68	rs17119-A	rs17119	0	17119	Intergenic	1	0.786	3E-11	10.52287874528034		   1.07	[1.032-1.11] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6p22.3	6	20812357	Intergenic	CDKAL1			54901			rs9358372-G	rs9358372	0	9358372	intron	0	0.379	9E-14	13.04575749056067		   1.09	[1.057-1.121] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q15	6	90263440	Intergenic	BACH2			60468			rs1847472-C	rs1847472	0	1847472	intron	0	0.655	2E-10	9.698970004336017		   1.06	[1.029-1.092] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q21	6	105987150	Intergenic	RPL35P3 - PRDM1	728010	639		      684.29	       99.17	rs6568421-G	rs6568421	0	6568421	Intergenic	1	0.301	8E-20	19.09691001300806		   1.11	[1.074-1.142] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q21	6	111526988	TRAF3IP2,FYN,REV3L	TRAF3IP2-AS1			643749			rs3851228-T	rs3851228	0	3851228	intron	0	0.073	1E-13	13		   1.15	[1.089-1.219] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q23.3	6	137685367	TNFAIP3	BTF3L4P3 - TNFAIP3	391040	7128		      140.92	      181.82	rs6920220-A	rs6920220	0	6920220	Intergenic	1	0.206	1E-21	21		   1.10	[1.064-1.141] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q24.2	6	143577757	PHACTR2	FUCA2 - PHACTR2	2519	9749		       65.87	       30.42	rs12199775-A	rs12199775	0	12199775	Intergenic	1	0.929	2E-8	7.698970004336018		   1.13	[1.066-1.195] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	6q27	6	166960059	CCR6,RPS6KA2,RNASET2	RNASET2 - MIR3939	8635	100500857		        3.47	       37.75	rs1819333-T	rs1819333	0	1819333	Intergenic	1	0.523	7E-21	20.15490195998574		   1.08	[1.051-1.113] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7p12.2	7	50264865	ZPBP,IKZF1	C7orf72 - IKZF1	100130988	10320		      105.61	       39.92	rs1456896-T	rs1456896	0	1456896	Intergenic	1	0.688	7E-15	14.15490195998574		   1.09	[1.055-1.123] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7q22.1	7	99161494	SMURF1	SMURF1 - KPNA7	57154	402569		       17.37	       12.08	rs9297145-C	rs9297145	0	9297145	Intergenic	1	0.265	8E-12	11.09691001300806		   1.08	[1.047-1.117] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7q22.1	7	100717894	EPO	POP7 - EPO	10248	2056		       10.39	        2.91	rs1734907-A	rs1734907	0	1734907	Intergenic	1	0.149	2E-13	12.69897000433602		   1.11	[1.071-1.158] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	7q31.2	7	117252792	Intergenic	ST7-OT3 - MTND4P6	93655	100873192		       42.86	       11.10	rs38904-T	rs38904	0	38904	Intergenic	1	0.532	1E-8	8		   1.05	[1.025-1.085] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	8q24.13	8	125522429	TRIB1	TRIB1 - LINC00861	10221	100130231		       84.02	      400.09	rs921720-G	rs921720	0	921720	Intergenic	1	0.609	8E-20	19.09691001300806		   1.08	[1.049-1.113] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	8q24.21	8	129611859	Intergenic	MIR3686 - GSDMC	100500839	56169		      127.72	      136.34	rs1991866-G	rs1991866	0	1991866	Intergenic	1	0.422	2E-9	8.698970004336019		   1.05	[1.024-1.084] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9p24.1	9	4981602	JAK2	HNRNPA1P41 - JAK2	100128701	3717		       35.64	        3.64	rs10758669-C	rs10758669	0	10758669	Intergenic	1	0.349	8E-45	44.09691001300806		   1.17	[1.139-1.209] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9q22.31	9	91166134	NFIL3	SYK - AUH	6850	549		      267.57	       47.68	rs4743820-T	rs4743820	0	4743820	Intergenic	1	0.702	4E-9	8.397940008672036		   1.06	[1.023-1.089] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9q32	9	114790969	TNFSF8,TNFSF15,TNC	TNFSF15			9966			rs4246905-C	rs4246905	0	4246905	intron	0	0.709	3E-32	31.52287874528033		   1.14	[1.106-1.178] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	9q34.3	9	136371953	CARD9,PMPCA,SDCCAG3,INPP5E	CARD9			64170			rs10781499-A	rs10781499	0	10781499	cds-synon	0	0.412	4E-56	55.39794000867203		   1.19	[1.154-1.222] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10p15.1	10	6039267	IL2RA,IL15RA	IL2RA			3559			rs12722515-C	rs12722515	0	12722515	intron	0	0.849	4E-10	9.397940008672037		   1.10	[1.06-1.147] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10p11.23	10	30439172	MAP3K8	MAP3K8			1326			rs1042058-C	rs1042058	0	1042058	cds-synon	0	0.592	6E-11	10.22184874961635		   1.08	[1.044-1.106] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10p11.21	10	35006503	CREM	PRDX2P2 - CUL2	646218	8453		       40.25	        2.05	rs11010067-G	rs11010067	0	11010067	Intergenic	1	0.346	2E-25	24.69897000433602		   1.12	[1.082-1.148] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q21.1	10	58238165	CISD1,IPMK	IPMK			253430			rs2790216-G	rs2790216	0	2790216	intron	0	0.778	8E-9	8.096910013008056		   1.07	[1.029-1.104] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q21.2	10	62685804	Intergenic	ZNF365 - ALDH7A1P4	22891	544		       13.79	       55.19	rs10761659-G	rs10761659	0	10761659	Intergenic	1	0.543	6E-46	45.22184874961636		   1.17	[1.134-1.20] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q22.2	10	73913343	Intergenic	PLAU;C10orf55			5328;414236			rs2227564-C	rs2227564	0	2227564	missense;intron	0	0.77	7E-10	9.154901959985741		   1.08	[1.048-1.118] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q22.3	10	79272775	Intergenic	ZMIZ1			57178			rs1250546-A	rs1250546	0	1250546	intron	0	0.604	3E-18	17.52287874528034		   1.10	[1.065-1.128] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q23.1	10	80494291	TSPAN14,C10orf58	TSPAN14			81619			rs6586030-G	rs6586030	0	6586030	intron	0	0.847	9E-16	15.04575749056067		   1.12	[1.076-1.156] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q23.33	10	92677094	Intergenic	EIF2S2P3 - HHEX	283014	3087		        7.25	       12.83	rs7911264-C	rs7911264	0	7911264	Intergenic	1	0.519	3E-8	7.522878745280337		   1.07	[1.035-1.097] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q24.2	10	99524480	NKX2-3	GOT1 - NKX2-3	2805	159296		       93.71	        8.45	rs4409764-T	rs4409764	0	4409764	Intergenic	1	0.491	1E-54	53.99999999999999		   1.18	[1.149-1.217] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11p15.5	11	1852842	TNNI2,LSP1	LSP1			4046			rs907611-A	rs907611	0	907611	nearGene-5	0	0.315	3E-10	9.522878745280336		   1.07	[1.035-1.101] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q12.1	11	58571651	CNTF,LPXN	LPXN			9404			rs10896794-T	rs10896794	0	10896794	intron	0	0.762	7E-10	9.154901959985741		   1.08	[1.045-1.116] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q12.2	11	61008737	CD6,CD5,PTGDR2	CD6			923			rs11230563-C	rs11230563	0	11230563	missense	0	0.654	9E-13	12.04575749056067		   1.09	[1.053-1.118] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q12.2	11	61796827	C11orf9,FADS1,FADS2	FEN1			2237			rs4246215-T	rs4246215	0	4246215	UTR-3	0	0.338	2E-15	14.69897000433602		   1.08	[1.046-1.112] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q13.1	11	64382898	CCDC88B,RPS6KA4,TRPT1,FLRT1	MIR1237 - SLC22A11	100302280	55867		       14.20	      172.73	rs559928-C	rs559928	0	559928	Intergenic	1	0.821	4E-11	10.39794000867204		   1.10	[1.061-1.142] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q13.1	11	65889093	RELA,FOSL1,CTSW,SNX32	FIBP;CCDC85B			9158;11007			rs2231884-T	rs2231884	0	2231884	nearGene-5;nearGene-5	0	0.157	3E-10	9.522878745280336		   1.08	[1.044-1.122] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q13.5	11	76588150	Intergenic	C11orf30 - LRRC32	56946	2615		       35.25	       69.37	rs2155219-T	rs2155219	0	2155219	Intergenic	1	0.509	4E-36	35.39794000867203		   1.15	[1.119-1.185] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q14.2	11	87414396	Intergenic	LOC101929137			101929137			rs6592362-A	rs6592362	0	6592362	intron	0	0.248	2E-8	7.698970004336018		   1.08	[1.049-1.117] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q23.3	11	118883644	CXCR5	CXCR5			643			rs630923-C	rs630923	0	630923	nearGene-5	0	0.846	7E-9	8.154901959985743		   1.07	[1.039-1.11] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12p13.2	12	12504579	LOH12CR1	DUSP16			80824			rs11612508-G	rs11612508	0	11612508	intron	0	0.267	1E-8	8		   1.06	[1.025-1.091] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12q12	12	40398498	LRRK2,MUC19	MUC19			283463			rs11564258-A	rs11564258	0	11564258	intron	0	0.025	6E-29	28.22184874961635		   1.33	[1.217-1.461] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12q13.11	12	47814585	VDR	HDAC7			51564			rs11168249-C	rs11168249	0	11168249	intron	0	0.467	8E-9	8.096910013008056		   1.05	[1.024-1.084] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12q15	12	68106295	IFNG,IL26,IL22	HNRNPA1P70 - IFNG	341333	3458		       69.52	       48.48	rs7134599-A	rs7134599	0	7134599	Intergenic	1	0.378	9E-32	31.04575749056067		   1.10	[1.064-1.128] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	13q12.13	13	26957130	Intergenic	FGFR1OP2P1 - RPS21P8	100873883	100873798		       51.35	       20.42	rs17085007-C	rs17085007	0	17085007	Intergenic	1	0.183	3E-19	18.52287874528033		   1.11	[1.065-1.147] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	13q14.11	13	40439840	Intergenic	LINC00598			646982			rs941823-C	rs941823	0	941823	intron	0	0.758	2E-14	13.69897000433602		   1.07	[1.036-1.107] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	13q32.3	13	99304368	GPR183,GPR18	GPR183;UBAC2			1880;337867			rs9557195-T	rs9557195	0	9557195	intron;intron	0	0.772	2E-14	13.69897000433602		   1.11	[1.075-1.151] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	14q24.1	14	68807188	ZFP36L1	ZFP36L1 - MAGOH3P	677	90352		       10.95	       54.54	rs194749-C	rs194749	0	194749	Intergenic	1	0.226	3E-10	9.522878745280336		   1.08	[1.039-1.111] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	14q24.3	14	75234518	FOS,MLH3	TMED10 - FOS	10972	2353		       57.87	       44.26	rs4899554-C	rs4899554	0	4899554	Intergenic	1	0.819	3E-8	7.522878745280337		   1.08	[1.042-1.125] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	14q31.3	14	88006251	GPR65,GALC	GPR65			8477			rs8005161-T	rs8005161	0	8005161	intron	0	0.089	2E-14	13.69897000433602		   1.15	[1.097-1.211] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	15q22.33	15	67150258	SMAD3	SMAD3			4088			rs17293632-T	rs17293632	0	17293632	intron	0	0.235	6E-16	15.22184874961635		   1.07	[1.032-1.102] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	15q26.1	15	90629669	CRTC3	CRTC3			64784			rs7495132-C	rs7495132	0	7495132	intron	0	0.891	9E-11	10.04575749056067		   1.13	[1.082-1.189] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16p13.13	16	11279463	SOCS1,LITAF,RMI2	PRM2 - PRM1	5620	5619		        2.98	        1.37	rs529866-C	rs529866	0	529866	Intergenic	1	0.803	2E-16	15.69897000433602		   1.12	[1.085-1.166] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16p12.2	16	23853269	PRKCB	PRKCB			5579			rs7404095-C	rs7404095	0	7404095	intron	0	0.572	1E-9	8.999999999999998		   1.06	[1.03-1.091] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16p11.2	16	28506388	RABEP2,IL27,EIF3C,SULT1A1,SULT1A2,NUPR1	IL27			246778			rs26528-C	rs26528	0	26528	intron	0	0.451	1E-21	21		   1.10	[1.067-1.13] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16q24.1	16	85977731	IRF8	MIR6774 - LINC01082	102466732	100506542		       59.32	      218.45	rs10521318-C	rs10521318	0	10521318	Intergenic	1	0.915	1E-9	8.999999999999998		   1.16	[1.094-1.219] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q12	17	34266955	CCL13,CCL2,CCL11	CCL2 - CCL7	6347	6354		        9.75	        3.26	rs3091316-G	rs3091316	0	3091316	Intergenic	1	0.722	1E-26	26		   1.12	[1.087-1.158] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q12	17	39756124	IKZF3,ZPBP2,GSDMB,ORMDL3,GSDMA	GRB7 - IKZF3	2886	22806		        8.84	        1.59	rs12946510-T	rs12946510	0	12946510	Intergenic	1	0.465	4E-38	37.39794000867204		   1.16	[1.124-1.19] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q21.2	17	42375526	STAT3,STAT5B,STAT5A	STAT3			6774			rs12942547-A	rs12942547	0	12942547	intron	0	0.58	6E-22	21.22184874961636		   1.10	[1.072-1.136] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q23.1	17	59886176	TUBD1,RPS6KB1	TUBD1			51174			rs1292053-G	rs1292053	0	1292053	missense	0	0.446	9E-13	12.04575749056067		   1.08	[1.045-1.106] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	18p11.21	18	12809341	Intergenic	PTPN2			5771			rs1893217-G	rs1893217	0	1893217	intron	0	0.157	3E-26	25.52287874528034		   1.17	[1.127-1.216] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	18q21.1	18	48868651	SMAD7	MIR4743 - SMAD7	100616366	4092		      197.98	       51.20	rs7240004-A	rs7240004	0	7240004	Intergenic	1	0.616	1E-9	8.999999999999998		   1.06	[1.026-1.088] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	18q22.2	18	69863203	CD226	CD226			10666			rs727088-G	rs727088	0	727088	UTR-3	0	0.484	5E-9	8.301029995663981		   1.08	[1.046-1.108] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	19p13.2	19	10402235	TYK2,PPAN-P2RY11,ICAM1	CDC37			11140			rs11879191-G	rs11879191	0	11879191	intron	0	0.797	2E-18	17.69897000433602		   1.14	[1.096-1.177] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	19q13.11	19	33240645	CEBPG	SLC7A10 - CEBPA	56301	1050		       14.80	       59.29	rs17694108-A	rs17694108	0	17694108	Intergenic	1	0.282	6E-15	14.22184874961635		   1.10	[1.065-1.135] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	19q13.42	19	54871595	NLRP7,NLRP2,KIR2DL1,LILRB4	KIR3DL2 - FCAR	3812	2204		        4.38	        2.50	rs11672983-A	rs11672983	0	11672983	Intergenic	1	0.392	7E-11	10.15490195998574		   1.09	[1.055-1.119] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q11.21	20	32137845	HCK	TM9SF4			9777			rs6142618-G	rs6142618	0	6142618	intron	0	0.564	6E-10	9.221848749616356		   1.07	[1.041-1.103] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q11.21	20	32788476	DNMT3B	DNMT3B			1789			rs4911259-G	rs4911259	0	4911259	intron	0	0.383	1E-9	8.999999999999998		   1.08	[1.044-1.106] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.12	20	46113425	CD40,MMP9,PLTP	RPL13P2 - CD40	128500	958		       13.23	        4.84	rs1569723-C	rs1569723	0	1569723	Intergenic	1	0.259	1E-13	13		   1.09	[1.056-1.126] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.13	20	50338887	CEBPB	CEBPB - COX6CP2	1051	170504		      146.20	      140.83	rs913678-T	rs913678	0	913678	Intergenic	1	0.662	5E-8	7.30102999566398		   1.06	[1.024-1.088] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.32	20	59249254	ZNF831,CTSZ	ZNF831			128611			rs259964-A	rs259964	0	259964	intron	0	0.464	1E-12	12		   1.09	[1.054-1.116] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.33	20	63717555	TNFRSF6B,LIME1,SLC2A4RG,ZGPAT	ZGPAT			84619			rs6062504-G	rs6062504	0	6062504	intron	0	0.684	1E-23	23		   1.10	[1.071-1.139] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	21q21.1	21	15445619	Intergenic	NRIP1 - CYCSP42	8204	343727		      380.69	       44.91	rs2823286-G	rs2823286	0	2823286	Intergenic	1	0.708	9E-30	29.04575749056067		   1.16	[1.121-1.194] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	21q22.2	21	39093608	Intergenic	RPSAP64 - RPL23AP12	100873797	391282		      198.41	       33.95	rs2836878-G	rs2836878	0	2836878	Intergenic	1	0.733	5E-48	47.30102999566397		   1.18	[1.142-1.219] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	21q22.3	21	44195858	ICOSLG	C21orf33			8209			rs7282490-G	rs7282490	0	7282490	intron	0	0.391	2E-26	25.69897000433602		   1.11	[1.072-1.138] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	22q11.21	22	21568615	MAPK1,YDJC,UBE2L3,RIMBP3,CCDC116	UBE2L3			7332			rs2266959-T	rs2266959	0	2266959	intron	0	0.186	1E-16	16		   1.11	[1.066-1.145] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	22q12.2	22	30090837	LIF,OSM,MTMR3	HORMAD2			150280			rs2412970-G	rs2412970	0	2412970	intron	0	0.457	3E-14	13.52287874528034		   1.08	[1.049-1.111] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	22q13.1	22	39263768	ATF4,TAB1,APOBEC3G	PDGFB - RPL3	5155	6122		       18.82	       49.11	rs2413583-C	rs2413583	0	2413583	Intergenic	1	0.833	4E-33	32.39794000867203		   1.21	[1.163-1.257] 	Affymetrix & Illumina [1.23 million](imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1p36.32	1	2569899	TNFRSF14,MMEL1,PLCH2	TNFRSF14 - FAM213B	8764	127281		        6.07	       16.56	rs10797432-C	rs10797432	0	10797432	Intergenic	1	0.522	3E-12	11.52287874528034		   1.08	[1.041-1.116] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1p36.13	1	19845367	Intergenic	RNF186 - OTUD3	54546	23252		       30.09	       36.50	rs6426833-A	rs6426833	0	6426833	Intergenic	1	0.542	2E-68	67.69897000433602		   1.27	[1.221-1.31] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1q32.1	1	200132792	Intergenic	NR5A2			2494			rs2816958-G	rs2816958	0	2816958	intron	0	0.887	2E-17	16.69897000433602		   1.23	[1.161-1.302] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2q33.1	2	198016944	RFTN2,PLCL1	PLCL1			5334			rs1016883-G	rs1016883	0	1016883	intron	0	0.817	3E-8	7.522878745280337		   1.10	[1.051-1.15] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2q33.1	2	198658398	Intergenic	PLCL1 - SATB2	5334	23314		      508.51	      611.10	rs17229285-C	rs17229285	0	17229285	Intergenic	1	0.496	2E-13	12.69897000433602		   1.12	[1.079-1.157] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	3p21.1	3	53028645	PRKCD,ITIH4	SFMBT1;LOC102723651			51460;102723651			rs9847710-C	rs9847710	0	9847710	intron;intron	0	0.416	1E-8	8		   1.06	[1.027-1.102] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	4q24	4	102589957	NFKB1,MANBA	NFKB1			4790			rs3774959-A	rs3774959	0	3774959	intron	0	0.358	4E-12	11.39794000867204		   1.12	[1.077-1.159] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	5p15.33	5	593968	SLC9A3	MIR4456 - CEP72	100616381	55722		       58.09	       18.32	rs11739663-T	rs11739663	0	11739663	Intergenic	1	0.76	2E-8	7.698970004336018		   1.07	[1.027-1.117] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	5q31.1	5	135107916	Intergenic	C5orf66			100996485			rs254560-A	rs254560	0	254560	intron	0	0.397	3E-9	8.522878745280337		   1.06	[1.019-1.093] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	6p21.32	6	32644620	HLA-DQB1,HLA-DRB1,HLA-DQA1,HLA-DRA	HLA-DQA1			3117			rs6927022-A	rs6927022	0	6927022	intron	0	0.535	5E-133	132.301029995664		   1.44	[1.387-1.503] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7p22.3	7	2750246	CARD11,GNA12,TTYH3	GNA12			2768			rs798502-A	rs798502	0	798502	intron	0	0.709	6E-17	16.22184874961636		   1.13	[1.084-1.171] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7p15.2	7	27192143	Intergenic	HOXA11-AS - HOXA13	221883	3209		        2.85	        4.74	rs4722672-C	rs4722672	0	4722672	Intergenic	1	0.183	2E-8	7.698970004336018		   1.09	[1.043-1.14] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7q31.1	7	107839870	DLD	PIGCP2 - DLD	100128307	1738		       30.28	       51.27	rs4380874-T	rs4380874	0	4380874	Intergenic	1	0.405	2E-26	25.69897000433602		   1.14	[1.097-1.177] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	7q32.1	7	128933913	IRF5,TNPO3,TSPAN33	KCP - IRF5	375616	3663		       23.19	        4.03	rs4728142-A	rs4728142	0	4728142	Intergenic	1	0.444	4E-14	13.39794000867204		   1.10	[1.066-1.143] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	11q21	11	96290263	JRKL,MAML2	MAML2			84441			rs483905-A	rs483905	0	483905	intron	0	0.292	1E-8	8		   1.06	[1.017-1.096] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	11q23.2	11	114516108	NXPE1,NXPE4	REXO2 - NXPE1	25996	120400		       65.83	        5.61	rs561722-C	rs561722	0	561722	Intergenic	1	0.663	5E-17	16.30102999566398		   1.12	[1.079-1.163] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	15q15.1	15	41271752	ITPKA,NDUFAF1,NUSAP1	CHP1			11261			rs28374715-A	rs28374715	0	28374715	intron	0	0.738	2E-8	7.698970004336018		   1.08	[1.04-1.126] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	16p11.2	16	30471173	ITGAL	ITGAL			3683			rs11150589-T	rs11150589	0	11150589	nearGene-5	0	0.463	6E-10	9.221848749616356		   1.09	[1.052-1.128] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	16q22.1	16	68557327	ZFP90	ZFP90			146198			rs1728785-C	rs1728785	0	1728785	intron	0	0.767	4E-8	7.397940008672037		   1.08	[1.031-1.121] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	17q24.3	17	72645559	Intergenic	SLC39A11			201266			rs7210086-A	rs7210086	0	7210086	intron	0	0.797	2E-9	8.698970004336019		   1.11	[1.062-1.163] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	19q13.32	19	46620526	CALM3	PTGIR			5739			rs1126510-G	rs1126510	0	1126510	intron	0	0.363	2E-9	8.698970004336019		   1.08	[1.037-1.113] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	20q11.22	20	35211477	PROCR,UQCC,CEP250	PROCR			10544			rs6088765-G	rs6088765	0	6088765	intron	0	0.437	2E-8	7.698970004336018		   1.08	[1.041-1.117] 	Affymetrix & Illumina [1.23 million] (imputed)	N
02/12/2013	23128233	Jostins L	11/01/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/23128233	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	20q13.12	20	44436388	ADA,HNF4A	MIR3646 - C20orf62	100500813	140834		       28.19	       25.38	rs6017342-C	rs6017342	0	6017342	Intergenic	1	0.53	1E-43	43		   1.23	[1.185-1.273] 	Affymetrix & Illumina [1.23 million] (imputed)	N
01/11/2013	23118974	Candille SI	10/31/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23118974	Genome-wide association studies of quantitatively measured skin, hair, and eye pigmentation in four European populations.	Eye color	175 European ancestry individuals	293 European ancestry individuals	15q13.1	15	28285036	HERC2, OCA2	HERC2			8924			rs1667394-C	rs1667394	0	1667394	intron	0	0.28	2E-20	19.69897000433602	(Eye color)	    .35	[0.28-0.42] unit increase	Illumina [313,763]	N
01/11/2013	23118974	Candille SI	10/31/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23118974	Genome-wide association studies of quantitatively measured skin, hair, and eye pigmentation in four European populations.	Eye color	175 European ancestry individuals	293 European ancestry individuals	5q21.3	5	108064804	FBXL17	FBXL17			64839			rs288139-A	rs288139	0	288139	intron	0	0.21	1E-6	5.999999999999999	(Eye color)	    .21	[0.12-0.29] unit increase	Illumina [313,763]	N
01/11/2013	23118974	Candille SI	10/31/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23118974	Genome-wide association studies of quantitatively measured skin, hair, and eye pigmentation in four European populations.	Eye color	175 European ancestry individuals	293 European ancestry individuals	8q24.22	8	131341488	ADCY8/EFR3A	ADCY8 - EFR3A	114	23167		      300.72	      562.62	rs4596632-C	rs4596632	0	4596632	Intergenic	1	0.33	3E-6	5.522878745280337	(Eye color)	    .17	[0.098-0.236] unit increase	Illumina [313,763]	N
01/11/2013	23118916	Yang M	10/31/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23118916	Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population.	IgM levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	17	7559238	TNFSF13	TNFSF13;TNFSF12-TNFSF13			8741;407977			rs11552708-G	rs11552708	0	11552708	missense;intron	0	0.7573	4E-9	8.397940008672036		NR	NR	Illumina [1,940,243] (imputed)	N
01/11/2013	23118916	Yang M	10/31/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23118916	Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population.	IgM levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	17	7565912	SENP3	SENP3;SENP3-EIF4A1			26168;100533955			rs11078697-C	rs11078697	0	11078697	intron;intron	0	0.83	4E-7	6.397940008672037		NR	NR	Illumina [1,940,243] (imputed)	N
01/11/2013	23118916	Yang M	10/31/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23118916	Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population.	IgM levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	17	7608756	FXR2	FXR2			9513			rs11653545-G	rs11653545	0	11653545	intron	0	0.83	2E-7	6.698970004336019		NR	NR	Illumina [1,940,243] (imputed)	N
01/16/2013	23108985	Guo YF	10/30/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23108985	Suggestion of GLYAT gene underlying variation of bone size and body lean mass as revealed by a bivariate genome-wide association study.	Body mass (lean)	1,627 Han Chinese individuals	2,286 European ancestry individuals	11q12.1	11	58705326	GLYAT	CNTF - GLYAT	1270	10249		       79.59	        3.43	rs2507838-A	rs2507838	0	2507838	Intergenic	1	0.03	2E-8	7.698970004336018	(ALM-ABS)	NR	NR	Affymetrix [689,368]	N
01/15/2013	23108145	Wang LE	10/29/2012	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23108145	Genome-wide association study reveals novel genetic determinants of DNA repair capacity in lung cancer.	Lung Cancer (DNA repair capacity)	914 European ancestry non-small cell lung cancer cases, 860 European ancestry controls	679 European ancestry ancestry non-small cell lung cancer cases, 695 European ancestry controls	19q13.32	19	45351661	ERCC2, XPD	ERCC2;KLC3			2068;147700			rs13181-C	rs13181	0	13181	missense;nearGene-3	0	0.3613	9E-7	6.045757490560675		NR	NR	Illumina [303,669]	N
01/15/2013	23108145	Wang LE	10/29/2012	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/23108145	Genome-wide association study reveals novel genetic determinants of DNA repair capacity in lung cancer.	Lung Cancer (DNA repair capacity)	914 European ancestry non-small cell lung cancer cases, 860 European ancestry controls	679 European ancestry ancestry non-small cell lung cancer cases, 695 European ancestry controls	6q24.2	6	143622177	PHACTR2	PHACTR2			9749			rs9390123-A	rs9390123	0	9390123	intron	0	0.3957	7E-6	5.154901959985742		NR	NR	Illumina [303,669]	N
01/11/2013	23104006	Nyholt DR	10/28/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23104006	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	1p36.12	1	22164231	WNT4	WNT4 - MIR4418	54361	100616433		       21.21	      102.01	rs7521902-A	rs7521902	0	7521902	Intergenic	1	0.238	3E-11	10.52287874528034		   1.19	[1.13-1.25] 	Illumina [407,632]	N
01/11/2013	23104006	Nyholt DR	10/28/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23104006	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	2p25.1	2	11587381	GREB1	GREB1			9687			rs13394619-G	rs13394619	0	13394619	splice-3	0	0.521	6E-9	8.221848749616356		   1.15	[1.09-1.20] 	Illumina [407,632]	N
01/11/2013	23104006	Nyholt DR	10/28/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23104006	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	2p14	2	67637543	NR	ETAA1 - C1D	54465	10438		      227.14	      404.66	rs4141819-C	rs4141819	0	4141819	Intergenic	1	0.309	9E-8	7.045757490560674		   1.15	[1.09-1.21] 	Illumina [407,632]	N
01/11/2013	23104006	Nyholt DR	10/28/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23104006	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	6p22.3	6	19785357	NR	UQCRFS1P3 - ID4	100130994	3400		      146.16	       51.99	rs7739264-T	rs7739264	0	7739264	Intergenic	1	0.515	4E-10	9.397940008672037		   1.17	[1.11-1.23] 	Illumina [407,632]	N
01/11/2013	23104006	Nyholt DR	10/28/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23104006	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	7p15.2	7	25862019	Intergenic	UBA52P1 - MIR148A	7312	406940		      171.95	       87.90	rs12700667-A	rs12700667	0	12700667	Intergenic	1	0.744	4E-9	8.397940008672036		   1.18	[1.11-1.25] 	Illumina [407,632]	N
01/11/2013	23104006	Nyholt DR	10/28/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23104006	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	9p21.3	9	22169701	CDKN2B-ASI, CDKN2B, CDKN2A, ARF 	UBA52P6 - DMRTA1	100130239	63951		      157.16	      277.14	rs1537377-C	rs1537377	0	1537377	Intergenic	1	0.401	2E-9	8.698970004336019		   1.15	[1.10-1.21] 	Illumina [407,632]	N
01/11/2013	23104006	Nyholt DR	10/28/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23104006	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	12q22	12	95318100	VEZT	MIR3685 - RPL29P26	100500802	643531		        8.12	      149.16	rs10859871-C	rs10859871	0	10859871	Intergenic	1	0.295	5E-13	12.30102999566398		   1.20	[1.14-1.26] 	Illumina [407,632]	N
01/18/2013	23103227	Jin G	10/25/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23103227	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	6p21.1	6	40568389	LRFN2	LRFN2			57497			rs2494938-A	rs2494938	0	2494938	intron	0	0.23	2E-6	5.698970004336018	(Lung Cancer)	   1.15	[1.08-1.22] 	Affymetrix [NR]	N
01/18/2013	23103227	Jin G	10/25/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23103227	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	6p21.1	6	40568389	LRFN2	LRFN2			57497			rs2494938-A	rs2494938	0	2494938	intron	0	0.23	5E-9	8.301029995663981	(NCGC)	   1.18	[1.12-1.25] 	Affymetrix [NR]	N
01/18/2013	23103227	Jin G	10/25/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23103227	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	6p21.1	6	40568389	LRFN2	LRFN2			57497			rs2494938-A	rs2494938	0	2494938	intron	0	0.23	1E-12	12	(All Cancers)	   1.15	[1.10-1.19] 	Affymetrix [NR]	N
01/18/2013	23103227	Jin G	10/25/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23103227	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	7	21544470	SP4, DNAH11	DNAH11			8701			rs2285947-A	rs2285947	0	2285947	intron	0	0.26	2E-8	7.698970004336018	(Lung Cancer)	   1.17	[1.11-1.24] 	Affymetrix [NR]	N
01/18/2013	23103227	Jin G	10/25/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23103227	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	7	21544470	SP4, DNAH11	DNAH11			8701			rs2285947-A	rs2285947	0	2285947	intron	0	0.27	1E-6	5.999999999999999	(NCGC)	   1.14	[1.08-1.21] 	Affymetrix [NR]	N
01/18/2013	23103227	Jin G	10/25/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23103227	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	7	21544470	SP4, DNAH11	DNAH11			8701			rs2285947-A	rs2285947	0	2285947	intron	0	0.27	1E-16	16	(All Cancers)	   1.17	[1.12-1.21] 	Affymetrix [NR]	N
01/18/2013	23103227	Jin G	10/25/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23103227	Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese.	Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma)	2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls	2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls	7p15.3	7	21544470	SP4, DNAH11	DNAH11			8701			rs2285947-A	rs2285947	0	2285947	intron	0	0.27	3E-6	5.522878745280337	(ESCC)	   1.14	[1.08-1.21] 	Affymetrix [NR]	N
01/16/2013	23133572	Rye MS	10/25/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23133572	Genome-wide association study to identify the genetic determinants of otitis media susceptibility in childhood.	Otitis media (chronic/recurrent)	416 cases and 1,075 controls of European and unknown ancestry	~2,083 individuals from 645 families of European and unknown ancestry	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,509,905] (imputed)	N
01/09/2013	23100282	Hopewell JC	10/24/2012	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/23100282	Impact of common genetic variation on response to simvastatin therapy among 18 705 participants in the Heart Protection Study.	Response to statin therapy	3,895 European ancestry individuals	14,810 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [546,210]	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	6q14.2	6	83516876	PRSS35, SNAP91	PRSS35			167681			rs1171113-C	rs1171113	0	1171113	intron	0	NR	1E-7	7		   1.23	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	3p22.2	3	36814539	TRANK1, LBA	HSPD1P6 - TRANK1	645548	9881		       45.65	       12.28	rs9834970-?	rs9834970	0	9834970	Intergenic	1	NR	1E-7	7		   1.22	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	14q24.2	14	73300506	NUMB	NUMB			8650			rs2333194-?	rs2333194	0	2333194	intron	0	NR	7E-7	6.154901959985743		   1.20	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	3p26.1	3	5663365	Intergenic	MRPS35P1 - MRPS36P1	339910	347705		      216.26	     1109.67	rs11710433-?	rs11710433	0	11710433	Intergenic	1	NR	1E-6	5.999999999999999		   1.23	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	3p25.1	3	13695501	FBLN2	LINC00620			285375			rs4450798-T	rs4450798	0	4450798	intron	0	NR	2E-6	5.698970004336018		   1.26	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	8q11.23	8	53642640	ATP6V1H	MAPK6PS1 - ATP6V1H	317686	51606		      101.07	       72.90	rs11773966-A	rs11773966	0	11773966	Intergenic	1	NR	2E-6	5.698970004336018		   2.17	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	3p21.1	3	52684264	PBRM1, GNL3	GNL3;PBRM1			26354;55193			rs10865974-?	rs10865974	0	10865974	nearGene-5;intron	0	NR	2E-6	5.698970004336018		   1.19	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	17p13.2	17	6190631	WSC domain containing 1	WSCD1 - BTF3P14	23302	100132641		       66.20	      131.78	rs3744728-C	rs3744728	0	3744728	Intergenic	1	NR	3E-6	5.522878745280337		   1.51	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	1p35.2	1	30052867	Intergenic	PTPRU - MATN1	10076	4146		      726.05	      658.41	rs2860031-?	rs2860031	0	2860031	Intergenic	1	NR	3E-6	5.522878745280337		   1.22	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	1p36.11	1	24105466	MYOM3	MYOM3			127294			rs3934861-?	rs3934861	0	3934861	intron	0	NR	4E-6	5.397940008672037		   1.25	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	7q33	7	138174020	AKR1D1	MIR4468 - RPS17P12	100616226	442726		       50.20	      124.04	rs10255295-G	rs10255295	0	10255295	Intergenic	1	NR	5E-6	5.301029995663981		   1.31	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	10p11.22	10	32020077	KIF5B	KIF5B			3799			rs1775715-G	rs1775715	0	1775715	intron	0	NR	5E-6	5.301029995663981		   1.18	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	5p15.1	5	17215335	BASP1	BASP1;LOC285696			10409;285696			rs2962370-G	rs2962370	0	2962370	nearGene-5;intron	0	NR	5E-6	5.301029995663981		   1.19	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	6p21.2	6	37206969	TMEM217	TRNAI25			100189401			rs1680005-A	rs1680005	0	1680005		0	NR	7E-6	5.154901959985742		   1.18	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	2q11.2	2	98467429	INPP4A	INPP4A			3631			rs12617721-C	rs12617721	0	12617721	intron	0	NR	7E-6	5.154901959985742		   1.20	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/09/2013	23092984	Goes FS	10/23/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23092984	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder (mood-incongruent)	1,236 European ancestry cases, 960 Other ancestry cases, 8,148 European and other ancestry controls	NA	22q11.23	22	25479298	CRYBB2P1	MIR6817 - ADRBK2	102466198	157		       23.59	       85.60	rs1930961-?	rs1930961	0	1930961	Intergenic	1	NR	9E-6	5.045757490560675		   1.39	[NR] 	Affymetrix & Illumina [NR] (~2.5 Million)	N
01/10/2013	23065704	Amin Al Olama A	10/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23065704	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	19q13.2	19	41479679	ATP5SL, CEACAM21	PCAT19			100505495			rs11672691-G	rs11672691	0	11672691	intron	0	NR	1E-8	8	(Aggressive)	   1.11	[1.02-1.20] 	Illumina [~2.6 million] (imputed)	N
01/10/2013	23065704	Amin Al Olama A	10/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23065704	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	19q13.2	19	41479679	ATP5SL, CEACAM21	PCAT19			100505495			rs11672691 -G	rs11672691	0	11672691	intron	0	NR	2E-12	11.69897000433602	(All)	   1.08	[1.04-1.12] 	Illumina [~2.6 million] (imputed)	N
01/10/2013	23065704	Amin Al Olama A	10/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23065704	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	22q13.1	22	40040969	TNRC6B	FAM83F - TNRC6B	113828	23112		       10.93	        3.85	rs11704416-C	rs11704416	0	11704416	Intergenic	1	NR	4E-6	5.397940008672037	(Aggressive)	   1.05	[0.96-1.15] 	Illumina [~2.6 million] (imputed)	N
01/10/2013	23065704	Amin Al Olama A	10/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23065704	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	22q13.1	22	40040969	TNRC6B	FAM83F - TNRC6B	113828	23112		       10.93	        3.85	rs11704416-C	rs11704416	0	11704416	Intergenic	1	NR	4E-7	6.397940008672037	(All)	   1.06	[1.02-1.10] 	Illumina [~2.6 million] (imputed)	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	1p36.32	1	4608610	AJAP1	LINC01134 - AJAP1	100133612	55966		      693.16	       46.44	rs3896439-?	rs3896439	0	3896439	Intergenic	1	NR	2E-8	7.698970004336018	(DMFS5max, DMFS5)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	1p36.22	1	9372331	SPSB1	SPSB1 - SLC25A33	80176	84275		        2.80	      167.14	rs9308447-?	rs9308447	0	9308447	Intergenic	1	NR	5E-7	6.30102999566398	(DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	1q32.1	1	204814890	NFASC	RNA5SP75 - NFASC	100873309	23114		      107.46	       13.76	rs7552806-?	rs7552806	0	7552806	Intergenic	1	NR	3E-6	5.522878745280337	(DMFS5, DMFS5max)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	2p24.3	2	12828774	TRIB2	MIR3125 - NACAP4	100422986	100421926		       91.33	      754.91	rs10180496-?	rs10180496	0	10180496	Intergenic	1	NR	1E-7	7	(DMFS5, DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	4p15.32	4	16016701	PROM1	PROM1			8842			rs2531154-?	rs2531154	0	2531154	intron	0	NR	9E-7	6.045757490560675	(DMFS5max)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	6p25.3	6	566741	EXOC2	EXOC2			55770			rs2476842-?	rs2476842	0	2476842	intron	0	NR	3E-6	5.522878745280337	(DMFS3)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	10p14	10	10559897	SFTA1P	CUX2P1 - SFTA1P	100126596	207107		      302.52	      224.54	rs11256676-?	rs11256676	0	11256676	Intergenic	1	NR	5E-6	5.301029995663981	(DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	8p21.3	8	20479062	LZTS1	RNA5SP257 - RNU3P2	100873511	26844		      188.77	      135.79	rs10111661-?	rs10111661	0	10111661	Intergenic	1	NR	2E-6	5.698970004336018	(DMFS5max,DMFS5)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	17q11.1	17	27240054	WSB1	TUFMP1 - RPL34P31	645668	729536		      155.93	       34.05	rs12602978-?	rs12602978	0	12602978	Intergenic	1	NR	7E-7	6.154901959985743	(DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	21q21.2			Intergenic	 - 						rs2829459-?	rs2829459					NR	3E-6		(DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	10p11.23	10	30623101	LYZL2	LYZL2			119180			rs399593-?	rs399593	0	399593	intron	0	NR	9E-9	8.045757490560675	(DMFS2)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	18q21.1	18	49053600	SMAD7	DYM			54808			rs357894-?	rs357894	0	357894	intron	0	NR	4E-6	5.397940008672037	(DMFS5max)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	13q21.32	13	67122013	PCDH9	PCDH9			5101			rs2875517-?	rs2875517	0	2875517	intron	0	NR	3E-6	5.522878745280337	(DMFS3)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	7q21.11	7	77967495	PHTF2	PHTF2 - MAGI2	57157	9863		        9.99	       49.56	rs848452-?	rs848452	0	848452	Intergenic	1	NR	2E-6	5.698970004336018	(DMFS2)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	4q22.1	4	88143429	ABCG2,PKD2, SPP1, MEPE, IBSP, DMP1, DSPP	ABCG2			9429			rs3114018-?	rs3114018	0	3114018	intron	0	NR	7E-8	7.154901959985742	(DMFS5mand,DMFS5)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	7q22.3	7	105633273	ATXN7L1	ATXN7L1			222255			rs10242311-?	rs10242311	0	10242311	intron	0	NR	6E-7	6.221848749616355	(DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	6q22.1	6	116222684	NT5DC1	NT5DC1			221294			rs1204798-?	rs1204798	0	1204798	intron	0	NR	2E-6	5.698970004336018	(DMFS2)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	Xq26.1	23	130065837	BCORL1	ELF4			2000			rs3788848-?	rs3788848	0	3788848	UTR-3	0	NR	3E-6	5.522878745280337	(DMFS5,DMFS5max)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	4q31.22	4	147361190	EDNRA	MIR548G - RPL31P26	100313938	100130537		       16.47	       64.74	rs1429138-?	rs1429138	0	1429138	Intergenic	1	NR	2E-7	6.698970004336019	(DMFS2,DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	1q32.1	1	204814890	NFASC	RNA5SP75 - NFASC	100873309	23114		      107.46	       13.76	rs7552806-?	rs7552806	0	7552806	Intergenic	1	NR	3E-6	5.522878745280337	(DMFS5,DMFS5max)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	18p11.22	18	9288458	TWSG1	ANKRD12 - TWSG1	23253	57045		        2.47	       46.31	rs2864527-?	rs2864527	0	2864527	Intergenic	1	NR	4E-6	5.397940008672037	(DMFS2)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	13q12.11	13	20705895	IFT88	IL17D			53342			rs735539-?	rs735539	0	735539	intron	0	NR	4E-6	5.397940008672037	(DMFS2)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	19p12	19	22431320	ZNF98	ZNF98 - ZNF209P	148198	441843		        8.97	       32.60	rs931608-?	rs931608	0	931608	Intergenic	1	NR	1E-6	5.999999999999999	(DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	10q21.3	10	66405509	CTNNA3	CTNNA3			29119			rs2441755-?	rs2441755	0	2441755	intron	0	NR	4E-6	5.397940008672037	(DMFS5)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	18q23	18	76606653	ZNF516	LOC102723325			102723325			rs13381277-?	rs13381277	0	13381277	intron	0	NR	4E-6	5.397940008672037	(DMFS3)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	1p22.3	1	84760616	LPAR3	SSX2IP - LPAR3	117178	23566		       69.86	       50.99	rs1750491-?	rs1750491	0	1750491	Intergenic	1	NR	2E-6	5.698970004336018	(LPAR3)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	1p21.3	1	98883280	LPPR5	SNX7 - LPPR5	51375	163404		      122.78	        6.97	rs11166135-?	rs11166135	0	11166135	Intergenic	1	NR	1E-6	5.999999999999999	(DMFS3)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	10q24.2	10	99514608	NKX2-3	GOT1 - NKX2-3	2805	159296		       83.84	       18.33	rs7078219-?	rs7078219	0	7078219	Intergenic	1	NR	6E-6	5.221848749616356	(DMFS5mand)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	9q22.33	9	99472041	TGFBR1, NR4A3	NAMA - NR4A3	100996569	8013		       96.78	      349.81	rs649057-?	rs649057	0	649057	Intergenic	1	NR	5E-6	5.301029995663981	(DMFS5)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	13q33.3	13	108850501	MYO16	MYO16			23026			rs17485138-?	rs17485138	0	17485138	intron	0	NR	7E-6	5.154901959985742	(DMFS2)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	3q21.3	3	128933710	ACAD9	LOC100132731			100132731			rs9810890-?	rs9810890	0	9810890	intron	0	NR	6E-6	5.221848749616356	(DMFS2)	NR	NR	Illumina [518,997]	N
01/16/2013	23064961	Shaffer JR	10/11/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/23064961	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NR	4q31.22	4	145983152	ZNF827	ZNF827 - LINC01095	152485	100505545		       44.70	      126.30	rs11100904-?	rs11100904	0	11100904	Intergenic	1	NR	2E-6	5.698970004336018	(DMFS3)	NR	NR	Illumina [518,997]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	8	9133067	PPP1R3B, MYP10, MIR4660, MIR124-1, MSRA	MIR4660 - PPP1R3B	100616350	79660		       84.55	        3.19	rs189798-?	rs189798	0	189798	Intergenic	1	0.658	6E-7	6.221848749616355		   1.92	[NR] 	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		1p21.3	1	99058491	LOC100129620	LOC100129620			100129620			rs10747502-?	rs10747502	0	10747502	intron	0	0.08	1E-9	8.999999999999998		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		1q42.2	1	230787205	CAPN9	CAPN9			10753			rs12038826-?	rs12038826	0	12038826	intron	0	0.071	7E-6	5.154901959985742		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		1q44	1	248874237	Intergenic	TRNAL19 - TRNAE24	100189199	100189409		         .28	         .01	rs12032643-?	rs12032643	0	12032643	Intergenic	1	0.896	1E-9	8.999999999999998		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3p14.2	3	59943125	FHIT	FHIT			2272			rs931317-?	rs931317	0	931317	intron	0	0.786	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3p12.1	3	86206522	Intergenic	PRKRIRP2 - VGLL3	100422711	389136		      191.20	      731.45	rs7428796-?	rs7428796	0	7428796	Intergenic	1	.617	2E-18	17.69897000433602		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q23	3	140528335	CLSTN2	CLSTN2			64084			rs4683505-?	rs4683505	0	4683505	intron	0	0.033	4E-7	6.397940008672037		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q24	3	144183185	Intergenic	C3orf58 - RNA5SP144	205428	100873411		      190.82	        3.72	rs4839680-?	rs4839680	0	4839680	Intergenic	1	0.033	1E-15	15		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q26.32	3	178048676	Intergenic	FGFR3P4 - LINC01014	100420833	100874330		      347.60	      370.53	rs7634528-?	rs7634528	0	7634528	Intergenic	1	0.044	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q27.3	3	186748463	Intergenic	KNG1 - PSMD10P2	3827	280644		        4.05	       12.65	rs1656966-?	rs1656966	0	1656966	Intergenic	1	0.137	4E-21	20.39794000867204		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q27.3	3	187970102	Intergenic	BCL6 - LPP-AS2	604	339929		      224.38	      181.10	rs16862782-?	rs16862782	0	16862782	Intergenic	1	0.815	5E-7	6.30102999566398		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4p16.1	4	10725229	Intergenic	CLNK - RNPS1P1	116449	643446		       40.47	      643.59	rs16872571-?	rs16872571	0	16872571	Intergenic	1	0.519	2E-10	9.698970004336017		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4p15.2	4	24576474	DHX15	DHX15			1665			rs6841898-?	rs6841898	0	6841898	cds-synon	0	0.021	3E-26	25.52287874528034		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4q33	4	169959732	Intergenic	LOC100506085			100506085			rs11723530-?	rs11723530	0	11723530	intron	0	0.489	4E-6	5.397940008672037		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4q35.2	4	188199757	Intergenic	TRIML1 - RPL7AP27	339976	152663		       52.01	      149.56	rs6857559-?	rs6857559	0	6857559	Intergenic	1	0.620	3E-21	20.52287874528034		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		5p15.31	5	7368732	Intergenic	RNA5SP176 - ADCY2	100873438	108		      321.40	       27.50	rs13172324-?	rs13172324	0	13172324	Intergenic	1	0.093	3E-10	9.522878745280336		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		5p13.1	5	39979070	Intergenic	INTS6P1 - LINC00603	285634	102467077		      257.56	       73.22	rs10053502-?	rs10053502	0	10053502	Intergenic	1	0.759	1E-16	16		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		5q33.1	5	151094113	Intergenic	TNIP1 - ANXA6	10318	309		        6.45	        6.59	rs999556-?	rs999556	0	999556	Intergenic	1	0.2722	1E-15	15		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6p24.3	6	7743430	BMP6	BMP6			654			rs9505270-?	rs9505270	0	9505270	intron	0	0.261	4E-7	6.397940008672037		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6q21	6	107696467	Intergenic	SOBP - SCML4	55084	256380		       35.16	        5.69	rs12525668-?	rs12525668	0	12525668	Intergenic	1	0.07	8E-11	10.09691001300805		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6q22.1	6	117284828	Intergenic	VGLL2 - ROS1	245806	6098		       11.26	        3.10	rs13201929-?	rs13201929	0	13201929	Intergenic	1	0.121	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		6q24.3	6	147650438	Intergenic	SAMD5 - SASH1	389432	23328		       80.42	      561.68	rs1302019-?	rs1302019	0	1302019	Intergenic	1	0.022	2E-23	22.69897000433602		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7p14.1	7	37964804	Intergenic	EPDR1 - STARD3NL	54749	83930		       12.86	      213.40	rs1668357-?	rs1668357	0	1668357	Intergenic	1	0.82	4E-8	7.397940008672037		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7q21.3	7	97793614	Intergenic	TAC1 - ASNS	6863	440		       53.14	       58.50	rs1229542-?	rs1229542	0	1229542	Intergenic	1	.864	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7q22.3	7	105117803	SRPK2	SRPK2			6733			rs6968355-?	rs6968355	0	6968355	UTR-3	0	0.174	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		7q36.3	7	157594749	PTPRN2	PTPRN2			5799			rs10274279-?	rs10274279	0	10274279	intron	0	0.123	4E-11	10.39794000867204		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	8	9032588	Intergenic	ERI1			90459			rs1045529-?	rs1045529	0	1045529	UTR-3	0	.528	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	8	9956901	Intergenic	MIR124-1 - MSRA	406907	4482		       53.43	       97.42	rs656319-?	rs656319	0	656319	Intergenic	1	.549	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8p23.1	8	11755189	GATA4	GATA4			2626			rs804280-?	rs804280	0	804280	intron	0	0.406	4E-6	5.397940008672037		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q12.1	8	55686989	Intergenic	SBF1P1 - TMEM68	100133234	137695		      231.67	       51.76	rs4737395-?	rs4737395	0	4737395	Intergenic	1	0.1	5E-9	8.301029995663981		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q12.1	8	60049262	Intergenic	NUDT15P1 - CA8	574532	767		      491.34	      139.60	rs569688-?	rs569688	0	569688	Intergenic	1	0.197	4E-7	6.397940008672037		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q13.1	8	65909795	Intergenic	PDE7A - DNAJC5B	5150	85479		       68.06	      111.76	rs6472235-?	rs6472235	0	6472235	Intergenic	1	0.617	1E-7	7		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q21.13	8	81239512	Intergenic	PAG1 - UBE2HP1	55824	646463		      127.44	       15.37	rs12216812-?	rs12216812	0	12216812	Intergenic	1	0.088	3E-9	8.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		8q23.1	8	109205037	Intergenic	TRHR - NUDCD1	7201	84955		       85.45	       35.88	rs7823896-?	rs7823896	0	7823896	Intergenic	1	0.160	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9p24.1	9	7734250	Intergenic	PPIAP33 - TMEM261	392285	90871		      135.88	       62.24	rs10758892-?	rs10758892	0	10758892	Intergenic	1	0.059	9E-6	5.045757490560675		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9p23	9	9924724	PTPRD	PTPRD			5789			rs7849581-?	rs7849581	0	7849581	intron	0	0.012	9E-7	6.045757490560675		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9q31.1	9	104826496	ABCA1	ABCA1			19			rs4149311-?	rs4149311	0	4149311	intron	0	0.134	9E-6	5.045757490560675		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9q31.1	9	104828991	Intergenic	ABCA1			19			rs7031748-?	rs7031748	1	2853579	cds-synon	0	0.134	8E-6	5.096910013008055		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		9q33.3	9	123392075	DENND1A	DENND1A			57706			rs872863-?	rs872863	0	872863	intron	0	0.082	2E-11	10.69897000433602		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		10p15.1	10	6273831	Intergenic	MIR3155B - SDCBPP1	100628560	100128930		      121.57	       19.27	rs7077335-?	rs7077335	0	7077335	Intergenic	1	0.011	2E-12	11.69897000433602		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		10q25.3	10	113475355	Intergenic	RPS15AP30 - HABP2	100271607	3026		      487.49	       75.48	rs1472750-?	rs1472750	0	1472750	Intergenic	1	0.075	5E-9	8.301029995663981		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		10q26.13	10	122153815	TACC2	TACC2			10579			rs17103138-?	rs17103138	0	17103138	intron	0	0.086	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q12.1	11	56474785	Intergenic	OR5M3 - OR5M2P	219482	79523		        4.25	        4.71	rs7939886-?	rs7939886	0	7939886	Intergenic	1	0.906	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q22.1	11	100172688	CNTN5	CNTN5			53942			rs12803066-?	rs12803066	0	12803066	intron	0	.518	4E-6	5.397940008672037		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q24.3	11	128712662	FLI1	FLI1			2313			rs665440-?	rs665440	0	665440	intron	0	0.073	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q25	11	134612572	Intergenic	B3GAT1 - A1BG	27087			      200.59		rs1944866-?	rs1944866	0	1944866	Intergenic	1	0.871	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q25	11	134756993	Intergenic	B3GAT1 - A1BG	27087			      345.01		rs11223996-?	rs11223996	0	11223996	Intergenic	1	0.143	7E-7	6.154901959985743		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		12p13.31	12	6574121	CHD4	CHD4;LOC100127974			1108;100127974			rs1057510-?	rs1057510	0	1057510	intron;intron	0	0.154	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		12q21.2	12	77505730	Intergenic	NAV3			89795			rs17788937-?	rs17788937	0	17788937	intron	0	0.786	4E-15	14.39794000867204		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		13q14.13	13	45326132	Intergenic	KCTD4 - TPT1	386618	7178		      125.09	        7.34	rs7323755-?	rs7323755	0	7323755	Intergenic	1	0.041	2E-13	12.69897000433602		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		13q22.1	13	73167012	Intergenic	RNU6-66P - RNU7-89P	100873770	100873844		       53.99	        1.08	rs11838472-?	rs11838472	0	11838472	Intergenic	1	0.031	3E-17	16.52287874528034		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		13q33.2	13	105444463	Intergenic	RPL7P45 - DAOA-AS1	100271225	282706		      629.33	       14.59	rs11618212-?	rs11618212	0	11618212	Intergenic	1	0.213	5E-12	11.30102999566398		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		15q21.3	15	57788419	Intergenic	POLR2M - ALDH1A2	81488	8854		       70.86	      165.01	rs1559777-?	rs1559777	0	1559777	Intergenic	1	0.2	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		15q24.1	15	74013625	PML	PML			5371			rs8039584-?	rs8039584	0	8039584	intron	0	0.044	5E-8	7.30102999566398		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		16q21	16	60699699	Intergenic	GNPATP - RPS27AP16	100130060	643358		       42.97	      355.72	rs17822114-?	rs17822114	0	17822114	Intergenic	1	0.034	3E-18	17.52287874528034		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		16q21	16	62066307	Intergenic	CDH8 - RNU6-21P	1006	100302738		       29.27	      121.23	rs8050940-?	rs8050940	0	8050940	Intergenic	1	0.02	1E-26	26		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17p13.2	17	3489774	ASPA	ASPA;SPATA22			443;84690			rs923375-?	rs923375	0	923375	intron;intron	0	0.188	4E-16	15.39794000867204		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17p12	17	11900144	DNAH9	DNAH9			1770			rs4792192-?	rs4792192	0	4792192	intron	0	0.115	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17q11.2	17	31006498	LOC646021	LOC646021			646021			rs17826255-?	rs17826255	0	17826255	intron	0	0.067	8E-9	8.096910013008056		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17q25.3	17	80763487	KIAA1303	RPTOR			57521			rs7215564-?	rs7215564	0	7215564	intron	0	0.1	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		19q12	19	30499793	ZNF536	ZNF536			9745			rs3786800-?	rs3786800	0	3786800	intron	0	.803	3E-12	11.52287874528034		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		19q13.31	19	44384114	ZNF285A	ZNF112 - ZNF285	7771	26974		       27.41	        1.53	rs4142248-?	rs4142248	0	4142248	Intergenic	1	0.058	3E-15	14.52287874528034		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		21q22.13	21	36437079	Intergenic	ATP5J2LP - CLDN14	101241877	23562		       47.97	       23.54	rs9984974-?	rs9984974	0	9984974	Intergenic	1	0.140	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [152,234]	N
01/16/2013	23049088	Meng W	10/09/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/23049088	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		22q12.2	22	29397652	Intergenic	SNORD125 - RFPL4AP6	100113380	100130079		       64.39	       35.69	rs2267138-?	rs2267138	0	2267138	Intergenic	1	0.131	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [152,234]	N
12/21/2012	23043469	Menzel S	10/09/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/23043469	HbA2 levels in normal adults are influenced by two distinct genetic mechanisms.	HbA2 levels	2,322 European ancestry individuals	1,716 European ancestry individuals	6q23.3	6	135097880	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-C	rs9399137	0	9399137	Intergenic	1	0.26	5E-9	8.301029995663981		NR	NR	Illumina [531,038]	N
12/21/2012	23043469	Menzel S	10/09/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/23043469	HbA2 levels in normal adults are influenced by two distinct genetic mechanisms.	HbA2 levels	2,322 European ancestry individuals	1,716 European ancestry individuals	11p15.4	11	5204217	HBB	OR51V1 - HBB	283111	3043		        3.52	       21.25	rs7950726-A	rs7950726	0	7950726	Intergenic	1	0.12	1E-11	11		NR	NR	Illumina [531,038]	N
12/21/2012	23056639	de Boer RA	10/09/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23056639	A genome-wide association study of circulating galectin-3.	Protein biomarker	3,776 European ancestry individuals	3,516 individuals	9q34.2	9	133266804	ABO	ABO			28			rs644234-G	rs644234	0	644234	intron	0	0.35	4E-47	46.39794000867204	(Galectin-3)	    .07	[0.059-0.078] unit decrease	Illumina [2,269,099] (imputed)	N
12/21/2012	23056639	de Boer RA	10/09/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23056639	A genome-wide association study of circulating galectin-3.	Protein biomarker	3,776 European ancestry individuals	3,516 individuals	14q22.3	14	55147918	LGALS3, DLGAP5	DLGAP5			9787			rs2274273-A	rs2274273	0	2274273	nearGene-3	0	0.41	2E-188	187.698970004336	(Galectin-3)	    .19	[0.17-0.20] unit decrease	Illumina [2,269,099] (imputed)	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	2q12.1	2	102355405	IL1RL1, IL18R1, IL18RAP	IL18R1			8809			rs13015714-G	rs13015714	0	13015714	nearGene-5	0	0.412	8E-18	17.09691001300806		   1.27	[1.20-1.34] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.33	6	31304544	HLA-C	TRNAI25			100189401			rs9368677-G	rs9368677	0	9368677		0	0.798	1E-17	17		   1.36	[1.27-1.46] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	6	32190542	GPSM3	PBX2;GPSM3			5089;63940			rs176095-T	rs176095	0	176095	nearGene-5;intron	0	0.81	8E-20	19.09691001300806		   1.40	[1.30-1.51] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	6p21.32	6	32341131	C6orf10	C6orf10			10665			rs9469099-G	rs9469099	0	9469099	intron	0	0.909	5E-19	18.30102999566398		   1.61	[1.44-1.80] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	11p15.4	11	7946812	OR10A3, NLRP10	OR10A3 - NLRP10	26496	338322		        7.29	       12.80	rs878860-G	rs878860	0	878860	Intergenic	1	0.537	2E-22	21.69897000433602		   1.31	[1.24-1.38] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	2q13	2	111246290	LOC100505634	LOC101927260			101927260			rs2271404-G	rs2271404	0	2271404	ncRNA	0	0.238	3E-7	6.522878745280337		   1.17	[1.10-1.25] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	3p22.3	3	33023847	GLB1	GLB1			2720			rs7613051-A	rs7613051	0	7613051	intron	0	0.453	6E-21	20.22184874961635		   1.29	[1.22-1.36] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	3q13.2	3	112657461	CCDC80, LOC100630917	CCDC80 - CD200R1L	151887	344807		       16.32	      158.25	rs12634229-G	rs12634229	0	12634229	Intergenic	1	0.327	2E-19	18.69897000433602		   1.29	[1.22-1.37] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	7p22.2	7	3089155	CARD11	CARD11 - SDK1	84433	221935		       45.21	      212.29	rs4722404-G	rs4722404	0	4722404	Intergenic	1	0.326	8E-9	8.096910013008056		   1.18	[1.12-1.25] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	8q24.21	8	128415272	MIR1208	LINC01263			101927774			rs7815944-A	rs7815944	0	7815944	intron	0	0.673	4E-7	6.397940008672037		   1.16	[1.10-1.23] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	10q21.2	10	62638706	ZNF365	ZNF365			22891			rs10995251-C	rs10995251	0	10995251	intron	0	0.511	6E-20	19.22184874961636		   1.28	[1.22-1.36] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	10q21.3	10	62800710	ADO, EGR2	ALDH7A1P4 - ADO	544	84890		       59.32	        4.05	rs1444418-A	rs1444418	0	1444418	Intergenic	1	0.676	2E-7	6.698970004336019		   1.17	[1.10-1.24] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	16p13.13	16	11116558	CLEC16A	CLEC16A			23274			rs9923856-A	rs9923856	0	9923856	intron	0	0.781	6E-6	5.221848749616356		   1.17	[1.09-1.25] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	20q13.2	20	54190682	CYP24A1, PFDN4	CYP24A1 - PFDN4	1591	5203		       16.71	       17.28	rs16999165-T	rs16999165	0	16999165	Intergenic	1	0.692	2E-8	7.698970004336018		   1.19	[1.12-1.26] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	11q13.5	11	76621166	C11orf30	C11orf30 - LRRC32	56946	2615		       68.27	       36.36	rs11236809-G	rs11236809	0	11236809	Intergenic	1	0.25	3E-6	5.522878745280337		   1.24	[NR] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	11q13.1	11	65745636	OVOL1	KRT8P26 - AP5B1	390211	91056		       17.62	       28.26	rs593982-C	rs593982	0	593982	Intergenic	1	0.53	6E-7	6.221848749616355		   1.23	[NR] 	Illumina [606,164]	N
12/21/2012	23042114	Hirota T	10/07/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23042114	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	5q31.1	5	132660151	KIF3A, IL13	IL13			3596			rs1295686-T	rs1295686	0	1295686	intron	0	0.30	2E-6	5.698970004336018		   1.22	[NR] 	Illumina [606,164]	N
01/09/2013	23053960	Lee YH	10/07/2012	Mol Biol Rep	http://www.ncbi.nlm.nih.gov/pubmed/23053960	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls, 	NR	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	NR	4E-14	13.39794000867204		   1.48	[1.335-1.634] 	Illumina [737,984]	N
01/09/2013	23053960	Lee YH	10/07/2012	Mol Biol Rep	http://www.ncbi.nlm.nih.gov/pubmed/23053960	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls, 	NR	7q32.1	7	128977412	TNPO3	TNPO3			23534			rs12531711-A	rs12531711	0	12531711	intron	0	NR	6E-13	12.22184874961636		   1.59	[1.403-1.808] 	Illumina [737,984]	N
01/09/2013	23053960	Lee YH	10/07/2012	Mol Biol Rep	http://www.ncbi.nlm.nih.gov/pubmed/23053960	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls, 	NR	8p23.1	8	11491677	BLK	FAM167A - BLK	83648	640		       24.91	        2.34	rs13277113-A	rs13277113	0	13277113	Intergenic	1	NR	2E-10	9.698970004336017		   1.39	[1.256-1.540] 	Illumina [737,984]	N
01/09/2013	23053960	Lee YH	10/07/2012	Mol Biol Rep	http://www.ncbi.nlm.nih.gov/pubmed/23053960	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls, 	NR	7q32.1	7	128928906	IRF5	KCP - IRF5	375616	3663		       18.19	        9.03	rs729302-A	rs729302	0	729302	Intergenic	1	NR	4E-8	7.397940008672037		   1.29	[1.41-1.18] 	Illumina [737,984]	N
01/09/2013	23053960	Lee YH	10/07/2012	Mol Biol Rep	http://www.ncbi.nlm.nih.gov/pubmed/23053960	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls, 	NR	6p21.32	6	32762309	HLA-DQA2	HLA-DQB2			3120			rs2051549-?	rs2051549	0	2051549	intron	0	NR	3E-22	21.52287874528033		NR	NR	Illumina [737,984]	N
01/08/2013	23041938	Lee YJ	10/06/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/23041938	Genome-wide association study identifies GIMAP as a novel susceptibility locus for Behcet's disease.	Behcet's disease	367 Korean ancestry cases, 800 Korean ancestry controls	363 Japanese ancestry cases, 272 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [594,591]	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	7p21.1	7	19009765	HDAC9	TWIST1			7291			rs2107595-A	rs2107595	0	2107595	intron	0	0.16	4E-6	5.397940008672037	(IS)	   1.12	[1.07-1.17] 	Affymetrix & Illumina [NR] (imputed)	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	7p21.1	7	19009765	HDAC9	TWIST1			7291			rs2107595-A	rs2107595	0	2107595	intron	0	0.16	2E-16	15.69897000433602	(LVD)	   1.39	[1.27-1.53] 	Affymetrix & Illumina [NR] (imputed)	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	4q25	4	110796911	PITX2	PITX2 - MIR297	5308	100126354		      154.79	       63.67	rs6843082-G	rs6843082	0	6843082	Intergenic	1	0.21	2E-7	6.698970004336019	(IS)	   1.11	[1.06-1.15] 	Affymetrix & Illumina [NR] (imputed)	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	4q25	4	110796911	PITX2	PITX2 - MIR297	5308	100126354		      154.79	       63.67	rs6843082-G	rs6843082	0	6843082	Intergenic	1	0.21	3E-16	15.52287874528034	(CS)	   1.36	[1.27-1.47] 	Affymetrix & Illumina [NR] (imputed)	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	16q22.3	16	73034779	ZFHX3	ZFHX3			463			rs879324-A	rs879324	0	879324	intron	0	0.19	2E-8	7.698970004336018	(CS)	   1.25	[1.15-1.35] 	Affymetrix & Illumina [NR] (imputed)	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	3q23	3	141080371	SPSB4	SPSB4			92369			rs16851055-G	rs16851055	0	16851055	intron	0	0.81	6E-7	6.221848749616355	(IS)	   1.12	[1.07-1.17] 	Affymetrix & Illumina [NR] (imputed)	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	2p16.2	2	53555422	Intergenic	MIR4431 - ASB3	100616431	51130		      852.81	      114.56	rs13407662-T	rs13407662	0	13407662	Intergenic	1	0.04	5E-8	7.30102999566398	(SVD)	   1.95	[1.53-2.48] 	Affymetrix & Illumina [NR] (imputed)	N
01/09/2013	23041239	Traylor M	10/05/2012	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23041239	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	12q24.12	12	111774029	ALDH2	ALDH2			217			rs2238151-T	rs2238151	0	2238151	intron	0	0.66	1E-6	5.999999999999999	(FS)	   1.13	[1.08-1.19] 	Affymetrix & Illumina [NR] (imputed)	N
12/21/2012	23054467	Postula M	10/04/2012	J Thromb Thrombolysis	http://www.ncbi.nlm.nih.gov/pubmed/23054467	New single nucleotide polymorphisms associated with differences in platelets reactivity in patients with type 2 diabetes treated with acetylsalicylic acid: genome-wide association approach and pooled DNA strategy.	Platelet reactivity	289 European ancestry type 2 diabetes cases treated with acetylsalicylic acid	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [200,251] (pooled)	N
12/21/2012	23031429	Surakka I	10/03/2012	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23031429	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Apolipoprotein Levels	1,720 European ancestry monozygotic twins	NA	10q26.2	10	126979126	DOCK1	DOCK1			1793			rs9733352-C	rs9733352	0	9733352	intron	0	NR	4E-8	7.397940008672037	(APOA2)	    .06	[0.038-0.082] unit increase	Illumina [~2.5 million] (imputed)	N
12/21/2012	23031429	Surakka I	10/03/2012	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23031429	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Apolipoprotein Levels	1,720 European ancestry monozygotic twins	NA	19q13.32	19	44912383	APOE, APOC1	APOC1			341			rs445925-G	rs445925	0	445925	nearGene-5	0	NR	2E-14	13.69897000433602	(APOB)	    .15	[0.11-0.19] unit increase	Illumina [~2.5 million] (imputed)	N
12/21/2012	23031429	Surakka I	10/03/2012	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23031429	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Apolipoprotein Levels	1,720 European ancestry monozygotic twins	NA	19q13.32	19	44912383	APOE/APOC1	APOC1			341			rs445925-G	rs445925	0	445925	nearGene-5	0	NR	4E-11	10.39794000867204	(APOE)	    .23	[0.16-0.30] unit decrease	Illumina [~2.5 million] (imputed)	N
12/21/2012	23031429	Surakka I	10/03/2012	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23031429	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Cholesterol and Triglycerides	1,720 European ancestry monozygotic twins	1,261 European ancestry monozygotic twins	1q32.1	1	206453482	SRGAP2	SRGAP2			23380			rs2483058-C	rs2483058	0	2483058	intron	0	NR	9E-7	6.045757490560675	(HDL)	    .20	[0.13-0.28] unit increase	Illumina [~2.5 million] (imputed)	N
12/11/2012	23023329	Xu J	09/30/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23023329	Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.	Prostate cancer	1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls	9q31.2	9	107394019	RAD23B, KLF4	RAD23B - HMGN2P32	5887	100874473		       61.83	       64.02	rs817826-C	rs817826	0	817826	Intergenic	1	0.084	5E-14	13.30102999566398		   1.41	[1.29-1.54] 	Illumina [587,294]	N
12/11/2012	23023329	Xu J	09/30/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23023329	Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.	Prostate cancer	1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls	19q13.42	19	54293995	LILRA3	MIR4752 - LILRA5	100616171	353514		       11.82	       13.08	rs103294-C	rs103294	0	103294	Intergenic	1	0.238	5E-16	15.30102999566398		   1.28	[1.21-1.36] 	Illumina [587,294]	N
12/11/2012	23023329	Xu J	09/30/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23023329	Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.	Prostate cancer	1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls	8q24.21	8	127091692	Intergenic	PRNCR1			101867536			rs1456315-?	rs1456315	0	1456315	ncRNA	0	NR	1E-12	12		NR	NR	Illumina [587,294]	N
12/07/2012	23028483	Ramasamy A	09/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23028483	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	2q12.1	2	102338622	IL1RL1, IL18R1	IL1RL1			9173			rs13408661-G	rs13408661	0	13408661	intron	0	0.84	1E-9	8.999999999999998		   1.23	[1.15-1.31] 	Affymetrix & Ilumina [~2.2 million] (imputed)	N
12/07/2012	23028483	Ramasamy A	09/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23028483	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	6p21.32	6	32411712	BTNL2, HLA-DRA	TRNAI25			100189401			rs9268516-T	rs9268516	0	9268516		0	0.24	1E-8	8		   1.15	[1.10-1.21] 	Affymetrix & Ilumina [~2.2 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	2p23.3	2	27508073	GCKR, FNDC4	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.41	3E-14	13.52287874528034	(EA)	    .01	[0.0093-0.0155] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	19q13.12	19	35064286	HPN, SCN1B	HPN;HPN-AS1			3249;100128675			rs4806073-C	rs4806073	0	4806073	intron;intron	0	0.93	3E-15	14.52287874528034	(EA)	    .03	[0.019-0.032] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	2p23.3	2	27508073	GCKR, FNDC4	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.56	2E-8	7.698970004336018	(Japanese)	    .03	[0.017-0.037] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	17p13.3	17	1715069	SERPINF2, WDR81	MIR22HG;WDR81;MIR22			84981;124997;407004			rs11078597-C	rs11078597	0	11078597	intron;nearGene-5;nearGene-5	0	0.18	7E-13	12.15490195998574	(EA)	    .02	[0.015-0.026] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	18q21.33	18	62458879	TNFRSF11A, ZCCHC2	ACTBP9 - ZCCHC2	69	54877		       15.16	       64.55	rs694419-T	rs694419	0	694419	Intergenic	1	0.52	1E-8	8	(EA)	    .01	[0.0062-0.0124] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	19q13.33	19	49496752	RPS11, FCGRT	RPS11;SNORD35B			6205;84546			rs2280401-A	rs2280401	0	2280401	intron;nearGene-5	0	0.17	8E-7	6.096910013008056	(EA)	    .01	[0.0074-0.0168] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	15q15.3	15	43927409	FRMD5, WDR76	FRMD5			84978			rs16948098-A	rs16948098	0	16948098	intron	0	0.06	2E-8	7.698970004336018	(EA)	    .02	[0.015-0.031] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	11p11.2	11	47419207	PSMC3	PSMC3			5702			rs2293579-A	rs2293579	0	2293579	intron	0	0.40	8E-8	7.096910013008055	(EA)	    .01	[0.0060-0.0126] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	19q13.12	19	35068570	HPN, SCN1B	HPN-AS1			100128675			rs11671010-?	rs11671010	0	11671010	intron	0	NR	2E-13	12.69897000433602	(EA)	NR	NR	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	2p23.3	2	27508073	GCKR-FNDC4	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.41	4E-19	18.39794000867203		    .01	[0.011-0.017] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	19q13.12	19	35064286	HPN, SCN1B	HPN;HPN-AS1			3249;100128675			rs4806073-C	rs4806073	0	4806073	intron;intron	0	0.93	4E-18	17.39794000867204		    .03	[0.021-0.033] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	17p13.3	17	1715069	SERPINF2, WDR81	MIR22HG;WDR81;MIR22			84981;124997;407004			rs11078597-C	rs11078597	0	11078597	intron;nearGene-5;nearGene-5	0	0.18	1E-14	14		    .02	[0.015-0.026] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	18q21.33	18	62458879	TNFRSF11A, ZCCHC2	ACTBP9 - ZCCHC2	69	54877		       15.16	       64.55	rs694419-T	rs694419	0	694419	Intergenic	1	0.52	4E-9	8.397940008672036		    .01	[0.0064-0.0126] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	19q13.33	19	49496752	RPS11, FCGRT	RPS11;SNORD35B			6205;84546			rs2280401-A	rs2280401	0	2280401	intron;nearGene-5	0	0.17	6E-9	8.221848749616356		    .01	[0.0089-0.0179] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	11p11.2	11	47419207	PSMC3	PSMC3			5702			rs2293579-A	rs2293579	0	2293579	intron	0	0.40	1E-7	7		    .01	[0.0055-0.0117] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin level	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NR	15q25.1	15	78606381	CHRNA3, CHRNA5	CHRNA3			1136			rs12914385-C	rs12914385	0	12914385	intron	0	0.61	6E-7	6.221848749616355		    .01	[0.0048-0.0106] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	17p11.2	17	16945436	TNFRSF13B	TNFRSF13B			23495			rs4561508-T	rs4561508	0	4561508	intron	0	0.11	1E-9	8.999999999999998	(EA)	    .04	[0.024-0.048] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	6p21.32	6	32142202	Intergenic	TRNAI25			100189401			rs204999-A	rs204999	0	204999		0	0.74	3E-9	8.522878745280337	(EA)	    .03	[0.017-0.033] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	17p11.2	17	16945436	TNFRSF13B	TNFRSF13B			23495			rs4561508-T	rs4561508	0	4561508	intron	0	0.37	2E-11	10.69897000433602	(Japanese)	    .05	[-0.09020-0.18420] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	2p23.3	2	27508073	GCKR, FNDC4	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.56	4E-6	5.397940008672037	(Japanese)	    .03	[0.017-0.045] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	10q21.2	10	61876772	ARID5B	C10orf107 - ARID5B	219621	84159		      110.01	       24.48	rs2675609-T	rs2675609	0	2675609	Intergenic	1	0.43	2E-6	5.698970004336018	(Japanese)	    .04	[0.022-0.050] unit decrease	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	19q13.33	19	49496752	RPS11, FCGRT	RPS11;SNORD35B			6205;84546			rs2280401-A	rs2280401	0	2280401	intron;nearGene-5	0	0.16	7E-8	7.154901959985742	(Japanese)	    .05	[0.032-0.068] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	17p11.2	17	16945436	TNFRSF13B	TNFRSF13B			23495			rs4561508-T	rs4561508	0	4561508	intron	0	0.11	2E-18	17.69897000433602		    .04	[0.031-0.049] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	6p21.32	6	32142202	Intergenic	TRNAI25			100189401			rs204999-A	rs204999	0	204999		0	0.74	4E-11	10.39794000867204		    .03	[0.019-0.034] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	5q15	5	95899087	ELL2	ELL2			22936			rs3777200-T	rs3777200	0	3777200	intron	0	0.27	1E-8	8		    .02	[0.013-0.027] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	2p23.3	2	27508073	GCKR, FNDC4	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.44	6E-8	7.221848749616355		    .02	[0.011-0.024] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	8q21.13	8	81115437	PAG1	PAG1 - UBE2HP1	55824	646463		        3.37	      139.45	rs10097731-T	rs10097731	0	10097731	Intergenic	1	0.15	6E-8	7.221848749616355		    .03	[0.016-0.034] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/21/2012	23022100	Franceschini N	09/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23022100	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NR	19q13.33	19	49496752	RPS11, FCGRT	RPS11;SNORD35B			6205;84546			rs2280401-A	rs2280401	0	2280401	intron;nearGene-5	0	0.16	3E-6	5.522878745280337		    .02	[0.012-0.030] unit increase	Illumina and Affymetrix [~2.5 million] (imputed)	N
12/04/2012	23021708	Kerns SL	09/26/2012	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/23021708	A 2-stage genome-wide association study to identify single nucleotide polymorphisms associated with development of erectile dysfunction following radiation therapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	132 cases of African American, European ancestry, Hispanic/Latin American ancestry,  East Asian ancestry, South Asian ancestries, 103 controls of African American, European ancestry, Hispanic/Latin American ancestry,  East Asian ancestry, South Asian ancestries	128 cases of African American, European ancestry, Hispanic/Latin American ancestry,  East Asian ancestry, South Asian ancestries, 102 controls of African American, European ancestry, Hispanic/Latin American ancestry,  East Asian ancestry, South Asian ancestries	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [614,453]	N
12/21/2012	23049750	Kumasaka N	09/25/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23049750	Haplotypes with copy number and single nucleotide polymorphisms in CYP2A6 locus are associated with smoking quantity in a Japanese population.	Smoking behavior	11,696 Japanese ancestry smokers	5,462 Japanese ancestry smokers	19q13.2	19	40857860	CYP2A6	CYP2A6 - CYP2A7	1548	1549		        7.41	       17.58	rs8102683-?	rs8102683	0	8102683	Intergenic	1	NR	4E-42	41.39794000867203		   2.76	[2.36-3.16] unit increase	Illumina [2,312,503] (imputed)	N
12/21/2012	23049750	Kumasaka N	09/25/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23049750	Haplotypes with copy number and single nucleotide polymorphisms in CYP2A6 locus are associated with smoking quantity in a Japanese population.	Smoking behavior	11,696 Japanese ancestry smokers	5,462 Japanese ancestry smokers	7q31.31	7	118519495	NR	ANKRD7 - GTF3AP6	56311	100135063		      276.76	      360.69	rs2106595-G	rs2106595	0	2106595	Intergenic	1	NR	5E-6	5.301029995663981		    .88	[0.51-1.25] unit increase	Illumina [2,312,503] (imputed)	N
12/21/2012	23049750	Kumasaka N	09/25/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/23049750	Haplotypes with copy number and single nucleotide polymorphisms in CYP2A6 locus are associated with smoking quantity in a Japanese population.	Smoking behavior	11,696 Japanese ancestry smokers	5,462 Japanese ancestry smokers	19q13.2	19	40848628	NR	CYP2A6			1548			rs1801272-T	rs1801272	0	1801272	missense	0	0.012	5E-6	5.301029995663981		   9.40	[5.48-13.32] unit decrease	Illumina [2,312,503] (imputed)	N
12/05/2012	23001564	Mangino M	09/25/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23001564	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	19p12	19	22176638	ZNF676	VN1R85P - ZNF676	100312830	163223		        1.45	        2.46	rs412658-T	rs412658	0	412658	Intergenic	1	0.3564	1E-8	8		    .05	[0.032-0.067] unit increase	Affymetrix & Illumina [2.5 million] (imputed)	N
12/05/2012	23001564	Mangino M	09/25/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23001564	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	17p13.1	17	8232774	CTC1	CTC1			80169			rs3027234-T	rs3027234	0	3027234	intron	0	0.1794	2E-8	7.698970004336018		    .06	[0.036-0.079] unit decrease	Affymetrix & Illumina [2.5 million] (imputed)	N
12/05/2012	23001564	Mangino M	09/25/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23001564	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	10q24.33	10	103916188	OBFC1	OBFC1			79991			rs9419958-T	rs9419958	0	9419958	intron	0	0.1353	9E-11	10.04575749056067		    .08	[0.057-0.108] unit increase	Affymetrix & Illumina [2.5 million] (imputed)	N
12/05/2012	23001564	Mangino M	09/25/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/23001564	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	3q26.2	3	169779797	TERC	MYNN			55892			rs1317082-G	rs1317082	0	1317082	intron	0	0.2875	1E-8	8		    .07	[0.046-0.089] unit increase	Affymetrix & Illumina [2.5 million] (imputed)	N
12/05/2012	23010768	Meier S	09/25/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23010768	Genome-wide significant association between a 'negative mood delusions' dimension in bipolar disorder and genetic variation on chromosome 3q26.1.	Bipolar disorder (Negative mood delusions)	927 European ancestry cases, 2,168 European ancestry controls	1,247 European ancestry cases, 1,434 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [378,570]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1p31.1	1	82589116	TTLL7 	ST13P20 - ARF4P5	729828	100316867		      866.06	      983.60	rs10874322-?  	rs10874322 	0	10874322	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1q43	1	237457939	RYR2 	RYR2			6262			rs1478912-? 	rs1478912 	0	1478912	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1q44	1	247051576	ZNF670 	ZNF670;ZNF670-ZNF695			93474;100533111			rs4925540-?  	rs4925540 	0	4925540	intron;intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	2q12.1	2	104542180	POU3F3 	LINC01103 - RPL23AP27	101927360	100271456		       31.67	      136.05	rs17624523-?  	rs17624523 	0	17624523	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	3p25.1	3	14439270	SLC6A6 	SLC6A6			6533			rs6790433-?  	rs6790433 	0	6790433	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	5p13.1	5	42288491	GHR 	MTHFD2P6 - GHR	100130042	2690		      320.41	      134.98	rs11748684-?  	rs11748684 	0	11748684	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	7q21.11	7	82102130	CACNA2D1 	CACNA2D1			781			rs258671-?  	rs258671 	0	258671	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	9p24.3	9	1456797	Intergenic	RNA5SP279 - SMARCA2	100873532	6595		      122.84	      558.42	rs1412259-? 	rs1412259 	0	1412259	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	11p15.3	11	12050956	DKK3 	DKK3 - MICAL2	27122	9645		       41.13	       59.62	rs923175-?  	rs923175 	0	923175	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	11q14.3	11	89769208	TRIM49 	UBTFL2 - TRIM64DP	120126	727828		       15.23	        7.77	rs2130017-?  	rs2130017 	0	2130017	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	17q21.33	17	50211709	COL1A1 	COL1A1 - SUMO2P7	1277	100131823		       10.07	       24.14	rs2586502-?  	rs2586502 	0	2586502	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	18q11.2	18	24556605	HRH4 	HRH4 - RAC1P1	59340	387612		       76.65	      128.87	rs12954803-?  	rs12954803 	0	12954803	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	18q21.1	18	48289046	KIAA0427	ZBTB7C			201501			rs1944582-?	rs1944582	0	1944582	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	19p12	19	24172691	ZNF254 	HAVCR1P1 - LINC00662	100101266	148189		        9.24	     3617.80	rs11668609-?  	rs11668609 	0	11668609	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	NR	19		OSCAR 	 - 						rs10423754-?  	rs10423754 		10423754			NR	9E-6			NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	20p12.1	20	16555769	C20orf23 	KIF16B			55614			rs6044112-?  	rs6044112 	0	6044112	intron	0	NR	7E-7	6.154901959985743		NR	NR	Affymetrix & Illumina [~1.3 Million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1p36.31	1	5853561	NPHP4 	MIR4417 - MIR4689	100616489	100616421		      289.42	        9.11	rs548726-? 	rs548726 	0	548726	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	5q33.3	5	159477305	IL12B 	RNU4ATAC2P - ADRA1B	100873889	147		      159.14	      439.43	rs12657996-? 	rs12657996 	0	12657996	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	7p21.3	7	12351693	TMEM106B	VWDE			221806			rs6967385-?	rs6967385	0	6967385	missense	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	10q21.2	10	61547717	TMEM26 	TMEM26 - C10orf107	219623	219621		       94.27	      115.23	rs2787702-? 	rs2787702 	0	2787702	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	10q21.2	10	61589009	C10orf107 	TMEM26 - C10orf107	219623	219621		      135.56	       73.94	rs1350172-? 	rs1350172 	0	1350172	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	10q22.1	10	69503508	TSPAN15 	TSPAN15			23555			rs1227969-? 	rs1227969 	0	1227969	intron	0	NR	6E-7	6.221848749616355		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	11q24.1	11	121333892	SC5DL 	SC5D - BMPR1APS2	6309	100533800		       20.48	       27.96	rs4936613-? 	rs4936613 	0	4936613	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	15q26.3	15	100711514	ASB7 	ASB7 - PHF5HP	140460	450250		       59.81	      134.32	rs184234-? 	rs184234 	0	184234	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	16p11.2	16	29895225	SEZ6L2 	SEZ6L2			26470			rs4787484-? 	rs4787484 	0	4787484	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	17q21.31	17	43987619	PYY 	PYY			5697			rs9895585-? 	rs9895585 	0	9895585	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	19p12	19	24039984	ZNF254 	ZNF254			9534			rs7260598-? 	rs7260598 	0	7260598	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	21q22.3	21	41855386	PRDM15 	PRDM15			63977			rs915832-?	rs915832 	0	915832	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/06/2012	23006423	Niu N M D Ph D	09/24/2012	BMC Cancer	http://www.ncbi.nlm.nih.gov/pubmed/23006423 	Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	Xq27.1	23	139035247	FGF13 	FGF13			2258			rs10521792-? 	rs10521792 	0	10521792	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [~1.3 million]	N
12/04/2012	23017229	Voruganti VS	09/24/2012	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/23017229	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 	815 Hispanic children	NA	1q23.2	1	159205564	DARC	ACKR1			2532			rs12075-A	rs12075	0	12075	missense	0	0.43	1E-21	21		NR	NR	Ilumina [NR]	N
12/04/2012	23017229	Voruganti VS	09/24/2012	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/23017229	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 	815 Hispanic children	NA	NR			NR	 - 						snp2-1167588-?	snp2-1167588					NR	7E-8			NR	NR	Ilumina [NR]	N
12/04/2012	23017229	Voruganti VS	09/24/2012	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/23017229	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 	815 Hispanic children	NA	3p21.31	3	46240900	CCR3	CCR3			1232			rs12636651-?	rs12636651	0	12636651	nearGene-5	0	NR	7E-9	8.154901959985743		NR	NR	Ilumina [NR]	N
12/04/2012	23017229	Voruganti VS	09/24/2012	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/23017229	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 	815 Hispanic children	NA	9q34.3	9	136371144	CARD9	CARD9			64170			rs34971035-?	rs34971035	0	34971035	cds-synon	0	NR	5E-8	7.30102999566398		NR	NR	Ilumina [NR]	N
12/04/2012	23017229	Voruganti VS	09/24/2012	Cytokine	http://www.ncbi.nlm.nih.gov/pubmed/23017229	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 	815 Hispanic children	NA	NR			NR	 - 						snp10-4307576-?	snp10-4307576					NR	5E-8			NR	NR	Ilumina [NR]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	14q22.1	14	50936813	PYGL	PYGL			5836			rs7142143-C	rs7142143	0	7142143	intron	0	0.01	7E-9	8.154901959985743		   3.61	[2.34-5.57] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	3p22.1	3	39805581	MYRIP	NFU1P1 - MYRIP	100132681	25924		      160.88	        3.33	rs17079534-A	rs17079534	0	17079534	Intergenic	1	0.005	2E-7	6.698970004336019		   4.07	[2.40-6.87] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	2q23.2	2	149601110	LOC642340	LOC101929231			101929231			rs10170236-C	rs10170236	0	10170236	intron	0	0.256	4E-6	5.397940008672037		   1.45	[1.24-1.69] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1p31.3	1	66303417	PDE4B	PDE4B			5142			rs6683977-C	rs6683977	0	6683977	intron	0	0.449	5E-6	5.301029995663981		   1.41	[1.22-1.64] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	2q23.2	2	149540704	Intergenic	RPL17P13 - MMADHC	100270939	27249		      100.28	       28.93	rs7578361-C	rs7578361	0	7578361	Intergenic	1	0.276	8E-6	5.096910013008055		   1.40	[1.21-1.63] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	7q34	7	140002794	TBXAS1	TBXAS1			6916			rs17837497-A	rs17837497	0	17837497	intron	0	0.016	2E-6	5.698970004336018		   2.34	[1.65-3.31] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	7q21.11	7	78702149	MAGI2	MAGI2			9863			rs1496766-C	rs1496766	0	1496766	intron	0	0.014	5E-6	5.301029995663981		   2.84	[1.81-4.44] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	18q12.3	18	43011119	RIT2	RIT2			6014			rs9958208-A	rs9958208	0	9958208	intron	0	0.099	5E-6	5.301029995663981		   1.62	[1.32-1.99] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	10q22.1	10	70281049	NPFFR1	NPFFR1			64106			rs41322152-C	rs41322152	0	41322152	intron	0	0.012	8E-6	5.096910013008055		   2.52	[1.68-3.79] 	Affymetrix [444,044]	N
12/06/2012	23007406	Yang JJ	09/24/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/23007406	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1,267 cases of European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestries	1p31.3	1	66296783	PDE4B	PDE4B			5142			rs546784-A	rs546784	0	546784	intron	0	0.457	9E-6	5.045757490560675		   1.40	[1.20-1.62] 	Affymetrix [444,044]	N
12/02/2012	23001122	Orr N	09/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23001122	Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.	Breast cancer (male) 	823 European ancestry cases, 2,795 European ancestry controls	438 European ancestry cases, 474 European ancestry controls	1p31.1	1	84156830	PRKACB	PRKACB;LOC101927611			5567;101927611			rs903263-?	rs903263	0	903263	intron;intron	0	NR	1E-6	5.999999999999999		   1.27	[1.10-1.34] 	Illumina [447,760]	N
12/02/2012	23001122	Orr N	09/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23001122	Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.	Breast cancer (male) 	823 European ancestry cases, 2,795 European ancestry controls	438 European ancestry cases, 474 European ancestry controls	14q24.1	14	68232877	RAD51B	RAD51B			5890			rs1314913-?	rs1314913	0	1314913	intron	0	NR	3E-13	12.52287874528034		   1.57	[1.39-1.77] 	Illumina [447,760]	N
12/02/2012	23001122	Orr N	09/23/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/23001122	Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.	Breast cancer (male) 	823 European ancestry cases, 2,795 European ancestry controls	438 European ancestry cases, 474 European ancestry controls	16q12.1	16	52552429	TOX3, LOC643174	CASC16			643714			rs3803662-?	rs3803662	0	3803662	ncRNA	0	NR	4E-15	14.39794000867204		   1.50	[1.35-1.66] 	Illumina [447,760]	N
12/04/2012	22990015	Arning A	09/20/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990015	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	11q23.3	11	120156040	TRIM29	TRIM29 - OAF	23650	220323		       17.59	       55.00	rs2084898-A	rs2084898	0	2084898	Intergenic	1	0.126	4E-7	6.397940008672037	(Nonvascular)	   3.04	[NR] 	Illumina [334,581]	N
12/04/2012	22990015	Arning A	09/20/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990015	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	5p13.2	5	33879687	ADAMTS12	ADAMTS12			81792			rs1364044-A	rs1364044	0	1364044	intron	0	.296	3E-6	5.522878745280337	(All)	   1.91	[NR] 	Illumina [334,581]	N
12/04/2012	22990015	Arning A	09/20/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990015	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	11q23.3	11	120156040	TRIM29	TRIM29 - OAF	23650	220323		       17.59	       55.00	rs2084898-A	rs2084898	0	2084898	Intergenic	1	0.126	4E-6	5.397940008672037	(All)	   2.37	[NR] 	Illumina [334,581]	N
12/04/2012	22990015	Arning A	09/20/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990015	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	5q35.3	5	179236407	ADAMTS2	ADAMTS2			9509			rs469568-T	rs469568	0	469568	intron	0	0.483	8E-6	5.096910013008055	(All)	   1.77	[NR] 	Illumina [334,581]	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	2q34	2	212304043	ERBB4	ERBB4			2066			rs7588550-A	rs7588550	0	7588550	intron	0	0.95	2E-7	6.698970004336019	(T1DN)	   1.52	[1.30-1.79] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	15q26.1	15	93598604	RGMA, MCTP2	SEPHS1P2 - MCTP2	100420292	55784		      167.39	      632.94	rs12437854-G	rs12437854	0	12437854	Intergenic	1	0.04	2E-9	8.698970004336019	(ESRD vs. non-ESRD)	   1.80	[1.48-2.17] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	2q11.2	2	99844192	AFF3	AFF3			3899			rs7583877-C	rs7583877	0	7583877	intron	0	0.29	1E-8	8	(ESRD vs. non-ESRD)	   1.29	[1.18-1.40] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	20q13.33	20	60321657	RP5-1043L13.1	LOC284757			284757			rs6027506-A	rs6027506	0	6027506	ncRNA	0	0.63	5E-6	5.301029995663981	(ESRD vs. non-ESRD)	   1.22	[1.12-1.32] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	2q11.2	2	99844192	AFF3	AFF3			3899			rs7583877-C	rs7583877	0	7583877	intron	0	0.30	3E-7	6.522878745280337	(ESRD)	   1.29	[1.17-1.42] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	4q34.1	4	173653255	Intergenic	RANP6 - FBXO8	100128266	26269		       18.87	      583.40	rs11723864-G	rs11723864	0	11723864	Intergenic	1	0.11	7E-7	6.154901959985743	(ESRD)	   1.51	[1.29-1.78] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	14q22.3	14	56754421	Intergenic	RPL36AP1 - OTX2	100131379	5015		       70.64	       46.29	rs878889-A	rs878889	0	878889	Intergenic	1	0.13	8E-7	6.096910013008056	(ESRD)	   1.43	[1.24-1.65] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	20q13.33	20	60320788	RP5-1043L13.1	LOC284757			284757			rs11698685-G	rs11698685	0	11698685	ncRNA	0	0.68	1E-6	5.999999999999999	(ESRD)	   1.27	[1.15-1.39] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	8q24.13	8	122693916	RP11-973F15.1	MRPS36P3 - CDK5PS	347704	392265		      602.31	       75.31	rs4871297-A	rs4871297	0	4871297	Intergenic	1	0.52	2E-6	5.698970004336018	(ESRD)	   1.23	[1.14-1.35] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	12q24.31	12	120536707	RNF10, COQ5	RNF10			9921			rs614226-C	rs614226	0	614226	intron	0	0.83	2E-6	5.698970004336018	(ESRD)	   1.35	[1.19-1.54] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/11/2012	23028342	Sandholm N	09/20/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028342	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	20q11.21	20	32943738	Intergenic	LOC101928239			101928239			rs13045180-T	rs13045180	0	13045180	nearGene-3	0	0.19	9E-6	5.045757490560675	(ESRD)	   1.28	[1.15-1.43] 	Affymetrix & Illumina [~2.5 Million] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	3p26.2	3	3638168	Intergenic	CRBN - SUMF1	51185	285362		      458.45	      144.34	rs17034687-C	rs17034687	0	17034687	Intergenic	1	0.09	2E-9	8.698970004336019		    .23	[0.16-0.30] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32884870	PSMB9	TRNAI25			100189401			rs2187689-C	rs2187689	0	2187689		0	0.08	3E-8	7.522878745280337		    .23	[0.15-0.31] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6q26	6	161740587	PARK2	PARK2			5071			rs926849-C	rs926849	0	926849	intron	0	0.31	3E-8	7.522878745280337		    .13	[0.083-0.177] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32891935	Intergenic	TRNAI25			100189401			rs7744666-C	rs7744666	0	7744666		0	0.10	6E-8	7.221848749616355		    .20	[0.13-0.27] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32891971	Intergenic	TRNAI25			100189401			rs11969002-A	rs11969002	0	11969002		0	0.10	6E-8	7.221848749616355		    .20	[0.13-0.27] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32887940	Intergenic	TRNAI25			100189401			rs6457690-A	rs6457690	0	6457690		0	0.10	9E-8	7.045757490560674		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32888604	Intergenic	TRNAI25			100189401			rs1029296-C	rs1029296	0	1029296		0	0.10	9E-8	7.045757490560674		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32889157	Intergenic	TRNAI25			100189401			rs6936004-C	rs6936004	0	6936004		0	0.10	1E-7	7		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32894830	Intergenic	LOC100294145			100294145			rs3749982-A	rs3749982	0	3749982	ncRNA	0	0.10	1E-7	7		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32892975	Intergenic	LOC100294145			100294145			rs9469300-A	rs9469300	0	9469300	nearGene-5	0	0.10	1E-7	7		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32889642	Intergenic	TRNAI25			100189401			rs10214886-A	rs10214886	0	10214886		0	0.10	2E-7	6.698970004336019		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32886920	Intergenic	TRNAI25			100189401			rs10046257-A	rs10046257	0	10046257		0	0.10	3E-7	6.522878745280337		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	8p23.2	8	4427170	Intergenic	CSMD1			64478			rs4875102-A	rs4875102	0	4875102	intron	0	0.26	4E-7	6.397940008672037		    .12	[0.073-0.167] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p21.32	6	32888705	Intergenic	TRNAI25			100189401			rs1029295-C	rs1029295	0	1029295		0	0.10	5E-7	6.30102999566398		    .19	[0.12-0.26] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	13q31.3	13	94300578	GPC6	GPC6			10082			rs9301951-C	rs9301951	0	9301951	intron	0	0.04	9E-7	6.045757490560675		    .26	[0.15-0.37] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	10p15.2	10	3112981	PFKP	PFKP			5214			rs7896691-C	rs7896691	0	7896691	intron	0	0.10	2E-6	5.698970004336018		    .17	[0.10-0.24] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	10q22.1	10	68866673	Intergenic	STOX1			219736			rs10998466-A	rs10998466	0	10998466	intron	0	0.01	4E-6	5.397940008672037		    .53	[0.31-0.75] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	16p13.3	16	580665	PIGQ	PIGQ			9091			rs1981483-A	rs1981483	0	1981483	intron	0	0.42	4E-6	5.397940008672037		    .11	[0.065-0.155] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	8p23.2	8	4427868	Intergenic	CSMD1			64478			rs1154053-C	rs1154053	0	1154053	intron	0	0.17	4E-6	5.397940008672037		    .13	[0.075-0.185] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	10p11.22	10	31226203	Intergenic	LOC101929352			101929352			rs2484990-C	rs2484990	0	2484990	intron	0	0.01	4E-6	5.397940008672037		    .68	[0.39-0.97] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	10p11.22	10	31207045	Intergenic	LOC101929352			101929352			rs1250307-A	rs1250307	0	1250307	intron	0	0.01	4E-6	5.397940008672037		    .68	[0.39-0.97] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	16p13.3	16	611335	RAB40C	RAB40C			57799			rs7204439-C	rs7204439	0	7204439	intron	0	0.42	4E-6	5.397940008672037		    .11	[0.065-0.155] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	19q13.33	19	50217817	MYH14	MYH14			79784			rs4802666-A	rs4802666	0	4802666	intron	0	0.27	5E-6	5.301029995663981		    .13	[0.073-0.187] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	10p11.22	10	31223169	Intergenic	LOC101929352			101929352			rs2484992-C	rs2484992	0	2484992	intron	0	0.01	5E-6	5.301029995663981		    .68	[0.39-0.97] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6q21	6	113695931	Intergenic	RPS27AP11 - RPL30P8	728590	100132053		      113.93	      133.89	rs9488238-A	rs9488238	0	9488238	Intergenic	1	0.04	5E-6	5.301029995663981		    .28	[0.16-0.40] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6p24.1	6	11943293	Intergenic	ADTRP - HIVEP1	84830	3096		      163.67	       69.20	rs1205863-G	rs1205863	0	1205863	Intergenic	1	0.06	6E-6	5.221848749616356		    .21	[0.12-0.30] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	3p26.1	3	5146561	ARL8B	ARL8B			55207			rs11918654-C	rs11918654	0	11918654	intron	0	0.27	7E-6	5.154901959985742		    .11	[0.063-0.157] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	8q21.3	8	91547687	Intergenic	SLC26A7 - MRPS16P1	115111	137406		      149.53	      369.82	rs2657195-A	rs2657195	0	2657195	Intergenic	1	0.22	8E-6	5.096910013008055		    .13	[0.075-0.185] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	6q12	6	64926030	Intergenic	EYS			346007			rs11754641-C	rs11754641	0	11754641	intron	0	0.03	8E-6	5.096910013008055		    .29	[0.16-0.42] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	11q22.3	11	103658904	Intergenic	MTND1P36 - MIR4693	100506721	100616457		      250.53	      191.00	rs12805875-A	rs12805875	0	12805875	Intergenic	1	0.42	9E-6	5.045757490560675		    .09	[0.049-0.131] unit increse	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	8p23.2	8	4425096	Intergenic	CSMD1			64478			rs980238-A	rs980238	0	980238	intron	0	0.30	9E-6	5.045757490560675		    .10	[0.055-0.145] unit decrease	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	11q22.3	11	103655296	Intergenic	MTND1P36 - MIR4693	100506721	100616457		      246.92	      194.61	rs7103004-C	rs7103004	0	7103004	Intergenic	1	0.42	9E-6	5.045757490560675		    .09	[0.049-0.131] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	11q22.3	11	103659638	Intergenic	MTND1P36 - MIR4693	100506721	100616457		      251.26	      190.27	rs4554859-G	rs4554859	0	4554859	Intergenic	1	0.42	9E-6	5.045757490560675		    .09	[0.049-0.131] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	11q22.3	11	103655026	Intergenic	MTND1P36 - MIR4693	100506721	100616457		      246.65	      194.88	rs7118412-A	rs7118412	0	7118412	Intergenic	1	0.42	9E-6	5.045757490560675		    .09	[0.049-0.131] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
12/06/2012	22993228	Williams FM	09/19/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22993228	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NR	16p13.3	16	587212	Intergenic	PIGQ - RAB40C	9091	57799		        3.08	        2.15	rs2017567-C	rs2017567	0	2017567	Intergenic	1	0.42	9E-6	5.045757490560675		    .10	[0.059-0.141] unit increase	Affymetrix & Illumina [2,552,511] (imputed)	N
11/28/2012	22986903	Hansel NN	09/18/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22986903	Genome-wide study identifies two loci associated with lung function decline in mild to moderate COPD.	Chronic obstructive pulmonary disease	4,048 European ancestry cases	1,772 European ancestry cases, 4,733 cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [528,817]	N
11/28/2012	22990020	Huang J	09/18/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990020	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	3p25.2	3	12344329	PPARG	PPARG			5468			rs11128603-?	rs11128603	0	11128603	intron	0	NR	9E-8	7.045757490560674		    .07	[NR] unit increase	Affymetrix & Illumina [2,445,683] (imputed)	N
11/28/2012	22990020	Huang J	09/18/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990020	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	7q22.1	7	101126257	SERPINE1	SERPINE1			5054			rs2227631-?	rs2227631	0	2227631	nearGene-5	0	NR	3E-24	23.52287874528033		    .07	[NR] unit increase	Affymetrix & Illumina [2,445,683] (imputed)	N
11/28/2012	22990020	Huang J	09/18/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990020	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	7q22.1	7	100914499	ACHE, SLC12A9, TRIP6, SRRT, UFSP1, EPHB4, MUC3	ACHE - RPS29P15	43	100271241		       17.59	       13.84	rs6976053-?	rs6976053	0	6976053	Intergenic	1	NR	6E-13	12.22184874961636		    .05	[NR] unit increase	Affymetrix & Illumina [2,445,683] (imputed)	N
11/28/2012	22990020	Huang J	09/18/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22990020	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	11p15.2	11	13339977	ARNTL	ARNTL			406			rs6486122-?	rs6486122	0	6486122	intron	0	NR	2E-10	9.698970004336017		    .05	[NR] unit increase	Affymetrix & Illumina [2,445,683] (imputed)	N
11/29/2012	23000144	Nakamura M	09/18/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23000144	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cirrhosis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	9q32	9	114804733	TNFSF15	TNFSF15			9966			rs4979462-T	rs4979462	0	4979462	intron	0	0.46	3E-14	13.52287874528034		   1.56	[1.39-1.76] 	Affymetrix [421,245]	N
11/29/2012	23000144	Nakamura M	09/18/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23000144	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cirrhosis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	11q23.1	11	111404408	POU2AF1	POU2AF1 - BTG4	5450	54766		       24.79	       63.12	rs4938534-A	rs4938534	0	4938534	Intergenic	1	0.44	2E-8	7.698970004336018		   1.39	[1.24-1.56] 	Affymetrix [421,245]	N
11/29/2012	23000144	Nakamura M	09/18/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23000144	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cirrhosis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	5p13.2	5	35852209	IL7R	SPEF2 - IL7R	79925	3575		       37.60	        4.67	rs6890853-G	rs6890853	0	6890853	Intergenic	1	NR	4E-8	7.397940008672037		   1.47	[1.28-1.69] 	Affymetrix [421,245]	N
11/29/2012	23000144	Nakamura M	09/18/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23000144	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cirrhosis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	17q12	17	39820216	IKZF3, ZPBP2, GSDMB, ORMDL3	IKZF3			22806			rs9303277-T	rs9303277	0	9303277	intron	0	NR	4E-9	8.397940008672036		   1.44	[1.28-1.63] 	Affymetrix [421,245]	N
11/29/2012	23000144	Nakamura M	09/18/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23000144	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cirrhosis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	NR	1E-6	5.999999999999999		   1.35	[1.19-1.52] 	Affymetrix [421,245]	N
11/29/2012	23000144	Nakamura M	09/18/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23000144	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cirrhosis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	3q13.33	3	119501087	CD80	TIMMDC1			51300			rs2293370-C	rs2293370	0	2293370	intron	0	NR	3E-9	8.522878745280337		   1.48	[1.29-1.68] 	Affymetrix [421,245]	N
11/29/2012	23000144	Nakamura M	09/18/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/23000144	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cirrhosis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	4q23	4	98875633	NFKB1	BTF3P13 - EIF4E	132556	1977		      134.14	        2.82	rs7665590-G	rs7665590	0	7665590	Intergenic	1	NR	1E-7	7		   1.35	[1.21-1.52] 	Affymetrix [421,245]	N
11/30/2012	23028347	Liu F	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028347	A genome-wide association study identifies five loci influencing facial morphology in Europeans.	Facial morphology	5,388 European ancestry individuals	4,071 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix & Illumina [2,558,979] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	11q23.3	11	120169734	TRIM29	LOC729173			729173			rs2444240-T	rs2444240	0	2444240	intron	0	NR	4E-7	6.397940008672037		    .04	[0.022-0.050] mm decrease	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	14q24.2	14	70177452	SLC8A3	SLC8A3			6547			rs7146198-A	rs7146198	0	7146198	intron	0	NR	4E-6	5.397940008672037		    .05	[0.028-0.068] mm increase	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	7p14.3	7	29881908	WIPF3	WIPF3			644150			rs740145-C	rs740145	0	740145	intron	0	NR	5E-6	5.301029995663981		    .17	[0.10-0.25] mm decrease	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	8q21.11	8	73153944	RPESP	SBSPON - RPL7	157869	6129		       60.67	      136.70	rs2383876-A	rs2383876	0	2383876	Intergenic	1	NR	5E-6	5.301029995663981		    .05	[0.029-0.073] mm decrease	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	15q15.1	15	40030351	EIF2AK4	EIF2AK4			440275			rs2250402-T	rs2250402	0	2250402	intron	0	NR	6E-6	5.221848749616356		    .06	[0.033-0.085] mm increase	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	8q23.3	8	116629371	EIF3H	LINC00536 - EIF3H	100859921	8667		      304.31	       15.45	rs11987235-A	rs11987235	0	11987235	Intergenic	1	NR	7E-6	5.154901959985742		    .04	[0.022-0.055] mm decrease	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	14q32.2	14	99141143	BCL11B	RPL3P4 - BCL11B	326307	64919		      167.84	       28.14	rs2693676-A	rs2693676	0	2693676	Intergenic	1	NR	7E-6	5.154901959985742		    .04	[0.025-0.062] mm decrease	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	21q22.12	21	35316230	Intergenic	RUNX1-IT1 - RPL34P3	80215	54026		      276.80	      155.85	rs2834902-A	rs2834902	0	2834902	Intergenic	1	NR	8E-6	5.096910013008055		    .04	[0.020-0.052] mm increase	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	4q12	4	58438966	Intergenic	SRIP1 - MIR548AG1	6644	100616450		      335.34	     2483.65	rs1869463-A	rs1869463	0	1869463	Intergenic	1	NR	9E-6	5.045757490560675		    .03	[0.019-0.048] mm decrease	Illumina [1,704,858] (imputed)	N
12/06/2012	22969067	Mishra A	09/13/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22969067	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NR	15q12	15	27262626	GABRG3	GABRG3			2567			rs17137734-T	rs17137734	0	17137734	intron	0	NR	9E-6	5.045757490560675		    .09	[0.049-0.129] mm increase	Illumina [1,704,858] (imputed)	N
11/28/2012	23028356	Myouzen K	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028356	Functional variants in NFKBIE and RTKN2 involved in activation of the NF-κB pathway are associated with rheumatoid arthritis in Japanese.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	5,604 Japanese ancestry cases, 31,982 Japanese ancestry controls	6p21.1	6	44265183	NFKBIE	NFKBIE			4794			rs2233434-G	rs2233434	0	2233434	missense	0	0.215	1E-15	15		   1.20	[1.15-1.26] 	Illumina [NR]	N
11/28/2012	23028356	Myouzen K	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028356	Functional variants in NFKBIE and RTKN2 involved in activation of the NF-κB pathway are associated with rheumatoid arthritis in Japanese.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	5,604 Japanese ancestry cases, 31,982 Japanese ancestry controls	10q21.2	10	62198353	RTKN2	RTKN2			219790			rs3125734-T	rs3125734	0	3125734	missense	0	0.108	5E-9	8.301029995663981		   1.20	[1.13-1.27] 	Illumina [NR]	N
11/30/2012	22976474	Siddiq A	09/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22976474	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	20q11.22	20	34000289	RALY, EIF2S2, ASIP	RALY			22913			rs2284378-T	rs2284378	0	2284378	intron	0	0.31	1E-8	8		   1.16	[1.10-1.22] 	Illumina [2,608,509] (imputed)	N
11/30/2012	22976474	Siddiq A	09/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22976474	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	6q14.1	6	81483392	FAM46A, C6orf37	RPL17P25 - FAM46A	442232	55603		     1108.79	      262.34	rs17530068-C	rs17530068	0	17530068	Intergenic	1	0.24	3E-7	6.522878745280337		   1.16	[1.10-1.23] 	Illumina [2,608,509] (imputed)	N
11/30/2012	22976474	Siddiq A	09/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22976474	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	19p13.11	19	17282085	NR	ANKLE1			126549			rs8100241-G	rs8100241	0	8100241	missense	0	NR	4E-8	7.397940008672037		   1.14	[NR] 	Illumina [2,608,509] (imputed)	N
11/30/2012	22976474	Siddiq A	09/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22976474	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	6q25.1	6	151666222	NR	CCDC170 - ESR1	80129	2099		       45.03	       24.27	rs9383938-T	rs9383938	0	9383938	Intergenic	1	NR	2E-10	9.698970004336017		   1.28	[NR] 	Illumina [2,608,509] (imputed)	N
04/09/2013	22982463	Tang WH	09/13/2012	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/22982463	Clinical and genetic association of serum paraoxonase and arylesterase activities with cardiovascular risk.	Paraoxonase activity 	2,136 European ancestry individuals	NR	7q21.3	7	95308945	PON-1	PON1			5444			rs2057681-G	rs2057681	0	2057681	intron	0	0.29	1E-303	302.9999999999999	(Serum Paraoxonases activity)	NR	NR	Affymetrix [2,421,770] (Imputed)	N
04/09/2013	22982463	Tang WH	09/13/2012	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/22982463	Clinical and genetic association of serum paraoxonase and arylesterase activities with cardiovascular risk.	Paraoxonase activity 	2,136 European ancestry individuals	NR	7q21.3	7	95325384	PON-1	PON1			5444			rs854572-C	rs854572	0	854572	nearGene-5	0	0.46	5E-116	115.301029995664	(Serum Arylesterase activity)	NR	NR	Affymetrix [2,421,770] (Imputed)	N
12/10/2012	22981920	Weissflog L	09/13/2012	Eur Neuropsychopharmacol	http://www.ncbi.nlm.nih.gov/pubmed/22981920	KCNIP4 as a candidate gene for personality disorders and adult ADHD.	Personality disorders	200 European ancestry Cluster B personality disorder cases, 200 European ancestry Cluster C cases, 600 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [488,634](pooled)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	1q31.3	1	196651787	CFH, CFHR1, CFHR3	CFH			3075			rs3753394-C	rs3753394	0	3753394	nearGene-5	0	0.43	7E-11	10.15490195998574	(Serum level of C3)	    .05	[0.030-0.070] g/L decrease	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	19p13.3	19	6690760	C3	C3			718			rs3745567-T	rs3745567	0	3745567	intron	0	0.06	2E-9	8.698970004336019	(Serum level of C3)	    .09	[0.070-0.110] g/L increase	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.33	6	30908375	HLA-A	GTF2H4			2968			rs1052693-G	rs1052693	0	1052693	UTR-5	0	0.36	3E-48	47.52287874528033	(Serum level of C4)	    .10	[0.080-0.120] g/L increase	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.33	6	31590014	HLA-C	NCR3			259197			rs11575839-A	rs11575839	0	11575839	cds-synon	0	0.05	1E-54	53.99999999999999	(Serum level of C4)	    .23	[0.21-0.25] g/L decrease	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.33	6	31810752	C4	HSPA1L			3305			rs2075799-T	rs2075799	0	2075799	cds-synon	0	0.20	6E-97	96.22184874961636	(Serum level of C4)	    .17	[0.15-0.19] g/L decrease	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.33	6	32051969	C4	TNXB			7148			rs2857009-G	rs2857009	0	2857009	intron	0	0.20	1E-22	22	(Serum level of C4)	    .08	[0.060-0.100] g/L increase	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.32	6	32197667	HLA-DRA	NOTCH4			4855			rs2071278-G	rs2071278	0	2071278	intron	0	0.27	4E-72	71.39794000867202	(Serum level of C4)	    .13	[0.11-0.15] g/L decrease	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.32	6	32409011	HLA-DRB	BTNL2			56244			rs3763317-C	rs3763317	0	3763317	nearGene-5	0	0.37	9E-66	65.04575749056067	(Serum level of C4)	    .12	[0.10-0.14] g/L increase	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.32	6	32768918	HLA-DQB	TRNAI25			100189401			rs9276606-T	rs9276606	0	9276606		0	0.15	3E-22	21.52287874528033	(Serum level of C4)	    .09	[0.070-0.110] g/L decrease	Illumina [1,940,245] (imputed)	N
12/06/2012	23028341	Yang X	09/13/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/23028341	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry males	1,496 Han Chinese ancestry males	6p21.32	6	32836293	HLA-DQB	TAP2			6891			rs241428-G	rs241428	0	241428	intron	0	0.08	9E-83	82.04575749056067	(Serum level of C4)	    .23	[0.21-0.25] g/L increase	Illumina [1,940,245] (imputed)	N
11/30/2012	22982992	Yang J	09/12/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22982992	FTO genotype is associated with phenotypic variability of body mass index.	Body mass index	133,154 European ancestry individuals	59,325 European ancestry individuals	16q12.2	16	53787703	FTO	FTO			79068			rs7202116-G	rs7202116	0	7202116	intron	0	0.402	2E-10	9.698970004336017	(discovery + validation)	    .04	[0.025-0.047] unit increase	Affymetrix, Illumina, and Perlegen (~2.44 million) [imputed]	N
11/30/2012	22961001	Su Z	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22961001	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	6p22.1	6	29388554	MHC, OR2D12, OR2D13	TRNAI25			100189401			rs9257809-A	rs9257809	0	9257809		0	0.87	4E-9	8.397940008672036		   1.21	[1.13-1.28] 	Illumina [521,744]	N
11/30/2012	22961001	Su Z	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22961001	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	16q24.1	16	86369512	FOXF1, LOC732275	LINC00917 - FENDRR	732275	400550		       23.83	      105.01	rs9936833-C	rs9936833	0	9936833	Intergenic	1	0.37	3E-10	9.522878745280336		   1.14	[1.10-1.19] 	Illumina [521,744]	N
11/30/2012	22961001	Su Z	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22961001	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	3q24	3	146684384	NR	PLSCR5 - RPL21P71	389158	729962		       78.17	      592.34	rs1912785-?	rs1912785	0	1912785	Intergenic	1	NR	8E-6	5.096910013008055	(Circumference)	    .15	[0.091-0.209] unit decrease	Illumina [521,744]	N
11/30/2012	22961001	Su Z	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22961001	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	12p13.1	12	13476447	NR	RNA5SP353 - GRIN2B	100873613	2904		       35.45	       84.30	rs1531228-?	rs1531228	0	1531228	Intergenic	1	NR	9E-6	5.045757490560675	(Circumference)	    .20	[0.10-0.30] unit increase	Illumina [521,744]	N
11/30/2012	22961001	Su Z	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22961001	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	15q25.3	15	86316245	NR	AGBL1;AGBL1-AS1			123624;727915			rs12901001-?	rs12901001	0	12901001	intron;intron	0	NR	6E-6	5.221848749616356	(Circumference)	    .15	[0.091-0.209] unit increase	Illumina [521,744]	N
11/28/2012	22968431	Urban TJ	09/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22968431	Limited contribution of common genetic variants to risk for liver injury due to a variety of drugs.	Drug-induced liver injury 	783 European ancestry cases, 3,001 European ancestry controls	307 European ancestry cases, 2,587 European ancestry controls	3p25.2	3	12288912	PPARG	PPARG			5468			rs17036170-?	rs17036170	0	17036170	intron	0	NR	2E-8	7.698970004336018	(Diclofenac)	  11.30	[4.9-25.9] 	Illumina [800,769]	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	4q23	4	99307309	ADH1B	ADH1B			125			rs1042026-?	rs1042026	0	1042026	UTR-3	0	0.22	3E-7	6.522878745280337		   1.27	[1.16-1.38] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	4q23	4	99135847	ADH4	ADH4;LOC100507053			127;100507053			rs3805322-?	rs3805322	0	3805322	intron;intron	0	0.51	6E-7	6.221848749616355		   1.23	[1.14-1.33] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	2q35	2	216616548	IGFB2	PSMB3P2 - IGFBP2	130700	3485		        5.49	       16.86	rs9288520-?	rs9288520	0	9288520	Intergenic	1	0.34	4E-11	10.39794000867204		   1.33	[1.22-1.45] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	13q33.2	13	104386796	SLC10A2	ATP6V1G1P7 - RPL7P45	100874514	100271225		      941.23	      427.52	rs17450420-?	rs17450420	0	17450420	Intergenic	1	0.04	5E-8	7.30102999566398		   1.70	[1.41-2.06] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	16q12.1	16	50069823	HEATR3	HEATR3			55027			rs4785204-T	rs4785204	0	4785204	intron	0	0.26	2E-20	19.69897000433602		   1.24	[1.18-1.29] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	17q21.2	17	41741012	HAP1	HAP1 - JUP	9001	3728		        6.37	       13.60	rs6503659-A	rs6503659	0	6503659	Intergenic	1	0.13	3E-16	15.52287874528034		   1.27	[1.20-1.34] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	22q12.1	22	28796682	XBP1	XBP1			7494			rs2239815-T	rs2239815	0	2239815	intron	0	0.37	4E-15	14.39794000867204		   1.18	[1.13-1.23] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	3q27.3	3	187075454	ST6GAL1	ST6GAL1			6480			rs2239612-T	rs2239612	0	2239612	intron	0	0.19	6E-14	13.22184874961636		   1.21	[1.15-1.27] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	17p13.3	17	2268343	SMG6	SMG6			23293			rs17761864-A	rs17761864	0	17761864	intron	0	0.14	2E-11	10.69897000433602		   1.21	[1.14-1.28] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	18p11.21	18	12821594	PTPN2	PTPN2			5771			rs2847281-C	rs2847281	0	2847281	intron	0	0.16	2E-11	10.69897000433602		   1.20	[1.14-1.26] 	NR	N
12/11/2012	22960999	Wu C	09/09/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22960999	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	22q12.1	22	28719078	CHEK2	CHEK2			11200			rs4822983-T	rs4822983	0	4822983	intron	0	0.20	2E-22	21.69897000433602		   1.27	[1.21-1.34] 	NR	N
01/15/2013	23225573	Buck D	09/08/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23225573	Genetic variants in the immunoglobulin heavy chain locus are associated with the IgG index in multiple sclerosis.	IgG levels	229 European ancestry multiple sclerosis cases	409 European ancestry multiple sclerosis cases	14q32.33	14	105766248	IGHG3, IGHG1, IGHG2	IGH			3492			rs10136766-A	rs10136766	0	10136766		0	0.27	8E-16	15.09691001300805		    .23	[NR] unit increase	Illumina [526,014]	N
11/06/2012	22951594	Elgazzar S	09/06/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22951594	A genome-wide association study identifies a genetic variant in the SIAH2 locus associated with hormonal receptor-positive breast cancer in Japanese.	Breast cancer	1,086 Japanese ancestry cases, 1,816 Japanese ancestry controls	1,653 Japanese ancestry cases, 2,797 Japanese ancestry controls	3q25.1	3	150750021	SIAH2	SIAH2			6478			rs6788895-G	rs6788895	0	6788895	intron	0	0.65	9E-8	7.045757490560674		   1.22	[1.13-1.31] 	Illumina [453,627]	N
11/06/2012	22951594	Elgazzar S	09/06/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22951594	A genome-wide association study identifies a genetic variant in the SIAH2 locus associated with hormonal receptor-positive breast cancer in Japanese.	Breast cancer	1,086 Japanese ancestry cases, 1,816 Japanese ancestry controls	1,653 Japanese ancestry cases, 2,797 Japanese ancestry controls	10q26.13	10	121573063	FGFR2	FGFR2			2263			rs3750817-T	rs3750817	0	3750817	intron	0	0.49	8E-8	7.096910013008055		   1.22	[NR] 	Illumina [453,627]	N
11/13/2012	22961961	Foroud T	09/06/2012	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/22961961	Genome-wide association study of intracranial aneurysms confirms role of Anril and SOX17 in disease risk.	Intracranial aneurysm	1,483 European ancestry cases, 1,683 European ancestry controls	NR	9p21.3	9	22081851	CDKN2B-AS1	CDKN2B-AS1			100048912			rs6475606-T	rs6475606	0	6475606	intron	0	0.48	4E-8	7.397940008672037		   1.35	[NR] 	Axiom & Affymetrix [451,088]	N
11/04/2012	22951595	Hwang JY	09/06/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22951595	Genome-wide association study identifies GYS2 as a novel genetic factor for polycystic ovary syndrome through obesity-related condition.	Polycystic ovary syndrome	774 Korean ancestry cases, 967 Korean ancestry controls	482 Korean ancestry children, 468 Korean ancestry pregnant females, 1,242 Korean ancestry female controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~3,091,653] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	10q26.11	10	119389891	GRK5	GRK5			2869			rs10886471-C	rs10886471	0	10886471	intron	0	0.778	7E-9	8.154901959985743		   1.12	[1.08-1.16] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	15q14	15	38530704	RASGRP1	RASGRP1			10125			rs7403531-T	rs7403531	0	7403531	intron	0	0.346	4E-9	8.397940008672036		   1.10	[1.06-1.13] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	9p24.2	9	4293150	GLIS3	GLIS3			169792			rs10814916-C	rs10814916	0	10814916	intron	0	0.439	6E-12	11.22184874961635		   1.11	[1.08-1.15] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	9p21.3	9	22132077	CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      119.54	      314.76	rs2383208-A	rs2383208	0	2383208	Intergenic	1	0.558	3E-17	16.52287874528034		   1.22	[1.17-1.28] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	10p13	10	12265895	CDC123	CDC123 - CAMK1D	8872	57118		       15.31	       83.62	rs11257655-T	rs11257655	0	11257655	Intergenic	1	0.564	7E-9	8.154901959985743		   1.15	[1.10-1.20] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	17q12	17	37738049	HNF1B	HNF1B			6928			rs4430796-G	rs4430796	0	4430796	intron	0	0.276	2E-11	10.69897000433602		   1.19	[1.13-1.25] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	Xq28	23	153597180	FAM58A	FAM58A			92002			rs12010175-G	rs12010175	0	12010175	intron	0	0.786	2E-9	8.698970004336019		   1.21	[1.14-1.28] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	Xq28	23	153634467	DUSP9	KRT18P48 - DUSP9	340598	1852		       29.32	        7.98	rs5945326-A	rs5945326	0	5945326	Intergenic	1	0.606	7E-16	15.15490195998574		   1.18	[1.13-1.23] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	6p22.3	6	20661019	CDKAL1	CDKAL1			54901			rs7754840-C	rs7754840	0	7754840	intron	0	0.411	7E-10	9.154901959985741		   1.35	[1.23-1.48] 	Illumina [2,234,194] (imputed)	N
11/15/2012	22961080	Li H	09/06/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22961080	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Singaporean Malay ancestry cases, 1,240 Singaporean Malay ancestry controls, 159 South Asian ancestry cases, 1,624 South Asian ancestry controls	11p15.4	11	2818521	KCNQ1	KCNQ1			3784			rs2237892-C	rs2237892	0	2237892	intron	0	0.657	1E-7	7		   1.32	[1.19-1.46] 	Illumina [2,234,194] (imputed)	N
11/13/2012	22956598	Peters MJ	09/06/2012	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/22956598	Genome-wide association study meta-analysis of chronic widespread pain: evidence for involvement of the 5p15.2 region.	Pain	1,308 European ancestry female cases, 5,791 European ancestry female controls	1,480 European ancestry female cases, 7,989 European ancestry female controls	5p15.2	5	10169711	CCT5, FAM173B	TAS2R1 - FAM173B	50834	134145		      539.36	       55.80	rs13361160-C	rs13361160	0	13361160	Intergenic	1	0.435	5E-7	6.30102999566398		   1.17	[1.10-1.24] 	Illumina [2,224,068](imputed)	N
11/04/2012	22951725	Tang XF	09/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22951725	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	12q13.2	12	56007301	PMEL, DGKA, CDK2, RAB5B, SUOX, ZNFN1A4, RPS26, ERBB3, PA2G4	IKZF4			64375			rs10876864-G	rs10876864	0	10876864	nearGene-5	0	0.24	8E-12	11.09691001300806		   1.18	[1.13-1.24] 	Illumina [493,909]	N
11/04/2012	22951725	Tang XF	09/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22951725	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	11q23.3	11	118827828	CXCR5, DDX6, PHLDB1, TREH, AK021715, 	DDX6 - SETP16	1656	649925		       36.57	        5.97	rs638893-C	rs638893	0	638893	Intergenic	1	0.11	2E-9	8.698970004336019		   1.22	[1.14-1.30] 	Illumina [493,909]	N
11/04/2012	22951725	Tang XF	09/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22951725	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	10q22.1	10	71376162	SLC29A3, CDH23, UNC5B	SLC29A3 - CDH23	55315	64072		       12.77	       20.77	rs1417210-?	rs1417210	0	1417210	Intergenic	1	0.31	2E-8	7.698970004336018		   1.14	[1.09-1.19] 	Illumina [493,909]	N
11/04/2012	22951725	Tang XF	09/06/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22951725	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	3q28	3	188369840	LPP	LPP			4026			rs9851967-?	rs9851967	0	9851967	intron	0	0.28	9E-8	7.045757490560674		   1.14	[1.09-1.19] 	Illumina [493,909]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	2q35	2	218680586	STK36, TTLL4, ZNF142	STK36			27148			rs2303565-C	rs2303565	0	2303565	intron	0	0.43	6E-7	6.221848749616355	(Meta)	   1.17	[1.1-1.24] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	2q35	2	218414374	Intergenic	MIR26B - VIL1	407017	7429		       11.65	        4.74	rs7607369-A	rs7607369	0	7607369	Intergenic	1	0.42	7E-6	5.154901959985742	(Meta)	   1.15	[1.08-1.24] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	3q22.1	3	131994722	CPNE4	CPNE4			131034			rs1320900-?	rs1320900	0	1320900	intron	0	0.34	7E-6	5.154901959985742	(Joint)	   1.19	[1.09-1.3] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	4q35.2	4	189202164	Intergenic	HSPA8P12 - HSP90AA4P	100420038	3323		      487.14	      270.74	rs7665939-?	rs7665939	0	7665939	Intergenic	1	0.11	9E-6	5.045757490560675	(Meta)	   1.23	[1.11-1.39] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	6q16.1	6	92659937	Intergenic	RPL5P19 - ATF1P1	100270906	100128159		      645.30	      227.33	rs6918777-?	rs6918777	0	6918777	Intergenic	1	0.45	7E-6	5.154901959985742	(Meta)	   1.15	[1.08-1.22] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	8q24.3	8	142040310	Intergenic	MIR1302-7 - MIR4472-1	100302147	100616268		      254.00	      136.03	rs4917300-T	rs4917300	0	4917300	Intergenic	1	0.46	2E-6	5.698970004336018	(Joint)	   1.27	[1.14-1.42] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	9p21.2	9	27543283	C9orf72	IFNK - C9orf72	56832	203228		       16.79	        3.26	rs3849942-A	rs3849942	0	3849942	Intergenic	1	0.23	4E-7	6.397940008672037	(Joint)	   1.21	[1.11-1.33] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	11q24.2	11	127211696	Intergenic	KIRREL3-AS3 - ETS1	283165	2113		      205.64	     1247.07	rs4529888-?	rs4529888	0	4529888	Intergenic	1	0.43	5E-6	5.301029995663981	(Joint)	   1.14	[1.06-1.22] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	13q14.11	13	44234038	Intergenic	MIR8079 - SERP2	102465876	387923		       37.84	      139.80	rs9533799-A	rs9533799	0	9533799	Intergenic	1	0.36	4E-6	5.397940008672037	(Joint)	   1.17	[1.09-1.24] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	15q23	15	70283799	Intergenic	MIR629 - UACA	693214	55075		      204.33	      370.76	rs1971791-G	rs1971791	0	1971791	Intergenic	1	0.47	1E-6	5.999999999999999	(Joint)	   1.26	[1.14-1.4] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	16q24.1	16	85059142	KIAA0513	KIAA0513			9764			rs8056742-C	rs8056742	0	8056742	intron	0	0.11	5E-7	6.30102999566398	(Joint)	   1.27	[1.14-1.41] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	17p11.2	17	16342702	CENPV, PIGL	CENPV;LOC102724483			201161;102724483			rs7477-T	rs7477	0	7477	UTR-3;nearGene-5	0	0.48	3E-7	6.522878745280337	(Joint)	   1.30	[1.16-1.44] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	17q11.2	17	28274107	Intergenic	PPY2 - KRT18P55	23614	284085		       25.82	        1.88	rs2006933-?	rs2006933	0	2006933	Intergenic	1	0.25	9E-7	6.045757490560675	(Meta)	   1.27	[1.16-1.37] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	18q11.2	18	23785889	LAMA3	LAMA3			3909			rs11082762-A	rs11082762	0	11082762	intron	0	0.36	7E-7	6.154901959985743	(Joint)	   1.16	[1.09-1.24] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NR	19p13.11	19	17641880	UNC13A	UNC13A			23025			rs12608932-C	rs12608932	0	12608932	intron	0	0.34	5E-8	7.30102999566398	(Meta)	   1.37	[1.21-1.56] 	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	1p34.1	1	43853701	ST3GAL3	ST3GAL3			6487			rs3011225-G	rs3011225	0	3011225	intron	0	0.22	7E-8	7.154901959985742	(Joint)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	1q22	1	155957961	ARHGEF2	ARHGEF2			9181			rs2364403-A	rs2364403	0	2364403	intron	0	0.2	1E-6	5.999999999999999	(Meta)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	1p34.2	1	43539609	PTPRF	PTPRF			5792			rs2819332-A	rs2819332	0	2819332	intron	0	0.23	5E-6	5.301029995663981	(Meta)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	1p34.1	1	43664108	JMJD2A	KDM4A			9682			rs669446-T	rs669446	0	669446	intron	0	0.31	5E-6	5.301029995663981	(Meta)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	4p14	4	36077972	ARAP2	ARAP2			116984			rs12651329-C	rs12651329	0	12651329	intron	0	0.39	5E-7	6.30102999566398	(Joint)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	5q23.2	5	127816284	Intergenic	LINC01183			728586			rs1421746-C	rs1421746	0	1421746	intron	0	0.35	8E-6	5.096910013008055	(Joint)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	7q31.1	7	112454688	IFRD1	IFRD1			3475			rs6956741-G	rs6956741	0	6956741	intron	0	0.06	2E-6	5.698970004336018	(Meta)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	8p21.3	8	20130192	Intergenic	RPL30P9 - SLC18A1	100270981	6570		       16.54	       14.66	rs10503672-T	rs10503672	0	10503672	Intergenic	1	0.26	3E-6	5.522878745280337	(Meta)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	9q21.13	9	76050860	PCSK5	PCSK5			5125			rs7047865-G	rs7047865	0	7047865	intron	0	0.41	7E-6	5.154901959985742	(Meta)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	11p14.1	11	29173590	Intergenic	OR2BH1P - HNRNPRP2	403238	100421354		      186.09	      495.30	rs1491818-C	rs1491818	0	1491818	Intergenic	1	0.31	8E-6	5.096910013008055	(Joint)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	12q15	12	70296305	CNOT2	CNOT2			4848			rs2904524-T	rs2904524	0	2904524	intron	0	0.13	5E-6	5.301029995663981	(Joint)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	12q23.1	12	98796594	ANKS1B	ANKS1B			56899			rs2036225-T	rs2036225	0	2036225	intron	0	0.41	8E-6	5.096910013008055	(Meta)	NR	NR	Illumina [254,145]	N
11/20/2012	22959728	Ahmeti KB	09/05/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22959728	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NR	14q31.1	14	79535753	NRXN3	NRXN3			9369			rs7147705-T	rs7147705	0	7147705	intron	0	0.29	6E-6	5.221848749616356	(Meta)	NR	NR	Illumina [254,145]	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	1p34.3	1	34285335	C1orf94	C1orf94 - MIR552	84970	693137		       66.20	      384.26	rs771390-C	rs771390	0	771390	Intergenic	1	0.757	6E-7	6.221848749616355	(All GGE)	   1.22	[1.12-1.32] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	2p16.1	2	57706920	Intergenic	LOC101927235			101927235			rs13026414-C	rs13026414	0	13026414	intron	0	.576	2E-9	8.698970004336019	(All GGE)	   1.23	[1.15-1.32] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	2q24.3	2	166086767	SCN1A	SCN1A;LOC101929680			6323;101929680			rs11890028-T	rs11890028	0	11890028	intron;intron	0	0.688	4E-6	5.397940008672037	(All GGE)	   1.18	[1.09-1.27] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	17q21.32	17	48045642	PNPO, ATAD4, CDK5RAP3, COPZ2, hsa-mir-152, NFE2L1, CBX1, SNX11, SKAP1	LOC102724556			102724556			rs72823592-G	rs72823592	0	72823592	nearGene-3	0	0.753	9E-9	8.045757490560675	(All GGE)	   1.30	[1.20-1.41] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	1q31.1	1	186900940	PLA2G4A	PLA2G4A			5321			rs12720541-T	rs12720541	0	12720541	intron	0	0.264	9E-6	5.045757490560675	(GAE)	   1.21	[1.10-1.35] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	2p16.1	2	57867738	Intergenic	EIF2S2P7 - VRK2	647016	7444		      818.40	       39.91	rs2717068-T	rs2717068	0	2717068	Intergenic	1	0.412	4E-7	6.397940008672037	(GAE)	   1.27	[1.16-1.40] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	2q22.3	2	144602342	ZEB2	ZEB2-AS1 - TEX41	100303491	401014		       81.44	       65.63	rs10496964-C	rs10496964	0	10496964	Intergenic	1	0.844	9E-9	8.045757490560675	(GAE)	   1.47	[1.28-1.67] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	4q31.23	4	149804060	Intergenic	ATP5LP4 - DCLK2	100130396	166614		     1100.23	      274.21	rs10030601-C	rs10030601	0	10030601	Intergenic	1	0.035	1E-6	5.999999999999999	(GAE)	   1.58	[1.29-1.93] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	1q43	1	239806797	CHRM3	CHRM3			1131			rs12059546-G	rs12059546	0	12059546	intron	0	.172	4E-8	7.397940008672037	(JME)	   1.42	[1.26-1.61] 	Affymetrix [4.56 million] (imputed)	N
11/02/2012	22949513	EPICURE Consortium	09/04/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22949513	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32	Epilepsy (generalized)	702 European ancestry GAE cases, 586 European ancestry JME cases, 239 European ancestry other GGE cases, 2,461 European ancestry controls	347 European ancestry GAE parent-child trios, 166 European ancestry JME parent-child trios, 91 European ancestry other GGE parent-child trios, 385 European ancestry GAE cases, 382 European ancestry JME cases, 122 European ancestry other GGE cases, up to 889 European ancestry controls	5q12.3	5	66856430	MAST4	MAST4			375449			rs39861-C	rs39861	0	39861	intron	0	.235	3E-7	6.522878745280337	(JME)	   1.26	[1.13-1.41] 	Affymetrix [4.56 million] (imputed)	N
11/28/2012	22945461	Rahmioglu N	09/04/2012	Eur J Drug Metab Pharmacokinet	http://www.ncbi.nlm.nih.gov/pubmed/22945461	Genome-wide association study reveals a complex genetic architecture underpinning-induced CYP3A4 enzyme activity.	CYP3A4 enzyme activity	310 European ancestry female twin individuals	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
11/02/2012	22941191	Diskin SJ	09/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22941191	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	6q16.3	6	104732910	HACE1	HACE1			57531			rs4336470-C	rs4336470	0	4336470	intron	0	0.65	3E-11	10.52287874528034		   1.26	[1.18-1.35] 	Illumina [426,697]	N
11/02/2012	22941191	Diskin SJ	09/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22941191	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	6q16.3	6	104958399	LIN28B	LIN28B			389421			rs17065417-A	rs17065417	0	17065417	intron	0	0.89	1E-8	8		   1.38	[1.23-1.54] 	Illumina [426,697]	N
11/02/2012	22941191	Diskin SJ	09/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22941191	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	2q35	2	214789163	BARD1	BARD1			580			rs7587476-T	rs7587476	0	7587476	intron	0	0.246	4E-14	13.39794000867204		   1.37	[NR] 	Illumina [426,697]	N
11/02/2012	22941191	Diskin SJ	09/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22941191	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	6p22.3	6	22131700	LINC00340, FLJ44180	CASC15			401237			rs9295536-A	rs9295536	0	9295536	intron	0	0.430	8E-16	15.09691001300805		   1.36	[NR] 	Illumina [426,697]	N
11/02/2012	22941191	Diskin SJ	09/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22941191	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	11p15.4	11	8231306	LMO1	LMO1			4004			rs110419-A	rs110419	0	110419	intron	0	0.489	1E-13	13		   1.32	[NR] 	Illumina [426,697]	N
11/02/2012	22941191	Diskin SJ	09/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22941191	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	11p11.2	11	43706780	HSD17B12	HSD17B12			51144			rs11037575-C	rs11037575	0	11037575	intron	0	0.407	5E-8	7.30102999566398		   1.23	[NR] 	Illumina [426,697]	N
11/02/2012	22941190	Holliday EG	09/02/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22941190	Common variants at 6p21.1 are associated with large artery atherosclerotic stroke.	Stroke (ischemic)	421 European ancestry large artery atherosclerosis cases, 741 European ancestry ischemic stroke cases, 1,244 European ancestry controls	1,715 European ancestry large artery atherosclerosis cases, 9,552 European ancestry ischemic stroke cases, 52,695 European ancestry controls	6p21.1	6	44626422	CDC5L, SUPT3H	TRNAI25			100189401			rs556621-A	rs556621	0	556621		0	0.30	5E-8	7.30102999566398	(LAA)	   1.21	[1.13-1.30] 	Illumina [551,514]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	1q24.2	1	167749262	MPZL1	MPZL1			9019			rs4145462-T	rs4145462	0	4145462	intron	0	0.05	1E-6	5.999999999999999		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	2p24.1	2	23016071	Intergenic	RNA5SP87 - KLHL29	100873320	114818		      677.07	      369.36	rs41458646-G	rs41458646	0	41458646	Intergenic	1	0.17	8E-6	5.096910013008055		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	2q33.3	2	204263298	Intergenic	ICOS - DSTNP5	29851	100132132		      301.72	       43.54	rs6738181-A	rs6738181	0	6738181	Intergenic	1	0.19	5E-6	5.301029995663981		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	3p14.1	3	69124224	Intergenic	LMOD3			56203			rs7638995-A	rs7638995	0	7638995	nearGene-5	0	0.11	2E-6	5.698970004336018		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	7q22.3	7	105640741	ATXN7L1	ATXN7L1			222255			rs11983798-T	rs11983798	0	11983798	intron	0	0.08	1E-6	5.999999999999999		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	8q22.3	8	102963761	Intergenic	LOC100996457			100996457			rs6468852-G	rs6468852	0	6468852	intron	0	0.13	1E-6	5.999999999999999		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	9q31.2	9	105869669	Intergenic	SLC25A6P5 - MIR8081	100129319	102465995		       19.08	      731.26	rs9969729-A	rs9969729	0	9969729	Intergenic	1	0.08	2E-6	5.698970004336018		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	11p14.3	11	24589584	LUZP2	LUZP2			338645			rs12361953-C	rs12361953	0	12361953	intron	0	0.15	8E-7	6.096910013008056		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	11q24.2	11	126035363	CDON	CDON			50937			rs472926-C	rs472926	0	472926	intron	0	0.15	3E-6	5.522878745280337		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	11q24.3	11	128319206	Intergenic	KIRREL3-AS3 - ETS1	283165	2113		     1313.15	      139.56	rs4937314-C	rs4937314	0	4937314	Intergenic	1	0.17	7E-6	5.154901959985742		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	14q24.2	14	71040884	PCNX	PCNX			22990			rs11848070-C	rs11848070	0	11848070	intron	0	0.25	6E-6	5.221848749616356		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	20p12.3	20	6999988	Intergenic	BMP2 - MIR8062	650	102465865		      219.73	      371.62	rs6085820-A	rs6085820	0	6085820	Intergenic	1	0.09	9E-6	5.045757490560675		NR	NR	Affymetrix [614,963]	N
11/19/2012	22881374	Cummings AC	09/01/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22881374	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NR	14q24.2	14	71199580	Intergenic	PTTG4P - SNORD56B	326315	319139		      113.70	      198.76	rs17767225-T	rs17767225	0	17767225	Intergenic	1	0.2	8E-6	5.096910013008055		NR	NR	Affymetrix [614,963]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	1q44	1	244227262	Intergenic	ZBTB18 - C1orf100	10472	200159		      169.79	      125.37	rs10429924-?	rs10429924	0	10429924	Intergenic	1	NR	1E-6	5.999999999999999	(EA)	   1.61	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	10p12.31	10	21278636	Intergenic	NEBL-AS1 - RNU6-15P	100128511	100302741		      103.71	       43.33	rs3847375-?	rs3847375	0	3847375	Intergenic	1	NR	1E-6	5.999999999999999	(EA)	   1.46	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	6p25.3	6	475489	EXOC2,9648	IRF4 - EXOC2	3662	55770		       64.05	        9.65	rs12210050-?	rs12210050	0	12210050	Intergenic	1	NR	3E-6	5.522878745280337	(EA)	   1.20	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	12q21.31	12	81449349	PPFIA2	PPFIA2			8499			rs12426725-?	rs12426725	0	12426725	intron	0	NR	4E-6	5.397940008672037	(EA)	   1.37	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	6p21.31	6	33883396	Intergenic	TRNAI25			100189401			rs16869652-?	rs16869652	0	16869652		0	NR	5E-6	5.301029995663981	(EA)	   1.45	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	2q14.3	2	124225479	CNTNAP5	CNTNAP5			129684			rs1170612-?	rs1170612	0	1170612	intron	0	NR	6E-6	5.221848749616356	(EA)	   1.40	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	4q34.3	4	182216245	Intergenic	TENM3			55714			rs2726807-?	rs2726807	0	2726807	intron	0	NR	6E-6	5.221848749616356	(EA)	   1.29	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	12p11.22	12	29719385	TMTC1	TMTC1			83857			rs16934812-?	rs16934812	0	16934812	intron	0	NR	7E-6	5.154901959985742	(EA)	   1.34	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	18q12.3	18	44510702	Intergenic	LOC101927921			101927921			rs2048485-?	rs2048485	0	2048485	intron	0	NR	8E-6	5.096910013008055	(EA)	   1.40	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	6p25.3	6	475489	EXOC2, 9648	IRF4 - EXOC2	3662	55770		       64.05	        9.65	rs12210050-?	rs12210050	0	12210050	Intergenic	1	NR	4E-6	5.397940008672037	(All)	   1.18	[NR] 	Illumina [up to 531,195]	N
11/28/2012	22885689	Levinson DF	09/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22885689	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 Other ancestry cases, 114 Other ancestry controls	NA	2q14.3	2	124225479	CNTNAP5	CNTNAP5			129684			rs1170612-?	rs1170612	0	1170612	intron	0	NR	9E-6	5.045757490560675	(All)	   1.37	[NR] 	Illumina [up to 531,195]	N
11/05/2012	22960237	Han Y	08/31/2012	Bone	http://www.ncbi.nlm.nih.gov/pubmed/22960237	Bivariate genome-wide association study suggests fatty acid desaturase genes and cadherin DCHS2 for variation of both compressive strength index and appendicular lean mass in males.	Comprehensive strength and appendicular lean mass	825 Chinese ancestry females, 802 Chinese ancestry males	1,059 European ancestry males, 2,227 European ancestry females	11q12.2	11	61803311	FADS1, FADS2	FADS1			3992			rs174547-C	rs174547	0	174547	intron	0	0.33	2E-7	6.698970004336019	(Males + Females)	NR	NR	Affymetrix [701,525]	N
11/05/2012	22960237	Han Y	08/31/2012	Bone	http://www.ncbi.nlm.nih.gov/pubmed/22960237	Bivariate genome-wide association study suggests fatty acid desaturase genes and cadherin DCHS2 for variation of both compressive strength index and appendicular lean mass in males.	Comprehensive strength and appendicular lean mass	825 Chinese ancestry females, 802 Chinese ancestry males	1,059 European ancestry males, 2,227 European ancestry females	11q12.2	11	61803910	FADS1, FADS2	FADS1			3992			rs174549-A	rs174549	0	174549	intron	0	0.30	8E-7	6.096910013008056	(Males)	NR	NR	Affymetrix [701,525]	N
11/13/2012	22935194	Connolly JJ	08/30/2012	Child Dev	http://www.ncbi.nlm.nih.gov/pubmed/22935194	A genome-wide association study of autism incorporating autism diagnostic interview-revised, autism diagnostic observation schedule, and social responsiveness scale.	Autism	Up to 2,165 individuals of European, East Asian, South Asian and African American ancestries	Up to 1,231 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [522,149]	N
11/20/2012	22936702	Hofmann S	08/30/2012	Eur Respir J	http://www.ncbi.nlm.nih.gov/pubmed/22936702	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	6p21.32	6	32396039	BTNL2	BTNL2			56244			rs2076530-?	rs2076530	0	2076530	missense	0	NR	3E-11	10.52287874528034	(Chronic)	NR	NR	Affymetrix [677,619]	N
11/20/2012	22936702	Hofmann S	08/30/2012	Eur Respir J	http://www.ncbi.nlm.nih.gov/pubmed/22936702	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	10q22.3	10	80151969	ANXA11	PLAC9 - ANXA11	219348	311		        6.94	        3.16	rs1953600-?	rs1953600	0	1953600	Intergenic	1	NR	1E-6	5.999999999999999	(Chronic)	NR	NR	Affymetrix [677,619]	N
10/28/2012	22936694	Jin G	08/30/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22936694	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry males	NA	10q21.3	10	63577393	JMJD1C	REEP3			221035			rs10822184-T	rs10822184	0	10822184	intron	0	0.49	1E-8	8	(serum testosterone)	    .06	[0.038-0.078] unit decrease	Illumina [642,461]	N
10/28/2012	22936694	Jin G	08/30/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22936694	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry males	NA	17p13.1	17	7634474	SHBG	SAT2 - ATP1B2	112483	482		        6.60	       16.46	rs727428-T	rs727428	0	727428	Intergenic	1	0.414	1E-12	12	(serum testosterone)	    .07	[0.053-0.093] unit decrease	Illumina [642,461]	N
10/28/2012	22936694	Jin G	08/30/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22936694	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry males	NA	Xp22.31	23	8945785	FAM9B	FAM9A - FAM9B	171482	171483		      144.40	       79.21	rs5934505-G	rs5934505	0	5934505	Intergenic	1	0.278	2E-8	7.698970004336018	(serum testosterone)	    .09	[0.060-0.122] unit increase	Illumina [642,461]	N
10/28/2012	22936694	Jin G	08/30/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22936694	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry males	NA	17p13.1	17	7634474	SHBG	SAT2 - ATP1B2	112483	482		        6.60	       16.46	rs727428-T	rs727428	0	727428	Intergenic	1	0.414	1E-11	11	(DHT levels)	    .10	[0.074-0.132] unit decrease	Illumina [642,461]	N
10/28/2012	22936694	Jin G	08/30/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22936694	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry males	NA	17p13.1	17	7648805	SHBG	SAT2 - ATP1B2	112483	482		       20.93	        2.13	rs72829446-T	rs72829446	0	72829446	Intergenic	1	0.101	9E-10	9.045757490560675	(DHT levels)	    .16	[0.11-0.22] unit increase	Illumina [642,461]	N
10/28/2012	22936694	Jin G	08/30/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22936694	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry males	NA	17p13.1	17	7648805	SHBG	SAT2 - ATP1B2	112483	482		       20.93	        2.13	rs72829446-T	rs72829446	0	72829446	Intergenic	1	0.101	6E-8	7.221848749616355	(serum testosterone)	    .10	[0.064-0.134] unit increase	Illumina [642,461]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	6p21.33	6	31607499	AIF1	TRNAI25			100189401			rs9348876-T	rs9348876	0	9348876		0	0.06	3E-6	5.522878745280337		   1.41	[1.22-1.63] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	7q31.1	7	114717488	FOXP2	MIR3666 - MDFIC	100500896	29969		       64.03	      204.67	rs1869839-?	rs1869839	0	1869839	Intergenic	1	0.64	7E-6	5.154901959985742		   1.20	[1.11-1.3] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	21q22.11	21	33424579	IFNGR2	IFNGR2			3460			rs2834215-?	rs2834215	0	2834215	intron	0	0.58	3E-7	6.522878745280337		   1.22	[1.12-1.32] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	22q13.2	22	41035338	RBX1, EP300	RBX1 - RPS9P2	9978	267009		       62.32	       28.66	rs4820425-A	rs4820425	0	4820425	Intergenic	1	0.24	3E-8	7.522878745280337		   1.27	[1.17-1.38] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	16q12.1	16	50722970	NOD2	NOD2			64127			rs2076756-G	rs2076756	0	2076756	intron	0	NR	3E-10	9.522878745280336		   1.46	[NR] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-G	rs11209026	0	11209026	missense	0	NR	4E-14	13.39794000867204		   2.84	[NR] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	2q37.1	2	233275771	ATG16L1	ATG16L1;SCARNA5			55054;677775			rs3792109-A	rs3792109	0	3792109	intron;ncRNA	0	NR	5E-9	8.301029995663981		   1.38	[NR] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	5p13.1	5	40410482	PTGER4	LINC00603 - PTGER4	102467077	5734		      357.16	      269.45	rs11742570-C	rs11742570	0	11742570	Intergenic	1	NR	1E-6	5.999999999999999		   1.32	[NR] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	10q21.2	10	62685804	ZNF365	ZNF365 - ALDH7A1P4	22891	544		       13.79	       55.19	rs10761659-G	rs10761659	0	10761659	Intergenic	1	NR	5E-6	5.301029995663981		   1.28	[NR] 	Illumina [508,934]	N
11/16/2012	22936669	Julia A	08/30/2012	Gut	http://www.ncbi.nlm.nih.gov/pubmed/22936669	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	9q34.3	9	136372044	CARD9, SNAPC4	CARD9			64170			rs4077515-T	rs4077515	0	4077515	missense	0	NR	4E-6	5.397940008672037		   1.29	[NR] 	Illumina [508,934]	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	9q34.12	9	130872696	ABL1	ABL1			25			rs2070997-?	rs2070997	0	2070997	intron	0	NR	8E-6	5.096910013008055	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	8p21.2	8	26861363	ADRA1A	ADRA1A			148			rs4732957-?	rs4732957	0	4732957	intron	0	NR	7E-6	5.154901959985742	(SF8)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	5q13.3	5	75184463	ANKRD31	ANKRD31			256006			rs4704187-?	rs4704187	0	4704187	intron	0	NR	6E-6	5.221848749616356	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	8q12.1	8	60281611	CA8	CA8			767			rs10957125-?	rs10957125	0	10957125	nearGene-5	0	NR	4E-6	5.397940008672037	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	7q11.23	7	77133634	CCDC146	CCDC146			57639			rs12540771-?	rs12540771	0	12540771		0	NR	5E-6	5.301029995663981	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	16q23.3	16	83678830	CDH13	CDH13			1012			rs3784943-?	rs3784943	0	3784943	intron	0	NR	5E-8	7.30102999566398	(SF1)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	9p22.2	9	17458874	CNTLN	CNTLN			54875			rs10810790-?	rs10810790	0	10810790	intron	0	NR	6E-6	5.221848749616356	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	16q23.1	16	76284645	CNTNAP4	CNTNAP4			85445			rs7193230-?	rs7193230	0	7193230	intron	0	NR	5E-6	5.301029995663981	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	1p35.1	1	33708220	CSMD2	CSMD2			114784			rs564148-?	rs564148	0	564148	intron	0	NR	9E-6	5.045757490560675	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	4q22.1	4	91082746	FAM190A	CCSER1			401145			rs6532271-?	rs6532271	0	6532271	intron	0	NR	3E-6	5.522878745280337	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	13q32.2	13	98179341	FARP1	FARP1			10160			rs9556893-?	rs9556893	0	9556893	intron	0	NR	6E-6	5.221848749616356	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	5q21.3	5	108065750	FBXL17	FBXL17			64839			rs11242661-?	rs11242661	0	11242661	intron	0	NR	1E-6	5.999999999999999	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3p14.2	3	60522607	FHIT	FHIT			2272			rs80171647-?	rs80171647	0	80171647	intron	0	NR	2E-6	5.698970004336018	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3q13.32	3	119027089	IGSF11	IGSF11			152404			rs2160050-?	rs2160050	0	2160050	intron	0	NR	9E-6	5.045757490560675	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	4p13	4	44210148	KCTD8	KCTD8			386617			rs17641529-?	rs17641529	0	17641529	intron	0	NR	9E-6	5.045757490560675	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	13q21.33	13	69855961	KLHL1	KLHL1			57626			rs2325244-?	rs2325244	0	2325244	intron	0	NR	8E-7	6.096910013008056	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	17p12	17	12144227	MAP2K4	MAP2K4			6416			rs1870584-?	rs1870584	0	1870584	nearGene-3	0	NR	5E-6	5.301029995663981	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2q12.1	2	102718982	MFSD9	MFSD9			84804			rs33993717-?	rs33993717	0	33993717	missense	0	NR	5E-6	5.301029995663981	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	18q21.31	18	58143501	NEDD4L	NEDD4L			23327			rs549476-?	rs549476	0	549476	intron	0	NR	3E-6	5.522878745280337	(SF5)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	11p15.1	11	20962659	NELL1	NELL1			4745			rs61883261-?	rs61883261	0	61883261	intron	0	NR	9E-6	5.045757490560675	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	4q35.1	4	182766636	ODZ3	TENM3			55714			rs10017238-?	rs10017238	0	10017238	intron	0	NR	7E-6	5.154901959985742	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	1p36.13	1	18705778	PAX7	PAX7			5081			rs2236824-?	rs2236824	0	2236824	intron	0	NR	2E-6	5.698970004336018	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	12p13.1	12	14507250	PLBD1	PLBD1			79887			rs3827886-?	rs3827886	0	3827886	intron	0	NR	7E-6	5.154901959985742	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	10q26.2	10	127939367	PTPRE	PTPRE			5791			rs12049671-?	rs12049671	0	12049671	intron	0	NR	7E-6	5.154901959985742	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	7q36.3	7	158344294	PTPRN2	PTPRN2			5799			rs4909189-?	rs4909189	0	4909189	intron	0	NR	3E-6	5.522878745280337	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	10q11.23	10	50359537	SGMS1	SGMS1			259230			rs2574975-?	rs2574975	0	2574975	intron	0	NR	5E-6	5.301029995663981	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	5p15.31	5	6635478	SRD5A1	SRD5A1			6715			rs472402-?	rs472402	0	472402	intron	0	NR	3E-7	6.522878745280337	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2p21	2	43411699	THADA	THADA			63892			rs13429458-?	rs13429458	0	13429458	intron	0	NR	6E-6	5.221848749616356	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	7p21.3	7	12233526	TMEM106B	TMEM106B			54664			rs14978-?	rs14978	0	14978	UTR-3	0	NR	7E-6	5.154901959985742	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	8q24.3	8	140140070	TRAPPC9	TRAPPC9			83696			rs6992848-?	rs6992848	0	6992848	intron	0	NR	7E-6	5.154901959985742	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	16q23.1	16	79039524	WWOX	WWOX			51741			rs17713676-?	rs17713676	0	17713676	intron	0	NR	8E-6	5.096910013008055	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	1p36.13	1	19060091	Intergenic	IFFO2 - UBR4	126917	23352		      103.76	       14.42	rs12123383-?	rs12123383	0	12123383	Intergenic	1	NR	4E-6	5.397940008672037	(SF1)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	1p33	1	47544325	Intergenic	RPL21P24 - ATP6V0E1P4	100270880	100874504		       45.94	        5.87	rs11582540-?	rs11582540	0	11582540	Intergenic	1	NR	3E-6	5.522878745280337	(SF5)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	1q32.2	1	209160872	Intergenic	RPS26P13 - TFDP1P	100271106	391158		      463.17	       71.24	rs4382726-?	rs4382726	0	4382726	Intergenic	1	NR	4E-6	5.397940008672037	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2p24.2	2	17807391	Intergenic	GEN1 - MSGN1	348654	343930		       22.03	        9.13	rs214034-?	rs214034	0	214034	Intergenic	1	NR	7E-6	5.154901959985742	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2p22.3	2	34868226	Intergenic	SLC25A5P2 - MIR548AD	344371	100616475		     1027.48	      603.18	rs7600259-?	rs7600259	0	7600259	Intergenic	1	NR	1E-6	5.999999999999999	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2p12	2	76532449	Intergenic	SUCLA2P2 - LRRTM4	100129863	80059		      425.25	      215.27	rs74529274-?	rs74529274	0	74529274	Intergenic	1	NR	9E-6	5.045757490560675	(SF8)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2q13	2	112933827	Intergenic	IL37 - IL36G	27178	56300		       14.95	       44.19	rs12467847-?	rs12467847	0	12467847	Intergenic	1	NR	5E-6	5.301029995663981	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2q24.3	2	166085630	Intergenic	SCN1A;LOC101929680			6323;101929680			rs11904006-?	rs11904006	0	11904006	intron;intron	0	NR	6E-6	5.221848749616356	(SF1)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2q33.1	2	201994894	Intergenic	CDK15 - FZD7	65061	8324		       99.34	       39.69	rs6754521-?	rs6754521	0	6754521	Intergenic	1	NR	5E-6	5.301029995663981	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	2q37.3	2	239904221	Intergenic	LOC101927147			101927147			rs12618573-?	rs12618573	0	12618573	intron	0	NR	8E-6	5.096910013008055	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3p26.3	3	1700081	Intergenic	RPL23AP38 - RPL23AP39	391504	100271461		      103.84	       29.97	rs73001827-?	rs73001827	0	73001827	Intergenic	1	NR	1E-6	5.999999999999999	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3p26.2	3	3608555	Intergenic	CRBN - SUMF1	51185	285362		      428.84	      173.95	rs9837561-?	rs9837561	0	9837561	Intergenic	1	NR	3E-6	5.522878745280337	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3p14.1	3	67323553	Intergenic	MIR4272 - SUCLG2	100422941	8801		       98.03	       36.91	rs977102-?	rs977102	0	977102	Intergenic	1	NR	2E-6	5.698970004336018	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3q12.3	3	101693134	Intergenic	RPL24 - PDCL3P4	6152	285359		        6.42	       19.30	rs112553552-?	rs112553552	0	112553552	Intergenic	1	NR	3E-6	5.522878745280337	(SF8)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3q22.1	3	130252258	Intergenic	COL6A4P2			646300			rs9813712-?	rs9813712	0	9813712	intron	0	NR	2E-6	5.698970004336018	(SF1)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3q26.1	3	165407371	Intergenic	SLITRK3 - BCHE	22865	590		      210.69	      365.53	rs9878522-?	rs9878522	0	9878522	Intergenic	1	NR	6E-6	5.221848749616356	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	3q26.32	3	176704864	Intergenic	LINC01208 - LINC01209	100505547	101928684		       69.33	      109.29	rs1490075-?	rs1490075	0	1490075	Intergenic	1	NR	2E-6	5.698970004336018	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	4p16.2	4	4702287	Intergenic	STX18-AS1			100507266			rs4476553-?	rs4476553	0	4476553	intron	0	NR	3E-6	5.522878745280337	(SF5)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	4q12	4	54375414	Intergenic	PDGFRA - KIT	5156	3815		       77.17	      282.51	rs9312648-?	rs9312648	0	9312648	Intergenic	1	NR	6E-6	5.221848749616356	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	4q32.2	4	161252328	Intergenic	RPS14P7 - FSTL5	100271065	56884		      433.47	      131.56	rs7676384-?	rs7676384	0	7676384	Intergenic	1	NR	8E-6	5.096910013008055	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	4q34.1	4	173594531	Intergenic	HAND2-AS1 - MORF4	79804	10934		       52.70	       21.41	rs12646107-?	rs12646107	0	12646107	Intergenic	1	NR	4E-6	5.397940008672037	(SF8)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	NR			Intergenic	 - 						rs74347767-?	rs74347767					NR	7E-7		(SF1)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	5q23.1	5	119020720	Intergenic	PTMAP2 - DMXL1	5759	1657		       45.90	       50.39	rs111649495-?	rs111649495	0	111649495	Intergenic	1	NR	2E-6	5.698970004336018	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	5q23.3	5	130456441	Intergenic	RNU7-53P - ARL2BPP4	100151649	100130265		       69.76	       72.96	rs6894216-?	rs6894216	0	6894216	Intergenic	1	NR	4E-6	5.397940008672037	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	5q33.1	5	153125369	Intergenic	TRNAC32P - GRIA1	100189508	2890		      516.16	      365.16	rs1438949-?	rs1438949	0	1438949	Intergenic	1	NR	6E-6	5.221848749616356	(SF8)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	6q12	6	67471804	Intergenic	RNA5SP208 - BAI3	100873468	577		        4.50	     1163.51	rs4710654-?	rs4710654	0	4710654	Intergenic	1	NR	8E-7	6.096910013008056	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	6q16.1	6	98489270	Intergenic	EIF4EBP2P3 - POU3F2	100190924	5454		      309.43	      345.43	rs2213553-?	rs2213553	0	2213553	Intergenic	1	NR	5E-6	5.301029995663981	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	6q12	6	67617137	Intergenic	RNA5SP208 - BAI3	100873468	577		      149.83	     1018.18	rs875033-?	rs875033	0	875033	Intergenic	1	NR	8E-6	5.096910013008055	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	7p12.3	7	48778369	Intergenic	ABCA13 - CDC14BL	154664	100101112		      130.87	       68.03	rs11767191-?	rs11767191	0	11767191	Intergenic	1	NR	1E-6	5.999999999999999	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	8p11.1	8	43840091	Intergenic	SNX18P27 - ASNSP1	100873788	389652		      325.67	     2739.12	rs58810682-?	rs58810682	0	58810682	Intergenic	1	NR	8E-6	5.096910013008055	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	8q12.1	8	60433638	Intergenic	PDCL3P1 - RAB2A	392225	5862		       45.45	       83.27	rs9650199-?	rs9650199	0	9650199	Intergenic	1	NR	6E-6	5.221848749616356	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	8q22.1	8	93903875	Intergenic	TMEM67 - MIR378D2	91147	100616169		       84.64	       12.15	rs35820208-?	rs35820208	0	35820208	Intergenic	1	NR	3E-6	5.522878745280337	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	9p23	9	11257448	Intergenic	AKAP8P1 - JKAMPP1	646114	100049717		      244.35	     1029.88	rs10959672-?	rs10959672	0	10959672	Intergenic	1	NR	5E-7	6.30102999566398	(SF1)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	9p21.3	9	22842203	Intergenic	CLIC4P1 - SUMO2P2	646609	100859924		       93.97	      789.90	rs12554707-?	rs12554707	0	12554707	Intergenic	1	NR	2E-6	5.698970004336018	(SF5)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	9q21.2	9	76995712	Intergenic	PCA3 - FOXB2	50652	442425		      208.16	       23.94	rs79460104-?	rs79460104	0	79460104	Intergenic	1	NR	4E-6	5.397940008672037	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	9q34.13	9	131574686	Intergenic	UCK1 - RAPGEF1	83549	2889		       43.41	        2.08	rs11243437-?	rs11243437	0	11243437	Intergenic	1	NR	7E-6	5.154901959985742	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	10q23.33	10	95092933	Intergenic	CYP2C8 - PAWRP1	1558	100420526		       23.44	       90.72	rs72820627-?	rs72820627	0	72820627	Intergenic	1	NR	7E-6	5.154901959985742	(SF8)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	12p12.2	12	19911034	Intergenic	RPL34P25 - TCP1P3	100271501	400013		      401.79	       30.17	rs10841397-?	rs10841397	0	10841397	Intergenic	1	NR	9E-6	5.045757490560675	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	12q13.2	12	55676884	Intergenic	PSMB3P - METTL7B	121131	196410		       21.65	        4.66	rs55874825-?	rs55874825	0	55874825	Intergenic	1	NR	3E-7	6.522878745280337	(SF5)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	12q24.32	12	127819873	Intergenic	HSPE1P20 - FLJ37505	100288726	400087		      907.55	       61.74	rs11059374-?	rs11059374	0	11059374	Intergenic	1	NR	2E-6	5.698970004336018	(SF5)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	12q24.33	12	130868017	Intergenic	STX2 - RAN	2054	5901		       28.74	        4.06	rs7304057-?	rs7304057	0	7304057	Intergenic	1	NR	4E-6	5.397940008672037	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	13q33.1	13	103439195	Intergenic	SLC10A2 - ATP6V1G1P7	6555	100874514		      372.35	        4.83	rs583464-?	rs583464	0	583464	Intergenic	1	NR	3E-6	5.522878745280337	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	15q14	15	37157418	Intergenic	MIR8063 - RPS15P8	102466875	390576		      184.52	      333.26	rs17439560-?	rs17439560	0	17439560	Intergenic	1	NR	4E-6	5.397940008672037	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	15q22.2	15	61410580	Intergenic	RNA5SP397 - VPS13C	100873650	54832		      673.69	      441.81	rs3884558-?	rs3884558	0	3884558	Intergenic	1	NR	5E-6	5.301029995663981	(SF10)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	15q26.2	15	96475503	Intergenic	RPL31P55 - FAM149B1P1	100128250	388181		       26.97	      281.48	rs113154706-?	rs113154706	0	113154706	Intergenic	1	NR	7E-6	5.154901959985742	(SF5)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	16p11.2	16	32469603	Intergenic	PABPC1P13 - ABCD1P3	644758	26982		       27.83	        5.42	rs13380637-?	rs13380637	0	13380637	Intergenic	1	NR	5E-6	5.301029995663981	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	NR			Intergenic	 - 						16-78042454-?	16-78042454					NR	4E-7		(SF1)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	17q11.1	17	26993863	Intergenic	TRNAS30P - PDLIM1P3	100189512	100419427		     4464.94	        8.79	rs73317122-?	rs73317122	0	73317122	Intergenic	1	NR	4E-6	5.397940008672037	(SF8)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	17q21.31	17	46257341	Intergenic	LRRC37A			9884			rs2458179-?	rs2458179	0	2458179		0	NR	7E-6	5.154901959985742	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	17q22	17	57042633	Intergenic	SCPEP1 - RNF126P1	59342	376412		       35.87	        2.85	rs8073390-?	rs8073390	0	8073390	Intergenic	1	NR	7E-6	5.154901959985742	(SF3)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	18q12.1	18	28193052	Intergenic	CDH2 - ARIH2P1	1000	390844		       15.57	      458.48	rs4800843-?	rs4800843	0	4800843	Intergenic	1	NR	3E-6	5.522878745280337	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	18q12.2	18	37618333	Intergenic	CELF4 - MIR4318	56853	100422857		       52.30	       38.80	rs10502675-?	rs10502675	0	10502675	Intergenic	1	NR	3E-6	5.522878745280337	(SF9)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	18q23	18	75815681	Intergenic	SMIM21 - ZNF516	284274	9658		      388.05	      542.00	rs1017745-?	rs1017745	0	1017745	Intergenic	1	NR	6E-6	5.221848749616356	(SF6)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	18q23	18	78655450	Intergenic	LINC01029 - SALL3	101927715	27164		      661.72	      324.83	rs66591657-?	rs66591657	0	66591657	Intergenic	1	NR	4E-6	5.397940008672037	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	20p12.3	20	7314256	Intergenic	BMP2 - MIR8062	650	102465865		      533.99	       57.35	rs6054906-?	rs6054906	0	6054906	Intergenic	1	NR	3E-6	5.522878745280337	(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	20q13.12	20	43858564	Intergenic	GTSF1L - TOX2	149699	84969		      131.56	       56.29	rs6103489-?	rs6103489	0	6103489	Intergenic	1	NR	4E-6	5.397940008672037	(SF7)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	NR			Intergenic	 - 						rs932425-?	rs932425					NR	5E-6		(SF4)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/05/2012	22952603	Hart AB	08/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22952603	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 6 other ancestry individuals, 4 individuals	NA	20q13.12	20	46132846	Intergenic	CD40 - CDH22	958	64405		        3.10	       40.89	rs12480534-?	rs12480534	0	12480534	Intergenic	1	NR	9E-6	5.045757490560675	(SF2)	NR	NR	Affymetrix [5,476,100] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	6p21.1	6	41160234	TREM2	TREM2			54209			rs7748513-G	rs7748513	0	7748513	intron	0	0.432	1E-10	10	(AA women)	NR	NR	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	1q23.2	1	159679910	CRP, APCS, DARC, FCER1A, DUSP23, OR10J1, OR10J5, OR10J3, OLFML2B, IFI16, FCRL6	OR10J6P - CRPP1	401973	171422		       80.69	       25.04	rs16827466-T	rs16827466	1	10494326	Intergenic	1	0.178	4E-73	72.39794000867204	(AA Women)	    .42	[0.37-0.46] unit increase	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	2q13	2	113083453	IL1F10, IL1RN	IL1F10 - IL1RN	84639	3557		        7.60	       34.44	rs6734238-G	rs6734238	0	6734238	Intergenic	1	0.446	9E-10	9.045757490560675	(AA women)	    .11	[0.073-0.143] unit decrease	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	12q24.31	12	120982457	HNF1A	HNF1A			6927			rs7979473-A	rs7979473	0	7979473	intron	0	0.443	1E-10	10	(AA women)	    .12	[0.082-0.156] unit decrease	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	19q13.32	19	44900155	TOMM40	TOMM40			10452			rs1160985-C	rs1160985	0	1160985	intron	0	0.366	4E-13	12.39794000867204	(AA women)	    .13	[NR] unit decrease	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	1p31.3	1	65636574	LEPR	LEPR			3953			rs1805096-A	rs1805096	0	1805096	cds-synon	0	0.451	2E-9	8.698970004336019	(HA women)	    .11	[0.064-0.162] unit decrease	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	1q23.2	1	159728759	CRP	CRP - RPL27P2	1401	646446		       14.17	       30.39	rs7553007-G	rs7553007	0	7553007	Intergenic	1	0.344	1E-9	8.999999999999998	(HA women)	    .13	[0.078-0.180] unit increase	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	12q24.31	12	120997784	HNF1A, OASL, C12orf43	HNF1A			6927			rs2259816-T	rs2259816	0	2259816	intron	0	0.379	3E-10	9.522878745280336	(HA women)	    .14	[0.092-0.190] unit increase	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	1q23.2	1	159728759	CRP, APCS, DARC, FCER1A, DUSP23, OR10J1, OR10J5, OR10J3, OLFML2B, IFI16, FCRL6	CRP - RPL27P2	1401	646446		       14.17	       30.39	rs7553007-T	rs7553007	0	7553007	Intergenic	1	0.228	1E-37	37	(AA women)	    .27	[0.23-0.31] (unit decrease)	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	1q23.2	1	159722783	CRP, APCS, DARC, FCER1A, DUSP23, OR10J1, OR10J5, OR10J3, OLFML2B, IFI16, FCRL6	CRP - RPL27P2	1401	646446		        8.19	       36.36	rs2808634-T	rs2808634	0	2808634	Intergenic	1	0.156	3E-10	9.522878745280336	(AA women)	    .15	[0.11-0.20] (unit decrease)	Affymetrix [up to 2,203,609] (imputed)	N
11/02/2012	22939635	Reiner AP	08/28/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22939635	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American females, 3,548 Hispanic females	3,787 African American females, 3,548 Hispanic females, 5,656 European ancestry individuals	20q13.12	20	44413724	HNF4A	HNF4A			3172			rs1800961-T	rs1800961	0	1800961	missense	0	0.04	8E-6	5.096910013008055	(HA women)	    .27	[0.15-0.39] (unit decrease)	Affymetrix [up to 2,203,609] (imputed)	N
10/24/2012	22922875	Vithana EN	08/26/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22922875	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary open-angle)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 3,065 Singaporean Malay ancestry controls, 573 Singaporean Asian Indian ancestry cases, 2,538 Singaporean Asian Indian ancestry controls, 2,018 Vietnamese ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	11p15.1	11	16987058	PLEKHA7	PLEKHA7			144100			rs11024102-G	rs11024102	0	11024102	intron	0	NR	5E-12	11.30102999566398		   1.22	[NR] 	Illumina [493,501] 	N
10/24/2012	22922875	Vithana EN	08/26/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22922875	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary open-angle)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 3,065 Singaporean Malay ancestry controls, 573 Singaporean Asian Indian ancestry cases, 2,538 Singaporean Asian Indian ancestry controls, 2,018 Vietnamese ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	1p21.1	1	102914362	COL11A1	COL11A1			1301			rs3753841-G	rs3753841	0	3753841	missense	0	NR	9E-10	9.045757490560675		   1.20	[NR] 	Illumina [493,501] 	N
10/24/2012	22922875	Vithana EN	08/26/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22922875	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary open-angle)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 3,065 Singaporean Malay ancestry controls, 573 Singaporean Asian Indian ancestry cases, 2,538 Singaporean Asian Indian ancestry controls, 2,018 Vietnamese ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	8q11.23	8	51974981	PCMTD1-ST18	PCMTD1 - ST18	115294	9705		       75.80	      135.85	rs1015213-A	rs1015213	0	1015213	Intergenic	1	NR	3E-9	8.522878745280337		   1.50	[NR] 	Illumina [493,501] 	N
10/24/2012	22922875	Vithana EN	08/26/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22922875	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary open-angle)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 3,065 Singaporean Malay ancestry controls, 573 Singaporean Asian Indian ancestry cases, 2,538 Singaporean Asian Indian ancestry controls, 2,018 Vietnamese ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	22q11.21	22	19902302	TXNRD2	TXNRD2			10587			rs3788317-?	rs3788317	0	3788317	intron	0	NR	2E-7	6.698970004336019		   1.22	[NR] 	Illumina [493,501] 	N
10/24/2012	22922875	Vithana EN	08/26/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22922875	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary open-angle)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 3,065 Singaporean Malay ancestry controls, 573 Singaporean Asian Indian ancestry cases, 2,538 Singaporean Asian Indian ancestry controls, 2,018 Vietnamese ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	1p21.1	1	104310116	NR	FTLP17 - CDK4PS	642337	359941		      156.01	     1123.88	rs10881542-?	rs10881542	0	10881542	Intergenic	1	NR	2E-6	5.698970004336018		   1.18	[NR] 	Illumina [493,501] 	N
10/13/2012	22923054	Chen F	08/25/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22923054	A genome-wide association study of breast cancer in women of African ancestry.	Breast cancer	3,016 African American cases, 2,745 African American controls	3,533 African ancestry cases, 11,046 African ancestry controls	14q31.3	14	87829256	GALC	FLRT2 - GALC	23768	2581		     2200.56	        8.56	rs4322600-G	rs4322600	0	4322600	Intergenic	1	0.78	4E-6	5.397940008672037		   1.18	[1.10-1.27] 	Illumina [2,067,098] (imputed)	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	1p31.3	1	61350127	NF1A	NFIA			4774			rs41350144-T	rs41350144	0	41350144	intron	0	0.477	3E-7	6.522878745280337	(SM vs. NSM)	   2.27	[1.66-3.11] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	1p31.3[rs41453448]; 1p31.3[rs1125777]			NF1A	 - 						3-SNP haplotype	rs41453448,rs1125777,rs12568010					NR	2E-7		(rs41453448-?, rs1125777-?, rs12568010-?)	   2.50	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	1p31.3[rs1125777]; 1p31.3[rs12568010]			NF1A	 - 						2-SNP Haplotype-1	rs1125777, rs12568010					NR	2E-7		(rs1125777-?, rs12568010-?)	   2.34	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	1p31.3[rs17121983]; 1p31.3[rs7556462]			NF1A	 - 						2-SNP Haplotype-2	rs17121983, rs7556462					NR	4E-7		(rs17121983-C, rs7556462-C)	   2.26	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	1p31.3[rs7556462]; 1p31.3[rs4915737]			NF1A	 - 						2-SNP Haplotype-3	rs7556462, rs4915737					NR	4E-7		(rs7556462-C, rs4915737-C)	   2.26	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	7q11.22	7	70580955	AUTS2	AUTS2			26053			rs10237317-?	rs10237317	0	10237317	intron	0	NR	5E-6	5.301029995663981	(SM vs. Control)	   1.78	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	9p22.3	9	15309930	TTC39B	TTC39B - RPL7P33	158219	286348		        2.57	       51.44	rs2245641-?	rs2245641	0	2245641	Intergenic	1	NR	2E-6	5.698970004336018	(SM vs. Control)	   1.90	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	4q22.1	4	88299792	PIGY	LOC101929118			101929118			rs9995093-?	rs9995093	0	9995093	intron	0	NR	7E-6	5.154901959985742	(NSM vs. Control)	   2.07	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	9q21.11	9	69328086	PGM5	FAM189A2			9413			rs3750552-?	rs3750552	0	3750552	intron	0	NR	5E-6	5.301029995663981	(NSM vs. Control)	   1.68	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	10p12.31	10	20503405	Intergenic	AMD1P1 - MIR4675	100133024	100616383		      152.31	       48.57	rs7897194-?	rs7897194	0	7897194	Intergenic	1	NR	8E-6	5.096910013008055	(NSM vs. Control)	   2.91	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	12q12	12	40853940	Intergenic	CNTN1			1272			rs312273-?	rs312273	0	312273	intron	0	NR	9E-6	5.045757490560675	(NSM vs. Control)	   1.57	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	14q24.3	14	77218327	Intergenic	TMEM63C			57156			rs4467006-?	rs4467006	0	4467006	intron	0	NR	7E-6	5.154901959985742	(NSM vs. Control)	   1.59	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	14q24.3	14	77218499	Intergenic	TMEM63C			57156			rs2287375-?	rs2287375	0	2287375	intron	0	NR	5E-6	5.301029995663981	(NSM vs. Control)	   1.61	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	19q13.12	19	35482387	Intergenic	FFAR2 - KRTDAP	2867	388533		       30.62	        4.94	rs6510489-?	rs6510489	0	6510489	Intergenic	1	NR	8E-6	5.096910013008055	(NSM vs. Control)	   1.92	[NR] 	Affymetrix [703,012]	N
11/19/2012	22925353	Lee HJ	08/25/2012	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/22925353	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NR	20q13.12	20	45092852	SERINC3	KCNS1			3787			rs6124684-?	rs6124684	0	6124684	UTR-3	0	NR	9E-6	5.045757490560675	(NSM vs. Control)	   1.73	[NR] 	Affymetrix [703,012]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	5p15.33	5	1895715	NR	CTD-2194D22.4			101929081			rs12653946-T	rs12653946	0	12653946	intron	0	0.43	3E-7	6.522878745280337	(Japanese)	   1.39	[1.22-1.57] 	Illumina [528,023]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8p21.2	8	23668950	NR	FAM60DP - NKX3-1	646721	4824		       33.44	        9.74	rs1512268-T	rs1512268	0	1512268	Intergenic	1	0.36	5E-6	5.301029995663981	(Japanese)	   1.35	[1.19-1.53] 	Illumina [528,023]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	8	127094635	NR	SRRM1P1 - CCAT1	401475	100507056		        6.11	      112.75	rs6983561-C	rs6983561	0	6983561	Intergenic	1	0.18	4E-13	12.39794000867204	(Japanese)	   1.87	[1.58-2.22] 	Illumina [528,023]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	8	127519892	NR	CASC8 - CASC11	727677	100270680		       37.75	      210.44	rs10090154-T	rs10090154	0	10090154	Intergenic	1	0.08	3E-6	5.522878745280337	(Latin American)	   1.68	[1.35-2.09] 	Illumina [528,023]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	8	127112950	NR	SRRM1P1 - CCAT1	401475	100507056		       24.42	       94.43	rs10505483-T	rs10505483	0	10505483	Intergenic	1	NR	7E-15	14.15490195998574	(Japanese and Latin American)	   1.73	NR 	Illumina [528,023]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	3p12.1	3	87085650	NR	PPATP1 - LINC00506	100289640	100846978		       32.91	        3.63	rs17023900-G	rs17023900	0	17023900	Intergenic	1	NR	6E-8	7.221848749616355	(Japanese and Latin American)	   1.41	NR 	Illumina [528,023]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8p21.2	8	23676505	NR	FAM60DP - NKX3-1	646721	4824		       41.00	        2.19	rs10503733-T	rs10503733	0	10503733	Intergenic	1	NR	8E-8	7.096910013008055	(Japanese and Latin American)	   1.29	NR 	Illumina [528,023]	N
10/23/2012	22923026	Cheng I	08/24/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22923026	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	8q24.21	8	127092098	NR	PRNCR1			101867536			rs13254738-C	rs13254738	0	13254738	ncRNA	0	0.54	4E-10	9.397940008672037	(Japanese)	   1.59	[1.38-1.84] 	Illumina [528,023]	N
11/19/2012	23067351	Rasmussen-Torvik LJ	08/23/2012	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/23067351	High density GWAS for LDL cholesterol in African Americans using electronic medical records reveals a strong protective variant in APOE.	LDL cholesterol	1,249 African American individuals	NR	19q13.32	19	44908822	APOE	APOE			348			rs7412-?	rs7412	0	7412	missense	0	0.10	2E-9	8.698970004336019		  12.30	[8.4-16.3] mg/dL decrease	Illumina [910,341]	N
10/23/2012	22911880	Boraska V	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22911880	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	5q35.3	5	179605487	RUFY1	RUFY1;LOC101928445			80230;101928445			rs6894268-A	rs6894268	0	6894268	intron;nearGene-5	0	0.354	3E-6	5.522878745280337	(Body Dissatisfaction)	   1.44	[0.84-2.04] unit increase	Illumina [283,744]	N
10/23/2012	22911880	Boraska V	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22911880	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	3q25.31	3	157119117	CCNL1, LEKR1	LINC00880			339894			rs7624327-A	rs7624327	0	7624327	intron	0	0.098	3E-6	5.522878745280337	(Bulimia)	   1.13	[1.06-1.16] 	Illumina [283,744]	N
10/23/2012	22911880	Boraska V	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22911880	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	4q28.3	4	132405240	Intergenic	ELL2P2 - R3HDM2P1	100421143	100419742		       36.83	      718.86	rs7690467-T	rs7690467	0	7690467	Intergenic	1	0.715	7E-6	5.154901959985742	(OCPD)	   1.12	[1.07-1.18] 	Illumina [283,744]	N
10/23/2012	22911880	Boraska V	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22911880	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	18p11.31	18	4721359	DLGAP1	DLGAP1-AS5 - PPIAP14	284215	5486		      425.36	      281.15	rs1557305-C	rs1557305	0	1557305	Intergenic	1	0.628	5E-6	5.301029995663981	(OCPD)	   1.11	[1.06-1.16] 	Illumina [283,744]	N
10/23/2012	22911880	Boraska V	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22911880	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	8q23.3	8	115098496	TRPS1	RPL18P7 - TRPS1	100270945	7227		     1721.21	      310.00	rs218361-G	rs218361	0	218361	Intergenic	1	0.429	7E-6	5.154901959985742	(WF)	   1.06	[1.03-1.08] 	Illumina [283,744]	N
10/23/2012	22911880	Boraska V	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22911880	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	15q21.1	15	47600101	SEMA6D	SEMA6D			80031			rs1898111-A	rs1898111	0	1898111	intron	0	0.837	8E-6	5.096910013008055	(OCPD)	   1.15	[1.08-1.22] 	Illumina [283,744]	N
10/23/2012	22911880	Boraska V	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22911880	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	15q21.1	15	48929394	SHC4	SHC4			399694			rs10519201-T	rs10519201	0	10519201	intron	0	0.132	6E-6	5.221848749616356	(OCPD)	   1.16	[1.09-1.23] 	Illumina [283,744]	N
10/17/2012	22915352	Power RA	08/22/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22915352	Dissecting the genetic heterogeneity of depression through age at onset.	Depression (age of onset)	Up to 2,746 European ancestry cases, 1,584 European ancestry controls	1383 European ancestry cases, 1403 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [471,581]	N
10/12/2012	22907691	Breitfeld J	08/21/2012	Int J Obes (Lond)	http://www.ncbi.nlm.nih.gov/pubmed/22907691	Genetic variation in the vaspin gene affects circulating serum vaspin concentrations.	Vaspin levels	826 European ancestry individuals	1806 European ancestry individuals	14q32.13	14	94546047	vaspin, serpinA4	SERPINA12 - SERPINA4	145264	5267		       28.20	       15.37	rs11160190-G	rs11160190	0	11160190	Intergenic	1	NR	4E-41	40.39794000867204		    .04	[NR] unit decrease	Affymetrix [390,619]	N
10/24/2012	22907730	Ji Y	08/21/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22907730	Pharmacogenomics of selective serotonin reuptake inhibitor treatment for major depressive disorder: genome-wide associations and functional genomics.	Response to antidepressants	Up to 499 European ancestry cases	1,207 European ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [532,877]	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	1q24.3	1	171122735	FMO3, FMO6P	MIR1295B - FMO6P	100847009	388714		       20.94	       15.01	rs1795240-A	rs1795240	0	1795240	Intergenic	1	0.43	5E-8	7.30102999566398		 112.27	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	1q21.3	1	153876520	GATAD2B	GATAD2B			57459			rs7414227-G	rs7414227	0	7414227	intron	0	0.49	3E-6	5.522878745280337		  99.50	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	1q21.3	1	153966654	SLC39A1	SLC39A1;CREB3L4			27173;148327			rs11264736-T	rs11264736	0	11264736	intron;nearGene-5	0	0.47	4E-6	5.397940008672037		  98.69	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	2q14.3	2	122368903	Intergenic	TSN - CNTNAP5	7247	129684		      601.05	     1656.38	rs10496584-G	rs10496584	0	10496584	Intergenic	1	0.11	4E-6	5.397940008672037		 158.69	[NR] unit increase	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	6q23.2	6	130961070	EPB41L2	EPB41L2			2037			rs6941712-C	rs6941712	0	6941712	intron	0	0.13	5E-6	5.301029995663981		 149.67	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	2q14.3	2	122370213	Intergenic	TSN - CNTNAP5	7247	129684		      602.36	     1655.07	rs2037892-A	rs2037892	0	2037892	Intergenic	1	0.11	5E-6	5.301029995663981		 156.70	[NR] unit increase	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	2q14.3	2	122379314	Intergenic	TSN - CNTNAP5	7247	129684		      611.46	     1645.97	rs1919922-T	rs1919922	0	1919922	Intergenic	1	0.11	5E-6	5.301029995663981		 155.52	[NR] unit increase	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	1q21.3	1	153796924	LOC343052	LOC343052			343052			rs9426935-C	rs9426935	0	9426935		0	0.49	5E-6	5.301029995663981		  96.63	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	19q12	19	29245435	Intergenic	UQCRFS1 - VSTM2B	7386	342865		       32.21	      281.15	rs11083866-A	rs11083866	0	11083866	Intergenic	1	0.26	5E-6	5.301029995663981		 114.77	[NR] unit increase	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	1q21.3	1	153941294	DENND4B	DENND4B			9909			rs2252508-G	rs2252508	0	2252508	intron	0	0.47	5E-6	5.301029995663981		  97.78	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	2q14.3	2	122383969	Intergenic	TSN - CNTNAP5	7247	129684		      616.12	     1641.32	rs4848768-G	rs4848768	0	4848768	Intergenic	1	0.11	6E-6	5.221848749616356		 154.60	[NR] unit increase	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	11q14.1	11	80666008	Intergenic	LOC101928964			101928964			rs17140547-T	rs17140547	0	17140547	intron	0	0.02	8E-6	5.096910013008055		 532.56	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	20q13.33	20	60323151	Intergenic	MIR646 - MTCO2P1	693231	140909		       14.58	       91.25	rs6027511-C	rs6027511	0	6027511	Intergenic	1	0.17	9E-6	5.045757490560675		 122.24	[NR] unit decrease	Illumina [2,380,200] (imputed)	N
10/12/2012	22903471	Hibar DP	08/18/2012	Brain Imaging Behav	http://www.ncbi.nlm.nih.gov/pubmed/22903471	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume 	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NR	1q23.3	1	165478920	LOC400794	LOC400794			400794			rs10918196-C	rs10918196	0	10918196	intron	0	0.41	9E-6	5.045757490560675		  93.94	[NR] unit increase	Illumina [2,380,200] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	1p32.3	1	55492357	PCSK9, USP24	GOT2P1 - RPSAP20	645538	127406		      123.58	      715.11	rs1998013-?	rs1998013	0	1998013	Intergenic	1	0.02	5E-13	12.30102999566398		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	1p31.3	1	62485187	ANGPTL3, DOCK7	DOCK7			85440			rs10889332-?	rs10889332	0	10889332	intron	0	0.29	8E-15	14.09691001300805		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	1q42.13	1	230160042	GALNT2	GALNT2			2590			rs10127775-?	rs10127775	0	10127775	intron	0	0.44	1E-9	8.999999999999998		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	2p24.1	2	21014672	APOB	APOB			338			rs673548-?	rs673548	0	673548	intron	0	0.27	1E-13	13		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	0.36	1E-12	12		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	2p14	2	64980940	SLC1A4	RPL11P1 - SLC1A4	100133170	6509		       20.32	        7.51	rs10211524-?	rs10211524	0	10211524	Intergenic	1	0.39	3E-10	9.522878745280336		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-?	rs560887	0	560887	intron	0	0.31	4E-15	14.39794000867204		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	4q13.3	4	72779634	ADAMTS3	ADAMTS3 - HNRNPA1P67	9508	728019		      210.84	       27.55	rs12507628-?	rs12507628	0	12507628	Intergenic	1	0.18	3E-9	8.522878745280337		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	4q22.1	4	88305270	PPM1K, HERC6	LOC101929118			101929118			rs1440581-?	rs1440581	0	1440581	intron	0	0.47	1E-10	10		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	4q35.2	4	186228386	CYP4V2, KLKB1	KLKB1			3818			rs1912826-?	rs1912826	0	1912826	intron	0	0.43	4E-12	11.39794000867204		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	5q35.3	5	177415473	PFN3, F12, GRK6	F12 - GRK6	2161	2870		        5.90	       11.02	rs2731672-?	rs2731672	0	2731672	Intergenic	1	0.27	3E-14	13.52287874528034		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	6p24.2	6	11040190	ELOVL2	ELOVL2			54898			rs3798722-?	rs3798722	0	3798722	intron	0	0.12	4E-9	8.397940008672036		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	8p23.1	8	9326086	PPP1R3B, TNKS	LOC157273			157273			rs4841132-?	rs4841132	0	4841132	ncRNA	0	0.15	2E-9	8.698970004336019		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-?	rs12678919	0	12678919	Intergenic	1	0.09	9E-13	12.04575749056067		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	9q31.1	9	104826853	ABCA1	ABCA1			19			rs4149310-?	rs4149310	0	4149310	intron	0	0.10	2E-10	9.698970004336017		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	11q12.2	11	61790331	FADS1,FADS2,FADS3	TMEM258			746			rs102275-?	rs102275	0	102275	intron	0	0.43	4E-264	263.397940008672		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	11q23.3	11	116778201	APOA1, APOC3, APOA4, APOA5	ZPR1			8882			rs964184-?	rs964184	0	964184	intron	0	0.14	8E-20	19.09691001300806		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	12q13.3	12	56469986	SPRYD4, GLS2	SPRYD4			283377			rs2657880-?	rs2657880	0	2657880	UTR-3	0	0.14	7E-30	29.15490195998574		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-?	rs1532085	0	1532085	intron	0	0.44	9E-104	103.0457574905607		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	16q13	16	56954132	CETP	HERPUD1 - CETP	9709	1071		       10.25	        7.79	rs173539-?	rs173539	0	173539	Intergenic	1	0.28	3E-70	69.52287874528032		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	16q22.2	16	71600908	TAT	TAT - MARVELD3	6898	91862		       23.81	       25.25	rs4788815-?	rs4788815	0	4788815	Intergenic	1	0.35	4E-13	12.39794000867204		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	16q22.2	16	72080103	HP, HPR, DHX38	TXNL4B			54957			rs217181-?	rs217181	0	217181	intron	0	0.18	1E-36	35.99999999999999		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	17p13.2	17	4779740	GLTPD2, TM4SF5, VM01	TM4SF5			9032			rs12051548-?	rs12051548	0	12051548	intron	0	0.06	1E-11	11		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-?	rs6511720	0	6511720	intron	0	0.10	4E-9	8.397940008672036		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	19q13.32	19	44912383	APOE, APOEC1, APOEC2	APOC1			341			rs445925-?	rs445925	0	445925	nearGene-5	0	0.06	6E-42	41.22184874961635		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	20q13.12	20	45916409	PLTP	PLTP - PCIF1	5360	63935		        4.05	       18.27	rs4810479-?	rs4810479	0	4810479	Intergenic	1	0.27	2E-42	41.69897000433601		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	22q11.21	22	19168604	GSC2, SLC25A1, CLTCL1	GSC2 - SLC25A1	2928	6576		       18.32	        6.97	rs712964-?	rs712964	0	712964	Intergenic	1	0.41	3E-11	10.52287874528034		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	4q13.3	4	71842104	GC	GC - NPFFR2	2638	10886		       36.58	      189.70	rs1851024-?	rs1851024	0	1851024	Intergenic	1	0.05	1E-14	14		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	4q13.3	4	74006728	CXCL5, PF4, PPBP	CXCL5 - CXCL3	6374	2921		        8.00	       29.86	rs16850360-?	rs16850360	0	16850360	Intergenic	1	0.03	3E-10	9.522878745280336		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	4q13.3	4	74357994	EREG	EPGN - EREG	255324	2069		       41.19	        7.15	rs2168889-?	rs2168889	0	2168889	Intergenic	1	0.05	6E-14	13.22184874961636		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	14q32.13	14	94378506	SERPINA1	SERPINA1			5265			rs1303-?	rs1303	0	1303	missense	0	0.24	5E-48	47.30102999566397		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	15q21.3	15	58179780	AQP9	AQP9			366			rs16939881-?	rs16939881	0	16939881	intron	0	0.05	3E-27	26.52287874528033		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	15q22.2	15	59195731	MYO1E, CCNB2, RNF111	MYO1E			4643			rs2306786-?	rs2306786	0	2306786	intron	0	0.17	1E-10	10		NR	NR	Illumina [~2 million] (imputed)	N
11/21/2012	22916037	Inouye M	08/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22916037	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NR	16q22.2	16	72722202	ZFHX3	PMFBP1 - KRT18P18	83449	342374		      549.75	        6.36	rs10500569-?	rs10500569	0	10500569	Intergenic	1	0.23	7E-12	11.15490195998574		NR	NR	Illumina [~2 million] (imputed)	N
11/22/2012	22899653	Timofeeva MN	08/16/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22899653	Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls.	Lung cancer	up to 14,900 European ancestry cases, up to 29,485 European ancestry controls	2,338 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	12p13.33	12	955272	RAD52	RAD52			5893			rs10849605-?	rs10849605	0	10849605	intron	0	0.51	6E-7	6.221848749616355		   1.08	[1.04-1.11] 	Illumina [up to 536,008] 	N
11/04/2012	22895189	Timmann C	08/15/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22895189	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	1q32.1	1	203684896	ATP2B4	ATP2B4			493			rs10900585-T	rs10900585	0	10900585	intron	0	0.62	2E-10	9.698970004336017		   1.64	[NR] 	Affymetrix [4,205,739] (imputed)	N
11/04/2012	22895189	Timmann C	08/15/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22895189	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	9q34.2	9	133257521	ABO	ABO			28			rs8176719-G	rs8176719	0	8176719		0	0.37	4E-21	20.39794000867204		   1.48	[NR] 	Affymetrix [4,205,739] (imputed)	N
11/04/2012	22895189	Timmann C	08/15/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22895189	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	11p15.4	11	5496926	HBB	OR52D1 - UBQLN3	390066	50613		        7.18	       10.37	rs372091-C	rs372091	0	372091	Intergenic	1	0.972	6E-14	13.22184874961636		   2.17	[NR] 	Affymetrix [4,205,739] (imputed)	N
11/04/2012	22895189	Timmann C	08/15/2012	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22895189	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	16q22.2	16	71619734	MARVELD3	TAT - MARVELD3	6898	91862		       42.64	        6.42	rs2334880-C	rs2334880	0	2334880	Intergenic	1	0.45	2E-6	5.698970004336018		   1.19	[NR] 	Affymetrix [4,205,739] (imputed)	N
10/23/2012	22889924	Scharf JM	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889924	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American ancestry cases, 285 Latin American ancestry controls	9q32	9	114228791	COL27A1, KIF12, ORM1	COL27A1			85301			rs7868992-G	rs7868992	0	7868992	intron	0	0.28	3E-8	7.522878745280337		   1.29	[NR] 	Illumina [484,295]	N
10/23/2012	22889924	Scharf JM	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889924	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American ancestry cases, 285 Latin American ancestry controls	Xp22.11	23	22116540	PHEX	PHEX			5251			rs5951698-G	rs5951698	0	5951698	intron	0	0.0032	6E-6	5.221848749616356		   5.65	[NR] 	Illumina [484,295]	N
10/23/2012	22889924	Scharf JM	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889924	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American ancestry cases, 285 Latin American ancestry controls	9q31.1	9	102740216	Intergenic	ZYG11AP1 - CYLC2	100131879	1539		      128.25	      255.10	rs10990268-C	rs10990268	0	10990268	Intergenic	1	0.12	5E-6	5.301029995663981		   1.29	[NR] 	Illumina [484,295]	N
10/23/2012	22889924	Scharf JM	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889924	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American ancestry cases, 285 Latin American ancestry controls	12q23.3	12	106391776	POLR3B, TCP11L2, FLJ45508	POLR3B			55703			rs6539267-T	rs6539267	0	6539267	intron	0	0.69	6E-6	5.221848749616356		   1.27	[NR] 	Illumina [484,295]	N
10/23/2012	22889924	Scharf JM	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889924	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American ancestry cases, 285 Latin American ancestry controls	7p21.3	7	12020180	THSD7A, TMEM106B	THSD7A - TMEM106B	221981	54664		      187.98	      191.02	rs769111-T	rs769111	0	769111	Intergenic	1	0.62	6E-6	5.221848749616356		   1.23	[NR] 	Illumina [484,295]	N
10/23/2012	22889924	Scharf JM	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889924	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American ancestry cases, 285 Latin American ancestry controls	11q14.2	11	86072696	PICALM	PICALM - FNTAP1	8301	283226		        2.82	      122.44	rs621942-A	rs621942	0	621942	Intergenic	1	.24	9E-6	5.045757490560675		   1.22	[NR] 	Illumina [484,295]	N
10/23/2012	22889924	Scharf JM	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889924	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American ancestry cases, 285 Latin American ancestry controls	6p22.3	6	23077083	Intergenic	HDGFL1 - RPL6P18	154150	100131805		      506.56	       25.58	rs9393366-A	rs9393366	0	9393366	Intergenic	1	0.28	8E-6	5.096910013008055		   1.27	[NR] 	Illumina [484,295]	N
10/12/2012	22889921	Stewart SE	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889921	Genome-wide association study of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,279 European ancestry cases, 5,139 European ancestry controls, 93 South African Afrikaner ancestry cases, 158  South African Afrikaner ancestry controls, 93 Ashkenazi Jewish cases, 260 Ashkenazi Jewish controls, 299 European ancestry trios, 101 trios	NA	12q13.12	12	49925303	FAIM2, AQP2	LOC101927292;LOC102723941			101927292;102723941			rs297941-?	rs297941	0	297941	ncRNA;nearGene-5	0	NR	5E-7	6.30102999566398		   1.23	NR 	Illumina [479,067]	N
10/12/2012	22889921	Stewart SE	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889921	Genome-wide association study of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,279 European ancestry cases, 5,139 European ancestry controls, 93 South African Afrikaner ancestry cases, 158  South African Afrikaner ancestry controls, 93 Ashkenazi Jewish cases, 260 Ashkenazi Jewish controls, 299 European ancestry trios, 101 trios	NA	6q16.3	6	103997492	GRIK2, HACE1	GRIK2 - R3HDM2P2	2898	100129694		     1927.41	       20.14	rs9499708-?	rs9499708	0	9499708	Intergenic	1	NR	3E-6	5.522878745280337		   1.20	NR 	Illumina [479,067]	N
10/12/2012	22889921	Stewart SE	08/14/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22889921	Genome-wide association study of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,279 European ancestry cases, 5,139 European ancestry controls, 93 South African Afrikaner ancestry cases, 158  South African Afrikaner ancestry controls, 93 Ashkenazi Jewish cases, 260 Ashkenazi Jewish controls, 299 European ancestry trios, 101 trios	NA	13q21.33	13	72114636	DACH1, MZT1	RNA5SP32 - RPL18AP17	100873364	100873859		      136.43	      345.49	rs9652236-?	rs9652236	0	9652236	Intergenic	1	NR	5E-6	5.301029995663981		   1.40	NR 	Illumina [479,067]	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	2p16.3	2	48974473	FSHR	FSHR			2492			rs2268361-C	rs2268361	0	2268361	intron	0	0.504	1E-12	12		   1.15	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	9q22.32	9	94979054	C9orf3	C9orf3			84909			rs3802457-G	rs3802457	0	3802457	intron	0	0.904	5E-14	13.30102999566398		   1.30	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	11q22.1	11	102199908	YAP1	YAP1			10413			rs1894116-G	rs1894116	0	1894116	intron	0	0.194	1E-22	22		   1.27	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	12q13.2	12	55996852	RAB5B, SUOX	RAB5B;SUOX			5869;6821			rs705702-G	rs705702	0	705702	nearGene-3;nearGene-5	0	0.245	9E-26	25.04575749056067		   1.27	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	12q14.3	12	65830681	HMGA2	HMGA2			8091			rs2272046-A	rs2272046	0	2272046	intron	0	0.907	2E-21	20.69897000433602		   1.43	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	16q12.1	16	52313907	TOX3	LINC00919 - TOX3	100505619	27324		      228.80	      123.86	rs4784165-G	rs4784165	0	4784165	Intergenic	1	0.325	4E-11	10.39794000867204		   1.15	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	19p13.2	19	7166098	INSR	INSR			3643			rs2059807-G	rs2059807	0	2059807	intron	0	1.24	1E-8	8		   1.14	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	20q13.2	20	53830764	SUMO1P1	RNU7-14P - SUMO1P1	100147762	391257		      162.01	       43.73	rs6022786-A	rs6022786	0	6022786	Intergenic	1	0.339	2E-9	8.698970004336019		   1.13	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	2p16.3	2	48751020	LHCGR	LHCGR;STON1-GTF2A1L			3973;286749			rs13405728-A	rs13405728	0	13405728	intron;intron	0	NR	4E-9	8.397940008672036		   1.35	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	2p21	2	43411699	NR	THADA			63892			rs13429458-A	rs13429458	0	13429458	intron	0	NR	4E-13	12.39794000867204		   1.49	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22885925	Shi Y	08/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22885925	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	9q33.3	9	123762933	NR	DENND1A			57706			rs2479106-G	rs2479106	0	2479106	intron	0	NR	5E-10	9.301029995663981		   1.35	[NR] 	Affymetrix [NR] (imputed)	N
10/09/2012	22886559	Rajaraman P	08/11/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22886559	Genome-wide association study of glioma and meta-analysis.	Glioma	1,856 European ancestry cases, 4,955 European ancestry controls	5,015 European ancestry cases, 11,601 European ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-G	rs2736100	0	2736100	intron	0	0.494	4E-9	8.397940008672036		   1.30	[1.19-1.41] 	Illumina [559,977]	N
10/09/2012	22886559	Rajaraman P	08/11/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22886559	Genome-wide association study of glioma and meta-analysis.	Glioma	1,856 European ancestry cases, 4,955 European ancestry controls	5,015 European ancestry cases, 11,601 European ancestry controls	9p21.3	9	22068653	CDKN2BAS	CDKN2B-AS1;LOC102724137			100048912;102724137			rs4977756-G	rs4977756	0	4977756	intron;intron	0	.423	1E-8	8		   1.28	[1.177-1.398] 	Illumina [559,977]	N
10/09/2012	22886559	Rajaraman P	08/11/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22886559	Genome-wide association study of glioma and meta-analysis.	Glioma	1,856 European ancestry cases, 4,955 European ancestry controls	5,015 European ancestry cases, 11,601 European ancestry controls	20q13.33	20	63678486	RTEL1,TNFRSF6B	RTEL1;RTEL1-TNFRSF6B			51750;100533107			rs6010620-G	rs6010620	0	6010620	intron;intron	0	.771	1E-10	10		   1.43	[1.28-1.59] 	Illumina [559,977]	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	7q32.1	7	129365006	AHCLY2	AHCYL2			23382			rs11766298-T	rs11766298	0	11766298	intron	0	NR	4E-9	8.397940008672036	(VLDL diameter)	   4.41	[2.96-5.86] unit increase	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	7p21.3	7	9027190	NXPH1	RPL9P19 - GAPDHP68	100129634	100132601		       87.74	      587.72	rs10952132-T	rs10952132	0	10952132	Intergenic	1	NR	1E-6	5.999999999999999	(LDL diameter)	    .31	[-0.94440-1.56440] unit increase	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	10q21.3	10	63267098	JMJ1C	JMJD1C			221037			rs10995485-G	rs10995485	0	10995485	intron	0	NR	2E-6	5.698970004336018	(LDL diameter)	   1.18	[0.69-1.67] unit decrease	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	6q27	6	165521933	PDE10	PDE10A			10846			rs519595-G	rs519595	0	519595	intron	0	NR	2E-6	5.698970004336018	(LDL diameter)	    .60	[0.36-0.84] unit decrease	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	7q21.11	7	80657592	CD36	CD36			948			rs11574703-T	rs11574703	0	11574703	intron	0	NR	8E-8	7.096910013008055	(HDL diameter)	   3.72	[2.39-5.05] unit decrease	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	NR			NR	 - 						rs5001812-T	rs5001812					NR	2E-7		(HDL diameter)	   4.67	[2.93-6.41] unit decrease	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	5q32	5	149762504	PPARC1B	PPARGC1B			133522			rs9285640-G	rs9285640	0	9285640	intron	0	NR	3E-7	6.522878745280337	(HDL diameter)	  29.95	[18.62-41.28] unit decrease	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	7q31.1	7	112037851	DOCK4	DOCK4			9732			rs10428959-T	rs10428959	0	10428959	intron	0	NR	1E-7	7	(VLDL diameter)	   6.00	[3.79-8.21] unit increase	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	7p21.3	7	9027190	NXPH1	RPL9P19 - GAPDHP68	100129634	100132601		       87.74	      587.72	rs10952132- T	rs10952132	0	10952132	Intergenic	1	NR	7E-6	5.154901959985742	(Large LDL)	    .29	[-0.98400-1.56400] unit increase	Affymetrix [~2,543,887] (imputed)	N
10/09/2012	22890011	Frazier-Wood AC	08/09/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22890011	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NR	6q27	6	165521933	PDE10	PDE10A			10846			rs519595-G	rs519595	0	519595	intron	0	NR	5E-6	5.301029995663981	(Large LDL)	    .58	[0.33-0.83] unit decrease	Affymetrix [~2,543,887] (imputed)	N
10/23/2012	22872573	Hu L	08/07/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22872573	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	5p14.1	5	26389153	CDH9	MSNP1 - CDH9	4479	1007		      475.88	      491.45	rs969088-C	rs969088	0	969088	Intergenic	1	NR	2E-6	5.698970004336018	(Han Chinese)	   1.43	[1.24-1.66] 	NR [576,351]	N
10/23/2012	22872573	Hu L	08/07/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22872573	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	7q31.31	7	118351841	CFTR, WNT2, ST7	ANKRD7 - GTF3AP6	56311	100135063		      109.11	      528.35	rs41997-A	rs41997	0	41997	Intergenic	1	NR	4E-7	6.397940008672037	(Han Chinese)	   1.52	[1.28-1.79] 	NR [576,351]	N
10/23/2012	22872573	Hu L	08/07/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22872573	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	9p21.3	9	23426273	HuB	CLIC4P1 - SUMO2P2	646609	100859924		      678.04	      205.83	rs12000445-A	rs12000445	0	12000445	Intergenic	1	NR	7E-6	5.154901959985742	(Han Chinese)	   1.49	[1.25-1.75] 	NR [576,351]	N
10/23/2012	22872573	Hu L	08/07/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22872573	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	5p14.1	5	26389153	CDH9	MSNP1 - CDH9	4479	1007		      475.88	      491.45	rs969088-C	rs969088	0	969088	Intergenic	1	NR	3E-6	5.522878745280337	(Han Chinese + EA)	   1.40	[1.22-1.61] 	NR [576,351]	N
10/23/2012	22872573	Hu L	08/07/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22872573	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	14q24.3	14	78068563	SKIIP, SNW1, ALKBH1, NRXN3	FRDAP - NRXN3	122942	9369		        8.18	      101.81	rs3850370-C	rs3850370	0	3850370	Intergenic	1	NR	4E-6	5.397940008672037	(Han Chinese + EA)	   1.31	[1.17-1.47] 	NR [576,351]	N
09/29/2012	22883433	Irish Schizophrenia Genomics Consortium & the Wellcome Trust Case Control Consortium 2	08/07/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22883433	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	6p22.1	6	30197496	MHC, TRIM26	TRIM26			7726			rs2523722-G	rs2523722	0	2523722	intron	0	0.737	1E-16	16		   1.25	[1.12-1.39] 	Affymetrix [6,212,339]	N
09/29/2012	22883433	Irish Schizophrenia Genomics Consortium & the Wellcome Trust Case Control Consortium 2	08/07/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22883433	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	22q13.1	22	39559868	CACNA1I	RPS19BP1 - CACNA1I	91582	8911		       27.01	       10.89	rs9611198-C	rs9611198	0	9611198	Intergenic	1	0.458	8E-6	5.096910013008055		   1.22	[1.11-1.34] 	Affymetrix [6,212,339]	N
09/29/2012	22869035	Logue MW	08/07/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22869035	A genome-wide association study of post-traumatic stress disorder identifies the retinoid-related orphan receptor alpha (RORA) gene as a significant risk locus.	Post-traumatic stress disorder	295 European ancestry cases, 196 European ancestry controls	143 African American cases, 462 African American controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [1,199,491]	N
10/13/2012	22863731	Cheung CL	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863731	Genome-wide association study identifies a susceptibility locus for thyrotoxic periodic paralysis at 17q24.3.	Thyrotoxic hypokalemic periodic paralysis	69 Chinese ancestry cases, 1,170 East Asian ancestry controls, 	54 Chinese ancestry cases, 400 Taiwanese ancestry controls	17q24.3	17	70330197	KCNJ16, KCNJ2	CALM2P1 - CASC17	100128390	101928165		       87.82	      767.58	rs312691-C	rs312691	0	312691	Intergenic	1	0.76	8E-14	13.09691001300805		   3.20	[2.40-4.40] 	Illumina [486,782]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1p22.1	1	94087882	NR	ABCA4			24			rs560426-G	rs560426	0	560426	intron	0	NR	3E-12	11.52287874528034	(Meta-All, NSCL/P)	   1.42	[1.243-1.623] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1q32.2	1	209803766	IRF6	IRF6			3664			rs861020-A	rs861020	0	861020	intron	0	NR	3E-12	11.52287874528034	(Meta-All, NSCL/P)	   1.44	[1.273-1.635] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q24.21	8	128933908	NR	LINC01263 - LINC00977	101927774	728724		      505.99	      282.56	rs987525-A	rs987525	0	987525	Intergenic	1	NR	5E-35	34.30102999566398	(Meta-All, NSCL/P)	   1.92	[1.66-2.218] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	10q25.3	10	117068049	NR	KIAA1598			57698			rs7078160-A	rs7078160	0	7078160	intron	0	NR	4E-11	10.39794000867204	(Meta-All, NSCL/P)	   1.38	[1.213-1.576] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	17q22	17	56695877	NR	NOG - C17orf67	9241	339210		      100.29	       96.04	rs227731-C	rs227731	0	227731	Intergenic	1	NR	2E-8	7.698970004336018	(Meta-All, NSCL/P)	   1.23	[1.078-1.400] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	20q12	20	40640434	NR	HSPE1P1 - MAFB	140895	9935		      707.20	       45.41	rs13041247-T	rs13041247	0	13041247	Intergenic	1	NR	6E-9	8.221848749616356	(Meta-All, NSCL/P)	   1.19	[1.06-1.35] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1p36.13	1	18653380	PAX7	PAX7			5081			rs742071-T	rs742071	0	742071	intron	0	NR	7E-9	8.154901959985743	(Meta-All, NSCL/P)	   1.32	[1.126-1.537] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	2p21	2	43312986	THADA	THADA			63892			rs7590268-G	rs7590268	0	7590268	intron	0	NR	1E-8	8	(Meta-All, NSCL/P)	   1.42	[1.225-1.636] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	3p11.1	3	89485227	EPHA3	EPHA3 - PROSP	2042	5628		        3.09	      715.88	rs7632427-T	rs7632427	0	7632427	Intergenic	1	NR	4E-8	7.397940008672037	(Meta-All, NSCL/P)	   1.37	[1.20-1.55] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q21.3	8	87856112	NR	SOX5P - DCAF4L2	6661	138009		       66.43	       14.63	rs12543318-C	rs12543318	0	12543318	Intergenic	1	NR	2E-8	7.698970004336018	(Meta-All, NSCL/P)	   1.27	[1.106-1.463] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	13q31.1	13	80118676	SPRY2	LINC01080 - SPRY2	101515984	10253		       92.01	      217.30	rs8001641-A	rs8001641	0	8001641	Intergenic	1	NR	3E-10	9.522878745280336	(Meta-All, NSCL/P)	   1.31	[1.13-1.511] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	15q22.2	15	63020433	TPM1	MIR190A - TPM1	406965	7168		      196.39	       22.21	rs1873147-C	rs1873147	0	1873147	Intergenic	1	NR	8E-7	6.096910013008056	(Meta-All, NSCL/P)	   1.43	[1.23-1.666] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1p22.1	1	94087882	IRF6	ABCA4			24			rs560426-G	rs560426	0	560426	intron	0	NR	5E-10	9.301029995663981	(Meta-All, NSCLP)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q24.21	8	128933908	NR	LINC01263 - LINC00977	101927774	728724		      505.99	      282.56	rs987525-A	rs987525	0	987525	Intergenic	1	NR	1E-26	26	(Meta-All, NSCLP)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	10q25.3	10	117068049	NR	KIAA1598			57698			rs7078160-A	rs7078160	0	7078160	intron	0	NR	6E-10	9.221848749616356	(Meta-All, NSCLP)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	13q31.1	13	80118676	SPRY2	LINC01080 - SPRY2	101515984	10253		       92.01	      217.30	rs8001641-A	rs8001641	0	8001641	Intergenic	1	NR	9E-11	10.04575749056067	(Meta-All, NSCLP)	   1.35	[1.141-1.607] 	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q24.21	8	128933908	NR	LINC01263 - LINC00977	101927774	728724		      505.99	      282.56	rs987525-A	rs987525	0	987525	Intergenic	1	NR	2E-11	10.69897000433602	(Meta-All, NSCLO)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	17p13.1	17	9040612	NR	NTN1			9423			rs8076457-?	rs8076457	0	8076457	intron	0	NR	2E-7	6.698970004336019	(Meta-ALL, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	2p24.2	2	16534140	NR	MYCN - FAM49A	4613	81553		      587.13	       15.32	rs4441471-?	rs4441471	0	4441471	Intergenic	1	NR	8E-7	6.096910013008056	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	15q13.3	15	32758222	NR	GREM1 - FMN1	26585	342184		       23.55	        7.32	rs1258763-?	rs1258763	0	1258763	Intergenic	1	NR	2E-6	5.698970004336018	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	12q15	12	69661130	NR	BEST3			144453			rs1373453-?	rs1373453	0	1373453	intron	0	NR	2E-6	5.698970004336018	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q21.11	8	76595378	NR	LINC01111 - MRPL9P1	101926978	137290		       71.02	        7.46	rs7846606-?	rs7846606	0	7846606	Intergenic	1	NR	7E-6	5.154901959985742	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	8q21.13	8	82016363	NR	HNRNPA1P36 - HNRNPA1P4	100128836	389674		      207.43	      274.55	rs7820074-?	rs7820074	0	7820074	Intergenic	1	NR	9E-6	5.045757490560675	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	9q22.2	9	89421512	NR	SEMA4D			10507			rs4132699-?	rs4132699	0	4132699	intron	0	NR	5E-7	6.30102999566398	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	13q32.3	13	99986138	NR	ZIC2			7546			rs13542-?	rs13542	0	13542	UTR-3	0	NR	1E-6	5.999999999999999	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	3q12.1	3	99873752	NR	FILIP1L;CMSS1			11259;84319			rs813218-?	rs813218	0	813218	intron;intron	0	NR	1E-6	5.999999999999999	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	2q35	2	219804017	NR	RPL23P4 - MIR4268	100270961	100422959		      105.80	      102.49	rs3815854-?	rs3815854	0	3815854	Intergenic	1	NR	7E-6	5.154901959985742	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	3p11.1	3	89485227	NR	EPHA3 - PROSP	2042	5628		        3.09	      715.88	rs7632427-?	rs7632427	0	7632427	Intergenic	1	NR	4E-8	7.397940008672037	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	5q14.1	5	81359147	NR	ACOT12			134526			rs4703516-?	rs4703516	0	4703516	intron	0	NR	3E-6	5.522878745280337	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	11q23.3	11	115269833	NR	CADM1			23705			rs7950069-?	rs7950069	0	7950069	intron	0	NR	5E-6	5.301029995663981	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/09/2012	22863734	Ludwig KU	08/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22863734	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	22q13.31	22	44754779	NR	ARHGAP8;PRR5-ARHGAP8			23779;553158			rs5765956-?	rs5765956	0	5765956	intron;intron	0	NR	2E-6	5.698970004336018	(Meta-All, NSCL/P)	NR	NR	NR [497,084]	N
10/13/2012	22864923	Yang C	08/03/2012	Immunogenetics	http://www.ncbi.nlm.nih.gov/pubmed/22864923	Genome-wide association study identifies TNFSF13 as a susceptibility gene for IgA in a South Chinese population in smokers.	IgA levels	1,999 Han Chinese ancestry males	1,496 East Asian ancestry males	17p13.1	17	7559652	TNFSF13	TNFSF13;TNFSF12-TNFSF13			8741;407977			rs3803800-?	rs3803800	0	3803800	missense;missense	0	NR	3E-7	6.522878745280337		NR	NR	Illumina [1,940,243] (imputed)	N
09/25/2012	22843789	Baldwin RM	07/27/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22843789	A genome-wide association study identifies novel loci for paclitaxel-induced sensory peripheral neuropathy in CALGB 40101.	Paclitaxel-induced neuropathy	855 European ancestry breast cancer cases	154 European ancestry breast cancer cases, 117 African American breast cancer cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [521,600]	N
09/18/2012	22843499	Boraska V	07/27/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843499	Genome-wide meta-analysis of common variant differences between men and women.	Sex ratio at birth	61,094 European ancestry females, 53,769 European ancestry males	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix & Illumina [2,623,828] (imputed)	N
09/26/2012	22843504	Anney R	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843504	Individual common variants exert weak effects on the risk for autism spectrum disorderspi.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	2q33.3	2	205221447	PARD3B	PARD3B			117583			rs4675502-?	rs4675502	0	4675502	intron	0	NR	4E-7	6.397940008672037	(Strict, all)	   1.28	[1.16-1.41] 	Illumina [947,233]	N
09/26/2012	22843504	Anney R	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843504	Individual common variants exert weak effects on the risk for autism spectrum disorderspi.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	5q34	5	162656512	Intergenic	GABRG2 - ARL2BPP5	2566	100874420		      500.97	      105.32	rs7711337-?	rs7711337	0	7711337	Intergenic	1	NR	8E-7	6.096910013008056	(Spectrum, all)	   1.22	[1.12-1.32] 	Illumina [947,233]	N
09/26/2012	22843504	Anney R	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843504	Individual common variants exert weak effects on the risk for autism spectrum disorderspi.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	8q13.3	8	71649507	Intergenic	TRAPPC2P2 - MSC	27196	9242		      200.27	      192.04	rs7834018-?	rs7834018	0	7834018	Intergenic	1	NR	8E-7	6.096910013008056	(Strict, EA)	   1.56	[1.3-1.89] 	Illumina [947,233]	N
09/26/2012	22843504	Anney R	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843504	Individual common variants exert weak effects on the risk for autism spectrum disorderspi.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	16q24.1	16	84180078	TAF1C	TAF1C			9013			rs4150167-?	rs4150167	0	4150167	missense	0	NR	3E-7	6.522878745280337	(Spectrum, all)	   1.96	[1.52-2.56] 	Illumina [947,233]	N
09/26/2012	22837380	Fischer A	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837380	A novel sarcoidosis risk locus for Europeans on chromosome 11q13.1.	Sarcoidosis	564 European ancestry cases, 1,575 European ancestry controls	3,080 European ancestry cases, 3,659 European ancestry controls	11q13.1	11	64340005	CCDC88B, KCNK4, PRDX5, BAD, GPR137	CCDC88B;LOC102723878			283234;102723878			rs479777-?	rs479777	0	479777	nearGene-5;ncRNA	0	0.64	3E-18	17.52287874528034		   1.18	[1.18-1.43] 	Affymetrix [1,294,967] (imputed)	N
09/26/2012	22841784	Patin E	07/26/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/22841784	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	3q23	3	141744456	RNF7	RNF7			9616			rs16851720-C	rs16851720	0	16851720	intron	0	0.19	9E-9	8.045757490560675	(QTF)	NR	NR	Illumina [780,650] (imputed)	N
09/26/2012	22841784	Patin E	07/26/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/22841784	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	2q13	2	112013193	MERTK	MERTK			10461			rs4374383-A	rs4374383	0	4374383	intron	0	0.42	1E-9	8.999999999999998	(Duration F0-1/F3-4, transfused)	NR	NR	Illumina [780,650] (imputed)	N
09/26/2012	22841784	Patin E	07/26/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/22841784	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	6p21.31	6	35534425	TULP1	TRNAI25			100189401			rs9380516-T	rs9380516	0	9380516		0	0.17	5E-7	6.30102999566398	(Duration F0-1/F3-4, male)	NR	NR	Illumina [780,650] (imputed)	N
09/26/2012	22841784	Patin E	07/26/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/22841784	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	12q23.3	12	104028030	GLT8D2	GLT8D2			83468			rs2629751-G	rs2629751	0	2629751	intron	0	0.31	1E-7	7	(Binary F0/F4)	NR	NR	Illumina [780,650] (imputed)	N
09/26/2012	22841784	Patin E	07/26/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/22841784	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	9q22.2	9	90419249	LOC340515	LOC101927873			101927873			rs883924-A	rs883924	0	883924	intron	0	0.26	2E-6	5.698970004336018	(Duration F0-1/F3-4,>20yo)	NR	NR	Illumina [780,650] (imputed)	N
09/26/2012	22841784	Patin E	07/26/2012	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/22841784	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	7p12.3	7	47740371	PKD1L1	C7orf65 - LINC00525	401335	84847		       78.72	       21.11	rs7800244-T	rs7800244	0	7800244	Intergenic	1	0.18	3E-6	5.522878745280337	(Binary F0-1/F3-4)	NR	NR	Illumina [780,650] (imputed)	N
09/21/2012	22843503	Qi Q	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843503	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels 	3,248 European ancestry individuals	659 European ancestry individuals	1p32.2	1	56777781	C1orf168	C1orf168			199920			rs17372114-T	rs17372114	0	17372114	intron	0	0.59	5E-7	6.30102999566398		    .04	[0.020-0.060] unit increase	Affymetrix & Illumina [2,543,887] (imputed)	N
09/21/2012	22843503	Qi Q	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843503	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels 	3,248 European ancestry individuals	659 European ancestry individuals	1p31.1	1	74769633	TYW3, CRYZ	TYW3 - LHX8	127253	431707		        2.96	      358.80	rs3931020-C	rs3931020	0	3931020	Intergenic	1	0.69	6E-12	11.22184874961635		    .05	[0.030-0.070] unit increase	Affymetrix & Illumina [2,543,887] (imputed)	N
09/21/2012	22843503	Qi Q	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843503	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels 	3,248 European ancestry individuals	659 European ancestry individuals	4q26	4	115275150	NDST4	MRPS33P3 - RPF2P2	359776	100128462		      131.85	      353.66	rs13144478-T	rs13144478	0	13144478	Intergenic	1	0.09	6E-18	17.22184874961635		    .13	[0.091-0.169] unit increase	Affymetrix & Illumina [2,543,887] (imputed)	N
09/21/2012	22843503	Qi Q	07/26/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22843503	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels 	3,248 European ancestry individuals	659 European ancestry individuals	19p13.2	19	7669625	RETN	RETN			56729			rs3745367-A	rs3745367	0	3745367	intron	0	0.23	3E-6	5.522878745280337		    .04	[0.020-0.060] unit increase	Affymetrix & Illumina [2,543,887] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	3p26.1	3	4591808	ITPR1	ITPR1			3708			rs2322734-?	rs2322734	0	2322734	intron	0	0.04	8E-6	5.096910013008055	(FEV1 65%)	   1.45	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	9p23	9	9910123	PTPRD	PTPRD			5789			rs10759102-?	rs10759102	0	10759102	intron	0	0.67	1E-6	5.999999999999999	(FEV1 65%)	   1.23	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	13q12.12	13	24221351	SPATA13	SPATA13			221178			rs715921-A	rs715921	0	715921	intron	0	0.31	8E-7	6.096910013008056	(No asthma)	   1.20	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	6p22.3	6	24306159	DCDC2	DCDC2			51473			rs16889038-?	rs16889038	0	16889038	intron	0	0.08	8E-7	6.096910013008056	(FEV1 65%)	   1.39	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	3p24.2	3	25496826	RARB	RARB			5915			rs1997352-?	rs1997352	0	1997352	intron	0	0.74	9E-7	6.045757490560675	(All)	   1.19	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	21q21.3	21	26344335	CYYR1	MARCKSP1 - CYYR1-AS1	4083	100996571		      108.46	       61.61	rs9975851-T	rs9975851	0	9975851	Intergenic	1	0.57	4E-6	5.397940008672037	(No asthma)	   1.17	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	7p15.1	7	28392857	CREB5	CREB5			9586			rs7799265-?	rs7799265	0	7799265	intron	0	0.05	2E-6	5.698970004336018	(FEV1 65%)	   1.54	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	13q14.3	13	52920559	PCDH8	PCDH8 - OLFM4	5100	10562		       71.92	      108.18	rs9536318-?	rs9536318	0	9536318	Intergenic	1	0.17	8E-7	6.096910013008056	(No asthma)	   1.25	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	1p32.2	1	55894140	PPAP2B	GOT2P1 - RPSAP20	645538	127406		      525.37	      313.33	rs6684428-A	rs6684428	0	6684428	Intergenic	1	0.16	5E-7	6.30102999566398	(Smoker)	   1.23	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	18q22.1	18	64209921	SERPINB8	LOC284294			284294			rs4534959-?	rs4534959	0	4534959	intron	0	0.03	7E-7	6.154901959985743	(FEV1 65%)	   1.72	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	1p31.3	1	68319530	GPR177	COX6B1P7 - TCEB1P18	100133210	100130626		       36.91	       55.79	rs11209261-?	rs11209261	0	11209261	Intergenic	1	0.24	3E-6	5.522878745280337	(FEV1 65%)	   1.23	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q23	15	71387620	THSD4	THSD4			79875			rs2044029-A	rs2044029	0	2044029	intron	0	.4	1E-7	7	(All)	   1.17	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q24.1	15	74424268	SEMA7A	SEMA7A			8482			rs8036030-?	rs8036030	0	8036030	intron	0	0.61	8E-6	5.096910013008055	(No asthma)	   1.18	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q26.1	15	92340610	ST8SIA2	NPM1P5 - ST8SIA2	4874	8128		       53.38	       53.30	rs12905014-?	rs12905014	0	12905014	Intergenic	1	0.05	4E-7	6.397940008672037	(FEV1 65%)	   1.75	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	10q23.33	10	92409040	IDE	MARCH5 - MARK2P9	54708	100507674		       55.08	        9.62	rs2263638-?	rs2263638	0	2263638	Intergenic	1	0.63	3E-6	5.522878745280337	(Never smoker)	   1.28	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	12q24.21	12	114200043	TBX5	GLULP5 - TBX5	100421694	6910		       94.12	      153.89	rs4767234-A	rs4767234	0	4767234	Intergenic	1	0.59	6E-7	6.221848749616355	(Smoker)	   1.17	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	5q32	5	148476770	HTR4	HTR4			3360			rs7733088-?	rs7733088	0	7733088	intron	0	0.62	4E-9	8.397940008672036	(Smoker)	   1.23	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	3q27.2	3	185424069	MAP3K13	MAP3K13			9175			rs7629245-T	rs7629245	0	7629245	intron	0	0.15	9E-6	5.045757490560675	(Smoker)	   1.22	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	2q37.3	2	236613199	CXCR7	ACKR3 - COPS8	57007	10920		       30.84	      472.24	rs7607316-A	rs7607316	0	7607316	Intergenic	1	0.21	3E-6	5.522878745280337	(Never smoker)	   1.29	[NR] 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q25.1	15	78575140	CHRNA5	CHRNA5			1138			rs17486278-?	rs17486278	0	17486278	intron	0	0.34	2E-7	6.698970004336019	(All)	   1.18	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q25.1	15	78523715	AGPHD1	HYKK			123688			rs8031948-T	rs8031948	0	8031948	intron	0	0.35	3E-9	8.522878745280337	(Smokers)	   1.22	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	10q26.11	10	117620145	EMX2	EMX2 - RAB11FIP2	2018	22841		       70.60	      384.77	rs181654-?	rs181654	0	181654	Intergenic	1	0.72	1E-7	7	(no asthma)	    .81	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	4q25	4	108296773	LEF1	LEF1-AS1 - RPSAP34	641518	100270876		      120.34	      111.07	rs13144621-?	rs13144621	0	13144621	Intergenic	1	0.68	1E-6	5.999999999999999	(All)	   1.16	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	7q11.22	7	71923865	CALN1	CALN1			83698			rs11766496-C	rs11766496	0	11766496	intron	0	0.12	2E-6	5.698970004336018	(All)	   1.30	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	6q24.1	6	142432201	GPR126	GPR126			57211			rs1329705-?	rs1329705	0	1329705	intron	0	0.8	3E-6	5.522878745280337	(FEV1 65%)	   1.27	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	4q12	4	56467946	SRP72	SRP72			6731			rs12505749-?	rs12505749	0	12505749	intron	0	0.08	5E-6	5.301029995663981	(All)	   1.27	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	22q12.1	22	26257396	SEZ6L	SEZ6L			23544			rs1207393-?	rs1207393	0	1207393	intron	0	0.64	5E-6	5.301029995663981	(FEV1 65%)	   1.19	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	4q24	4	106079305	MGC16169	TBCK			93627			rs11097912-?	rs11097912	0	11097912	intron	0	0.67	6E-6	5.221848749616356	(smokers)	   1.18	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	18q22.3	18	72559786	CBLN	CBLN2 - HNRNPA1P11	147381	100128044		        7.15	       58.48	rs17086172-?	rs17086172	0	17086172	Intergenic	1	0.06	7E-6	5.154901959985742	(no asthma)	   1.35	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22837378	Wilk JB	07/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22837378	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction 	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	17q25.3	17	77404018	SEPT9	SEPT9			10801			rs892961-?	rs892961	0	892961	intron	0	0.59	9E-6	5.045757490560675	(no asthma)	   1.18	 	Affymetrix & Illumina [up to ~2,500,000] (imputed)	N
09/26/2012	22828495	Brown AA	07/24/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22828495	Genetic variants affecting the neural processing of human facial expressions: evidence using a genome-wide functional imaging approach.	Neural processing (facial expression)	246 European ancestry individuals	85 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [549,640]	N
09/15/2012	22911860	Hernandez DG	07/24/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22911860	Genome wide assessment of young onset Parkinson's disease from Finland.	Parkinson's disease	387 European ancestry cases, 496 European ancestry controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [5,854,841] (imputed)	N
09/20/2012	22823124	Verweij KJ	07/24/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22823124	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NR	13q14.2	13	47324744	GNG5P5	GNG5P5 - NAP1L4P3	100101935	730174		       17.20	      438.82	rs1417205-A	rs1417205	0	1417205	Intergenic	1	0.95	8E-7	6.096910013008056		    .06	 unit decrease	Illumina [~2.4 million] (imputed)	N
09/20/2012	22823124	Verweij KJ	07/24/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22823124	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NR	17p12	17	13159478	Intergenic	ELAC2 - HS3ST3A1	60528	9955		      141.41	      336.21	rs9900808-A	rs9900808	0	9900808	Intergenic	1	0.04	2E-6	5.698970004336018		    .08	 unit increase	Illumina [~2.4 million] (imputed)	N
09/20/2012	22823124	Verweij KJ	07/24/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22823124	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NR	11p15.1	11	21599402	NELL1	RNA5SP337 - ANO5	100873600	203859		      215.49	      593.27	rs1573535-A	rs1573535	0	1573535	Intergenic	1	0.56	4E-6	5.397940008672037		    .03	 unit increase	Illumina [~2.4 million] (imputed)	N
09/20/2012	22823124	Verweij KJ	07/24/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22823124	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NR	17q25.2	17	77001815	MGAT5B	MGAT5B - SNHG20	146664	654434		       51.42	       86.83	rs4789400-A	rs4789400	0	4789400	Intergenic	1	0.08	5E-6	5.301029995663981		    .07	 unit decrease	Illumina [~2.4 million] (imputed)	N
09/20/2012	22823124	Verweij KJ	07/24/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22823124	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NR	6q12	6	68275038	RP11-406O16.1	LOC101928280			101928280			rs10455657-T	rs10455657	0	10455657	intron	0	0.81	6E-6	5.221848749616356		    .03	 unit decrease	Illumina [~2.4 million] (imputed)	N
09/20/2012	22823124	Verweij KJ	07/24/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22823124	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NR	6q25.3	6	157968709	SYNJ2	SNX9 - SYNJ2	51429	8871		       23.63	       13.15	rs9458975-T	rs9458975	0	9458975	Intergenic	1	0.45	7E-6	5.154901959985742		    .03	 unit increase	Illumina [~2.4 million] (imputed)	N
09/26/2012	22821403	Ellinghaus D	07/23/2012	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22821403	Genome-wide association analysis in primary sclerosing cholangitis and ulcerative colitis identifies risk loci at GPR35 and TCF4.	Sclerosing cholangitis and ulcerative colitis (combined)	Up to 389 European ancestry primary sclerosing cholangitis cases, 987 European ancestry ulcerative colitis cases, 2,968 European ancestry controls	1,012 European ancestry primary sclerosing cholangitis cases, 4,444 European ancestry ulcerative colitis cases, 11,659 European ancestry controls	2q37.3	2	240624322	GPR35	GPR35			2859			rs4676410-A	rs4676410	0	4676410	intron	0	0.20	2E-9	8.698970004336019	(PSC)	   1.38	[1.24-1.53] 	Affymetrix [up to 1,279,891] (imputed)	N
09/26/2012	22821403	Ellinghaus D	07/23/2012	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22821403	Genome-wide association analysis in primary sclerosing cholangitis and ulcerative colitis identifies risk loci at GPR35 and TCF4.	Sclerosing cholangitis and ulcerative colitis (combined)	Up to 389 European ancestry primary sclerosing cholangitis cases, 987 European ancestry ulcerative colitis cases, 2,968 European ancestry controls	1,012 European ancestry primary sclerosing cholangitis cases, 4,444 European ancestry ulcerative colitis cases, 11,659 European ancestry controls	18q21.2	18	55539976	TCF4	TCF4			6925			rs1452787-A	rs1452787	0	1452787	intron	0	0.72	3E-8	7.522878745280337	(PSC)	   1.33	[1.20-1.47] 	Affymetrix [up to 1,279,891] (imputed)	N
09/18/2012	22814818	Hoehn R	07/20/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22814818	Population-based meta-analysis in Caucasians confirms association with COL5A1 and ZNF469 but not COL8A2 with central corneal thickness.	Central corneal thickness	3,931 European ancestry individuals	1,418 European ancestry individuals	16q24.2	16	88298034	ZNF469	BANP - ZNF469	54971	84627		      220.72	      129.44	rs9938149-A	rs9938149	0	9938149	Intergenic	1	0.62	1E-12	12		    .16	[0.12-0.20] SD increase	Affymetrix [NR] (imputed)	N
09/18/2012	22814818	Hoehn R	07/20/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22814818	Population-based meta-analysis in Caucasians confirms association with COL5A1 and ZNF469 but not COL8A2 with central corneal thickness.	Central corneal thickness	3,931 European ancestry individuals	1,418 European ancestry individuals	9q34.3	9	134548366	RXRA, COL5A1	MIR4669 - COL5A1	100616236	1289		      168.89	       93.44	rs3132306-T	rs3132306	0	3132306	Intergenic	1	0.66	3E-10	9.522878745280336		    .15	[0.11-0.19] SD increase	Affymetrix [NR] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	1p13.3	1	107003753	PRMT6	NDE1P1 - PRMT6	100422372	55170		      185.41	       52.89	rs17496332-A	rs17496332	0	17496332	Intergenic	1	0.67	1E-11	11	(Men + Women)	    .03	[0.020-0.036] nmol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p23.3	2	27519736	GCKR	GCKR			2646			rs780093-T	rs780093	0	780093	intron	0	0.40	2E-16	15.69897000433602	(Men + Women)	    .03	[0.024-0.040] nmol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	8q21.13	8	80549739	ZBTB10	ZBTB10 - RPSAP47	65986	389672		       23.47	        9.06	rs440837-A	rs440837	0	440837	Intergenic	1	0.78	3E-9	8.522878745280337	(Men + Women)	    .03	[0.019-0.037] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	10q21.3	10	63379150	JMJD1C	JMJD1C			221037			rs7910927-T	rs7910927	0	7910927	intron	0	0.51	6E-35	34.22184874961635	(Men + Women)	    .05	[0.040-0.056] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	12p12.1	12	21178615	SLCO1B1	SLCO1B1			10599			rs4149056-T	rs4149056	0	4149056	missense	0	0.82	2E-8	7.698970004336018	(Men + Women)	    .03	[0.019-0.039] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	15q26.2	15	96165062	NR2F2	LINC00924 - NR2F2-AS1	145820	644192		      657.22	      101.32	rs8023580-T	rs8023580	0	8023580	Intergenic	1	0.72	8E-12	11.09691001300806	(Men + Women)	    .03	[0.021-0.039] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7618597	SHBG	SHBG			6462			rs12150660-T	rs12150660	0	12150660	intron	0	0.24	2E-106	105.698970004336	(Men + Women)	    .10	[0.094-0.112] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17q21.33	17	49368389	ZNF652	LOC102724596			102724596			rs2411984-A	rs2411984	0	2411984	intron	0	0.28	4E-14	13.39794000867204	(Men + Women)	    .03	[0.024-0.042] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	Xq23	23	110576840	TDGF3	TDGF1P3 - CHRDL1	6998	91851		       53.82	       97.02	rs1573036-T	rs1573036	0	1573036	Intergenic	1	0.031	4E-14	13.39794000867204	(Men + Women)	    .03	[0.021-0.035] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p16.3	2	48419260	LHCGR	FOXN2 - PPP1R21	3344	129285		       39.97	       21.51	rs10454142-T	rs10454142	0	10454142	Intergenic	1	0.69	1E-7	7	(Men + Women)	    .02	[0.014-0.032] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	7q21.3	7	98364050	BAIAP2L1	BAIAP2L1			55971			rs3779195-A	rs3779195	0	3779195	intron	0	0.17	3E-8	7.522878745280337	(Men + Women)	    .03	[0.018-0.038] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	4q13.2	4	68726064	UGT2B15	UGT2B15 - UGT2B10	7366	7365		       55.29	       89.93	rs293428-A	rs293428	0	293428	Intergenic	1	0.69	6E-6	5.221848749616356	(Men + Women)	    .02	[0.011-0.027] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	1p13.3	1	107003753	PRMT6	NDE1P1 - PRMT6	100422372	55170		      185.41	       52.89	rs17496332-A	rs17496332	0	17496332	Intergenic	1	0.67	2E-7	6.698970004336019	(Men)	    .03	[0.017-0.037] nmol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p23.3	2	27519736	GCKR	GCKR			2646			rs780093-T	rs780093	0	780093	intron	0	0.40	7E-8	7.154901959985742	(Men)	    .03	[0.016-0.036] nmol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p23.3	2	27519736	GCKR	GCKR			2646			rs780093-T	rs780093	0	780093	intron	0	0.40	9E-11	10.04575749056067	(Women)	    .04	[0.029-0.053] nmol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	8q21.13	8	80549739	ZBTB10	ZBTB10 - RPSAP47	65986	389672		       23.47	        9.06	rs440837-A	rs440837	0	440837	Intergenic	1	0.78	7E-8	7.154901959985742	(Women)	    .04	[0.027-0.057] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	10q21.3	10	63379150	JMJD1C	JMJD1C			221037			rs7910927-T	rs7910927	0	7910927	intron	0	0.51	1E-25	25	(Men)	    .05	[0.041-0.059] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	10q21.3	10	63379150	JMJD1C	JMJD1C			221037			rs7910927-T	rs7910927	0	7910927	intron	0	0.51	2E-13	12.69897000433602	(Women)	    .05	[0.034-0.058] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	15q26.2	15	96165062	NR2F2	LINC00924 - NR2F2-AS1	145820	644192		      657.22	      101.32	rs8023580-T	rs8023580	0	8023580	Intergenic	1	0.72	5E-6	5.301029995663981	(Men)	    .03	[0.014-0.036] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	15q26.2	15	96165062	NR2F2	LINC00924 - NR2F2-AS1	145820	644192		      657.22	      101.32	rs8023580-T	rs8023580	0	8023580	Intergenic	1	0.72	8E-8	7.096910013008055	(Women)	    .04	[0.024-0.052] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7618597	SHBG	SHBG			6462			rs12150660-T	rs12150660	0	12150660	intron	0	0.24	4E-80	79.39794000867202	(Men)	    .11	[0.099-0.121] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7618597	SHBG	SHBG			6462			rs12150660-T	rs12150660	0	12150660	intron	0	0.24	6E-30	29.22184874961635	(Women)	    .09	[0.071-0.101] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17q21.33	17	49368389	ZNF652	LOC102724596			102724596			rs2411984-A	rs2411984	0	2411984	intron	0	0.28	2E-10	9.698970004336017	(Men)	    .03	[0.023-0.045] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	Xq23	23	110576840	TDGF3	TDGF1P3 - CHRDL1	6998	91851		       53.82	       97.02	rs1573036-T	rs1573036	0	1573036	Intergenic	1	0.031	3E-16	15.52287874528034	(Men)	    .04	[0.027-0.043] umol/L increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	4q13.2	4	68726064	UGT2B15	UGT2B15 - UGT2B10	7366	7365		       55.29	       89.93	rs293428-A	rs293428	0	293428	Intergenic	1	0.69	3E-8	7.522878745280337	(Men)	    .03	[0.019-0.039] umol/L decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7618597	SHBG	SHBG			6462			rs12150660-T	rs12150660	0	12150660	intron	0	0.24	2E-55	54.69897000433601	(Men + Women, Conditional)	    .08	[0.072-0.092] unit increase	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7631360	SHBG	SHBG			6462			rs6258-T	rs6258	0	6258	missense	0	0.02	3E-46	45.52287874528034	(Men + Women, Conditional)	    .27	[0.24-0.31] unit decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7642403	SHBG	SAT2 - ATP1B2	112483	482		       14.53	        8.53	rs1641537-T	rs1641537	0	1641537	Intergenic	1	0.14	1E-24	24	(Men + Women, Conditional)	    .06	[0.052-0.076] unit decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7674797	SHBG	TP53			7157			rs1625895-T	rs1625895	0	1625895	intron	0	0.12	2E-21	20.69897000433602	(Men + Women, Conditional)	    .12	[0.11-0.13] unit decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/25/2012	22829776	Coviello AD	07/19/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22829776	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	17	7581494	SHBG	CD68			968			rs9901675-A	rs9901675	0	9901675	missense	0	0.05	1E-7	7	(Men + Women, Conditional)	    .06	[0.037-0.077] unit decrease	Affmyetrix & Illumina [2,543,887] (imputed)	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6p21.32	6	33102116	HLA-DP, COL11A2	TRNAI25			100189401			rs3117242-?	rs3117242	0	3117242		0	NR	1E-71	71		   3.67	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xp22.32	23	5266661	Intergenic	RPL24P9 - NLGN4X	100129487	57502		     1313.06	      623.37	rs6638512-?	rs6638512	0	6638512	Intergenic	1	NR	2E-25	24.69897000433602		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq24	23	120733621	Intergenic	C1GALT1C1 - PA2G4P1	29071	389884		      103.47	      134.71	rs1972809-?	rs1972809	0	1972809	Intergenic	1	NR	1E-24	24		   1.28	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq21.31			CPXCR1	 - 						rs5941160-?	rs5941160					NR	2E-20			NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq21.31	23	90549128	TGIF2LX	UBE2V1P9 - PABPC5-AS1	100131981	102724167		      259.28	      865.78	rs2755459-?	rs2755459	0	2755459	Intergenic	1	NR	9E-14	13.04575749056067		   1.67	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	14q32.13	14	94397299	SERPINA11, SERPINA1	SERPINA1 - SERPINA11	5265	256394		        6.61	       45.16	rs7151526-?	rs7151526	0	7151526	Intergenic	1	NR	2E-9	8.698970004336019		   1.69	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq27.2	23	142272785	MAGEC2	MAGEC2 - SPANXN4	51438	441525		       67.50	      753.13	rs5954596-?	rs5954596	0	5954596	Intergenic	1	NR	5E-9	8.301029995663981		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq21.31	23	91557719	PABPC5, PCDH11X, PCDH11Y	PABPC5 - SERBP1P4	140886	100132591		      119.14	        2.72	rs6618677-?	rs6618677	0	6618677	Intergenic	1	NR	4E-8	7.397940008672037		   1.43	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq28	23	155005499	F8	F8			2157			rs17281398-?	rs17281398	0	17281398	intron	0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	6q22.33	6	129710348	ARHGAP18	ARHGAP18			93663			rs17057678-?	rs17057678	0	17057678	nearGene-5	0	NR	6E-7	6.221848749616355		   1.25	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xp22.33	23	3492628	MXRA5	ASS1P4 - PRKX	449	5613		      124.02	      111.72	rs7059886-?	rs7059886	0	7059886	Intergenic	1	NR	1E-6	5.999999999999999		   1.16	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	13q14.11	13	44480955	TSC22D1	TSC22D1			8848			rs17065868-?	rs17065868	0	17065868	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	13q12.3	13	30311086	KATNAL1	PRDX2P1 - LINC00426	359844	100188949		       14.10	       29.18	rs185694-?	rs185694	0	185694	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	18q21.31	18	57960608	Intergenic	RSL24D1P11 - HMGN1P30	284288	100132992		      121.57	       57.05	rs11875185-?	rs11875185	0	11875185	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	10p11.21	10	35771381	FZD8	RPL7P37 - PCAT5	439954	102578074		       73.28	        6.92	rs11010290-?	rs11010290	0	11010290	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	17q21.32	17	46871734	WNT9B	WNT9B			7484			rs11079740-?	rs11079740	0	11079740	intron	0	NR	9E-6	5.045757490560675		   1.10	[NR] 	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	Xq27.3	23	147961254	FMR1, FMR1NB	FMR1 - FMR1NB	2332	158521		       10.13	       20.08	rs5904818-?	rs5904818	0	5904818	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Affymetrix [NR]	N
09/27/2012	22808956	Lyons PA	07/19/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22808956	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis 	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	18p11.31	18	3328748	MRLC2	MYL12B - RPL31P59	103910	100271480		       50.46	       49.18	rs1623523-?	rs1623523	0	1623523	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [NR]	N
11/22/2012	23055271	Gregersen PK	07/16/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23055271	Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis 	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-A	rs2476601	0	2476601	missense;intron	0	0.11	8E-10	9.096910013008054		   1.71	[1.44-2.02] 	Illumina [274,256]	N
11/22/2012	23055271	Gregersen PK	07/16/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23055271	Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis 	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	5q33.1	5	151070675	TNIP1	TNIP1			10318			rs4958881-G	rs4958881	0	4958881	intron	0	0.09	3E-10	9.522878745280336		   1.73	[1.46-2.06] 	Illumina [274,256]	N
11/22/2012	23055271	Gregersen PK	07/16/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23055271	Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis 	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	2p16.1	2	58809781	NR	LINC01122			400955			rs6719884-A	rs6719884	0	6719884	intron	0	0.40	3E-6	5.522878745280337		   1.35	[1.19-1.52] 	Illumina [274,256]	N
11/22/2012	23055271	Gregersen PK	07/16/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23055271	Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis 	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	2p16.1	2	58809781	NR	LINC01122			400955			rs6850606-A	rs6719884	0	6719884	intron	0	0.48	3E-6	5.522878745280337		   1.35	[1.19-1.53] 	Illumina [274,256]	N
11/22/2012	23055271	Gregersen PK	07/16/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23055271	Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis 	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	6p21.33	6	31090563	NR	TRNAI25			100189401			rs3130544-A	rs3130544	0	3130544		0	0.13	2E-90	89.698970004336		   5.64	[4.77-6.67] 	Illumina [274,256]	N
11/22/2012	23055271	Gregersen PK	07/16/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/23055271	Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis 	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	15q13.3	15	31171175	NR	MIR211 - KLF13	406993	51621		      106.03	      155.71	rs7169523-G	rs7169523	0	7169523	Intergenic	1	0.22	2E-6	5.698970004336018		   1.40	[1.22-1.60] 	Illumina [274,256]	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	1q22	1	155225189	MTX1, GBA	GBAP1			2630			rs2049805-T	rs2049805	0	2049805	intron	0	0.17	2E-12	11.69897000433602		    .01	[0.0052-0.0092] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	2q13	2	113221363	PAX8	PAX8			7849			rs11123170-G	rs11123170	0	11123170	intron	0	0.35	3E-10	9.522878745280336		    .01	[0.0035-0.0067] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	3q26.2	3	169432844	MECOM	MECOM			2122			rs16853722-C	rs16853722	0	16853722	intron	0	0.29	3E-14	13.52287874528034		    .01	[0.0048-0.0080] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	7p22.3	7	1234209	UNCX	UNCX			340260			rs10275044-T	rs10275044	0	10275044	intron	0	0.34	4E-9	8.397940008672036		    .01	[0.0046-0.0093] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	11p14.1	11	30747131	MPPED2l, DCDC5	LOC101928338			101928338			rs10767873-C	rs10767873	0	10767873	intron	0	0.69	5E-16	15.30102999566398		    .01	[0.0052-0.0084] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-A	rs2074356	0	2074356	intron	0	0.23	2E-9	8.698970004336019		    .01	[0.0042-0.0086] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	15q21.3	15	53615751	WDR72	WDR72			256764			rs17730281-G	rs17730281	0	17730281	missense	0	0.58	3E-11	10.52287874528034		    .01	[0.0035-0.0067] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	17q23.2	17	61161860	BCAS3	BCAS3			54828			rs11868441-G	rs11868441	0	11868441	intron	0	0.75	2E-9	8.698970004336019		    .01	[0.0039-0.0079] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	20q13.32	20	58894018	GNAS	GNAS			2778			rs6026584-T	rs6026584	0	6026584	intron	0	0.32	9E-9	8.045757490560675		    .01	[0.0034-0.0070] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	3p14.1	3	66748526	LRIG1, KBTBD8	RPL21P41 - KBTBD8	100271159	84541		      110.98	      249.78	rs13069000-G	rs13069000	0	13069000	Intergenic	1	0.17	1E-19	19		    .01	[0.0073-0.0113] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	3q27.3	3	187995930	BCL6, LPP	BCL6 - LPP-AS2	604	339929		      250.21	      155.28	rs10937329-T	rs10937329	0	10937329	Intergenic	1	0.69	9E-30	29.04575749056067		    .01	[0.0082-0.0118] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	5q13.2	5	73136209	TMEM171, TMEM174	TMEM171 - TMEM174	134285	134288		        4.27	       32.04	rs17663555-G	rs17663555	0	17663555	Intergenic	1	0.34	2E-6	5.698970004336018		    .00	[0.0024-0.0056] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	6p12.3	6	50818295	TFAP2B	TFAP2B			7021			rs2206271-A	rs2206271	0	2206271	nearGene-5	0	0.32	2E-7	6.698970004336019		    .01	[0.0035-0.0075] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	6q22.33	6	127114919	RSPO3	RPS4XP9 - RSPO3	442257	84870		      431.01	        3.78	rs1936800-T	rs1936800	0	1936800	Intergenic	1	0.50	1E-11	11		    .01	[0.0036-0.0068] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	18q12.3	18	45607165	SLC14A2	SLC14A2			8170			rs7227483-G	rs7227483	0	7227483	intron	0	0.80	7E-18	17.15490195998574		    .01	[0.0063-0.0103] mg/dl increase	Affymetrix & Illumina [2,281,523] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6p21.33	6	31472892	MHC	HCG26			352961			rs3828890-G	rs3828890	0	3828890	nearGene-3	0	0.11	1E-9	8.999999999999998		    .01	[0.0054-0.0105] ml/min/1.73m2 decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	7p22.3	7	1245559	UNCX	UNCX - MICALL2	340260	79778		        8.58	      188.80	rs10277115-T	rs10277115	0	10277115	Intergenic	1	0.35	1E-10	10		    .01	[0.0040-0.0076] ml/min/1.73m2 decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	11p14.1	11	30727543	MPPED2, DCDC5	MPPED2 - DCDC5	744	100506627		      140.83	      136.06	rs963837-T	rs963837	0	963837	Intergenic	1	0.64	1E-9	8.999999999999998		    .00	[0.0029-0.0057] ml/min/1.73m2 decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	4q21.1	4	76490987	SHROOM3	SHROOM3			57619			rs13146355-A	rs13146355	0	13146355	intron	0	0.21	7E-11	10.15490195998574		    .01	[0.0035-0.0067] ml/min/1.73m2  decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	5q35.3	5	177367190	RGS14	RGS14			10636			rs12654812-A	rs12654812	0	12654812	intron	0	0.36	2E-7	6.698970004336019		    .00	[0.0026-0.0058] ml/min/1.73m2 decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6q16.3	6	101226414	GRIK2	ASCC3 - GRIK2	10973	2898		      345.04	      167.29	rs2797369-T	rs2797369	0	2797369	Intergenic	1	0.66	1E-7	7		    .00	[0.0026-0.0058] ml/min/1.73m2  decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	6q25.2	6	154665530	CNKSR3, RBM16	RPL31P29 - SCAF8	100270990	22828		       59.60	       67.85	rs9397738-G	rs9397738	0	9397738	Intergenic	1	0.22	5E-6	5.301029995663981		    .00	[0.0021-0.0057] ml/min/1.73m2 decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	15q21.3	15	53650731	WDR72	WDR72			256764			rs17730436-T	rs17730436	0	17730436	intron	0	0.60	6E-13	12.22184874961636		    .01	[0.0039-0.0071] ml/min/1.73m2  decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	16p12.3	16	20389517	UMOD	PDILT			204474			rs11864909-C	rs11864909	0	11864909	intron	0	0.81	4E-10	9.397940008672037		    .01	[0.0039-0.0075] ml/min/1.73m2 decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	17q23.2	17	61379228	BCAS3	BCAS3			54828			rs9895661-C	rs9895661	0	9895661	intron	0	0.52	5E-11	10.30102999566398		    .01	[0.0035-0.0067] ml/min/1.73m2 decrease	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	11p14.1	11	30727543	MPPED2, DCDC5	MPPED2 - DCDC5	744	100506627		      140.83	      136.06	rs963837-T	rs963837	0	963837	Intergenic	1	0.64	3E-9	8.522878745280337		    .00	[0.0025-0.0049] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	6p21.33	6	31472892	MHC	HCG26			352961			rs3828890-G	rs3828890	0	3828890	nearGene-3	0	0.11	3E-9	8.522878745280337		    .01	[0.0046-0.0092] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	7p22.3	7	1245559	UNCX	UNCX - MICALL2	340260	79778		        8.58	      188.80	rs10277115-T	rs10277115	0	10277115	Intergenic	1	0.35	5E-11	10.30102999566398		    .01	[0.0036-0.0068] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-A	rs671	0	671	missense	0	0.27	3E-10	9.522878745280336		    .00	[0.0031-0.0059] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	4q21.1	4	76490987	SHROOM3	SHROOM3			57619			rs13146355-A	rs13146355	0	13146355	intron	0	0.21	9E-12	11.04575749056067		    .00	[0.0033-0.0061] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	5q35.3	5	177367190	RGS14	RGS14			10636			rs12654812-A	rs12654812	0	12654812	intron	0	0.36	5E-7	6.30102999566398		    .00	[0.0022-0.0050] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	15q21.3	15	53650731	WDR72	WDR72			256764			rs17730436-T	rs17730436	0	17730436	intron	0	0.60	1E-13	13		    .01	[0.0036-0.0064] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	16p12.3	16	20389517	UMOD	PDILT			204474			rs11864909-C	rs11864909	0	11864909	intron	0	0.81	1E-10	10		    .01	[0.0036-0.0068] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	17q23.2	17	61379228	BCAS3	BCAS3			54828			rs9895661-C	rs9895661	0	9895661	intron	0	0.52	7E-11	10.15490195998574		    .00	[0.0031-0.0059] mg/dl increase	Affymetrix & Illumina [2,353,587] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	16q23.2	16	79612092	MAF	MAF - DYNLRB2	4094	83657		       11.37	      928.87	rs889472-C	rs889472	0	889472	Intergenic	1	0.57	1E-9	8.999999999999998		    .07	[0.048-0.094] mg/dl increase	Affymetrix & Illumina [2,278,301] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	4p16.1	4	9993558	SLC2A9	SLC2A9			56606			rs3775948-C	rs3775948	0	3775948	intron	0	0.59	2E-65	64.69897000433602		    .18	[0.16-0.20] mg/dl increase	Affymetrix & Illumina [2,278,301] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	4q22.1	4	88038770	ABCG2	PKD2			5311			rs2725220-C	rs2725220	0	2725220	intron	0	0.32	4E-30	29.39794000867203		    .14	[0.11-0.16] mg/dl increase	Affymetrix & Illumina [2,278,301] (imputed)	N
09/18/2012	22797727	Okada Y	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797727	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	11q13.1	11	64696613	SLC22A12	NRXN2			9379			rs504915-T	rs504915	0	504915	intron	0	0.82	3E-63	62.52287874528033		    .23	[0.20-0.25] mg/dl increase	Affymetrix & Illumina [2,278,301] (imputed)	N
09/20/2012	22797724	Shiraishi K	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797724	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	5p15.33	5	1287079	TERT	TERT			7015			rs2853677-C	rs2853677	0	2853677	intron	0	0.30	3E-40	39.52287874528034		   1.41	[1.32-1.50] 	Illumina [538,166]	N
09/20/2012	22797724	Shiraishi K	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797724	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	3q28	3	189665394	TP63	TP63			8626			rs10937405-C	rs10937405	0	10937405	intron	0	0.67	7E-17	16.15490195998574		   1.25	[1.19-1.32] 	Illumina [538,166]	N
09/20/2012	22797724	Shiraishi K	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797724	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	17q24.2	17	67902693	BPTF	BPTF			2186			rs7216064-A	rs7216064	0	7216064	intron	0	0.707	7E-11	10.15490195998574		   1.20	[1.13-1.26] 	Illumina [538,166]	N
09/20/2012	22797724	Shiraishi K	07/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22797724	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	6p21.32	6	32400310	BTNL2	BTNL2			56244			rs3817963-G	rs3817963	0	3817963	intron	0	0.318	3E-10	9.522878745280336		   1.18	[1.12-1.24] 	Illumina [538,166]	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	14q24.2	14	72614360	Intergenic	MIR7843 - DPF3	102465832	8110		       97.46	        1.83	rs2526932-G	rs2526932	0	2526932	Intergenic	1	0.012	6E-13	12.22184874961636	(CRP)	    .28	[NR] mg/dl increase	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	4q24	4	101481058	Intergenic	FLJ20021 - BANK1	90024	55024		      132.18	      309.55	rs6846071-G	rs6846071	0	6846071	Intergenic	1	0.016	1E-11	11	(CRP)	    .22	[NR] mg/dl increase	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	7q31.1	7	111887504	DOCK4	DOCK4			9732			rs10255299-G	rs10255299	0	10255299	intron	0	0.013	7E-11	10.15490195998574	(CRP)	    .24	[NR] mg/dl increase	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	6q16.1	6	98542613	Intergenic	EIF4EBP2P3 - POU3F2	100190924	5454		      362.77	      292.09	rs6904416-C	rs6904416	0	6904416	Intergenic	1	0.019	9E-10	9.045757490560675	(CRP)	    .18	[NR] mg/dl increase	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	2q36.1	2	223072841	Intergenic	KCNE4 - TRNAK39P	23704	100189504		       17.20	      248.76	rs960246-T	rs960246	0	960246	Intergenic	1	0.013	1E-9	8.999999999999998	(CRP)	    .22	[NR] mg/dl increase	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	12q24.31	12	120986153	HNF1A	HNF1A			6927			rs2393791-C	rs2393791	0	2393791	intron	0	0.478	3E-9	8.522878745280337	(CRP)	    .05	[NR] mg/dl decrease	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	2p24.1	2	22074131	Intergenic	TDRD15 - RNA5SP87	100129278	100873320		      936.15	      264.76	rs7600502-G	rs7600502	0	7600502	Intergenic	1	0.053	3E-9	8.522878745280337	(WBC)	    .39	[NR] 10^3/ul decrease	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	17q21.1	17	40010626	Intergenic	PSMD3 - CSF3	5709	1440		       12.67	        4.74	rs8078723-C	rs8078723	0	8078723	Intergenic	1	0.468	3E-9	8.522878745280337	(WBC)	    .16	[NR] 10^3/ul increase	Affymetrix [1,701,735] (imputed)	N
09/20/2012	22788528	Kong M	07/13/2012	Int J Immunogenet	http://www.ncbi.nlm.nih.gov/pubmed/22788528	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NR	21q22.12	21	35477121	LOC100506403	LOC100506403			100506403			rs16993221-A	rs16993221	0	16993221	intron	0	0.034	2E-8	7.698970004336018	(WBC)	    .46	[NR] 10^3/ul decrease	Affymetrix [1,701,735] (imputed)	N
09/12/2012	22791750	Chen G	07/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22791750	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	4q21.3	4	86833266	SLC10A6	SLC10A6			345274			rs10050311-T	rs10050311	0	10050311	intron	0	0.09	8E-6	5.096910013008055	(FI)	    .25	[0.13-0.37] unit decrease	Affymetrix [5,396,838] (imputed)	N
09/12/2012	22791750	Chen G	07/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22791750	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	4q32.3	4	165334552	SC4MOL	MSMO1			6307			rs17046216-A	rs17046216	0	17046216	intron	0	0.48	2E-8	7.698970004336018	(FI)	    .18	[0.12-0.24] unit increase	Affymetrix [5,396,838] (imputed)	N
09/12/2012	22791750	Chen G	07/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22791750	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	5q33.3	5	160422579	PTTG1	PTTG1			9232			rs1895320-C	rs1895320	0	1895320	intron	0	0.12	6E-6	5.221848749616356	(FI)	    .22	[0.12-0.32] unit increase	Affymetrix [5,396,838] (imputed)	N
09/12/2012	22791750	Chen G	07/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22791750	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	10q26.3	10	130949624	TCERG1L	GLRX3 - MIR378C	10539	100422867		      769.24	       12.96	rs10829848-T	rs10829848	0	10829848	Intergenic	1	0.13	3E-8	7.522878745280337	(IR)	    .30	[0.20-0.40] unit increase	Affymetrix [5,396,838] (imputed)	N
09/12/2012	22791750	Chen G	07/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22791750	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	4q32.3	4	165334552	SC4MOL	MSMO1			6307			rs17046216-A	rs17046216	0	17046216	intron	0	0.48	3E-8	7.522878745280337	(IR)	    .19	[0.13-0.25] unit increase	Affymetrix [5,396,838] (imputed)	N
09/12/2012	22791750	Chen G	07/12/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22791750	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	10q26.3	10	130949624	TCERGIL	GLRX3 - MIR378C	10539	100422867		      769.24	       12.96	rs10829848-T	rs10829848	0	10829848	Intergenic	1	0.13	1E-7	7	(FI)	    .25	[0.15-0.35] unit increase	Affymetrix [5,396,838] (imputed)	N
09/20/2012	22807686	Li S	07/12/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22807686	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers  	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers  	6p21.32	6	32632222	HLA-DQA1, HLA-DRB1	TRNAI25			100189401			rs9272105-A	rs9272105	0	9272105		0	0.45	5E-22	21.30102999566398		   1.28	[1.22-1.35] 	NR [523,663]	N
09/20/2012	22807686	Li S	07/12/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22807686	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers  	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers  	21q21.3	21	29773850	GRIK1	GRIK1			2897			rs455804-C	rs455804	0	455804	intron	0	0.66	5E-10	9.301029995663981		   1.19	[1.12-1.25] 	NR [523,663]	N
09/20/2012	22807686	Li S	07/12/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22807686	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers  	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers  	NR			HLA_DRB1, HLA_DQA1	 - 						3-SNP haplotype	HLA_DRB1_0405, HLA_DRB1_0901, rs9272105					NR	2E-7			   1.32	[1.19-1.46] 	NR [523,663]	N
09/12/2012	22785395	Gaj P	07/11/2012	J Alzheimers Dis	http://www.ncbi.nlm.nih.gov/pubmed/22785395	Identification of a late onset Alzheimer's disease candidate risk variant at 9q21.33 in Polish patients.	Alzheimer's disease	141 European ancestry cases, 141 European ancestry controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [NR] (pooled)	N
09/14/2012	22780124	Lind PA	07/11/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22780124	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	16q13	16	56691261	MT1X, MT11P, MT1H, MT1G, MT1F, MT1B, NUP93	DPPA2P4 - NUP93	100131777	9688		        2.96	       38.84	rs8064100-A	rs8064100	0	8064100	Intergenic	1	0.582	3E-6	5.522878745280337		    .15	[0.087-0.209] unit decrease	Illumina [2,373,249] (imputed)	N
09/14/2012	22780124	Lind PA	07/11/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22780124	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	9p24.2	9	2551654	FLJ35024, VLDLR	VLDLR-AS1			401491			rs12237653-T	rs12237653	0	12237653		0	0.868	3E-6	5.522878745280337		    .23	[0.13-0.32] unit increase	Illumina [2,373,249] (imputed)	N
09/14/2012	22780124	Lind PA	07/11/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22780124	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	12q24.33	12	130146390	Intergenic, FZD10, FLJ31485	TRNAI29P - FZD10-AS1	100189474	440119		      914.66	        5.20	rs11060736-T	rs11060736	0	11060736	Intergenic	1	0.941	4E-6	5.397940008672037		    .29	[0.16-0.41] unit decrease	Illumina [2,373,249] (imputed)	N
09/14/2012	22780124	Lind PA	07/11/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22780124	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	6p22.3	6	16342825	ATXN1, GMPR	ATXN1			6310			rs9383153-A	rs9383153	0	9383153	intron	0	0.948	5E-6	5.301029995663981		    .33	[0.19-0.47] unit increase	Illumina [2,373,249] (imputed)	N
09/14/2012	22780124	Lind PA	07/11/2012	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22780124	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	9p24.2	9	2548556	FLJ35024, VLDLR	VLDLR-AS1			401491			rs10812227-C	rs10812227	0	10812227		0	.868	5E-6	5.301029995663981		    .22	[0.13-0.32] unit increase	Illumina [2,373,249] (imputed)	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	1q42.13	1	228883401	RHOU, RAB4A	FTH1P2 - ISCA1P2	2497	100288517		      195.52	      158.69	rs11585386-?	rs11585386	0	11585386	Intergenic	1	0.05	5E-6	5.301029995663981		NR	NR	Affymetrix [630,309]	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	5q34	5	163571509	MAT2B, LOC391844	MAT2B - RPS15P6	27430	391845		       52.16	     1029.46	rs294588-?	rs294588	0	294588	Intergenic	1	0.26	1E-6	5.999999999999999		NR	NR	Affymetrix [630,309]	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	6p25.3	6	858970	HUS1B, FOXQ1	HUS1B - FOXQ1	135458	94234		      202.01	      453.47	rs1572438-?	rs1572438	0	1572438	Intergenic	1	0.27	9E-6	5.045757490560675		NR	NR	Affymetrix [630,309]	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	6q14.1	6	79756407	SH3BGRL2, ELOVL4	SH3BGRL2 - C6orf7	83699	89758		       52.76	       47.18	rs6925255-?	rs6925255	0	6925255	Intergenic	1	0.49	1E-6	5.999999999999999		NR	NR	Affymetrix [630,309]	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	6q26	6	160912905	PLG, MAP3K4	PLG - MAP3K4	5340	4216		      158.85	       78.88	rs1247318-?	rs1247318	0	1247318	Intergenic	1	0.10	3E-6	5.522878745280337		NR	NR	Affymetrix [630,309]	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	6q26	6	161512903	PARK2	PARK2			5071			rs16892673-?	rs16892673	0	16892673	intron	0	0.06	5E-6	5.301029995663981		NR	NR	Affymetrix [630,309]	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	7q21.3	7	94062432	BET1, COL1A2	BET1 - COL1A2	10282	1278		       58.05	      332.13	rs9918668-?	rs9918668	0	9918668	Intergenic	1	0.43	6E-7	6.221848749616355		NR	NR	Affymetrix [630,309]	N
09/20/2012	22773346	Edwards DR	07/07/2012	Age (Dordr)	http://www.ncbi.nlm.nih.gov/pubmed/22773346	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NR	12q24.33	12	128991394	LOC100129252, NLRP9P	AK3P6 - NLRP9P	100873789	347933		       46.10	       21.89	rs643473-?	rs643473	0	643473	Intergenic	1	0.40	9E-6	5.045757490560675		NR	NR	Affymetrix [630,309]	N
07/19/2012	22673310	Liao M	07/07/2012	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/22673310	Genome-wide association study identifies common variants at TNFRSF13B associated with IgG level in a healthy Chinese male population.	IgG levels	1,999 Chinese ancestry males	1,496 Chinese ancestry males	17p11.2	17	16941853	TNFRSF13B	TNFRSF13B			23495			rs4792800-G	rs4792800	0	4792800	intron	0	0.50	1E-12	12		NR	NR	Illumina [1,940,243] (imputed)	N
09/12/2012	22792082	Himes BE	07/05/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22792082	Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene.	Asthma (bronchodilator response)	1,644 European ancestry asthmatic cases	1,051 European ancestry asthmatic cases	2q33.1	2	200285317	SPATS2L	C2orf47 - SPATS2L	79568	26010		      321.19	       20.56	rs295137-T	rs295137	0	295137	Intergenic	1	0.41	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [4,571,615] (imputed)	N
09/11/2012	22792070	Medina-Gomez C	07/05/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22792070	Meta-analysis of genome-wide scans for total body BMD in children and adults reveals allelic heterogeneity and age-specific effects at the WNT16 locus.	Bone mineral density	1,834 European ancestry children, 825 children 	11,052 European ancestry individuals	7q31.31	7	121378525	WNT16	FAM3C			10447			rs917727-T	rs917727	0	917727	intron	0	0.273	1E-27	27		    .15	[NR] unit increase	Illumina [3,021,329] (imputed)	N
09/11/2012	22792070	Medina-Gomez C	07/05/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22792070	Meta-analysis of genome-wide scans for total body BMD in children and adults reveals allelic heterogeneity and age-specific effects at the WNT16 locus.	Bone mineral density	1,834 European ancestry children, 825 children 	11,052 European ancestry individuals	7q31.31	7	121263761	C7orf58	CPED1			79974			rs4609139-T	rs4609139	0	4609139	intron	0	0.355	1E-10	10	(Conditional on rs917727)	    .08	[NR] unit decrease	Illumina [3,021,329] (imputed)	N
09/18/2012	22792221	Takamoto M	07/05/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22792221	Common variants on chromosome 9p21 are associated with normal tension glaucoma.	Glaucoma	286 Japanese ancestry cases, 557 Japanese ancestry controls	334 Japanese ancestry cases, 701 Japanese ancestry controls	9p21.3	9	22019130	CDKN2B, CDKN2BAS, CDK2NA	CDKN2B-AS1			100048912			rs523096-A	rs523096	0	523096	intron	0	0.825	5E-11	10.30102999566398		   2.13	[1.69-2.68] 	Affymetrix [531,009]	N
09/12/2012	22763476	Zhang D	07/05/2012	Hypertens Res	http://www.ncbi.nlm.nih.gov/pubmed/22763476	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NR	1q31.2	1	192462868	RGS21, PPP3CA	RGS21 - RGS1	431704	5996		       95.58	      112.86	rs12067906-?	rs12067906	0	12067906	Intergenic	1	NR	9E-7	6.045757490560675		NR	NR	Affymetrix [~900,000]	N
09/12/2012	22763476	Zhang D	07/05/2012	Hypertens Res	http://www.ncbi.nlm.nih.gov/pubmed/22763476	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NR	4q24	4	101639133	BANK1, PPP3CA	FLJ20021 - BANK1	90024	55024		      290.25	      151.47	rs17031508-?	rs17031508	0	17031508	Intergenic	1	NR	8E-8	7.096910013008055		NR	NR	Affymetrix [~900,000]	N
09/12/2012	22763476	Zhang D	07/05/2012	Hypertens Res	http://www.ncbi.nlm.nih.gov/pubmed/22763476	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NR	6p24.1	6	13270713	PHACTR1	PHACTR1			221692			rs1223397-?	rs1223397	0	1223397	intron	0	NR	1E-7	7		NR	NR	Affymetrix [~900,000]	N
09/12/2012	22763476	Zhang D	07/05/2012	Hypertens Res	http://www.ncbi.nlm.nih.gov/pubmed/22763476	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NR	13q33.3	13	108695311	MYO16	MYO16			23026			rs7984522-?	rs7984522	0	7984522	intron	0	NR	7E-7	6.154901959985743		NR	NR	Affymetrix [~900,000]	N
09/12/2012	22792071	Zheng HF	07/05/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22792071	WNT16 influences bone mineral density, cortical bone thickness, bone strength, and osteoporotic fracture risk.	Bone mineral density	5672 European ancestry individuals	NA	7q31.31	7	121329715	WNT16	WNT16			51384			rs2908004-G	rs2908004	0	2908004	missense	0	0.58	1E-15	15		    .16	[NR] mg/cm3 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/12/2012	22792071	Zheng HF	07/05/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22792071	WNT16 influences bone mineral density, cortical bone thickness, bone strength, and osteoporotic fracture risk.	Cortical thickness	5878 European ancestry individuals	1032 European ancestry individuals	13q14.11	13	42554441	TNFSF11, RANKL	FABP3P2 - TNFSF11	56677	8600		      184.68	        8.30	rs9525638-T	rs9525638	0	9525638	Intergenic	1	NR	4E-9	8.397940008672036		    .09	[0.051-0.129] mm decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/12/2012	22792071	Zheng HF	07/05/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22792071	WNT16 influences bone mineral density, cortical bone thickness, bone strength, and osteoporotic fracture risk.	Cortical thickness	5878 European ancestry individuals	1032 European ancestry individuals	7q31.31	7	121339035	WNT16	WNT16			51384			rs2707466-C	rs2707466	0	2707466	missense	0	NR	2E-10	9.698970004336017		    .11	[0.071-0.149] mm decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	7q22.1	7	101472713	EMID2	COL26A1			136227			rs17135437-A	rs17135437	0	17135437	intron	0	0.019	3E-8	7.522878745280337	(EA + AA - Vision\hearing)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	18p11.31	18	6941663	LAMA1	LAMA1			284217			rs3810046-T	rs3810046	0	3810046	nearGene-3	0	0.456	5E-7	6.30102999566398	(EA + AA - Overall tolerability)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	5p13.1	5	38452792	EGFLAM	EGFLAM			133584			rs7715172-G	rs7715172	0	7715172	intron	0	0.071	3E-6	5.522878745280337	(EA + AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	20p12.2	20	11176363	Intergenic	FAT1P1 - RPS11P1	170513	128718		      287.27	      169.02	rs6040399-T	rs6040399	0	6040399	Intergenic	1	0.308	7E-7	6.154901959985743	(EA + AA - Dizziness)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	2q33.1	2	200783916	AOX2P	AOX2P;LOC101927795			344454;101927795			rs13430864-G	rs13430864	0	13430864	intron;intron	0	0.04	5E-7	6.30102999566398	(EA + AA - Dizziness)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	16p13.12	16	13563028	Intergenic	LOC101927287			101927287			rs2903308-A	rs2903308	0	2903308	nearGene-3	0	0.461	2E-6	5.698970004336018	(EA + AA - Overall tolerability)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	3p14.2	3	59935294	FHIT	FHIT			2272			rs4502542-T	rs4502542	0	4502542	intron	0	0.017	2E-6	5.698970004336018	(EA + AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	13q31.1	13	83556097	Intergenic	RNU6-67P - SLITRK1	100873771	114798		      257.93	      321.11	rs6563353-A	rs6563353	0	6563353	Intergenic	1	0.177	2E-6	5.698970004336018	(EA + AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	13q33.2	13	105154672	Intergenic	RPL7P45 - DAOA-AS1	100271225	282706		      339.54	      304.38	rs16965962-T	rs16965962	0	16965962	Intergenic	1	0.03	3E-7	6.522878745280337	(EA + AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	Xq23	23	117088295	Intergenic	SETP8 - KLHL13	100128536	90293		      124.62	      809.52	rs6646773-C	rs6646773	0	6646773	Intergenic	1	0.076	1E-6	5.999999999999999	(EA + AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	3q27.3	3	187696203	RPT2	SST - RTP2	6750	344892		       25.79	        2.06	rs6764050-G	rs6764050	0	6764050	Intergenic	1	0.023	9E-7	6.045757490560675	(EA + AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	7q22.1	7	101472713	EMID2	COL26A1			136227			rs17135437-A	rs17135437	0	17135437	intron	0	NR	3E-6	5.522878745280337	(AA - Vision\hearing)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	18p11.31	18	6941109	LAMA1	SCML2P1 - LAMA1	100421167	284217		       12.89	         .64	rs4398173-G	rs4398173	0	4398173	Intergenic	1	NR	4E-6	5.397940008672037	(EA - Overall tolerability)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	20p12.2	20	11176363	Intergenic	FAT1P1 - RPS11P1	170513	128718		      287.27	      169.02	rs6040399-T	rs6040399	0	6040399	Intergenic	1	NR	1E-6	5.999999999999999	(AA - Dizziness)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	13q33.2	13	105154672	Intergenic	RPL7P45 - DAOA-AS1	100271225	282706		      339.54	      304.38	rs16965962-T	rs16965962	0	16965962	Intergenic	1	NR	3E-7	6.522878745280337	(AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	4q35.2	4	186417181	Intergenic	F11-AS1;LOC102723888			285441;102723888			rs11935103-T	rs11935103	0	11935103	intron;intron	0	0.262	1E-6	5.999999999999999	(EA + AA - GSE)	NR	NR	Affymetrix [421,789]	N
09/21/2012	22760553	Adkins DE	07/03/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22760553	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases 	NR	4q35.2	4	186417181	Intergenic	F11-AS1;LOC102723888			285441;102723888			rs11935103-T	rs11935103	0	11935103	intron;intron	0	NR	2E-6	5.698970004336018	(EA - GSE)	NR	NR	Affymetrix [421,789]	N
09/11/2012	22764253	Thier S	07/03/2012	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/22764253	Polymorphisms in the glial glutamate transporter SLC1A2 are associated with essential tremor.	Essential tremor	436 European ancestry cases, 928 European ancestry controls	554 European ancestry cases, 609 European ancestry controls	11p13	11	35308068	SLC1A2	SLC1A2			6506			rs3794087-?	rs3794087	0	3794087	intron	0	NR	1E-7	7		   1.43	[1.26-1.64] 	Affymetrix [620,077]	N
09/12/2012	22763110	Loughlin	07/02/2012	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/22763110	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	1q41	1	219500486	NR	RIMKLBP2 - ZC3H11B	100422371	643136		      299.79	      107.44	rs1417066-G	rs1417066	0	1417066	Intergenic	1	NR	1E-6	5.999999999999999		   1.07	[1.04-1.10] 	Illumina [485,491] 	N
09/12/2012	22763110	Loughlin	07/02/2012	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/22763110	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	3p21.1	3	52687289	GNL3, GLT8D1	GNL3;PBRM1;SNORD19			26354;55193;692089			rs11177-A	rs11177	0	11177	missense;nearGene-5;nearGene-5	0	0.38	5E-9	8.301029995663981		   1.09	[1.06-1.12] 	Illumina [485,491] 	N
09/12/2012	22763110	Loughlin	07/02/2012	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/22763110	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	6p21.1	6	44809954	SUPT3H, CDC5L	SUPT3H			8464			rs10948172-G	rs10948172	0	10948172	intron	0	0.29	6E-7	6.221848749616355		   1.08	[1.05-1.12] 	Illumina [485,491] 	N
09/12/2012	22763110	Loughlin	07/02/2012	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/22763110	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	16q12.2	16	53805223	FTO	FTO			79068			rs8044769-C	rs8044769	0	8044769	intron	0	0.50	4E-6	5.397940008672037		   1.07	[1.04-1.10] 	Illumina [485,491] 	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	14q32.12	14	93738999	PRIMA1	PRIMA1			145270			rs6575353-?	rs6575353	0	6575353	intron	0	0.90	1E-6	5.999999999999999		   1.47	[1.12-1.89] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	3p13	3	70577209	RP11-430J3.1	UQCRHP4 - COX6CP6	100128448	100289131		      436.72	      173.86	rs7628219-T	rs7628219	0	7628219	Intergenic	1	0.18	2E-6	5.698970004336018		   1.61	[1.33-1.96] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	10q25.2	10	111118043	RP11-479A21.1	ADRA2A - BTBD7P2	150	100420392		       37.14	      204.74	rs2065779-?	rs2065779	0	2065779	Intergenic	1	0.93	3E-6	5.522878745280337		   1.82	[1.41-2.33] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	3p14.3	3	55154246	RP11-889D3.1	LRTM1 - WNT5A	57408	7474		      187.16	      311.47	rs11706236-?	rs11706236	0	11706236	Intergenic	1	0.86	4E-6	5.397940008672037		   1.59	[1.32-1.96] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	13q12.3	13	29387195	MTUS2	MTUS2			23281			rs2388082-?	rs2388082	0	2388082	intron	0	0.89	4E-6	5.397940008672037		   1.69	[1.35-2.13] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	11q14.3	11	92986515	MTNR1B	MTNR1B - RPL26P31	4544	100271469		        3.73	       65.86	rs10830964-?	rs10830964	0	10830964	Intergenic	1	0.88	5E-6	5.301029995663981		   1.61	[1.30-2.00] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	18q21.31	18	58243291	NEDD4L	NEDD4L			23327			rs158856-?	rs158856	0	158856	intron	0	0.66	7E-6	5.154901959985742		   1.41	[1.20-1.61] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	11q13.4	11	73183803	P2RY2	RPL15P16 - P2RY2	100127949	5029		      242.69	       33.87	rs1791933-?	rs1791933	0	1791933	Intergenic	1	0.98	8E-6	5.096910013008055		   3.70	[2.08-6.67] 	Illumina [2,380,486] (imputed)	N
09/08/2012	22754043	Byrne EM	07/01/2012	Sleep	http://www.ncbi.nlm.nih.gov/pubmed/22754043	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	8q24.23	8	135976961	AC105008.1	MAPRE1P1 - FLJ45872	80327	401478		      350.93	     1832.47	rs16905439-?	rs16905439	0	16905439	Intergenic	1	0.99	9E-6	5.045757490560675		   3.33	[1.96-5.88] 	Illumina [2,380,486] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	1q42.2	1	233584238	KCNK1, KIAA1804	KIAA1804 - KCNK1	84451	3775		      199.09	       29.77	rs11800854-G	rs11800854	0	11800854	Intergenic	1	0.947	3E-7	6.522878745280337	(Red)	  12.30	[3.70-41.3] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	1p22.2	1	88159953	PKN2	LMO4 - RPL36AP10	8543	100271140		      811.03	      417.89	rs12032672-C	rs12032672	0	12032672	Intergenic	1	0.332	1E-6	5.999999999999999	(Red)	   1.99	[1.50-2.62] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	5q32	5	148425557	FBXO38, HTR4	FBXO38			81545			rs10043775-T	rs10043775	0	10043775	missense	0	0.703	2E-6	5.698970004336018	(Red)	   2.06	[1.51-2.83] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	9p24.1	9	6486308	UHRF2, GLDC, TPD52L3, IL33	UHRF2			115426			rs16924631-C	rs16924631	0	16924631	intron	0	0.122	3E-6	5.522878745280337	(Red)	   2.29	[1.61-3.24] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	4p14	4	37936897	TBC1D1, PTTG2	TBC1D1			23216			rs10010758-C	rs10010758	0	10010758	intron	0	0.291	4E-6	5.397940008672037	(Red)	   1.91	[1.45-2.51] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	6p21.1	6	45729051	CLIC5, RUNX2	TRNAI25			100189401			rs1932040-G	rs1932040	0	1932040		0	0.808	1E-6	5.999999999999999	(Orange)	   2.47	[1.67-3.65] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	8q23.3	8	114108798	CSMD3, TRPS1	RPL18P7 - TRPS1	100270945	7227		      731.51	     1299.70	rs9942773-A	rs9942773	0	9942773	Intergenic	1	0.703	2E-6	5.698970004336018	(Orange)	   2.07	[1.51-2.82] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	1p36.23	1	7461525	CAMTA1, VAMP3	CAMTA1			23261			rs1616122-T	rs1616122	0	1616122	intron	0	0.506	5E-6	5.301029995663981	(Orange)	   1.85	[1.41-2.42] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	14q24.3	14	75347325	FOS, JDP2	LINC01220 - JDP2	731223	122953		       50.92	       80.48	rs11621969-T	rs11621969	0	11621969	Intergenic	1	0.789	9E-7	6.045757490560675	(A. actino)	   2.46	[1.68-3.62] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	5q34	5	168216540	ODZ2, WWC1	TENM2			57451			rs6885116-G	rs6885116	0	6885116	intron	0	0.078	1E-6	5.999999999999999	(A. actino)	   2.57	[1.76-3.74] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	10q23.1	10	85875167	GRID1, MI346, WAPAL	GRID1			2894			rs1970525-G	rs1970525	0	1970525	intron	0	0.054	4E-6	5.397940008672037	(A. actino)	   2.89	[1.85-4.52] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	1q42.2	1	233584238	KCNK1, KIAA1804	KIAA1804 - KCNK1	84451	3775		      199.09	       29.77	rs11800854-G	rs11800854	0	11800854	Intergenic	1	0.947	4E-6	5.397940008672037	(A. actino)	   8.12	[2.73-24.11] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	2q31.1	2	175853013	KIAA1715, EVX2, EXTLP2	EXTL2P1 - KIAA1715	100287682	80856		        9.71	       72.67	rs9287989-C	rs9287989	0	9287989	Intergenic	1	0.484	4E-6	5.397940008672037	(A. actino)	   1.80	[1.39-2.33] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	2p23.3	2	26559753	OTOF, C2Orf70, CIB4	OTOF			9381			rs1011108-T	rs1011108	0	1011108	nearGene-5	0	0.341	2E-6	5.698970004336018	(P. gingi)	   1.79	[1.40-2.27] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	9q33.2	9	121803541	DAB2IP, TTLL11	DAB2IP - TTLL11	153090	158135		       18.01	       12.13	rs10760187-C	rs10760187	0	10760187	Intergenic	1	0.498	5E-7	6.30102999566398	(P. gingi)	   2.07	[1.55-2.76] 	Affymetrix [~2.5 million] (imputed)	N
11/22/2012	22699663	Divaris K	07/01/2012	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/22699663	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NR	10p11.21	10	36596993	ANKRD30A, FZD8	NAMPTL - MKNK2P1	646309	389948		       72.77	      347.07	rs1360573-A	rs1360573	0	1360573	Intergenic	1	0.752	2E-6	5.698970004336018	(P. gingi)	   2.75	[1.78-4.26] 	Affymetrix [~2.5 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	2p24.1	2	19745816	TTC32, WDR35	OSR1 - CISD1P1	130497	130500		      387.21	       80.40	rs2123536-T	rs2123536	0	2123536	Intergenic	1	0.39	7E-11	10.15490195998574		   1.12	[1.08-1.16] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	4q32.1	4	155590307	GUCY1A3	MTND1P22 - GUCY1A3	100287591	2982		      126.48	       76.40	rs1842896-T	rs1842896	0	1842896	Intergenic	1	0.76	1E-11	11		   1.14	[1.10-1.19] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p21.32	6	32373576	C6orf10, BTNL2	C6orf10			10665			rs9268402-G	rs9268402	0	9268402	nearGene-5	0	0.59	3E-15	14.52287874528034		   1.16	[1.12-1.20] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	12q21.33	12	89687411	ATP2B1	ATP2B1			490			rs7136259-T	rs7136259	0	7136259	intron	0	0.39	6E-10	9.221848749616356		   1.11	[1.08-1.15] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	9p21.3	9	22096056	CDKN2A/B	CDKN2B-AS1			100048912			rs10757274-G	rs10757274	0	10757274	intron	0	0.46	8E-45	44.09691001300806		   1.37	[1.31-1.43] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	12q24.13	12	112379979	C12orf51	HECTD4			283450			rs11066280-A	rs11066280	0	11066280	intron	0	0.17	2E-11	10.69897000433602		   1.19	[1.13-1.25] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-G	rs9349379	0	9349379	intron	0	0.74	2E-9	8.698970004336019		   1.15	[1.10-1.21] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22751097	Lu X	07/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22751097	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	6q23.2	6	133875536	TCF21	LOC100507308			100507308			rs12524865-C	rs12524865	0	12524865	intron	0	0.61	2E-7	6.698970004336019		   1.11	[1.06-1.16] 	Affymetrix [~2.2 million] (imputed)	N
09/20/2012	22794196	Lu Y	07/01/2012	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22794196	Genome-wide association study for ovarian cancer susceptibility using pooled DNA.	Ovarian cancer	342 European ancestry cases, 643 European ancestry controls	4,651 European ancestry cases, 6,966 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [914,948] (pooled)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	12p13.31	12	9228263	LOC642846, LOC728715	A2MP1			3			rs10771431-A	rs10771431	0	10771431	nearGene-3	0	0.444	2E-6	5.698970004336018		    .07	[0.042-0.104] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	2p23.3	2	27375230	GCKR, SLC4A1AP	SNX17			9784			rs4665972-T	rs4665972	0	4665972	intron	0	0.448	1E-6	5.999999999999999		    .08	[0.047-0.113] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	12p11.22	12	28003148	PTHLH, LOC100129646	PTHLH - CCDC91	5744	55297		       31.17	      187.28	rs12371778-G	rs12371778	0	12371778	Intergenic	1	0.091	1E-8	8		    .16	[0.11-0.22] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	8p11.23	8	36988591	ZNF703,MRPS7P1,KCNU1	LOC102723593			102723593			rs7816345-T	rs7816345	0	7816345	intron	0	0.194	2E-14	13.69897000433602		    .15	[0.11-0.19] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	22q.13.1			MKL1, WBP2NL, NAGA, FAM109B	 - 						chr22:40779964-A	chr22:40779964					0.056	5E-7			    .19	[0.11-0.26] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	22q13.31			LOC100128818, TBC1D22A	 - 						chr22:45895495-T	chr22:45895495					0.199	7E-6			    .12	[0.064-0.166] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	6p12.3			DEFB112, TFAP2D	 - 						chr6:50202617-A	chr6:50202617					0.053	5E-6			    .17	[0.100-0.248] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	3p14.2	3	60777523	NPCDR1,PTPRG	FHIT			2272			rs11919041-T	rs11919041	0	11919041	intron	0	0.287	2E-6	5.698970004336018		    .08	[0.049-0.115] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	3p14.2	3	62747691	CADPS	CADPS			8618			rs580384-C	rs580384	0	580384	intron	0	0.089	4E-6	5.397940008672037		    .12	[0.071-0.177] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	10q21.2	10	62427805	ZNF365, ALDH7A1P4, ADO	ZNF365			22891			rs7089814-C	rs7089814	0	7089814	intron	0	0.375	3E-9	8.522878745280337		    .10	[0.065-0.127] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	6q12			NUFIP1P	 - 						chr6:67596834-A	chr6:67596834					0.0020	7E-6			   1.01	[0.57-1.45] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	11q13.3	11	69328516	IFITM9P, CCND1	IFITM9P - CCND1	390218	595		       24.71	      312.59	rs7102705-A	rs7102705	0	7102705	Intergenic	1	0.211	5E-6	5.301029995663981		    .09	[0.049-0.123] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	4q13.3	4	74577305	AREG, EREG, EPGN, AREGB	AREG - BTC	374	685		      122.30	      168.93	rs62314947-T	rs62314947	0	62314947	Intergenic	1	0.281	5E-8	7.30102999566398		    .10	[0.064-0.138] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	10q22.2	10	74943248	COMTD1,SPA17P1	KAT6B;LOC101929165			23522;101929165			rs10466033-G	rs10466033	0	10466033	intron;intron	0	0.0080	6E-6	5.221848749616356		    .44	[0.25-0.63] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	13q31.3	13	92929538	GPC6	GPC5-AS1 - GPC6	100873969	10082		      207.92	      297.29	rs9523848-T	rs9523848	0	9523848	Intergenic	1	0.293	3E-6	5.522878745280337		    .08	[0.048-0.114] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	14q32.13	14	94329847	SERPINA6, CLMN	SERPINA6 - SERPINA2	866	390502		        6.50	       34.47	rs61280460-T	rs61280460	0	61280460	Intergenic	1	0.199	8E-7	6.096910013008056		    .10	[0.058-0.132] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	12q22	12	95633983	NEDD1, MIR135A2	USP44 - PGAM1P5	84101	100132594		       82.50	       15.27	rs17356907-G	rs17356907	0	17356907	Intergenic	1	0.296	1E-6	5.999999999999999		    .08	[0.048-0.114] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	2q14.2	2	120487546	INHBB, LOC84931, GLI2	LINC01101 - GLI2	84931	2736		       21.20	      309.75	rs4849887-T	rs4849887	0	4849887	Intergenic	1	0.113	3E-11	10.52287874528034		    .17	[0.12-0.22] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	3q22.1			TMCC1	 - 						chr3:130947635-A	chr3:130947635					0.0010	5E-7			   2.30	[1.41-3.19] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	8q24.3	8	141530825	FLJ43860	HNRNPA1P38 - MIR1302-7	100421384	100302147		       70.60	      255.42	rs7837045-A	rs7837045	0	7837045	Intergenic	1	0.22	5E-6	5.301029995663981		    .09	[0.053-0.131] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	6q25.1	6	151636579	ESR1, C6orf97	CCDC170 - ESR1	80129	2099		       15.39	       53.92	rs12173570-T	rs12173570	0	12173570	Intergenic	1	0.101	6E-11	10.22184874961635		    .17	[0.12-0.22] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	4q35.2			TLR3	 - 						chr4:187239569-T	chr4:187239569					0.013	6E-6			    .41	[0.23-0.58] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	1q32.1	1	201915824	ATP2B4	LMOD1			25802			rs2819348-C	rs2819348	0	2819348	intron	0	0.318	3E-6	5.522878745280337		    .08	[0.045-0.111] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	2q14.2	2	119755557	EPB41L5	LOC101927764			101927764			rs13401620-A	rs13401620	0	13401620	intron	0	0.224	2E-6	5.698970004336018		    .10	[0.056-0.134] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	2p14	2	64268493	RPL23AP37, LOC100128607	LINC00309 - MIR4433B	150992	102465833		       63.01	       72.25	rs1529102-A	rs1529102	0	1529102	Intergenic	1	0.495	6E-6	5.221848749616356		    .07	[0.041-0.099] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	2p23.3	2	27519736	SLC4A1AP	GCKR			2646			rs780093-T	rs780093	0	780093	intron	0	0.416	5E-6	5.301029995663981		    .07	[0.041-0.103] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	2q31.2	2	178239571	TTN	OSBPL6			114880			rs34479159-C	rs34479159	0	34479159	intron	0	0.19	6E-6	5.221848749616356		    .09	[0.050-0.128] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	3q13.31			LOC645207, GAP43	 - 						chr3:116704634-A	chr3:116704634					0.054	8E-6			    .17	[0.092-0.238] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	3p24.1	3	29167660	MESTP4, RBMS3	MESTP4 - RBMS3-AS3	131572	100873979		       78.04	       96.53	rs6549915-T	rs6549915	0	6549915	Intergenic	1	0.444	9E-6	5.045757490560675		    .08	[0.043-0.113] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	4q34.3	4	179462158	RPL19P8	RNA5SP173 - LINC00290	100873437	728081		     1055.33	     1601.93	rs2716816-C	rs2716816	0	2716816	Intergenic	1	0.149	7E-6	5.154901959985742		    .10	[0.055-0.141] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	7p14.2	7	36912416	ELMO1	ELMO1			9844			rs10488023-G	rs10488023	0	10488023	intron	0	0.142	8E-6	5.096910013008055		    .10	[0.056-0.142] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	11q24.2	11	126003207	KIRREL3	CDON			50937			rs7104745-G	rs7104745	0	7104745	intron	0	0.458	6E-6	5.221848749616356		    .07	[0.039-0.101] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	13q13.3	13	35957411	FAM48A	DCLK1			9201			rs34065801-C	rs34065801	0	34065801	intron	0	0.176	6E-6	5.221848749616356		    .10	[0.055-0.137] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	13q21.2	13	59379332	TDRD3	RPP40P2 - RNU7-88P	100420608	100873843		      115.94	      100.74	rs12585963-A	rs12585963	0	12585963	Intergenic	1	0.312	2E-6	5.698970004336018		    .08	[0.047-0.113] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	5q15	18	32399612	NOL4	CTD-2337A12.1			101929710			rs58263042-C	rs58263042	0	58263042	intron	0	0.061	9E-6	5.045757490560675		    .17	[0.092-0.238] cup size decrease	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	2q14.2	2	120332155	INHBB	RALB - INHBB	5899	3625		       37.44	       13.99	rs17625845-C	rs17625845	0	17625845	Intergenic	1	.205	5E-10	9.301029995663981		    .13	[.086-.164] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	22q12.1	22	28765019	CHEK2, MTFP1, LOC646513, SEC14L2, SDC4P	HSCB - CCDC117	150274	150275		        7.50	        7.66	rs4820792-T	rs4820792	0	4820792	Intergenic	1	.180	4E-7	6.397940008672037		    .11	[0.065-.146] cup size increase	Illumina [7,422,970] (imputed)	N
08/20/2012	22747683	Eriksson N	06/30/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22747683	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry females	NA	7q31.1	7	112002591	ZNF277	DOCK4			9732			rs61159171-T	rs61159171	0	61159171	intron	0	0.348	6E-6	5.221848749616356		    .08	[0.042-0.108] cup size decrease	Illumina [7,422,970] (imputed)	N
08/10/2012	22744181	Hai R	06/29/2012	Sci China Life Sci	http://www.ncbi.nlm.nih.gov/pubmed/22744181	Bivariate genome-wide association study suggests that the DARC gene influences lean body mass and age at menarche.	Lean body mass and age at menarche (combined)	801 Han Chinese ancestry females	1,692 European ancestry females	1q23.2	1	159204097	DARC	ACKR1;CADM3-AS1			2532;100131825			rs3027009-?	rs3027009	0	3027009	UTR-5;nearGene-5	0	NR	7E-7	6.154901959985743	(Bivariate)	NR	NR	Affymetrix [909,622]	N
08/10/2012	22739583	Plourde M	06/28/2012	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/22739583	A Variant in the LRRFIP1 Gene Is Associated With Adiposity and Inflammation.	Adiposity	928 Other ancestry individuals	NA	2q37.3	2	237763782	LRRFIP1	LRRFIP1			9208			rs11680012-C	rs11680012	0	11680012	missense	0	0.05	4E-6	5.397940008672037	(TAT)	    .58	[NR] cm2 increase	Illumina [543,714]	N
08/10/2012	22737229	Nishida N	06/21/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22737229	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, and up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	6	33065245	HLA-DPA1	HLA-DPA1			3113			rs3077-C	rs3077	0	3077	UTR-3	0	0.60	4E-45	44.39794000867204	(Protective effects against CHB)	   1.82	[1.67-1.96] 	Affymetrix [597,789]	N
08/10/2012	22737229	Nishida N	06/21/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22737229	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, and up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	6	33087084	HLA-DPB1	HLA-DPB1			3115			rs9277535-G	rs9277535	0	9277535	UTR-3	0	0.57	2E-21	20.69897000433602	(Protective effects against CHB)	   1.64	[1.47-1.82] 	Affymetrix [597,789]	N
08/10/2012	22737229	Nishida N	06/21/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22737229	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, and up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	6	33065245	HLA-DPA1	HLA-DPA1			3113			rs3077-C	rs3077	0	3077	UTR-3	0	0.60	1E-9	8.999999999999998	(Clearance of HBV)	   1.67	[1.43-2.0] 	Affymetrix [597,789]	N
08/10/2012	22737229	Nishida N	06/21/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22737229	Genome-wide association study confirming association of HLA-DP with protection against chronic hepatitis B and viral clearance in Japanese and Korean.	Hepatitis B (viral clearance)	181 East Asian ancestry HBV carriers, 184 East Asian ancestry controls, 185 East Asian ancestry spontaneously HBV-resolved individuals	Up to 8,045 East Asian ancestry HBV carriers, up to 9,003 East Asian ancestry controls, and up to 3,995 East Asian ancestry spontaneously HBV-resolved individuals	6p21.32	6	33087084	HLA-DPB1	HLA-DPB1			3115			rs9277535-G	rs9277535	0	9277535	UTR-3	0	0.57	2E-17	16.69897000433602	(Clearance of HBV)	   1.52	[1.37-1.67] 	Affymetrix [597,789]	N
08/08/2012	22745674	Hager J	06/20/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22745674	Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis.	Coronary heart disease	1,949 Middle Eastern ancestry individuals	2,547 Middle Eastern ancestry individuals	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-G	rs9349379	0	9349379	intron	0	0.349	8E-10	9.096910013008054	(CAD)	   1.34	[1.22-1.47] 	Illumina [513,079]	N
08/08/2012	22745674	Hager J	06/20/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22745674	Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis.	Coronary heart disease	1,949 Middle Eastern ancestry individuals	2,547 Middle Eastern ancestry individuals	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-G	rs9349379	0	9349379	intron	0	0.349	6E-12	11.22184874961635	(LAD)	   1.19	[1.22-1.44] 	Illumina [513,079]	N
08/08/2012	22745674	Hager J	06/20/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22745674	Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis.	Coronary heart disease	1,949 Middle Eastern ancestry individuals	2,547 Middle Eastern ancestry individuals	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-G	rs9349379	0	9349379	intron	0	0.349	4E-7	6.397940008672037	(RCA)	   1.23	[1.14-1.33] 	Illumina [513,079]	N
08/14/2012	22726844	Kim JW	06/20/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22726844	A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval.	QT interval	6,805 Korean ancestry individuals	7,373 East Asian ancestry individuals	2p22.1	2	40530651	SLC8A1	LOC101929667			101929667			rs13017846-G	rs13017846	0	13017846	intron	0	0.42	8E-14	13.09691001300805		    .07	[0.038-0.100] unit decrease	Affymetrix [352,228]	N
08/14/2012	22726844	Kim JW	06/20/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22726844	A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval.	QT interval	6,805 Korean ancestry individuals	7,373 East Asian ancestry individuals	1q23.3	1	162225948	NOS1AP	NOS1AP			9722			rs4657175-?	rs4657175	0	4657175	intron	0	NR	1E-9	8.999999999999998		   1.71	[1.156-2.261] ms increase	Affymetrix [352,228]	N
08/14/2012	22726844	Kim JW	06/20/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22726844	A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval.	QT interval	6,805 Korean ancestry individuals	7,373 East Asian ancestry individuals	16q21	16	58532400	NDRG4, CNOT1	CNOT1			23019			rs37060-?	rs37060	0	37060	intron	0	NR	1E-7	7		   1.52	[0.957-2.084] ms increase	Affymetrix [352,228]	N
08/30/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV vs. GA)	1,775 European ancestry choroidal neovascularization cases, 819 European ancestry geographic atrophy cases, 	4,515 European and unknown ancestry choroidal neovascularization cases, 868 European and unknown ancestry geographic atrophy cases	10q26.13	10	122454932	ARMS2,HTRA1	ARMS2			387715			rs10490924-T	rs10490924	0	10490924	missense	0	0.438	7E-14	13.15490195998574		   1.38	[NR] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	1q31.3	1	196690107	CFH	CFH			3075			rs1061170-?	rs1061170	0	1061170	missense	0	0.371	1E-108	108		   2.78	[2.5-3.03] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	6	31946403	CFB	CFB			629			rs641153-?	rs641153	0	641153	missense	0	0.899	1E-17	17		   2.22	[1.85-2.63] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	19p13.3	19	6718376	C3	C3			718			rs2230199-C	rs2230199	0	2230199	missense	0	0.193	1E-12	12		   1.61	[1.40-1.85] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	4q25	4	109737911	CF1	PLA2G12A - CFI	81579	3426		        7.83	        2.78	rs10033900-T	rs10033900	0	10033900	Intergenic	1	0.463	6E-9	8.221848749616356		   1.31	[1.19-1.44] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	6p21.33	6	31936027	C2	C2;LOC102060414			717;102060414			rs9332739-?	rs9332739	0	9332739	missense;intron	0	0.955	2E-8	7.698970004336018		   2.08	[1.61-2.7] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	10q26.13	10	122454932	ARMS2,HTRA1	ARMS2			387715			rs10490924-T	rs10490924	0	10490924	missense	0	0.206	2E-138	137.698970004336		   3.67	[3.33-4.05] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	1q31.3	1	196690107	CFH	CFH			3075			rs1061170-?	rs1061170	0	1061170	missense	0	0.371	5E-67	66.30102999566397		   2.78	[2.5-3.13] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	10q26.13	10	122454932	ARMS2, HTRA1	ARMS2			387715			rs10490924-T	rs10490924	0	10490924	missense	0	.206	7E-47	46.15490195998574		   2.52	[2.24-2.83] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	19p13.3	19	6718376	C3	C3			718			rs2230199-C	rs2230199	0	2230199	missense	0	.19	5E-13	12.30102999566398		   1.83	[1.56-2.14] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	6	31946403	CFB	CFB			629			rs641153-?	rs641153	0	641153	missense	0	0.899	2E-9	8.698970004336019		   2.13	[1.69-2.7] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6p21.33	6	31936027	C2	C2;LOC102060414			717;102060414			rs9332739-?	rs9332739	0	9332739	missense;intron	0	0.955	1E-6	5.999999999999999		   2.63	[1.79-3.85] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	4q25	4	109737911	CFI	PLA2G12A - CFI	81579	3426		        7.83	        2.78	rs10033900-T	rs10033900	0	10033900	Intergenic	1	.463	4E-6	5.397940008672037		   1.32	[1.17-1.48] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	6q25.3	6	159650127	SOD2	FLJ27255 - SOD2	401281	6648		       60.96	       28.99	rs2842992-?	rs2842992	0	2842992	Intergenic	1	0.203	3E-7	6.522878745280337		   1.43	[1.25-1.64] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	18q23	18	77147088	MBP	MBP - GALR1	4155	2587		       13.38	      102.96	rs1789110-?	rs1789110	0	1789110	Intergenic	1	0.375	4E-7	6.397940008672037		   1.33	[1.19-1.49] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/15/2012	22705344	Sobrin L	06/15/2012	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/22705344	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (GA)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	8p23.3	8	566479	C80rf42	TDRP - ERICH1	157695	157697		       20.70	       71.05	rs722782-?	rs722782	0	722782	Intergenic	1	0.894	2E-6	5.698970004336018		   1.67	[1.35-2.08] 	Affymetrix & Illumina [6,036,699] (imputed)	N
08/10/2012	22719876	Kawaguchi T	06/14/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22719876	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NR	22q13.31	22	43928847	PNPLA3	PNPLA3			80339			rs738409-G	rs738409	0	738409	missense	0	0.484	1E-10	10		   1.66	[1.43-1.94] 	Illumina [484,751]	N
08/10/2012	22719876	Kawaguchi T	06/14/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22719876	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NR	1p32.3	1	53854664	YIPF1	YIPF1			54432			rs11206226-A	rs11206226	0	11206226	intron	0	0.848	5E-6	5.301029995663981		   1.72	[1.35-2.22] 	Illumina [484,751]	N
08/10/2012	22719876	Kawaguchi T	06/14/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22719876	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NR	4p15.33	4	11501980	HS3ST1	RNA5SP156 - HSP90AB2P	100873422	391634		       87.82	     1834.41	rs1390096-A	rs1390096	0	1390096	Intergenic	1	0.372	3E-6	5.522878745280337		   1.44	[1.24-1.68] 	Illumina [484,751]	N
08/10/2012	22719876	Kawaguchi T	06/14/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22719876	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NR	22q13.31	22	43995806	SAMM50	SAMM50			25813			rs2143571-A	rs2143571	0	2143571	intron	0	0.458	6E-7	6.221848749616355		   1.47	[1.27-1.72] 	Illumina [484,751]	N
08/10/2012	22719876	Kawaguchi T	06/14/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22719876	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NR	22q13.31	22	43998522	PARVB	PARVB			29780			rs2073080-T	rs2073080	0	2073080	nearGene-5	0	0.458	8E-7	6.096910013008056		   1.47	[1.26-1.71] 	Illumina [484,751]	N
08/09/2012	22701019	Sabater-Lleal M	06/14/2012	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/22701019	A genome-wide association study identifies KNG1 as a genetic determinant of plasma factor XI Level and activated partial thromboplastin time.	Factor XI	339 European ancestry individuals from 21 families	658 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,543,887] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	1q24.2	1	169582444	F5, SELP	F5			2153			rs6028-C	rs6028	0	6028	cds-synon	0	NR	3E-9	8.522878745280337		    .23	[0.14-0.31] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	15q25.3	15	86648746	AGBL1	AGBL1			123624			rs2469184-A	rs2469184	0	2469184	intron	0	NR	4E-8	7.397940008672037		    .16	[0.081-0.243] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	6p21.32	6	32371299	C6orf10	C6orf10			10665			rs2050190-A	rs2050190	0	2050190	intron	0	NR	7E-7	6.154901959985743		    .25	[0.17-0.34] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	9q34.2	9	133261662	ABO, LOC653163, SURF2, SURF4, ADAMTS13, C9orf7	ABO			28			rs687621-A	rs687621	0	687621	intron	0	NR	9E-100	99.04575749056066		    .82	[0.73-0.90] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	5q35.3	5	177414338	UIMC1, FGFR4, NSD1, PRELID1, MXD3, LMAN2, RGS14, SLC34A1, PRR7, DBN1, F12, GRK6	F12 - GRK6	2161	2870		        4.76	       12.16	rs2545801-C	rs2545801	0	2545801	Intergenic	1	NR	6E-88	87.22184874961636		   1.68	[1.48-1.88] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	4q35.2	4	186274397	F11	F11			2160			rs1593-A	rs1593	0	1593	intron	0	NR	2E-18	17.69897000433602		    .54	[0.41-0.66] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	4q35.2	4	186286227	F11	F11;F11-AS1			2160;285441			rs2289252-C	rs2289252	0	2289252	intron;ncRNA	0	NR	6E-43	42.22184874961636		    .48	[0.40-0.57] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	3q27.3	3	186672838	AHSG, FETUB, HRG	HRG			3273			rs9898-C	rs9898	0	9898	missense	0	NR	1E-111	111		   1.00	[0.92-1.08] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	3q27.3	3	186742138	KNG1, RFC4, ADIPOQ	KNG1			3827			rs710446-C	rs710446	0	710446	missense	0	NR	2E-203	202.698970004336		   1.18	[1.10-1.26] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Prothrombin time	2,583 European ancestry individuals	986 European ancestry individuals	13q34	13	113105720	F7	F7			2155			rs561241-C	rs561241	0	561241	nearGene-5	0	NR	4E-56	55.39794000867203		    .04	[0.029-0.041] unit increase	Illumina [~2.5 million] (imputed)	N
08/15/2012	22703881	Tang W	06/14/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22703881	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Prothrombin time	2,583 European ancestry individuals	986 European ancestry individuals	20q11.22	20	35135060	EDEM2, TRPC4AP, PROCR, MYH7B,	EDEM2			55741			rs2295888-A	rs2295888	0	2295888	intron	0	NR	5E-13	12.30102999566398		    .02	[0.012-0.028] unit decrease	Illumina [~2.5 million] (imputed)	N
08/08/2012	22694956	Cipriani V	06/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22694956	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	6	32107027	TNXB	TNXB			7148			rs12153855-C	rs12153855	0	12153855	intron	0	0.011	1E-9	8.999999999999998		   1.44	[1.28-1.63] 	Illumina [2,272,849] (imputed)	N
08/08/2012	22694956	Cipriani V	06/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22694956	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.32	6	32203906	NOTCH4	NOTCH4			4855			rs2071277-C	rs2071277	0	2071277	intron	0	0.219	2E-11	10.69897000433602		   1.30	[1.20-1.41] 	Illumina [2,272,849] (imputed)	N
08/08/2012	22694956	Cipriani V	06/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22694956	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	6p21.33	6	31949174	CFB	CFB			629			rs541862-T	rs541862	0	541862	intron	0	0.99	9E-17	16.04575749056067		   1.89	[1.61-2.17] 	Illumina [2,272,849] (imputed)	N
08/08/2012	22694956	Cipriani V	06/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22694956	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	19q13.32	19	44892362	TOMM40	TOMM40			10452			rs2075650-A	rs2075650	0	2075650	intron	0	0.851	8E-8	7.096910013008055		   1.37	[1.22-1.54] 	Illumina [2,272,849] (imputed)	N
08/08/2012	22694956	Cipriani V	06/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22694956	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	10q26.13	10	122454932	ARMS2, HTRA1	ARMS2			387715			rs10490924-T	rs10490924	0	10490924	missense	0	0.21	3E-72	71.52287874528032		   3.00	[2.64-3.40] 	Illumina [2,272,849] (imputed)	N
08/08/2012	22694956	Cipriani V	06/13/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22694956	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	1q31.3	1	196691131	CFH	CFH			3075			rs10801555-A	rs10801555	0	10801555	intron	0	0.40	2E-47	46.69897000433602		   2.33	[2.08-2.63] 	Illumina [2,272,849] (imputed)	N
08/07/2012	22704111	Hotaling JM	06/13/2012	J Urol	http://www.ncbi.nlm.nih.gov/pubmed/22704111	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction	125 European ancestry Erectile dysfunction cases with Type 1 Diabetes, 403 European ancestry non Erectile dysfunction controls with Type 1 Diabetes 	NR	3q13.11	3	105292046	ALCAM	TRNAE27P - ALCAM	100189440	214		     1131.30	       74.67	rs9810233-G	rs9810233	0	9810233	Intergenic	1	0.270	7E-7	6.154901959985743		NR	NR	Illumina [840,354]	N
08/07/2012	22704111	Hotaling JM	06/13/2012	J Urol	http://www.ncbi.nlm.nih.gov/pubmed/22704111	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction	125 European ancestry Erectile dysfunction cases with Type 1 Diabetes, 403 European ancestry non Erectile dysfunction controls with Type 1 Diabetes 	NR	2q31.1	2	172628350	PDK1	PDK1 - RAPGEF4-AS1	5163	91149		        2.73	       94.84	rs836589-A	rs836589	0	836589	Intergenic	1	0.186	2E-6	5.698970004336018		NR	NR	Illumina [840,354]	N
08/07/2012	22704111	Hotaling JM	06/13/2012	J Urol	http://www.ncbi.nlm.nih.gov/pubmed/22704111	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction	125 European ancestry Erectile dysfunction cases with Type 1 Diabetes, 403 European ancestry non Erectile dysfunction controls with Type 1 Diabetes 	NR	6q24.2	6	143758717	PHACTR2	PHACTR2			9749			rs6931865-A	rs6931865	0	6931865	intron	0	0.336	4E-6	5.397940008672037		NR	NR	Illumina [840,354]	N
08/07/2012	22704111	Hotaling JM	06/13/2012	J Urol	http://www.ncbi.nlm.nih.gov/pubmed/22704111	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction	125 European ancestry Erectile dysfunction cases with Type 1 Diabetes, 403 European ancestry non Erectile dysfunction controls with Type 1 Diabetes 	NR	3p22.2	3	36638607	STAC	NBPF21P - DCLK3	205655	85443		         .81	       73.82	rs950146-C	rs950146	0	950146	Intergenic	1	0.491	4E-6	5.397940008672037		NR	NR	Illumina [840,354]	N
08/07/2012	22704111	Hotaling JM	06/13/2012	J Urol	http://www.ncbi.nlm.nih.gov/pubmed/22704111	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction	125 European ancestry Erectile dysfunction cases with Type 1 Diabetes, 403 European ancestry non Erectile dysfunction controls with Type 1 Diabetes 	NR	1q31.3	1	197051528	F13B	F13B			2165			rs2990510-G	rs2990510	0	2990510	intron	0	0.305	6E-6	5.221848749616356		NR	NR	Illumina [840,354]	N
08/07/2012	22704111	Hotaling JM	06/13/2012	J Urol	http://www.ncbi.nlm.nih.gov/pubmed/22704111	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction	125 European ancestry Erectile dysfunction cases with Type 1 Diabetes, 403 European ancestry non Erectile dysfunction controls with Type 1 Diabetes 	NR	3p12.2	3	80816613	SLC25A36	HNRNPA3P8 - GBE1	100129557	2632		      599.35	      673.09	rs9850224-A	rs9850225	0	9850225	Intergenic	1	0.010	5E-8	7.30102999566398		NR	NR	Illumina [840,354]	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	6p21.31	6	33579060	BAK1	BAK1			578			rs210142-C	rs210142	0	210142	intron	0	0.70	9E-16	15.04575749056067		   1.40	[1.25-1.57] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	2q13	2	111039881	NR	ACOXL			55289			rs17483466-?	rs17483466	0	17483466	intron	0	0.80	5E-9	8.301029995663981		   1.43	[1.27-1.61] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	2q37.1	2	230226508	NR	SP110;SP140			3431;11262			rs13397985-?	rs13397985	0	13397985	nearGene-5;intron	0	0.81	2E-7	6.698970004336019		   1.39	[1.23-1.59] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	2q37.3	2	241431686	NR	FARP2			9855			rs757978-T	rs757978	0	757978	missense	0	0.26	3E-6	5.522878745280337		   1.46	[1.25-1.72] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	6p25.3	6	411064	NR	IRF4			3662			rs872071-G	rs872071	0	872071	ncRNA	0	0.53	8E-14	13.09691001300805		   1.47	[1.33-1.63] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	11q24.1	11	123490689	NR	GRAMD1B			57476			rs735665-A	rs735665	0	735665	intron	0	0.20	3E-12	11.52287874528034		   1.52	[1.35-1.72] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	15q23	15	69726651	NR	RPLP1 - GEMIN8P1	6176	100128431		      271.11	       76.46	rs7176508-A	rs7176508	0	7176508	Intergenic	1	0.37	3E-11	10.52287874528034		   1.42	[1.28-1.58] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/07/2012	22700719	Slager SL	06/13/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22700719	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	16q24.1	16	85942053	NR	MIR6774 - LINC01082	102466732	100506542		       23.64	      254.13	rs305061-?	rs305061	0	305061	Intergenic	1	0.73	9E-8	7.045757490560674		   1.33	[1.2-1.49] 	Affymetrix & Illumina [~1,500,000] (imputed)	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	4q34.3	4	179734472	Intergenic	RNA5SP173 - LINC00290	100873437	728081		     1327.64	     1329.62	rs17746001-T	rs17746001	0	17746001	Intergenic	1	NR	3E-7	6.522878745280337		   2.03	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	12q23.3	12	108349043	CMKLR1	CMKLR1 - FICD	1240	11153		        9.73	      166.23	rs17040430-T	rs17040430	0	17040430	Intergenic	1	NR	9E-7	6.045757490560675		   1.89	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	1q42.2	1	234527144	IRF2BP2	TARBP1 - IRF2BP2	6894	359948		       48.03	       77.13	rs271738-A	rs271738	0	271738	Intergenic	1	NR	5E-6	5.301029995663981		   1.32	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	8p22	8	13403027	DLC1	DLC1			10395			rs289585-?	rs289585	0	289585	intron	0	NR	5E-6	5.301029995663981		   1.45	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	4q34.3	4	179734472	Intergenic	RNA5SP173 - LINC00290	100873437	728081		     1327.64	     1329.62	rs17746001-T	rs17746001	0	17746001	Intergenic	1	NR	3E-7	6.522878745280337		   1.75	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	4q34.3	4	179734472	Intergenic	RNA5SP173 - LINC00290	100873437	728081		     1327.64	     1329.62	rs17746001-?	rs17746001	0	17746001	Intergenic	1	NR	3E-7	6.522878745280337		   1.75	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p22.1	6	29931900	MHC, other genes	TRNAI25			100189401			rs2524005-?	rs2524005	0	2524005		0	NR	5E-7	6.30102999566398		   1.32	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	9q22.31	9	92060258	SPTLC1, ROR2	SPTLC1			10558			rs7872515-?	rs7872515	0	7872515	intron	0	NR	6E-7	6.221848749616355		   1.39	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	3q26.32	3	178623794	KCNMB2	KCNMB2			10242			rs2054399-?	rs2054399	0	2054399	intron	0	NR	1E-6	5.999999999999999		   1.22	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	16q13	16	57024670	NLRC5	NLRC5			84166			rs821470-A	rs821470	0	821470	intron	0	NR	3E-6	5.522878745280337		   1.25	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	8p23.1	8	10129145	MSRA	MSRA			4482			rs1484642-C	rs1484642	0	1484642	intron	0	NR	3E-6	5.522878745280337		   1.43	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	10q26.11	10	117422360	Intergenic	PDZD8 - EMX2OS	118987	196047		       46.92	       61.93	rs181500-T	rs181500	0	181500	Intergenic	1	NR	5E-6	5.301029995663981		   1.24	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	5q33.1	5	152908893	NMUR2	LOC101927134			101927134			rs4262150-?	rs4262150	0	4262150	intron	0	NR	7E-6	5.154901959985742		   1.22	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	5q23.1	5	116233060	COMMD10	COMMD10			51397			rs253959-T	rs253959	0	253959	intron	0	NR	8E-6	5.096910013008055		   1.21	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	2q33.3	2	206257058	ZDBF2, GPR1, ADAM23	GPR1-AS			101669764			rs2058710-A	rs2058710	0	2058710	intron	0	NR	9E-6	5.045757490560675		   1.24	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.33	6	30814225	MHC, other genes	LINC00243			401247;100996707			rs886424-?	rs886424	0	886424	ncRNA;missense	0	NR	9E-7	6.045757490560675		   1.37	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	6p21.32	6	32390493	MHC, other genes	HCG23			414764			rs3117099-?	rs3117099	0	3117099	nearGene-5	0	NR	3E-6	5.522878745280337		   1.25	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	6p22.1	6	27742386	MHC	TRNAI25			100189401			rs17693963-?	rs17693963	0	17693963		0	NR	3E-11	10.52287874528034		   1.24	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	10q24.33	10	103146454	NT5C2, CNNM2, other genes	NT5C2			22978			rs11191580-?	rs11191580	0	11191580	intron	0	NR	2E-9	8.698970004336019		   1.23	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	7p22.3	7	1964786	MAD1L1, SNX8, NUDT1, FTSJ2	MAD1L1			8379			rs12666575-?	rs12666575	0	12666575	intron	0	NR	2E-9	8.698970004336019		   1.12	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	5q12.1	5	61435631	Intergenic	ZSWIM6			57688			rs7709645-?	rs7709645	0	7709645	intron	0	NR	4E-8	7.397940008672037		   1.11	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	8q21.3	8	88748082	MMP16	RNA5SP272 - RIPK2	100873525	8767		      351.54	     1009.65	rs7004633-?	rs7004633	0	7004633	Intergenic	1	NR	6E-8	7.221848749616355		   1.15	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	2q37.2	2	235886699	CENTG2	AGAP1			116987			rs13025591-?	rs13025591	0	13025591	intron	0	NR	8E-8	7.096910013008055		   1.11	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	12p13.33	12	2240418	TCF4	CACNA1C			775			rs17597926-?	rs4765905	0	4765905	intron	0	NR	1E-7	7		   1.36	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	12p13.33	12	2240418	CACNA1C	CACNA1C			775			rs4765905-?	rs4765905	0	4765905	intron	0	NR	2E-7	6.698970004336019		   1.11	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	15q22.2	15	61578744	Intergenic	RNA5SP397 - VPS13C	100873650	54832		      841.86	      273.65	rs12592967-?	rs12592967	0	12592967	Intergenic	1	NR	3E-7	6.522878745280337		   1.10	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	11q25	11	130960853	Intergenic	SNX19 - NTM	399979	50863		       44.37	      409.62	rs10894294-?	rs10894294	0	10894294	Intergenic	1	NR	3E-7	6.522878745280337		   1.10	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	1p21.3	1	98087276	has-mir-137, DPYD	NFU1P2 - SNX7	100132699	51375		        9.78	      574.39	rs1198588-?	rs1198588	0	1198588	Intergenic	1	NR	5E-7	6.30102999566398		   1.12	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	1p21.3	1	96648359	PTBP2	NDUFS5P2 - RPL7P9	100286918	653702		       63.57	       30.45	rs12071951-?	rs12071951	0	12071951	Intergenic	1	NR	5E-7	6.30102999566398		   1.14	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	11q24.2	11	125454069	PKNOX2, FEZ1, El24	FEZ1			9638			rs11220082-?	rs11220082	0	11220082	intron	0	NR	7E-7	6.154901959985743		   1.10	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	10q21.2	10	60586880	Intergenic	ANK3			288			rs16915157-?	rs16915157	0	16915157	intron	0	NR	7E-7	6.154901959985743		   1.13	[NR] 	Affymetrix [745,006]	N
08/14/2012	22688191	Bergen SE	06/12/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22688191	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	8p23.2	8	4356657	CSMD1	CSMD1			64478			rs10503256-?	rs10503256	0	10503256	intron	0	NR	9E-7	6.045757490560675		   1.10	[NR] 	Affymetrix [745,006]	N
08/16/2012	22692763	Liu CT	06/12/2012	J Bone Miner Res	http://www.ncbi.nlm.nih.gov/pubmed/22692763	Assessment of gene-by-sex interaction effect on bone mineral density.	Bone mineral density (interaction)	16,297 European ancestry females, 9,056 European ancestry males	17,949 European, East Asian, and Hispanic ancestry females, 6,814 European, East Asian, and Hispanic ancestry males	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [>2.3 million] (imputed)	N
08/16/2012	22693232	Zhou J	06/12/2012	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/22693232	A functional variation in CD55 increases the severity of 2009 pandemic H1N1 influenza A virus infection.	Influenza (severity)	25 Chinese ancestry severe cases, 26 Chinese ancestry controls	152 Chinese ancestry severe cases, 222 Chinese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~1 million]	N
07/26/2012	22694930	Li X	06/11/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22694930	Genome-wide association studies of asthma indicate opposite immunopathogenesis direction from autoimmune diseases.	Asthma	813 European ancestry cases, 1,011 European ancestry controls	TENOR and GABRIEL studies (NR)	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [474,271]	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	1q22	1	156486509	MEF2D	MEF2D			4209			rs3790455-C	rs3790455	0	3790455	intron	0	0.34	7E-11	10.15490195998574		   1.20	[1.14-1.27] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	3p24.1	3	30420911	TGFBR2	RBMS3-AS2 - TGFBR2	100873978	7048		      777.98	      185.59	rs7640543-A	rs7640543	0	7640543	Intergenic	1	0.32	1E-9	8.999999999999998		   1.19	[1.13-1.26] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-?	rs9349379	0	9349379	intron	0	0.62	3E-8	7.522878745280337		   1.16	[1.10-1.23] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	9q33.1	9	116490350	ASTN2	ASTN2			23245			rs6478241-A	rs6478241	0	6478241	intron	0	0.38	4E-8	7.397940008672037		   1.16	[1.10-1.23] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	2q37.1	2	233916448	TRPM8	TRPM8			79054			rs10166942-?	rs10166942	0	10166942	nearGene-5	0	0.82	1E-12	12		   1.28	[1.19-1.37] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	12q13.3	12	57133500	LRP1	LRP1			4035			rs11172113-?	rs11172113	0	11172113	intron	0	0.60	3E-8	7.522878745280337		   1.16	[1.10-1.23] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	2q35	2	216343848	MARCH4	MARCH4			57574			rs6756590-?	rs6756590	0	6756590	intron	0	0.56	1E-6	5.999999999999999		   1.14	[1.08-1.2] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	6q16.1	6	96437010	FHL5	FUT9 - UFL1	10690	23376		      221.40	       84.82	rs11757063-A	rs11757063	0	11757063	Intergenic	1	0.21	6E-8	7.221848749616355		   1.20	[1.12-1.28] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	10q24.33	10	103273258	INA	RPEL1 - INA	729020	9118		       25.24	        3.91	rs1712517-T	rs1712517	0	1712517	Intergenic	1	0.48	9E-6	5.045757490560675		   1.13	[1.07-1.17] 	Illumina [1,246,388] (imputed)	N
08/07/2012	22683712	Freilinger T	06/10/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22683712	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	12q24.33	12	131840694	MMP17	MMP17			4326			rs6598163-G	rs6598163	0	6598163	missense	0	0.48	5E-7	6.30102999566398		   1.15	[1.09-1.21] 	Illumina [1,246,388] (imputed)	N
07/31/2012	22678113	Cox HC	06/08/2012	Neurogenetics	http://www.ncbi.nlm.nih.gov/pubmed/22678113	A genome-wide analysis of 'Bounty' descendants implicates several novel variants in migraine susceptibility.	Migraine	76 Norfolk Island founder cases, 209 Norfolk Island founder controls 	4,705 European ancestry cases, 21,008 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [544,590}	N
08/14/2012	22685421	Fan Q	06/07/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22685421	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Singaporean Chinese ancestry individuals, 2,155 Singaporean Malay ancestry individuals	NA	13q12.11	13	22719894	ZC3H11B	DDX39AP1 - RPL7AP73	646164	100873817		       13.69	       83.40	rs4373767-C	rs373767	0	373767	Intergenic	1	0.30	3E-10	9.522878745280336		    .16	[0.12-0.20] mm decrease	Illumina [456,634]	N
08/14/2012	22685421	Fan Q	06/07/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22685421	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Singaporean Chinese ancestry individuals, 2,155 Singaporean Malay ancestry individuals	NA	2p16.2	2	54491044	SPTBN1	SPTBN1			6711			rs4557020-T	rs4557020	0	4557020	intron	0	0.37	3E-7	6.522878745280337		    .12	[0.081-0.159] mm decrease	Illumina [456,634]	N
08/14/2012	22685421	Fan Q	06/07/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22685421	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Singaporean Chinese ancestry individuals, 2,155 Singaporean Malay ancestry individuals	NA	5q11.1	5	50730631	PARP8	PARP8			79668			rs282544-C	rs282544	0	282544	intron	0	0.35	4E-6	5.397940008672037		    .10	[0.061-0.139] mm decrease	Illumina [456,634]	N
08/14/2012	22685421	Fan Q	06/07/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22685421	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Singaporean Chinese ancestry individuals, 2,155 Singaporean Malay ancestry individuals	NA	2p13.1	2	74712049	SEMA4F	SEMA4F - RPS28P5	10505	100271121		       28.20	       42.62	rs1137-C	rs1137	0	1137	Intergenic	1	0.16	4E-6	5.397940008672037		    .12	[0.061-0.179] mm increase	Illumina [456,634]	N
07/24/2012	22673963	Lasky-Su J	06/07/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22673963	Genome-wide association analysis of circulating vitamin D levels in children with asthma.	Vitamin D levels	422 European ancestry trios with asthmatic children, 150 European ancestry asthmatic child cases	1,108 Hispanic asthmatic child cases	4q13.3	4	71742666	GC	GC			2638			rs2282679-?	rs2282679	0	2282679	intron	0	0.29	2E-14	13.69897000433602		NR	NR	Illumina [547,645]	N
08/07/2012	22683750	Sinner MF	06/06/2012	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/22683750	A meta-analysis of genome-wide association studies of the electrocardiographic early repolarization pattern.	Cardiac repolarization	7,482 European ancestry individuals	7,151 European ancestry individuals	17q25.2	17	77008131	MGAT5B, SEC14L	MGAT5B - SNHG20	146664	654434		       57.74	       80.51	rs11653989-T	rs11653989	0	11653989	Intergenic	1	0.917	3E-6	5.522878745280337		   1.61	[1.32-2.0] 	Affymetrix & Illumina [2,523,555] (imputed)	N
08/07/2012	22683750	Sinner MF	06/06/2012	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/22683750	A meta-analysis of genome-wide association studies of the electrocardiographic early repolarization pattern.	Cardiac repolarization	7,482 European ancestry individuals	7,151 European ancestry individuals	10q26.11	10	117450864	PDZD8, EMX2	LOC101927731			101927731			rs6585436-C	rs6585436	0	6585436	intron	0	0.983	6E-6	5.221848749616356		   2.08	[1.52-2.86] 	Affymetrix & Illumina [2,523,555] (imputed)	N
08/07/2012	22683750	Sinner MF	06/06/2012	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/22683750	A meta-analysis of genome-wide association studies of the electrocardiographic early repolarization pattern.	Cardiac repolarization	7,482 European ancestry individuals	7,151 European ancestry individuals	1p13.2	1	111921754	KCND3	KCND3			3752			rs17029069-T	rs17029069	0	17029069	intron	0	0.356	8E-6	5.096910013008055		   1.29	[1.15-1.44] 	Affymetrix & Illumina [2,523,555] (imputed)	N
07/19/2012	22664479	Han JY	06/05/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22664479	A genome-wide association study for irinotecan-related severe toxicities in patients with advanced non-small-cell lung cancer.	Response to irinotecan in non-small-cell lung cancer	101 non-small-cell lung cancer cases	146 non-small-cell lung cancer cases	8q13.2	8	68476982	C8orf34	C8orf34			116328			rs1517114-C	rs1517114	0	1517114	intron	0	0.12	9E-6	5.045757490560675	(G3D)	   4.10	[2.10-8.00] 	Affyemtrix [312,230]	N
07/19/2012	22664479	Han JY	06/05/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22664479	A genome-wide association study for irinotecan-related severe toxicities in patients with advanced non-small-cell lung cancer.	Response to irinotecan in non-small-cell lung cancer	101 non-small-cell lung cancer cases	146 non-small-cell lung cancer cases	20p12.3	20	8297296	PLCB1	PLCB1			23236			rs2745761-C	rs2745761	0	2745761	intron	0	0.072	6E-6	5.221848749616356	(G3D)	   4.80	[2.30-10.0] 	Affyemtrix [312,230]	N
08/15/2012	22672568	Heit JA	06/05/2012	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/22672568	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 Other ancestry cases, 1,418 Other ancestry controls	1q24.2	1	169549811	F5	F5			2153			rs6025-T	rs6025	0	6025	missense	0	0.063	2E-22	21.69897000433602		   3.57	[2.76-4.60] 	Illumina [~2.5 million] (imputed)	N
08/15/2012	22672568	Heit JA	06/05/2012	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/22672568	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 Other ancestry cases, 1,418 Other ancestry controls	9q34.2	9	133279294	ABO	ABO - SURF6	28	6838		        4.08	       51.41	rs495828-T	rs495828	0	495828	Intergenic	1	0.272	3E-16	15.52287874528034		   1.65	[1.46-1.86] 	Illumina [~2.5 million] (imputed)	N
08/15/2012	22672568	Heit JA	06/05/2012	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/22672568	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 Other ancestry cases, 1,418 Other ancestry controls	1q24.2	1	169165889	NME7	NME7			29922			rs16861990-C	rs16861990	0	16861990	intron	0	0.099	2E-12	11.69897000433602		   2.02	[1.66-2.45] 	Illumina [~2.5 million] (imputed)	N
08/15/2012	22672568	Heit JA	06/05/2012	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/22672568	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 Other ancestry cases, 1,418 Other ancestry controls	9q34.2	9	133257521	ABO	ABO			28			rs8176719-G	rs8176719	0	8176719		0	0.419	6E-12	11.22184874961635		   1.47	[1.32-1.64] 	Illumina [~2.5 million] (imputed)	N
08/15/2012	22672568	Heit JA	06/05/2012	J Thromb Haemost	http://www.ncbi.nlm.nih.gov/pubmed/22672568	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 Other ancestry cases, 1,418 Other ancestry controls	9q34.2	9	133266456	ABO	ABO			28			rs2519093-A	rs2519093	0	2519093	intron	0	0.243	8E-16	15.09691001300805		   1.69	[1.48-1.91] 	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	20q12	20	39672165	Intergenic	ATG3P1 - HSPE1P1	100135756	140895		      342.17	      260.76	rs6016142-T	rs6016142	0	6016142	Intergenic	1	0.11	6E-8	7.221848749616355		    .18	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	15q21.2	15	51242350	CYP19A1, MIR4713	CYP19A1;MIR4713			1588;100616369			rs727479-C	rs727479	0	727479	intron;nearGene-3	0	0.34	5E-7	6.30102999566398		    .11	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	2p23.1	2	31251376	EHD3	EHD3			30845			rs597800-C	rs597800	0	597800	intron	0	0.15	5E-7	6.30102999566398		    .15	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	7p14.3	7	30043405	FKBP14, PLEKHA8	PLEKHA8			84725			rs10488084-C	rs10488084	0	10488084	intron	0	0.08	2E-6	5.698970004336018		    .18	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	11q12.3	11	61944659	BEST1, FTH1	RAB3IL1 - BEST1	5866	7439		       24.39	        5.23	rs2727261-T	rs2727261	0	2727261	Intergenic	1	0.09	3E-6	5.522878745280337		    .16	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	19q12	19	31420223	Intergenic	TSHZ3 - THEG5	57616	100507527		       70.94	      167.97	rs11880316-A	rs11880316	0	11880316	Intergenic	1	0.01	4E-6	5.397940008672037		    .41	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	18q22.3	18	75075090	ZNF407	ZNF407 - ZADH2	55628	284273		        9.42	      122.23	rs17056274-G	rs17056274	0	17056274	Intergenic	1	0.01	4E-6	5.397940008672037		    .66	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry females	NA	3p26.3	3	1581709	Intergenic	CNTN6 - RPL23AP38	27255	391504		      178.10	       14.03	rs402675-A	rs402675	0	402675	Intergenic	1	0.50	6E-6	5.221848749616356		    .10	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	17p13.1	17	7634474	FXR2, SHBG, SAT2, ATP1B2	SAT2 - ATP1B2	112483	482		        6.60	       16.46	rs727428-T	rs727428	0	727428	Intergenic	1	0.42	2E-16	15.69897000433602		    .13	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	5q14.3	5	89813933	Intergenic	MEF2C-AS1 - MIR3660	101929423	100500825		      781.55	      202.69	rs10514317-T	rs10514317	0	10514317	Intergenic	1	0.12	7E-7	6.154901959985743		    .13	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	2q37.3	2	241073314	SNED1, MTERFD2	SNED1;MTERFD2			25992;130916			rs6721345-A	rs6721345	0	6721345	missense;UTR-3	0	0.01	3E-6	5.522878745280337		   1.13	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	1q23.3	1	163987266	Intergenic	RNA5SP63 - NMNAT1P2	100873298	100129160		      477.67	      355.74	rs424950-C	rs424950	0	424950	Intergenic	1	0.48	5E-6	5.301029995663981		    .08	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	17q22	17	57746191	Intergenic	CCDC182			101927581			rs8077059-C	rs8077059	0	8077059	nearGene-5	0	0.25	5E-6	5.301029995663981		    .08	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	3p12.3	3	76435032	Intergenic	ROBO2			6092			rs3849491-T	rs3849491	0	3849491	intron	0	0.48	6E-6	5.221848749616356		    .07	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	10p15.1	10	4108929	Intergenic	MIR6078 - LINC00702	102464829	100652988		      117.67	       97.95	rs10795130-G	rs10795130	0	10795130	Intergenic	1	0.13	7E-6	5.154901959985742		    .10	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry females	NA	16q12.2	16	53994059	FTO	FTO			79068			rs12596210-C	rs12596210	0	12596210	intron	0	0.12	9E-6	5.045757490560675		    .12	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry females	NA	1p36.12	1	22247449	Intergenic	WNT4 - MIR4418	54361	100616433		      104.42	       18.79	rs909814-T	rs909814	0	909814	Intergenic	1	0.39	9E-7	6.045757490560675		    .10	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry females	NA	4q35.2	4	189720016	Intergenic	LINC01262 - FRG1	101928971	2483		       58.53	      220.80	rs11132733-T	rs11132733	0	11132733	Intergenic	1	0.17	3E-6	5.522878745280337		    .23	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry females	NA	17p12	17	12734054	MYOCD	MYOCD			93649			rs9905820-G	rs9905820	0	9905820	intron	0	0.42	4E-6	5.397940008672037		    .09	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry females	NA	1q41	1	216459606	Intergenic	MRPS18BP1 - ESRRG	359762	2104		      257.78	       43.64	rs10495024-C	rs10495024	0	10495024	Intergenic	1	0.36	6E-6	5.221848749616356		    .10	[NR] unit decrease	Illumina [~2.5 million] (imputed)	N
07/27/2012	22675492	Prescott J	06/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22675492	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry females	NA	1p33	1	46819251	CYP4B1	CYP4B1			1580			rs12059860-C	rs12059860	0	12059860	UTR-3	0	0.01	8E-6	5.096910013008055		    .62	[NR] unit increase	Illumina [~2.5 million] (imputed)	N
07/25/2012	22665904	Willis JA	06/04/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22665904	A replication study and genome-wide scan of single-nucleotide polymorphisms associated with pancreatic cancer risk and overall survival.	Pancreatic cancer	252 European ancestry cases	798 European ancestry cases, 21 African American cases, 10 East Asian cases, 4 Asian Indian cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [301,250]	N
08/16/2012	22856363	Ousdal OT	06/01/2012	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22856363	Associations between variants near a monoaminergic pathways gene (PHOX2B) and amygdala reactivity: a genome-wide functional imaging study.	Amygdala reactivity	224 European ancestry individuals	50 European ancestry individuals, 13 African American individuals, 29 Asian ancestry individuals, 7 other ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [546,381]	N
07/19/2012	22661486	Ulmer M	06/01/2012	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22661486	Genome-wide analysis of central corneal thickness in primary open-angle glaucoma cases in the NEIGHBOR and GLAUGEN consortia.	Central corneal thickness	973 European ancestry cases, 144 European ancestry controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [480,304]	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	1p36.22	1	10973025	TARDBP	C1orf127			148345			rs12565727-A	rs12565727	0	12565727	intron	0	0.789	9E-11	10.04575749056067		   1.33	[1.22-1.45] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	2q37.3	2	238785990	HDAC4	LINC01107 - TWIST2	151171	117581		      230.49	       62.04	rs9287638-A	rs9287638	0	9287638	Intergenic	1	0.562	1E-12	12		   1.31	[1.21-1.41] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	7p21.1	7	18838251	HDAC9	HDAC9			9734			rs2073963-G	rs2073963	0	2073963	intron	0	0.530	1E-12	12		   1.29	[1.20-1.38] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	7q11.22	7	69146973	AUTS2	RNA5SP231 - AUTS2	100873489	26053		      422.93	      451.95	rs6945541-C	rs6945541	0	6945541	Intergenic	1	0.539	2E-9	8.698970004336019		   1.27	[1.18-1.38] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	17q21.31	17	45846853	Intergenic	SPPL2C;MAPT-AS1			162540;100128977			rs12373124-T	rs12373124	0	12373124	missense;intron	0	0.438	5E-10	9.301029995663981		   1.33	[1.21-1.45] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	18q12.3	18	45220183	SETBP1	SLC14A2			8170			rs10502861-C	rs10502861	0	10502861	intron	0	0.775	3E-9	8.522878745280337		   1.28	[1.18-1.39] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	20p11.22	20	22056937	PAX1, FOXA2	LOC100270679			100270679			rs6047844-T	rs6047844	0	6047844	intron	0	0.460	2E-39	38.69897000433601		   1.60	[1.49-1.72] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/15/2012	22693459	Li R	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693459	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NR	Xq12	23	67343176	AR	EDA2R - AR	60401	367		      703.88	      200.86	rs2497938-T	rs2497938	0	2497938	Intergenic	1	0.850	2E-91	90.69897000433602		   2.20	[2.04-2.37] 	Affymetrix & Illumina [2,391,230] (imputed)	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p21.32	6	32717773	HLA-DQA2	 - 						rs3916765-A	rs3916765	0	3916765	Intergenic	1	0.12	1E-6	5.999999999999999	(Lean)	   1.21	[1.12-1.31] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	18p11.31	18	7068463	LAMA1	LAMA1			284217			rs8090011-G	rs8090011	0	8090011	intron	0	0.38	8E-9	8.096910013008056	(Lean)	   1.13	[1.09-1.18] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	15q24.3	15	77454848	HMG20A	HMG20A			10363			rs7178572-G	rs7178572	0	7178572	intron	0	0.70	1E-8	8	(Obese)	   1.11	[1.07-1.15] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.29	2E-40	39.69897000433601	(Lean)	   1.58	[1.47-1.68] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p22.3	6	20686342	CDKAL1	CDKAL1			54901			rs7766070-A	rs7766070	0	7766070	intron	0	0.27	7E-10	9.154901959985741	(Lean)	   1.26	[1.17-1.35] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	8q24.11	8	117172786	SLC30A8	SLC30A8			169026			rs3802177-G	rs3802177	0	3802177	UTR-3	0	0.68	4E-8	7.397940008672037	(Lean)	   1.23	[1.15-1.33] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	3q21.1	3	123346931	ADCY5	ADCY5			111			rs11708067-A	rs11708067	0	11708067	intron	0	0.78	6E-8	7.221848749616355	(Lean)	   1.25	[1.15-1.35] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.29	4E-21	20.39794000867204	(Obese)	   1.26	[1.20 - 1.32] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	16q12.2	16	53786615	FTO	FTO			79068			rs9939609-A	rs9939609	0	9939609	intron	0	0.40	1E-20	20	(Obese)	   1.25	[1.19-1.30] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	6p22.3	6	20686342	CDKAL1	CDKAL1			54901			rs7766070-A	rs7766070	0	7766070	intron	0	0.27	6E-11	10.22184874961635	(Obese)	   1.21	[1.14-1.28] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	10q23.33	10	92705802	HHEX	HHEX - EXOC6	3087	54536		       10.15	      121.03	rs5015480-C	rs5015480	0	5015480	Intergenic	1	0.57	2E-9	8.698970004336019	(Obese)	   1.18	[1.11-1.23] 	NR	N
08/07/2012	22693455	Perry JR	05/31/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22693455	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	3q27.2	3	185793899	IG2BP2	IGF2BP2			10644			rs4402960-T	rs4402960	0	4402960	intron	0	0.31	3E-9	8.522878745280337	(Obese)	   1.15	[1.10-1.21] 	NR	N
07/19/2012	22648509	Wang KS	05/31/2012	J Mol Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/22648509	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NR	11q24.2	11	125434113	PKNOX2	PKNOX2 - FEZ1	63876	9638		         .72	       11.63	rs1783925-?	rs1783925	0	1783925	Intergenic	1	0.70	4E-7	6.397940008672037		   1.39	[NR] 	Affymetrix [729,454]	N
07/19/2012	22648509	Wang KS	05/31/2012	J Mol Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/22648509	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NR	17q24.3	17	70882346	KCNJ2	CALM2P1 - CASC17	100128390	101928165		      639.97	      215.43	rs1015657-?	rs1015657	0	1015657	Intergenic	1	0.54	2E-6	5.698970004336018		   1.32	[NR] 	Affymetrix [729,454]	N
07/19/2012	22648509	Wang KS	05/31/2012	J Mol Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/22648509	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NR	11q21	11	97088525	JRKL	JRKL-AS1 - RNA5SP347	100874053	100873609		      581.65	      568.94	rs11224899-T	rs11224899	0	11224899	Intergenic	1	0.04	2E-6	5.698970004336018		   1.90	[NR] 	Affymetrix [729,454]	N
07/19/2012	22648509	Wang KS	05/31/2012	J Mol Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/22648509	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NR	7q36.2	7	155178759	INSIG1	HTR5A - INSIG1	3361	3638		       91.37	      119.02	rs10263087-C	rs10263087	0	10263087	Intergenic	1	0.09	7E-6	5.154901959985742		   1.55	[NR] 	Affymetrix [729,454]	N
07/19/2012	22648509	Wang KS	05/31/2012	J Mol Neurosci	http://www.ncbi.nlm.nih.gov/pubmed/22648509	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NR	1p34.3	1	34823438	GJA4	GJA4 - SMIM12	2701	113444		       27.69	       26.92	rs7526035-?	rs7526035	0	7526035	Intergenic	1	0.54	9E-6	5.045757490560675		   1.29	[NR] 	Affymetrix [729,454]	N
07/17/2012	22658654	Chung SJ	05/30/2012	Parkinsonism Relat Disord	http://www.ncbi.nlm.nih.gov/pubmed/22658654	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NR	8p11.21	8	40196086	C8orf4	C8orf4 - ZMAT4	56892	79698		       40.78	      334.50	rs10958605-?	rs10958605	0	10958605	Intergenic	1	NR	2E-6	5.698970004336018	(motor outcome)	   1.81	[1.42-2.31] 	NR [198,345]	N
07/17/2012	22658654	Chung SJ	05/30/2012	Parkinsonism Relat Disord	http://www.ncbi.nlm.nih.gov/pubmed/22658654	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NR	10q26.2	10	127880410	CLRN3	CLRN3			119467			rs6482992-?	rs6482992	0	6482992	intron	0	NR	4E-6	5.397940008672037	(congnitive outcome)	   2.03	[1.47-2.79] 	NR [198,345]	N
07/17/2012	22658654	Chung SJ	05/30/2012	Parkinsonism Relat Disord	http://www.ncbi.nlm.nih.gov/pubmed/22658654	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NR	4q21.1	4	75556520	C4orf26	C4orf26			152816			rs17000647-?	rs17000647	0	17000647	intron	0	NR	5E-6	5.301029995663981	(cognitive outcome)	   5.58	[3.00-10.38] 	NR [198,345]	N
07/17/2012	22658654	Chung SJ	05/30/2012	Parkinsonism Relat Disord	http://www.ncbi.nlm.nih.gov/pubmed/22658654	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NR	5q23.2	5	126846170	LMNB1	LMNB1 - MARCH3	4001	115123		        9.15	       21.54	rs959573-?	rs959573	0	959573	Intergenic	1	NR	5E-6	5.301029995663981	(cognitive outcome)	   1.92	[1.49-2.50] 	NR [198,345]	N
07/17/2012	22658654	Chung SJ	05/30/2012	Parkinsonism Relat Disord	http://www.ncbi.nlm.nih.gov/pubmed/22658654	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NR	17p13.1	17	8227549	C17orf68	CTC1			80169			rs3027247-?	rs3027247	0	3027247	ncRNA	0	NR	9E-6	5.045757490560675	(cognitive outcome)	   1.89	[1.41-2.50] 	NR [198,345]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	1p36.22	1	9351410	SPSB1	SPSB1			80176			rs11121382-C	rs11121382	0	11121382	intron	0	NR	4E-6	5.397940008672037		    .10	[0.056-0.142] unit decrease	Affymetrix [736,996]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	4q24	4	105347437	TET2, PPA2	TET2 - PPA2	54790	27068		       67.63	       21.64	rs2647264-G	rs2647264	0	2647264	Intergenic	1	NR	9E-6	5.045757490560675		    .17	[0.092-0.238] unit increase	Affymetrix [736,996]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	5q31.1	5	135227467	PITX1,H2AFY	C5orf66			100996485			rs634308-G	rs634308	0	634308	intron	0	NR	4E-6	5.397940008672037		    .10	[0.057-0.143] unit decrease	Affymetrix [736,996]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	6p21.32	6	32713899	HLA-DRB1,HLA-DQA1	TRNAI25			100189401			rs3104402-A	rs3104402	0	3104402		0	NR	6E-6	5.221848749616356		    .17	[0.094-0.236] unit decrease	Affymetrix [736,996]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	9q33.1	9	117162816	ASTN2	ASTN2			23245			rs6478282-A	rs6478282	0	6478282	intron	0	NR	6E-6	5.221848749616356		    .10	[0.058-0.144] unit increase	Affymetrix [736,996]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	13q14.3	13	52943749	PCDH8,OLFM4	PCDH8 - OLFM4	5100	10562		       95.11	       84.99	rs732949-C	rs732949	0	732949	Intergenic	1	NR	8E-6	5.096910013008055		    .17	[0.093-0.239] unit increase	Affymetrix [736,996]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	18q21.2	18	51164249	SMAD4, MEX3C	SRSF10P1 - MEX3C	100130799	51320		        4.87	       10.30	rs7230711-C	rs7230711	0	7230711	Intergenic	1	NR	1E-6	5.999999999999999		    .16	[0.097-0.227] unit decrease	Affymetrix [736,996]	N
07/17/2012	22658931	Pajewski NM	05/30/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22658931	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine 	726 European ancestry individuals	NR	9p21.1	9	32755030	TAF1L, TMEM215	RPS11P4 - TMEM215	100271052	401498		       27.57	       28.47	rs10758161-G	rs10758161	0	10758161	Intergenic	1	NR	8E-6	5.096910013008055		    .16	[0.088-0.230] unit decrease	Affymetrix [736,996]	N
07/19/2012	22666496	Shiffman D	05/30/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22666496	Genome-wide study of gene variants associated with differential cardiovascular event reduction by pravastatin therapy.	Response to statin therapy	667 European ancestry event individuals, 2,246 European ancestry non-event individuals, 18 African American event individuals, 60 African American non-event individuals, 20 Hispanic event individuals, 65 Hispanic non-event individuals, 6 Asian, Pacific or other ancestry event individuals, 27 Asian, Pacific or other ancestry non-event individuals	590 individuals with an event, 4,654 individuals without an event	8q13.1	8	66062017	DNAJC5B, TRIM55, CRH	DNAJC5B			85479			rs13279522-?	rs13279522	0	13279522	intron	0	NR	5E-7	6.30102999566398		   1.59	[1.33-1.92] 	Illumina [657,366]	N
07/17/2012	22634755	Dunlop MG	05/27/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22634755	Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.	Colorectal cancer	8,323 European ancestry cases, 9,457 European ancestry controls	19,513 European ancestry cases, 17,657 European ancestry controls, 1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	6p21.2	6	36655123	CDKN1A	TRNAI25			100189401			rs1321311-?	rs1321311	0	1321311		0	NR	1E-10	10		   1.10	[1.07-1.13] 	Illumina [NR] (imputed)	N
07/17/2012	22634755	Dunlop MG	05/27/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22634755	Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.	Colorectal cancer	8,323 European ancestry cases, 9,457 European ancestry controls	19,513 European ancestry cases, 17,657 European ancestry controls, 1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	11q13.4	11	74634505	POLD3	POLD3			10714			rs3824999-?	rs3824999	0	3824999	intron	0	NR	4E-10	9.397940008672037		   1.08	[1.05-1.10] 	Illumina [NR] (imputed)	N
07/17/2012	22634755	Dunlop MG	05/27/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22634755	Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.	Colorectal cancer	8,323 European ancestry cases, 9,457 European ancestry controls	19,513 European ancestry cases, 17,657 European ancestry controls, 1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	Xp22.2	23	9783434	SHROOM2	GPR143 - SHROOM2	4935	357		       17.47	        3.02	rs5934683-?	rs5934683	0	5934683	Intergenic	1	NR	7E-10	9.154901959985741		   1.07	[1.04-1.10] 	Illumina [NR] (imputed)	N
07/17/2012	22637743	Wei S	05/27/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22637743	Genome-wide gene-environment interaction analysis for asbestos exposure in lung cancer susceptibility.	Lung cancer-asbestos exposure interaction	1,154 European ancestry cases, 1,137 European ancestry controls	NR	2q34	2	208713876	PTHR2	LOC101927960			101927960			rs13383928-C	rs13383928	0	13383928	intron	0	0.04	2E-6	5.698970004336018		NR	NR	Illumina [307,944]	N
07/17/2012	22637743	Wei S	05/27/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22637743	Genome-wide gene-environment interaction analysis for asbestos exposure in lung cancer susceptibility.	Lung cancer-asbestos exposure interaction	1,154 European ancestry cases, 1,137 European ancestry controls	NR	16p13.3	16	4951379	PPL	PPL - SEC14L5	5493	9717		       14.24	        6.94	rs9635542-G	rs9635542	0	9635542	Intergenic	1	0.10	4E-6	5.397940008672037		NR	NR	Illumina [307,944]	N
07/13/2012	22628157	Levine AJ	05/24/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22628157	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia 	1,287 European ancestry HIV-infected males	NA	1p31.1	1	83024161	Intergenic	ST13P20 - ARF4P5	729828	100316867		     1301.10	      548.56	rs12742923-T	rs12742923	0	12742923	Intergenic	1	NR	8E-7	6.096910013008056	(NCI)	NR	NR	Illumina [~2.5 million] (imputed)	N
07/13/2012	22628157	Levine AJ	05/24/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22628157	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia 	1,287 European ancestry HIV-infected males	NA	2p22.1	2	40168938	SLC8A1	SLC8A1;SLC8A1-AS1			6546;100128590			rs404005-T	rs404005	0	404005	intron;intron	0	NR	3E-7	6.522878745280337	(SPEED)	NR	NR	Illumina [~2.5 million] (imputed)	N
07/13/2012	22628157	Levine AJ	05/24/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22628157	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia 	1,287 European ancestry HIV-infected males	NA	10q11.21	10	44029227	Intergenic	LINC00841 - CXCL12	283033	6387		       59.32	      340.93	rs17154929-T	rs17154929	0	17154929	Intergenic	1	NR	1E-7	7	(SPEED)	NR	NR	Illumina [~2.5 million] (imputed)	N
07/13/2012	22628157	Levine AJ	05/24/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22628157	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia 	1,287 European ancestry HIV-infected males	NA	13q33.1	13	101348594	NALCN	NALCN			259232			rs7996217-T	rs7996217	0	7996217	intron	0	NR	7E-7	6.154901959985743	(SPEED)	NR	NR	Illumina [~2.5 million] (imputed)	N
07/13/2012	22628180	Luciano M	05/24/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22628180	Genome-wide association uncovers shared genetic effects among personality traits and mood states.	Personality dimensions	6,268 European ancestry individuals	9,244 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~2.5 million] (imputed)	N
07/11/2012	22633400	Kosova G	05/23/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22633400	Genome-wide association study identifies candidate genes for male fertility traits in humans.	Male fertility	269 Hutterite males	72 Hispanic males, 32 African American males, 11 Middle Eastern ancestry males, 5 European ancestry males, 3 Asian ancestry males	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [248,210]	N
08/14/2012	22832964	David SP	05/22/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832964	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NR	15q25.1	15	78559273	CHRNA5	PSMA4 - CHRNA5	5685	1138		       10.05	        6.25	rs2036527-A	rs2036527	0	2036527	Intergenic	1	0.22	2E-8	7.698970004336018	(CPD)	    .04	[0.026-0.054] unit increase	Affymetrix & Illumina [~2.9 million] (imputed)	N
08/14/2012	22832964	David SP	05/22/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832964	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NR	1q44	1	244369912	C1orf100	C1orf100			200159			rs3101457-A	rs3101457	0	3101457	intron	0	0.75	3E-7	6.522878745280337	(CPD)	    .04	[0.025-0.057] unit increase	Affymetrix & Illumina [~2.9 million] (imputed)	N
08/14/2012	22832964	David SP	05/22/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832964	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NR	15q12	15	26178900	LOC503519	LINC00929 - GABRB3	503519	2562		       45.86	      364.65	rs547843-C	rs547843	0	547843	Intergenic	1	0.65	6E-7	6.221848749616355	(CPD)	    .04	[0.021-0.049] unit decrease	Affymetrix & Illumina [~2.9 million] (imputed)	N
08/14/2012	22832964	David SP	05/22/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832964	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NR	15q25.1	15	78571130	CHRNA5	CHRNA5			1138			rs667282-C	rs667282	0	667282	intron	0	0.29	2E-7	6.698970004336019	(CPD)	    .03	[0.021-0.045] unit increase	Affymetrix & Illumina [~2.9 million] (imputed)	N
08/14/2012	22832964	David SP	05/22/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832964	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NR	10q22.1	10	72046530	SPOCK2	CHST3 - SPOCK2	9469	9806		       32.97	       12.50	rs1678618-A	rs1678618	0	1678618	Intergenic	1	0.74	8E-7	6.096910013008056	(AOI)	    .06	[0.036-0.084] unit decrease	Affymetrix & Illumina [~2.9 million] (imputed)	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2p14	2	68132765	WDR92	WDR92			116143			rs4078978-A	rs4078978	0	4078978	intron	0	NR	2E-18	17.69897000433602	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	5q31.2	5	139471320	ECSM2, TMEM173	ECSCR - TMEM173	641700	340061		        8.59	        4.21	rs13181561-G	rs13181561	0	13181561	Intergenic	1	NR	3E-14	13.52287874528034	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	Xq27.3	23	146667390	LOC100128265	ELL2P4 - CXorf51B	100128690	100133053		      111.62	      142.39	rs381365-A	rs381365	0	381365	Intergenic	1	NR	2E-12	11.69897000433602	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	4q31.22	4	145932013	ZNF827	ZNF827			152485			rs2048161-A	rs2048161	0	2048161	intron	0	NR	6E-12	11.22184874961635	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	14q23.1	14	60841619	MNAT1	MNAT1			4331			rs6573333-A	rs6573333	0	6573333	intron	0	NR	3E-10	9.522878745280336	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	Xq28	23	150467029	MAMLD1	MAMLD1			10046			rs17252936-G	rs17252936	0	17252936	intron	0	NR	6E-10	9.221848749616356	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	12q13.3	12	56434272	TIMELESS	TIMELESS			8914			rs11171846-A	rs11171846	0	11171846	intron	0	NR	6E-10	9.221848749616356	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	1p13.2	1	111849738	KCND3	KCND3			3752			rs12044963-A	rs12044963	0	12044963	intron	0	NR	9E-10	9.045757490560675	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3q25.2	3	153466867	LOC152118	RAP2B - C3orf79	5912	152118		      296.24	       17.63	rs6778194-C	rs6778194	0	6778194	Intergenic	1	NR	2E-9	8.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2q36.3	2	227051208	COL4A4	COL4A4			1286			rs2272205-G	rs2272205	0	2272205	intron	0	NR	3E-9	8.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	9q33.2	9	121189639	RAB14	RAB14			51552			rs9408928-G	rs9408928	0	9408928	intron	0	NR	4E-9	8.397940008672036	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	15q12	15	25649511	ATP10A	UBE3A - ATP10A	7337	57194		      210.47	       29.20	rs6576443-A	rs6576443	0	6576443	Intergenic	1	NR	6E-9	8.221848749616356	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	Xp22.11	23	22129934	PHEX	PHEX			5251			rs1540283-G	rs1540283	0	1540283	intron	0	NR	9E-9	8.045757490560675	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2q14.3	2	122468047	LOC728241	TSN - CNTNAP5	7247	129684		      700.19	     1557.24	rs17007761-A	rs17007761	0	17007761	Intergenic	1	NR	1E-8	8	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	6p22.1	6	29466637	OR2H1	TRNAI25			100189401			rs4713226-A	rs4713226	0	4713226		0	NR	2E-8	7.698970004336018	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2q23.3	2	150869278	LOC344332	RND3 - FABP5P10	390	344332		      381.58	      316.88	rs10195263-G	rs10195263	0	10195263	Intergenic	1	NR	3E-8	7.522878745280337	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	9q33.2	9	121152596	CEP110	CNTRL			11064			rs9408926-A	rs9408926	0	9408926	cds-synon	0	NR	4E-8	7.397940008672037	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	14q22.2	14	53700754	BMP4	RPS3AP46 - MIR5580	100271596	100847076		       87.37	      247.67	rs210359-A	rs210359	0	210359	Intergenic	1	NR	8E-8	7.096910013008055	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2p22.3	2	33076880	LTBP1	LTBP1			4052			rs542631-A	rs542631	0	542631	intron	0	NR	1E-7	7	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	5q31.2	5	139569777	UBE2D2	UBE2D2			7322			rs261532-A	rs261532	0	261532	intron	0	NR	3E-7	6.522878745280337	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3q28	3	188866891	LPP	LPP			4026			rs13067593-G	rs13067593	0	13067593	intron	0	NR	8E-8	7.096910013008055	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	Xp22.11	23	23365327	PTCHD1	PTCHD1			139411			rs5925760-A	rs5925760	0	5925760	intron	0	NR	1E-7	7	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	Xq25	23	124939813	ODZ1	TENM1			10178			rs7060947-G	rs7060947	0	7060947	intron	0	NR	1E-7	7	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	10p15.3	10	572745	DIP2C	DIP2C			22982			rs17221323-G	rs17221323	0	17221323	intron	0	NR	1E-7	7	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	21q22.3	21	45745515	LOC100129027	SLC19A1 - PCBP3	6573	54039		      203.04	      104.45	rs8127571-A	rs8127571	0	8127571	Intergenic	1	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	1p13.3	1	110491187	CYMP	LOC440602;CYMP			440602;643160			rs4839431-A	rs4839431	0	4839431	nearGene-5;ncRNA	0	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	18q21.2	18	50997791	ELAC1	ELAC1 - SMAD4	55520	4089		        9.67	       32.42	rs9807334-A	rs9807334	0	9807334	Intergenic	1	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	4p13	4	42451236	ATP8A1	ATP8A1			10396			rs10517025-A	rs10517025	0	10517025	intron	0	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	13q22.1	13	74421523	hCG_1820717	LINC00381			100874151			rs17714988-G	rs17714988	0	17714988	intron	0	NR	3E-7	6.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	6q23.2	6	134255373	SGK1	SGK1			6446			rs9493873-G	rs9493873	0	9493873	intron	0	NR	4E-7	6.397940008672037	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	9q21.33	9	87594222	DAPK1	DAPK1			1612			rs3095748-G	rs3095748	0	3095748	intron	0	NR	5E-7	6.30102999566398	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	19q13.43	19	55939683	NLRP13, NLRP8	NLRP13 - NLRP8	126204	126205		        7.35	        8.15	rs2043599-G	rs2043599	0	2043599	Intergenic	1	NR	5E-7	6.30102999566398	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	4q32.3	4	167343098	SPOCK3	RNA5SP171 - PHBP14	100873436	100873751		      424.62	      305.33	rs13111850-G	rs13111850	0	13111850	Intergenic	1	NR	3E-11	10.52287874528034	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7q21.3	7	95971056	DYNC1I1	DYNC1I1			1780			rs13231718-C	rs13231718	0	13231718	intron	0	NR	5E-9	8.301029995663981	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7q33	7	135100989	LOC100129730	AGBL3			340351			rs17231212-G	rs17231212	0	17231212	intron	0	NR	2E-8	7.698970004336018	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	16p12.3	16	21101951	DNAH3	DNAH3			55567			rs16970881-A	rs16970881	0	16970881	intron	0	NR	1E-7	7	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	5q14.3	5	92222904	LOC100131236	PCBP2P3 - LDHBP3	100131236	100129283		      378.38	      617.93	rs10055544-A	rs10055544	0	10055544	Intergenic	1	NR	1E-7	7	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	1p32.2	1	57901564	DAB1	DAB1			1600			rs6679454-G	rs6679454	0	6679454	intron	0	NR	3E-7	6.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	6p22.3	6	23437448	LOC100131805	RPL6P18 - SPTLC1P2	100131805	100874498		      333.87	      419.12	rs7771911-A	rs7771911	0	7771911	Intergenic	1	NR	2E-12	11.69897000433602	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7q31.31	7	119966578	KCND2	GTF3AP6 - KCND2	100135063	3751		     1085.33	      307.06	rs17142462-A	rs17142462	0	17142462	Intergenic	1	NR	3E-9	8.522878745280337	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	11q23.1	11	112193708	BCO2	BCO2			83875			rs7105056-A	rs7105056	0	7105056	intron	0	NR	1E-8	8	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	4q31.23	4	147963038	ARHGAP10	ARHGAP10			79658			rs7658486-A	rs7658486	0	7658486	intron	0	NR	1E-8	8	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	5q31.2	5	138263645	GFRA3	GFRA3			2676			rs11242417-C	rs11242417	0	11242417	intron	0	NR	6E-8	7.221848749616355	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	5q23.1	5	120601996	PRR16	PRR16			51334			rs1584468-A	rs1584468	0	1584468	intron	0	NR	9E-8	7.045757490560674	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	11p12	11	38267043	LOC100132631	RPL7AP56 - RPL18P8	100271536	100129670		      540.55	      894.40	rs11034653-A	rs11034653	0	11034653	Intergenic	1	NR	2E-7	6.698970004336019	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7q21.3	7	94417954	COL1A2	COL1A2			1278			rs3736638-A	rs3736638	0	3736638	intron	0	NR	3E-7	6.522878745280337	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	17p12	17	15922707	ADORA2B	MEIS3P1 - ADORA2B	4213	136		      133.00	       22.21	rs859267-C	rs859267	0	859267	Intergenic	1	NR	3E-7	6.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7q11.23	7	73332645	FKBP6, TRIM50	FKBP6;LOC101930310			8468;101930310			rs6943090-A	rs6943090	0	6943090	intron;intron	0	NR	3E-7	6.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	22q13.33	22	49418853	FLJ44385	 - 						rs17000918-A	rs17000918	0	17000918	Intergenic	1	NR	4E-9	8.397940008672036	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	4q13.3	4	74295107	MTHFD2L	MTHFD2L			441024			rs16850864-A	rs16850864	0	16850864	intron	0	NR	7E-9	8.154901959985743	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	4q13.3	4	74304423	EPGN, MTHFD2L	MTHFD2L - EPGN	441024	255324		        1.32	        4.05	rs16850885-A	rs16850885	0	16850885	Intergenic	1	NR	7E-9	8.154901959985743	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7p15.2	7	27295942	LOC392008	RPL35P4 - EIF4HP1	100271006	401316		       26.19	      160.43	rs11564024-C	rs11564024	0	11564024	Intergenic	1	NR	3E-8	7.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	13q32.3	13	98733736	SLC15A1	SLC15A1			6564			rs9582259-C	rs9582259	0	9582259	intron	0	NR	3E-8	7.522878745280337	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7p21.3	7	7531789	COL28A1	COL28A1			340267			rs17168526-G	rs17168526	0	17168526	cds-synon	0	NR	6E-8	7.221848749616355	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3q22.1	3	133870480	RAB6B	RAB6B			51560			rs9835973-A	rs9835973	0	9835973	intron	0	NR	7E-8	7.154901959985742	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	10q22.1	10	69180045	SUPV3L1, VPS26A	SUPV3L1			6832			rs10998624-A	rs10998624	0	10998624	nearGene-5	0	NR	1E-9	8.999999999999998	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	4q31.3	4	154394970	DCHS2	DCHS2			54798			rs902464-A	rs902464	0	902464	intron	0	NR	3E-7	6.522878745280337	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3q26.2	3	169362397	MDS1	MECOM			2122			rs9883650-C	rs9883650	0	9883650	intron	0	NR	4E-7	6.397940008672037	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	10p14	10	9321914	LOC389936	LINC00709 - HSP90AB7P	100507163	644495		       34.86	      399.80	rs12247397-G	rs12247397	0	12247397	Intergenic	1	NR	3E-9	8.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	8q12.1	8	55255499	XKR4	XKR4			114786			rs12542677-A	rs12542677	0	12542677	intron	0	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	Xq21.33	23	98609356	LOC100128151	HMGB1P32 - XRCC6P5	100419995	442459		      186.61	      852.25	rs4827947-A	rs4827947	0	4827947	Intergenic	1	NR	3E-7	6.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	6q23.3	6	135679865	GAPDHL19	LINC00271			100131814			rs9389316-A	rs9389316	0	9389316	intron	0	NR	7E-13	12.15490195998574	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3p21.1	3	53113560	RFT1	RFT1			91869			rs13088281-A	rs13088281	0	13088281	intron	0	NR	3E-11	10.52287874528034	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	1q42.3	1	234956853	TOMM20	RNY4P16 - TOMM20	100431173	9804		      118.78	      152.49	rs908327-C	rs908327	0	908327	Intergenic	1	NR	5E-10	9.301029995663981	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3p21.1	3	52810518	ITIH3, ITIH4	ITIH3 - ITIH4	3699	3700		        1.51	        2.47	rs17331151-A	rs17331151	0	17331151	Intergenic	1	NR	2E-9	8.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	11q22.1	11	100302805	CNTN5	CNTN5			53942			rs11223581-G	rs11223581	0	11223581	intron	0	NR	9E-9	8.045757490560675	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	12p13.1	12	13719110	GRIN2B	GRIN2B			2904			rs2268118-A	rs2268118	0	2268118	intron	0	NR	1E-8	8	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	17q21.33	17	49488950	NGFR	EIF4EP2 - NGFR	100131693	4804		       64.02	        6.34	rs16948200-A	rs16948200	0	16948200	Intergenic	1	NR	2E-8	7.698970004336018	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	7q11.22	7	68585426	AUTS2	MTND4P3 - RNA5SP231	100873189	100873489		      318.56	      138.49	rs1403155-A	rs1403155	0	1403155	Intergenic	1	NR	2E-8	7.698970004336018	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2q23.2	2	149290764	LOC100129594	TXNP5 - FAM8A3P	151276	100129594		      221.84	       27.63	rs10432496-A	rs10432496	0	10432496	Intergenic	1	NR	6E-8	7.221848749616355	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	6q27	6	168110336	FRMD1	FRMD1 - CTAGE13P	79981	100421638		       28.78	      176.66	rs1473500-A	rs1473500	0	1473500	Intergenic	1	NR	3E-7	6.522878745280337	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3q25.2	3	152817576	P2RY1	ATP5LP5			100287091			rs10513432-G	rs10513432	0	10513432		0	NR	4E-7	6.397940008672037	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	13q33.2	13	106132916	LOC341604	LINC00344 - RNA5SP38	100874133	100873370		      401.20	       22.46	rs1372791-A	rs1372791	0	1372791	Intergenic	1	NR	4E-7	6.397940008672037	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	14q21.3	14	48994281	ATP5GP2	RPL18P1 - ATP5G2P2	326291	319119		      503.81	      379.63	rs11845208-G	rs11845208	0	11845208	Intergenic	1	NR	1E-7	7	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	11q12.2	11	61726855	DAGLA	DAGLA			747			rs4963243-A	rs4963243	0	4963243	intron	0	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	6q22.31	6	119544976	LOC728727	LOC101927959			101927959			rs1392089-A	rs1392089	0	1392089	intron	0	NR	4E-7	6.397940008672037	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	17q23.2	17	60889177	BCAS3	BCAS3			54828			rs7224438-G	rs7224438	0	7224438	intron	0	NR	4E-7	6.397940008672037	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3p21.1	3	52879263	TMEM110	TMEM110-MUSTN1			100526772			rs3796352-A	rs3796352	0	3796352	intron	0	NR	5E-7	6.30102999566398	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	12q12	12	43760023	IRAK4, PUS7L	IRAK4;PUS7L			51135;83448			rs4251424-A	rs4251424	0	4251424	intron;nearGene-5	0	NR	2E-8	7.698970004336018	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2p21	2	44435336	CAMKMT	CAMKMT			79823			rs13414205-A	rs13414205	0	13414205	intron	0	NR	7E-8	7.154901959985742	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	22q12.3	22	34493105	LOC441996	LARGE-AS1 - ISX	100506195	91464		      742.29	      573.03	rs738968-C	rs738968	0	738968	Intergenic	1	NR	8E-8	7.096910013008055	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2q36.3	2	227616703	C2orf83, LOC729968	C2orf83			56918			rs11889798-A	rs11889798	0	11889798	intron	0	NR	4E-7	6.397940008672037	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	2p13.1	2	74236439	SLC4A5	SLC4A5			57835			rs13006863-A	rs13006863	0	13006863	intron	0	NR	5E-7	6.30102999566398	(EA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NR	3p21.31	3	45775926	SLC6A20	SLC6A20			54716			rs758386-A	rs758386	0	758386	cds-synon	0	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	18q21.2	18	51186670	MEX3C	MEX3C			51320			rs8096445-A	rs8096445	0	8096445	intron	0	NR	9E-9	8.045757490560675	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	5q11.2	5	59264891	PDE4D	PDE4D			5144			rs17444059-G	rs17444059	0	17444059	intron	0	NR	2E-8	7.698970004336018	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	2p22.3	2	32896437	LTBP1	LINC00486			285045			rs6728021-G	rs6728021	0	6728021	intron	0	NR	4E-8	7.397940008672037	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	3q28	3	191804063	LOC100129725	PYDC2 - FGF12	152138	2257		      342.61	      335.18	rs1516489-C	rs1516489	0	1516489	Intergenic	1	NR	8E-8	7.096910013008055	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	9p21.1	9	32556382	NDUFB6, TOPORS	NDUFB6;TOPORS-AS1			4712;100129250			rs17290760-G	rs17290760	0	17290760	intron;intron	0	NR	1E-7	7	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	1p36.12	1	22047131	CDC42	LINC00339 - CDC42	29092	998		       15.91	        5.50	rs2501276-A	rs2501276	0	2501276	Intergenic	1	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	8p23.1	8	11552483	BLK	BLK			640			rs2255327-A	rs2255327	0	2255327	intron	0	NR	3E-7	6.522878745280337	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	5q34	5	167783467	ODZ2	TENM2			57451			rs2973662-A	rs2973662	0	2973662	intron	0	NR	5E-7	6.30102999566398	(AA)	NR	NR	Illumina [NR]	N
08/07/2012	22610502	Kennedy RB	05/19/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22610502	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	Nr	6q22.33	6	127700658	C6orf190	C6orf58 - THEMIS	352999	387357		      108.84	        7.54	rs17299841-C	rs17299841	0	17299841	Intergenic	1	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	19q13.32	19	44919689	APOE, TOMM40, APOC1	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	NR	8E-149	148.096910013008		   3.45	[NR] 	Illumina [2,543,888] (imputed)	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	2q14.3	2	127132061	BIN1	BIN1 - CYP27C1	274	339761		       24.73	       51.78	rs7561528-?	rs7561528	0	7561528	Intergenic	1	NR	6E-11	10.22184874961635		   1.25	[NR] 	Illumina [2,543,888] (imputed)	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	11q14.2	11	85966428	PICALM	PICALM			8301			rs17817600-?	rs17817600	0	17817600	intron	0	NR	2E-8	7.698970004336018		   1.33	[NR] 	Illumina [2,543,888] (imputed)	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	8p23.1	8	9141509	PPP1R3B	PPP1R3B			79660			rs3748140-?	rs3748140	0	3748140	missense	0	NR	3E-7	6.522878745280337		   2.43	[NR] 	Illumina [2,543,888] (imputed)	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	11q22.2	11	102862432	MMP3, MMP12	MMP12			4321			rs12808148-?	rs12808148	0	12808148	nearGene-3	0	NR	1E-6	5.999999999999999		   1.23	[NR] 	Illumina [2,543,888] (imputed)	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	4p15.1	4	30466544	Intergenic	RPS3AP17 - PCDH7	100271130	5099		      502.79	      253.79	rs6856768-?	rs6856768	0	6856768	Intergenic	1	NR	5E-6	5.301029995663981		   1.18	[NR] 	Illumina [2,543,888] (imputed)	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	5q12.1	5	61654384	FLJ37543	C5orf64			285668			rs11738335-?	rs11738335	0	11738335	intron	0	NR	5E-6	5.301029995663981		   1.20	[NR] 	Illumina [2,543,888] (imputed)	N
08/14/2012	22832961	Kamboh MI	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832961	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	2q12.3	2	107062032	Intergenic	PPP1R2P5 - RGPD4-AS1	649489	729121		      120.55	      761.03	rs1357692-?	rs1357692	0	1357692	Intergenic	1	NR	9E-6	5.045757490560675		   1.16	[NR] 	Illumina [2,543,888] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	19p12			APOE	 - 						APOE-E4	APOE					0.19	2E-33		(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	2p22.3	2	32640454	TTC27	TTC27			55622			rs1031261-C	rs1031261	0	1031261	intron	0	0.11	2E-6	5.698970004336018	(White matter hyperintensities)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	2q31.1	2	171271410	METTL8	TLK1 - METTL8	9874	79828		       40.10	       45.99	rs4667682-C	rs4667682	0	4667682	Intergenic	1	0.82	5E-6	5.301029995663981	(White matter hyperintensities)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	20q12	20	41435919	CHD6	CHD6			84181			rs13037749-A	rs13037749	0	13037749	intron	0	0.92	8E-6	5.096910013008055	(White matter hyperintensities)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	1p32.3	1	53115998	SLC1A7	SLC1A7			6512			rs3820201-A	rs3820201	0	3820201	intron	0	0.62	1E-6	5.999999999999999	(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	1q24.2	1	169581725	F5, SELP	F5			2153			rs6703865-A	rs6703865	0	6703865	intron	0	0.08	1E-9	8.999999999999998	(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	2p12	2	75699439	GCFC2	GCFC2			6936			rs2298948-C	rs2298948	0	2298948	intron	0	0.29	5E-8	7.30102999566398	(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	8q22.2	8	99822954	Intergenic	VPS13B			157680			rs959695-C	rs959695	0	959695	intron	0	0.18	1E-6	5.999999999999999	(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	9q21.32	9	81757826	TLE1	LOC101927502			101927502			rs11139399-C	rs11139399	0	11139399	intron	0	0.41	1E-6	5.999999999999999	(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	13q14.11	13	39543931	LHFP	LHFP			10186			rs9315702-A	rs9315702	0	9315702	intron	0	0.44	2E-8	7.698970004336018	(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	21q22.3	21	45427029	COL18A1	COL18A1;COL18A1-AS1			80781;378832			rs2838923-A	rs2838923	0	2838923	intron;nearGene-5	0	0.73	8E-7	6.096910013008056	(Hippocampal volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/31/2012	22745009	Melville SA	05/15/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22745009	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	19p12			APOE	 - 						APOE-E4	APOE					0.19	1E-7		(Total cerebral volume)	NR	NR	Illumina [2,131,250] (imputed)	N
07/11/2012	22584459	Sasayama D	05/15/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22584459	Possible association of CUX1 gene polymorphisms with antidepressant response in major depressive disorder.	Response to antidepressants	92 Japanese ancestry cases	136 Japanese ancestry cases	7q22.1	7	102166571	CUX1	CUX1			1523			rs365836-A	rs365836	0	365836	intron	0	NR	2E-6	5.698970004336018		   4.79	[2.38-9.64] 	Illumina [291,512]	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	2q32.3	2	195007095	SLC39A10	HNRNPA1P47 - AHCYP5	100287191	391470		      818.59	      575.70	rs10172965-T	rs10172965	0	10172965	Intergenic	1	0.139	6E-6	5.221848749616356	(Harm avoidance)	    .30	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	8q24.22	8	133059588	TG, SLA	SLA;TG			6503;7038			rs2741200-T	rs2741200	0	2741200	intron;intron	0	0.671	5E-6	5.301029995663981	(Harm avoidance)	    .32	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	15q13.1	15	28947614	APBA2	APBA2			321			rs17680945-A	rs17680945	0	17680945	intron	0	0.02	2E-6	5.698970004336018	(Harm avoidance)	    .92	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	1p31.1	1	81781563	LPHN2	LPHN2			23266			rs11163372-T	rs11163372	0	11163372	intron	0	0.188	3E-6	5.522878745280337	(Novelty seeking)	    .19	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	2p16.3	2	50504180	NRXN1	NRXN1			9378			rs6754640-A	rs6754640	0	6754640	intron	0	0.452	1E-6	5.999999999999999	(Novelty seeking)	    .15	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	4q28.3	4	137306455	PCDH18	SERF1AP1 - STMN1P2	100131921	100289663		        5.27	      118.97	rs987360-T	rs987360	0	987360	Intergenic	1	0.401	2E-6	5.698970004336018	(Novelty seeking)	    .27	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	8q22.1	8	93345870	FAM92A1	C8orf87 - LINC00535	389676	642924		      179.02	         .60	rs7387468-T	rs7387468	0	7387468	Intergenic	1	0.587	3E-6	5.522878745280337	(Novelty seeking)	    .22	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	10q26.3	10	131531763	TCERG1L	TCERG1L - LINC01164	256536	399827		      220.04	      240.64	rs11018023-A	rs11018023	0	11018023	Intergenic	1	0.175	7E-6	5.154901959985742	(Novelty seeking)	    .21	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	12q14.3	12	65448478	MSRB3	MSRB3			253827			rs1494508-A	rs1494508	0	1494508	intron	0	0.479	2E-6	5.698970004336018	(Novelty seeking)	    .20	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	3p12.1	3	85825326	CADM2	CADM2;CADM2-AS2			253559;100874037			rs12494658-T	rs12494658	0	12494658	intron;intron	0	0.752	5E-6	5.301029995663981	(Persistence)	    .08	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	5q23.3	5	128317330	FBN2	FBN2			2201			rs10057405-A	rs10057405	0	10057405	intron	0	0.891	9E-6	5.045757490560675	(Persistence)	    .11	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	9p23	9	10043014	PTPRD	PTPRD			5789			rs291272-T	rs291272	0	291272	intron	0	0.965	5E-6	5.301029995663981	(Persistence)	    .20	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	17p12	17	14007232	COX10	MIR548H3 - CDRT15P1	100302287	94158		      463.59	       17.27	rs17608059-T	rs17608059	0	17608059	Intergenic	1	0.491	3E-7	6.522878745280337	(Persistence)	    .09	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	8q23.3	8	112061867	CSMD3	EEF1A1P37 - CSMD3	100421825	114788		      835.68	      161.06	rs1996720-T	rs1996720	0	1996720	Intergenic	1	0.275	2E-6	5.698970004336018	(Reward dependence)	    .11	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	10q21.3	10	62896153	EGR2	EGR2 - NRBF2	1959	29982		        2.64	      237.09	rs10995356-A	rs10995356	0	10995356	Intergenic	1	0.39	3E-6	5.522878745280337	(Reward dependence)	    .11	 unit increase	Affymetrix & Illumina [1,252,222] (imputed)	N
08/14/2012	22832960	Service SK	05/15/2012	Transl Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22832960	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	21q22.11	21	32180200	C21orf45	LINC00159 - MIS18A	100551499	54069		       93.91	       88.02	rs2833693-T	rs2833693	0	2833693	Intergenic	1	0.723	4E-6	5.397940008672037	(Reward dependence)	    .17	 unit decrease	Affymetrix & Illumina [1,252,222] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q13.4	11	72721940	ARAP1	ARAP1			116985			rs11603334-?	rs11603334	0	11603334	intron	0	NR	2E-14	13.69897000433602		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	20p11.21	20	22578963	FOXA2	LINC00261			140828			rs6048205-?	rs6048205	0	6048205	nearGene-5	0	NR	2E-12	11.69897000433602		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.3	2	26930006	DPYSL5	DPYSL5			56896			rs1371614-?	rs1371614	0	1371614	intron	0	NR	2E-12	11.69897000433602		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	5q15	5	96207022	PCSK1	CTD-2337A12.1			101929710			rs13179048-?	rs13179048	0	13179048	intron	0	NR	2E-10	9.698970004336017		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	13q12.2	13	27917061	PDX1	PDX1-AS1			100861550			rs2293941-?	rs2293941	0	2293941	intron	0	NR	5E-10	9.301029995663981		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	8p23.1	8	9326086	PPP1R3B	LOC157273			157273			rs4841132-?	rs4841132	0	4841132	ncRNA	0	NR	8E-9	8.096910013008056		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	11	48311808	OR4S1	OR4S1 - OR4C3	256148	256144		        4.66	       13.13	rs1483121-?	rs1483121	0	1483121	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.2	2	27772914	MRPL33	MRPL33			9553			rs3736594-?	rs3736594	0	3736594	intron	0	NR	1E-15	15		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p15.4	11	8222251	LMO1	RIC3 - LMO1	79608	4004		       53.16	        2.05	rs11041816-?	rs11041816	0	11041816	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	6p24.3	6	7240344	RREB1	RREB1			6239			rs2714337-?	rs2714337	0	2714337	intron	0	NR	3E-7	6.522878745280337		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	14q32.11	14	89568628	FOXN3	FOXN3;LOC102723683			1112;102723683			rs8004664-?	rs8004664	0	8004664	intron;intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	12q24.31	12	121500382	FBXL10	KDM2B			84678			rs10849893-?	rs10849893	0	10849893	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p12.1	7	50683393	GRB10	GRB10			2887			rs10248619-?	rs10248619	0	10248619	intron	0	NR	8E-8	7.096910013008055		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	1q32.3	1	213985913	PROX1	PROX1-AS1			100505832			rs340874-?	rs340874	0	340874	intron	0	NR	4E-9	8.397940008672036		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-?	rs780094	0	780094	intron	0	NR	4E-24	23.39794000867204		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-?	rs560887	0	560887	intron	0	NR	2E-113	112.698970004336		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q21.1	3	123346931	ADCY5	ADCY5			111			rs11708067-?	rs11708067	0	11708067	intron	0	NR	3E-10	9.522878745280336		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q26.2	3	170999732	SLC2A2	SLC2A2			6514			rs11920090-?	rs11920090	0	11920090	intron	0	NR	8E-11	10.09691001300805		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-?	rs1470579	0	1470579	intron	0	NR	6E-7	6.221848749616355		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p21.2	7	15024684	DGKB	GTF3AP5 - AGMO	100128217	392636		       38.56	      175.63	rs2191349-?	rs2191349	0	2191349	Intergenic	1	NR	3E-21	20.52287874528034		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	7p13	7	44196069	GCK	GCK - YKT6	2645	10652		        6.65	        4.90	rs4607517-?	rs4607517	0	4607517	Intergenic	1	NR	8E-56	55.09691001300805		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	8q24.11	8	117173494	SLC30A8	SLC30A8			169026			rs11558471-?	rs11558471	0	11558471	UTR-3	0	NR	3E-20	19.52287874528034		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	9p24.2	9	4289050	GLIS3	GLIS3			169792			rs7034200-?	rs7034200	0	7034200	intron	0	NR	7E-7	6.154901959985743		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	9p21.3	9	22134095	CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      121.56	      312.75	rs10811661-?	rs10811661	0	10811661	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	10	111282335	ADRA2A	ADRA2A - BTBD7P2	150	100420392		      201.43	       40.44	rs10885122-?	rs10885122	0	10885122	Intergenic	1	NR	9E-8	7.045757490560674		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-?	rs7903146	0	7903146	intron	0	NR	2E-14	13.69897000433602		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	11	45851540	CRY2	CRY2			1408			rs11605924-?	rs11605924	0	11605924	intron	0	NR	4E-15	14.39794000867204		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	11	47314769	MADD	MADD			8567			rs7944584-?	rs7944584	0	7944584	intron	0	NR	4E-12	11.39794000867204		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q12.2	11	61804006	FADS1	FADS1			3992			rs174550-?	rs174550	0	174550	intron	0	NR	2E-9	8.698970004336019		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q14.3	11	92975544	MTNR1B	MTNR1B			4544			rs10830963-?	rs10830963	0	10830963	intron	0	NR	4E-105	104.397940008672		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting glucose-related traits (interaction with BMI)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	15q22.2	15	62104743	VPS13C	NPM1P47 - C2CD4B	100129972	388125		       21.44	       58.80	rs7173964-?	rs7173964	0	7173964	Intergenic	1	NR	6E-12	11.22184874961635		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	2q24.3	2	164694691	COBLL1, GRB14	COBLL1			22837			rs7607980-?	rs7607980	0	7607980	missense	0	NR	4E-20	19.39794000867203		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	2q36.3	2	226203364	IRS1	NYAP2 - MIR5702	57624	100847053		      549.35	      455.35	rs2943634-?	rs2943634	0	2943634	Intergenic	1	NR	2E-14	13.69897000433602		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	4q32.1	4	156798972	PDGFC	PDGFC			56034			rs4691380-?	rs4691380	0	4691380	intron	0	NR	5E-9	8.301029995663981		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	6p21.31	6	34877672	UHRF1BP1	TAF11;UHRF1BP1			6882;54887			rs4646949-?	rs4646949	0	4646949	nearGene-3;intron	0	NR	4E-8	7.397940008672037		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	1q41	1	219527177	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      326.48	       80.75	rs2785980-?	rs2785980	0	2785980	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	8p23.1	8	9326086	PPP1R3B	LOC157273			157273			rs4841132-?	rs4841132	0	4841132	ncRNA	0	NR	2E-10	9.698970004336017		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	19q13.11	19	33418804	PEPD	PEPD			5184			rs8182584-?	rs8182584	0	8182584	intron	0	NR	9E-8	7.045757490560674		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	13q31.1	13	80049211	SPRY2	LOC101927216			101927216			rs7981942-?	rs7981942	0	7981942	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	3p26.3	3	67310	CHL1	A1BG - CHL1		10752			      129.28	rs9841287-?	rs9841287	0	9841287	Intergenic	1	NR	7E-9	8.154901959985743		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	13q11	13	18737101	TUBA3C	ZNF965P - LINC00417	100132598	100874164		        2.67	        1.00	rs9552416-?	rs9552416	0	9552416	Intergenic	1	NR	3E-24	23.52287874528033		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10p12.1	10	27404376	PTCHD3	PTCHD3			374308			rs1334893-?	rs1334893	0	1334893	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	8q13.2	8	69581739	SULF1	SULF1			23213			rs13273088-?	rs13273088	0	13273088	intron	0	NR	7E-7	6.154901959985743		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	14q12	14	32738316	AKAP6	AKAP6			9472			rs2300835-?	rs2300835	0	2300835	intron	0	NR	5E-7	6.30102999566398		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	1p36.11	1	24258000	GRHL3	IFNLR1 - GRHL3	163702	57822		       70.73	       61.32	rs6670533-?	rs6670533	0	6670533	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10p14	10	6904790	SFMBT2	LINC00707 - SFMBT2	100507127	57713		       61.88	      253.83	rs2501677-?	rs2501677	0	2501677	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	3p25.2	3	12075120	SYN2	SYN2			6854			rs308971-?	rs308971	0	308971	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-?	rs780094	0	780094	intron	0	NR	3E-10	9.522878745280336		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	3p25.2	3	12351626	PPARG	PPARG			5468			rs1801282-?	rs1801282	0	1801282	missense	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-?	rs7903146	0	7903146	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
08/15/2012	22581228	Manning AK	05/13/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22581228	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting insulin-related traits (interaction with BMI)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	12q23.2	12	102518780	IGF1	IGF1 - LINC00485	3479	283432		       38.18	      290.50	rs35747-?	rs35747	0	35747	Intergenic	1	NR	1E-9	8.999999999999998		NR	NR	Affymetrix & Illumina [~2.4 million] (imputed)	N
07/10/2012	22589742	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589742	Genome-wide association of pericardial fat identifies a unique locus for ectopic fat.	Pericardial fat	5,487 European ancestry individuals	1,442 African American individuals, 1,399 Hispanic individuals, 761 Chinese ancestry individuals	2p24.3	2	12824371	TRIB2	MIR3125 - NACAP4	100422986	100421926		       86.93	      759.32	rs10198628-?	rs10198628	0	10198628	Intergenic	1	NR	5E-14	13.30102999566398		NR	NR	Affymetrix [~2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	13q14.2	13	46999481	HTR2A	HTR2A-AS1 - GNG5P5	100874082	100101935		      143.18	      307.64	rs12583882-G	rs12583882	0	12583882	Intergenic	1	0.34	6E-6	5.221848749616356	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	1p31.1	1	72358030	NEGR1	RPL31P12 - KRT8P21	100270887	126811		       56.16	      746.75	rs990871-T	rs990871	0	990871	Intergenic	1	0.61	4E-6	5.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	5q23.1	5	118002058	DTWD2	RPL7L1P4 - RNU7-34P	100130968	100147821		      222.47	      756.15	rs13166814-A	rs13166814	0	13166814	Intergenic	1	0.16	5E-7	6.30102999566398	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	2q22.1	2	136733551	THSD7B	UBBP1 - THSD7B	7315	80731		      403.55	      148.60	rs1582861-T	rs1582861	0	1582861	Intergenic	1	0.50	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	15q26.1	15	92588402	LOC400451	LINC00930 - FAM174B	100144604	400451		       16.14	       29.05	rs2173063-A	rs2173063	0	2173063	Intergenic	1	0.06	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	20q13.2	20	52021121	ZFP64	RNU7-6P - ZFP64	100147749	55734		      116.09	       62.89	rs6013355-A	rs6013355	0	6013355	Intergenic	1	0.84	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	3q25.1	3	149259527	CP	CPHL1P			389160			rs7617219-A	rs7617219	0	7617219		0	0.60	1E-6	5.999999999999999	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	16q12.2	16	53797859	FTO	FTO			79068			rs9922619-T	rs9922619	0	9922619	intron	0	0.44	6E-8	7.221848749616355	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	14q23.2	14	62710426	KCNH5	KCNH5			27133			rs869834-T	rs869834	0	869834	intron	0	0.59	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	3p13	3	71251416	FOXP1	FOXP1			27086			rs17008402-G	rs17008402	0	17008402	intron	0	0.31	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	3p12.1	3	86109735	CADM2	PRKRIRP2 - VGLL3	100422711	389136		       94.42	      828.24	rs2324999-T	rs2324999	0	2324999	Intergenic	1	0.20	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	6q22.31	6	124835303	TCBA1	NKAIN2 - STL	154215	7955		        9.66	       72.94	rs11154271-C	rs11154271	0	11154271	Intergenic	1	0.22	1E-6	5.999999999999999	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	2q32.2	2	189813819	PMS1	PMS1			5378			rs5743030-A	rs5743030	0	5743030	intron	0	0.05	5E-6	5.301029995663981	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	8p21.2	8	23961174	STC1	STC1 - ADAM28	6781	10863		      106.37	      332.87	rs7833268-C	rs7833268	0	7833268	Intergenic	1	0.13	6E-7	6.221848749616355	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	14q12	14	25010336	STXBP6	STXBP6			29091			rs11850957-T	rs11850957	0	11850957	intron	0	0.21	6E-6	5.221848749616356	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	19q13.32	19	45692498	QPCTL, FBXO46, EML2, SNRPD2, GIPR	SNRPD2;QPCTL			6633;54814			rs7245708-C	rs7245708	0	7245708	nearGene-5;UTR-5	0	0.04	1E-6	5.999999999999999	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	15q22.2	15	60768508	RORA	RORA			6095			rs12591650-A	rs12591650	0	12591650	intron	0	0.85	7E-7	6.154901959985743	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	4q31.23	4	148390576	NR3C2	NR3C2			4306			rs11725509-A	rs11725509	0	11725509	intron	0	0.97	1E-6	5.999999999999999	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	2q24.2	2	160925262	TANK	MIR4785 - TANK	100616364	10010		      517.38	      211.67	rs1722636-T	rs1722636	0	1722636	Intergenic	1	0.23	6E-7	6.221848749616355	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	3p12.1	3	86109735	CADM2	PRKRIRP2 - VGLL3	100422711	389136		       94.42	      828.24	rs2324999-T	rs2324999	0	2324999	Intergenic	1	0.20	4E-6	5.397940008672037	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	1q31.2	1	193765770	CDC73	RPL23AP22 - EEF1A1P14	100271291	647167		        8.50	      423.13	rs2025934-G	rs2025934	0	2025934	Intergenic	1	0.93	3E-6	5.522878745280337	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	2q33.3	2	207012741	CPO	CPO - KLF7	130749	8609		       43.27	       61.40	rs1453160-A	rs1453160	0	1453160	Intergenic	1	0.13	4E-6	5.397940008672037	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	1q42.12	1	226668188	ITPKB	ITPKB;ITPKB-IT1			3707;100506443			rs10916025-G	rs10916025	0	10916025	intron;intron	0	0.80	6E-6	5.221848749616356	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	5q23.2	5	124235467	ZNF608	HMGB1P29 - ZNF608	100873892	57507		       14.39	      401.45	rs17501712-T	rs17501712	0	17501712	Intergenic	1	0.14	7E-7	6.154901959985743	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	19q13.32	19	45692498	QPTCL, FBXO46, EML2, SNRPD2, GIPR	SNRPD2;QPCTL			6633;54814			rs7245708-C	rs7245708	0	7245708	nearGene-5;UTR-5	0	0.04	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	3q24	3	146914377	PLSCR5	PLSCR5 - RPL21P71	389158	729962		      308.16	      362.35	rs12629805-C	rs12629805	0	12629805	Intergenic	1	0.10	3E-6	5.522878745280337	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	16q12.2	16	53723828	FTO	FTO			79068			rs1421084-A	rs1421084	0	1421084	intron	0	0.97	3E-6	5.522878745280337	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	10q26.13	10	124587345	LHPP	LHPP			64077			rs12773846-G	rs12773846	0	12773846	intron	0	0.70	7E-6	5.154901959985742	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	5q35.2	5	174268775	HMP19	HMP19 - GAPDHP71	51617	2613		      159.60	      244.46	rs11952171-A	rs11952171	0	11952171	Intergenic	1	0.18	7E-6	5.154901959985742	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	7q11.23	7	72841239	POM121	SBDSP1 - SPDYE7P	155370	441251		        3.84	       21.52	rs2058059-C	rs2058059	0	2058059	Intergenic	1	0.24	7E-6	5.154901959985742	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	18q23	18	78831635	SALL3	LINC01029 - SALL3	101927715	27164		      837.91	      148.64	rs12967884-A	rs12967884	0	12967884	Intergenic	1	0.89	7E-6	5.154901959985742	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	2q21.3	2	134385716	MGAT5	MGAT5			4249			rs12467609-T	rs12467609	0	12467609	intron	0	0.64	7E-6	5.154901959985742	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	5q14.3	5	91685570	ARRDC3	RAB5CP2 - PCBP2P3	133789	100131236		      208.55	      158.12	rs13153333-G	rs13153333	0	13153333	Intergenic	1	0.04	8E-6	5.096910013008055	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	13q21.1	13	58554392	PCDH17	CTAGE16P - DNAJA1P1	341689	100129308		       23.25	      196.52	rs4886088-A	rs4886088	0	4886088	Intergenic	1	0.80	8E-6	5.096910013008055	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	6q15	6	88473861	RNGTT	ACTBP8 - RNGTT	68	8732		      196.79	      136.04	rs11757661-A	rs11757661	0	11757661	Intergenic	1	0.04	8E-6	5.096910013008055	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	1q22	1	156386688	CCT3, C1orf182, C1orf61, RHBG	RHBG - C1orf61	57127	10485		        1.47	       17.57	rs6686886-G	rs6686886	0	6686886	Intergenic	1	0.14	9E-6	5.045757490560675	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	16p13.3	16	5535851	FAM86A	RBFOX1			54715			rs870288-A	rs870288	0	870288	intron	0	0.70	9E-6	5.045757490560675	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	15q22.31	15	66774225	SMAD6	SMAD6			4091			rs11858577-T	rs11858577	0	11858577	intron	0	0.08	9E-6	5.045757490560675	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry females and 4,997 European ancestry males	NA	2p24.2	2	17427972	RAD51AP2	PSMC1P10 - RAD51AP2	388925	729475		       41.36	       82.61	rs12185578-A	rs12185578	0	12185578	Intergenic	1	0.23	9E-6	5.045757490560675	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	16p13.3	16	6649260	A2BP1	RBFOX1			54715			rs11643447-T	rs11643447	0	11643447	intron	0	0.05	2E-7	6.698970004336019	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	7p21.3	7	7262662	C1GALT1	LOC101927354			101927354			rs1299548-A	rs1299548	0	1299548	intron	0	0.46	4E-6	5.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	1p36.22	1	11676543	MAD2L2	MAD2L2			10459			rs2336030-C	rs2336030	0	2336030	intron	0	0.65	1E-6	5.999999999999999	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	18q11.2	18	26312708	TAF4B	TAF4B			6875			rs1791780-G	rs1791780	0	1791780	intron	0	0.54	4E-7	6.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	19q13.11	19	33223022	SLC7A10	SLC7A10			56301			rs8106493-T	rs8106493	0	8106493	intron	0	0.20	1E-6	5.999999999999999	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	1q22	1	156371703	RHBG	RHBG			57127			rs7525133-A	rs7525133	0	7525133	intron	0	0.09	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	6q27	6	165052862	C6orf118	QKI - C6orf118	9444	168090		     1474.27	      211.74	rs227458-C	rs227458	0	227458	Intergenic	1	0.87	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	1q41	1	217544790	GPATCH2	GPATCH2			55105			rs2059397-G	rs2059397	0	2059397	intron	0	0.03	6E-6	5.221848749616356	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	3q22.2	3	135516516	EPHB1	EPHB1 - PPP2R3A	2047	5523		      256.05	      449.16	rs1502172-A	rs1502172	0	1502172	Intergenic	1	0.34	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	8q11.1	8	47036078	KIAA0146	MAPK6PS4 - RPL10AP2	286065	253986		       60.68	      121.01	rs2287654-T	rs2287654	0	2287654	Intergenic	1	0.88	4E-6	5.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	11q23.3	11	116958937	KIAA0999	SIK3			23387			rs7120173-G	rs7120173	0	7120173	intron	0	0.22	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	2p24.3	2	14661377	FAM84A	FAM84A - NBAS	151354	51594		       21.33	      505.53	rs7602441-G	rs7602441	0	7602441	Intergenic	1	0.88	7E-6	5.154901959985742	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	1p36.32	1	3732998	TP73	TP73			7161			rs9662633-A	rs9662633	0	9662633	cds-synon	0	0.05	6E-6	5.221848749616356	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	6p24.3	6	7106083	RREB1	RREB1			6239			rs2842895-C	rs2842895	0	2842895	nearGene-5	0	0.58	4E-6	5.397940008672037	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	3p22.3	3	34170674	PDCD6IP	LOC101928114			101928114			rs6781182-T	rs6781182	0	6781182	intron	0	0.29	3E-6	5.522878745280337	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	4q31.23	4	149980605	DCLK2	ATP5LP4 - DCLK2	100130396	166614		     1276.77	       97.67	rs11930273-G	rs11930273	0	11930273	Intergenic	1	0.91	1E-6	5.999999999999999	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	3q23	3	139887952	CLSTN2	NMNAT3 - CLSTN2	349565	64084		      209.91	       47.23	rs2554152-G	rs2554152	0	2554152	Intergenic	1	0.89	7E-6	5.154901959985742	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	6p24.3	6	7106083	RREB1	RREB1			6239			rs2842895-C	rs2842895	0	2842895	nearGene-5	0	0.58	4E-6	5.397940008672037	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.23	12	117732104	KSR2	KSR2			283455			rs4304868-A	rs4304868	0	4304868	intron	0	0.16	8E-6	5.096910013008055	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	16q24.1	16	84240799	ADAD2, TAF1C, KCNG4, WFDC1	KCNG4			93107			rs746080-T	rs746080	0	746080	nearGene-5	0	0.31	6E-6	5.221848749616356	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.31	12	123915003	DNAH10	DNAH10			196385			rs1316952-T	rs1316952	0	1316952	intron	0	0.87	5E-6	5.301029995663981	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	13q14.2	13	47862790	SUCLA2	RPL27AP8 - SUCLA2	100271605	8803		       95.69	       79.87	rs11620399-T	rs11620399	0	11620399	Intergenic	1	0.04	5E-6	5.301029995663981	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	1p13.2	1	111894722	KCND3	KCND3			3752			rs2798334-C	rs2798334	0	2798334	intron	0	0.73	1E-6	5.999999999999999	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	15q22.2	15	59532788	FAM81A	RPL21P114 - RPL21P117	100271441	729241		        6.86	       19.78	rs17302400-T	rs17302400	0	17302400	Intergenic	1	0.13	7E-6	5.154901959985742	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	22q12.3	22	33170601	LARGE	TIMP3 - LARGE	7078	9215		      307.56	      101.92	rs4821132-C	rs4821132	0	4821132	Intergenic	1	0.56	6E-6	5.221848749616356	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	7q33	7	135803873	UNQ194	FAM180A - LUZP6	389558	767558		       55.01	      122.88	rs6946494-A	rs6946494	0	6946494	Intergenic	1	0.83	8E-6	5.096910013008055	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	17q24.3	17	72830265	SLC39A11	SLC39A11			201266			rs12943829-C	rs12943829	0	12943829	intron	0	0.01	2E-6	5.698970004336018	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	16p13.12	16	12547258	LOC92017	SNX29			92017			rs1641895-T	rs1641895	0	1641895	intron	0	0.02	5E-7	6.30102999566398	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	2p25.2	2	6554387	LOC129607	LINC01247 - MIR7515	101929390	102466235		      178.97	       95.99	rs10495537-T	rs10495537	0	10495537	Intergenic	1	0.32	5E-7	6.30102999566398	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.13	12	113053979	DTX1, OAS2, RASAL1	LOC100506734			100506734			rs7956193-T	rs7956193	0	7956193	intron	0	0.29	1E-6	5.999999999999999	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	9q33.1	9	115440437	Intergenic	DEC1 - LINC00474	50514	58483		       37.79	      447.83	rs9409154-C	rs9409154	0	9409154	Intergenic	1	0.12	2E-6	5.698970004336018	(Women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	6p21.33	6	31409810	HLA-B, HCP5	MICA			100507436			rs12175489-A	rs12175489	0	12175489	intron	0	0.15	2E-6	5.698970004336018	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	3p26.1	3	6439938	GRM7	MRPS35P1 - MRPS36P1	339910	347705		      992.84	      333.10	rs17216035-A	rs17216035	0	17216035	Intergenic	1	0.28	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	1p34.3	1	34523636	GJB5	C1orf94 - MIR552	84970	693137		      304.51	      145.96	rs10914967-A	rs10914967	0	10914967	Intergenic	1	0.25	6E-6	5.221848749616356	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	9p22.3	9	14562316	ZDHHC21	TRNAH5 - CDCA4P1	100009607	100420502		      128.31	       31.26	rs10961577-C	rs10961577	0	10961577	Intergenic	1	0.96	7E-6	5.154901959985742	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	20p13	20	3775950	HSPA12B	C20orf27 - SPEF1	54976	25876		        7.56	        1.55	rs13043330-C	rs13043330	0	13043330	Intergenic	1	0.63	7E-6	5.154901959985742	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	13q12.12	13	23722723	TNFRSF19, MIPEP	TNFRSF19 - MIPEP	55504	4285		       46.62	        7.47	rs7324557-G	rs7324557	0	7324557	Intergenic	1	0.65	8E-6	5.096910013008055	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	1q23.3	1	161302651	LOC642502, PCP4L1, MPZ, SDHC	PCP4L1 - MPZ	654790	4359		       17.20	        2.08	rs4657015-G	rs4657015	0	4657015	Intergenic	1	0.58	8E-6	5.096910013008055	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	3p14.1	3	64744216	ADAMTS9	ADAMTS9-AS2			100507098			rs7638389-A	rs7638389	0	7638389	intron	0	0.74	8E-6	5.096910013008055	(Women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	4q26	4	117158751	TRAM1L1	TRAM1L1 - RPSAP35	133022	100270916		       73.17	      254.71	rs10516635-A	rs10516635	0	10516635	Intergenic	1	0.11	8E-6	5.096910013008055	(Overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.31	12	124014995	ZNF664	ZNF664;ZNF664-FAM101A			144348;100533183			rs1048497-G	rs1048497	0	1048497	UTR-3;intron	0	0.83	9E-6	5.045757490560675	(Overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	9q21.32	9	81598245	TLE1	TLE1			7088			rs2777777-C	rs2777777	0	2777777	intron	0	0.55	9E-6	5.045757490560675	(Women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	3q27.3	3	188045610	LPP	BCL6 - LPP-AS2	604	339929		      299.89	      105.60	rs6789987-C	rs6789987	0	6789987	Intergenic	1	0.71	9E-6	5.045757490560675	(Women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	5q35.3	5	179272310	ADAMTS2	ADAMTS2			9509			rs901254-C	rs901254	0	901254	intron	0	0.96	9E-6	5.045757490560675	(Men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry females and 4,997 European ancestry males	NA	5q31.3	5	140992637	PCDHAC1	PCDHA9;PCDHAC2;PCDHAC1;PCDHA13;PCDHA12;PCDHA11;PCDHA10;PCDHA8;PCDHA7;PCDHA6;PCDHA5;PCDHA4;PCDHA3;PCDHA2;PCDHA1			9752;56134;56135;56136;56137;56138;56139;56140;56141;56142;56143;56144;56145;56146;56147			rs31872-G	rs31872	0	31872	intron;intron;intron;intron;intron;intron;intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.39	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3p22.1	3	42051930	TRAK1	TRAK1			22906			rs1498095-T	rs1498095	0	1498095	intron	0	0.91	8E-6	5.096910013008055	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	9q31.2	9	105678261	TAL2, FCMD, TMEM38B	TAL2 - TMEM38B	6887	55151		       15.15	       16.26	rs10120372-C	rs10120372	0	10120372	Intergenic	1	0.06	4E-6	5.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3q22.2	3	135506407	EPHB1	EPHB1 - PPP2R3A	2047	5523		      245.94	      459.27	rs11712655-T	rs11712655	0	11712655	Intergenic	1	0.72	1E-6	5.999999999999999	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3q26.1	3	162413620	LOC131149	OTOL1 - TOMM22P6	131149	100287573		      909.67	       72.90	rs12636148-C	rs12636148	0	12636148	Intergenic	1	0.11	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	2q36.3	2	226228869	IRS1	NYAP2 - MIR5702	57624	100847053		      574.85	      429.84	rs2943640-C	rs2943640	0	2943640	Intergenic	1	0.63	4E-6	5.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	1p36.32	1	3734467	KIAA0495, LRRC47, TP73, CCDC27	TP73			7161			rs12562437-T	rs12562437	0	12562437	UTR-3	0	0.04	2E-6	5.698970004336018	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	15q15.1	15	40904186	CHAC1, RHOV, DLL4, SPINT1, VPS18	VPS18			57617			rs8036080-A	rs8036080	0	8036080	nearGene-3	0	0.01	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	20q13.12	20	46869084	EYA2	RPL13P14 - EYA2	100130374	2139		        4.99	       25.54	rs6124878-A	rs6124878	0	6124878	Intergenic	1	0.06	4E-6	5.397940008672037	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3p14.1	3	64741410	ADAMTS9	ADAMTS9-AS2			100507098			rs7433808-A	rs7433808	0	7433808	intron	0	0.74	2E-7	6.698970004336019	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	4q35.1	4	185691521	SORBS2	SORBS2			8470			rs4376189-A	rs4376189	0	4376189	intron	0	0.90	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	1q41	1	219483821	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      283.12	      124.11	rs11118316-A	rs11118316	0	11118316	Intergenic	1	0.44	3E-9	8.522878745280337	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	6q27	6	166157955	T	T			6862			rs1056053-T	rs1056053	0	1056053	UTR-3	0	0.59	4E-6	5.397940008672037	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	7p15.2	7	26442184	SNX10	SNX10 - KIAA0087	29887	9808		       67.80	       90.94	rs10951138-A	rs10951138	0	10951138	Intergenic	1	0.18	3E-6	5.522878745280337	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	6q15	6	89988555	BACH2	BACH2			60468			rs12204127-T	rs12204127	0	12204127	intron	0	0.20	6E-7	6.221848749616355	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	1p13.3	1	110102705	UBL4B, FAM40A, SLC6A17, ALX3	ALX3 - UBL4B	257	164153		       32.01	        9.74	rs17025426-C	rs17025426	0	17025426	Intergenic	1	0.94	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.31	12	123915003	DNAH10	DNAH10			196385			rs1316952-T	rs1316952	0	1316952	intron	0	0.87	9E-7	6.045757490560675	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	8q24.22	8	134581482	ZFAT1	ZFAT			57623			rs6577655-T	rs6577655	0	6577655	intron	0	0.33	5E-6	5.301029995663981	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	1p34.3	1	38136401	POU3F1	MIR3659 - TUBB6P1	100500801	100418964		       47.07	      247.45	rs7547921-A	rs7547921	0	7547921	Intergenic	1	0.09	8E-6	5.096910013008055	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	17p12	17	14726429	FLJ45831	RPS18P12 - RPL23AP76	388339	441781		       20.85	      221.31	rs9899891-A	rs9899891	0	9899891	Intergenic	1	0.74	4E-6	5.397940008672037	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	22q12.3	22	33165760	LARGE	TIMP3 - LARGE	7078	9215		      302.72	      106.76	rs743793-T	rs743793	0	743793	Intergenic	1	0.54	6E-7	6.221848749616355	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	14q21.3	14	49067707	RPS29	RPL18P1 - ATP5G2P2	326291	319119		      577.24	      306.21	rs8013477-C	rs8013477	0	8013477	Intergenic	1	0.24	4E-6	5.397940008672037	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.31	12	123915003	DNAH10	DNAH10			196385			rs1316952-T	rs1316952	0	1316952	intron	0	0.87	1E-7	7	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3q27.3	3	188045610	LPP	BCL6 - LPP-AS2	604	339929		      299.89	      105.60	rs6789987-C	rs6789987	0	6789987	Intergenic	1	0.71	3E-6	5.522878745280337	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	13q14.2	13	47862790	SUCLA2	RPL27AP8 - SUCLA2	100271605	8803		       95.69	       79.87	rs11620399-T	rs11620399	0	11620399	Intergenic	1	0.04	5E-6	5.301029995663981	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	1q41	1	219477791	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      277.09	      130.14	rs12022722-T	rs12022722	0	12022722	Intergenic	1	0.47	2E-6	5.698970004336018	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	5q33.1	5	150446307	RPS14	RPS14			6208			rs13177918-T	rs13177918	0	13177918	intron	0	0.20	8E-6	5.096910013008055	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3p14.1	3	64741410	ADAMTS9	ADAMTS9-AS2			100507098			rs7433808-A	rs7433808	0	7433808	intron	0	0.74	2E-7	6.698970004336019	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	11q25	11	132959967	OPCML	OPCML			4978			rs1567127-G	rs1567127	0	1567127	intron	0	0.20	1E-6	5.999999999999999	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	12q12	12	42766942	PRICKLE1	RPS27P21 - MRPS36P5	100131905	347703		       87.78	      287.14	rs12316797-G	rs12316797	0	12316797	Intergenic	1	0.13	1E-6	5.999999999999999	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	8q12.1	8	59266162	TOX	TOX - RNA5SP267	9760	100873520		      146.95	      189.72	rs10089517-C	rs10089517	0	10089517	Intergenic	1	0.71	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	5q23.2	5	123439091	CCDC100	KRT8P33 - HMGB3P17	100418737	100419948		       36.67	       29.71	rs7705033-G	rs7705033	0	7705033	Intergenic	1	0.72	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	9q22.31	9	92797223	BICD2, ZNF484	BICD2 - ANKRD19P	23299	138649		       32.42	       12.39	rs10992471-G	rs10992471	0	10992471	Intergenic	1	0.57	2E-6	5.698970004336018	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	10q26.3	10	133492654	CYP2E1	OR7M1P - CYP2E1	81352	1571		       10.88	       34.71	rs1536827-C	rs1536827	0	1536827	Intergenic	1	0.07	4E-6	5.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	19q13.11	19	33223022	SLC7A10	SLC7A10			56301			rs8106493-T	rs8106493	0	8106493	intron	0	0.20	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	9p21.2	9	26208859	TUSC1	FAM71BP1 - CAAP1	100421478	79886		      270.42	      631.83	rs4978053-C	rs4978053	0	4978053	Intergenic	1	0.06	6E-6	5.221848749616356	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.31	12	124014995	ZNF664	ZNF664;ZNF664-FAM101A			144348;100533183			rs1048497-G	rs1048497	0	1048497	UTR-3;intron	0	0.83	7E-6	5.154901959985742	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	11p14.3	11	24230982	LUZP2	RPS2P38 - LUZP2	196188	338645		      709.74	      265.99	rs16912285-G	rs16912285	0	16912285	Intergenic	1	0.10	7E-6	5.154901959985742	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3q12.1	3	100237712	TBC1D23, C3orf26	VTI1BP1 - TBC1D23	391559	55773		       11.64	       23.11	rs12486865-G	rs12486865	0	12486865	Intergenic	1	0.72	7E-6	5.154901959985742	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	11q22.3	11	106625312	GUCY1A2	AASDHPPT - GUCY1A2	60496	2977		      526.62	       48.70	rs1791581-A	rs1791581	0	1791581	Intergenic	1	0.17	8E-6	5.096910013008055	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	9q21.13	9	74534921	RORB	RORB			6096			rs7042950-A	rs7042950	0	7042950	intron	0	0.80	9E-6	5.045757490560675	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	7q35	7	147529799	CNTNAP2	CNTNAP2			26047			rs6464816-A	rs6464816	0	6464816	intron	0	0.15	9E-6	5.045757490560675	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry females and 4,997 European ancestry males	NA	3p26.3	3	1303741	CNTN6	CNTN6			27255			rs9861887-T	rs9861887	0	9861887	intron	0	0.76	9E-6	5.045757490560675	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	1p36.32	1	3734845	KIAA0495,LRRC47,TP73,CCDC27	TP73			7161			rs10910018-A	rs10910018	0	10910018	UTR-3	0	0.04	2E-6	5.698970004336018	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	5p15.1	5	15285305	FBXL7	SEPHS2P1 - MARK2P5	100420190	100421485		      323.12	       98.93	rs745978-C	rs745978	0	745978	Intergenic	1	0	7E-6	5.154901959985742	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	5p14.1	5	26139029	CDH9	MSNP1 - CDH9	4479	1007		      225.75	      741.57	rs4701523-T	rs4701523	0	4701523	Intergenic	1	0.06	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	5q35.1	5	171293729	RANBP17	RANBP17			64901			rs2278255-G	rs2278255	0	2278255	intron	0	0.06	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	14q21.3	14	49484632	RPS29	ATP5G2P2 - RNA5SP384	319119	100873639		      110.10	       68.00	rs1530947-T	rs1530947	0	1530947	Intergenic	1	0.80	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	2q35	2	216689490	IGFBP5	IGFBP5			3488			rs2241193-C	rs2241193	0	2241193	intron	0	0.89	1E-7	7	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	5p15.31	5	6599109	NSUN2,SRD5A1	NSUN2			54888			rs6876835-A	rs6876835	0	6876835	nearGene-3	0	0.58	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	12q24.21	12	114199618	TBX5	GLULP5 - TBX5	100421694	6910		       93.70	      154.31	rs7294372-T	rs7294372	0	7294372	Intergenic	1	0.93	3E-6	5.522878745280337	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	11p15.3	11	12049118	DKK3	DKK3 - MICAL2	27122	9645		       39.29	       61.46	rs16910421-A	rs16910421	0	16910421	Intergenic	1	0.03	4E-6	5.397940008672037	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	1p31.1	1	74833098	TYW3	TYW3 - LHX8	127253	431707		       66.42	      295.34	rs11161851-T	rs11161851	0	11161851	Intergenic	1	0.57	7E-6	5.154901959985742	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	8p21.3	8	22762038	PEBP4	PEBP4			157310			rs11998649-A	rs11998649	0	11998649	intron	0	0.19	7E-6	5.154901959985742	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	22q12.3	22	33350540	LARGE	LARGE			9215			rs2267193-C	rs2267193	0	2267193	intron	0	0.28	8E-6	5.096910013008055	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	2p25.2	2	6556956	LOC129607	LINC01247 - MIR7515	101929390	102466235		      181.53	       93.42	rs962528-T	rs962528	0	962528	Intergenic	1	0.32	8E-6	5.096910013008055	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	2p14	2	64800490	SERTAD2	RPS10P9 - RPL11P1	730187	100133170		      134.37	      159.52	rs11683197-T	rs11683197	0	11683197	Intergenic	1	0.72	5E-6	5.301029995663981	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	5p15.2	5	13242862	DNAH5	LINC01194 - RPS23P5	404663	100271093		      437.68	        7.37	rs10066447-T	rs10066447	0	10066447	Intergenic	1	0.23	7E-6	5.154901959985742	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	6p21.32	6	32357594	C6orf10	C6orf10			10665			rs13196329-C	rs13196329	0	13196329	intron	0	0.02	3E-6	5.522878745280337	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	2p11.2	2	88360069	THNSL2	THNSL2 - MRPL45P1	55258	359747		      173.43	        4.62	rs1659258-A	rs1659258	0	1659258	Intergenic	1	0.92	2E-8	7.698970004336018	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	3q26.1	3	167631050	WDR49	WDR49			151790			rs7627289-A	rs7627289	0	7627289	intron	0	0.22	2E-6	5.698970004336018	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	11q12.3	11	63003916	SLC22A8	SLC22A8			9376			rs11231299-A	rs11231299	0	11231299	intron	0	0.20	5E-6	5.301029995663981	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	8q21.13	8	81532989	LOC646486, FABP4	FABP12			646486			rs16909318-C	rs16909318	0	16909318	intron	0	0.88	7E-7	6.154901959985743	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	14q31.1	14	81128036	TSHR	TSHR;LOC101928431			7253;101928431			rs3783938-T	rs3783938	0	3783938	intron;intron	0	0.07	8E-7	6.096910013008056	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	1p36.32	1	3734845	KIAA0495, LRRC47, TP73, CCDC27	TP73			7161			rs10910018-A	rs10910018	0	10910018	UTR-3	0	0.04	2E-6	5.698970004336018	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	5q14.3	5	83664915	HAPLN1	HAPLN1			1404			rs3846635-G	rs3846635	0	3846635	intron	0	0.08	2E-6	5.698970004336018	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	3p12.1	3	85453695	CADM2	CADM2			253559			rs13323436-A	rs13323436	0	13323436	intron	0	0.10	3E-6	5.522878745280337	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	9q21.32	9	81607703	TLE1	TLE1			7088			rs815847-G	rs815847	0	815847	intron	0	0.36	3E-6	5.522878745280337	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	13q31.3	13	93286453	GPC6	GPC6			10082			rs11839514-G	rs11839514	0	11839514	intron	0	0.34	4E-6	5.397940008672037	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	9q21.2	9	78325660	PSAT1	PSAT1			29968			rs1411916-A	rs1411916	0	1411916	intron	0	0.11	4E-6	5.397940008672037	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	5p15.31	5	7816532	ADCY2	ADCY2			108			rs326155-G	rs326155	0	326155	intron	0	0.01	4E-6	5.397940008672037	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	21q21.2	21	23417236	NCAM2	TUBAP - VN2R20P	54016	100033408		        8.01	      492.89	rs3819055-G	rs3819055	0	3819055	Intergenic	1	0.27	5E-6	5.301029995663981	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	12p12.3	12	16253756	MGST1	SLC15A5			729025			rs10772915-G	rs10772915	0	10772915	intron	0	0.57	5E-6	5.301029995663981	(overall)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	10q26.2	10	126011367	ADAM12, FANK1	FANK1-AS1 - ADAM12	101410540	8038		       38.09	        1.02	rs10901513-T	rs10901513	0	10901513	Intergenic	1	0.60	6E-6	5.221848749616356	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	21q21.3	21	29341277	BACH1	BACH1			571			rs17744121-G	rs17744121	0	17744121	intron	0	0.07	6E-6	5.221848749616356	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	10q26.12	10	121179860	BRWD2	LINC01153			101927889			rs7085142-T	rs7085142	0	7085142	intron	0	0.37	6E-6	5.221848749616356	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	2q31.1	2	170509379	MYO3B	MYO3B			140469			rs10176755-G	rs10176755	0	10176755	intron	0	0	7E-6	5.154901959985742	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	17q21.33	17	50513848	MYCBPAP	MYCBPAP			84073			rs6504663-A	rs6504663	0	6504663	intron	0	0.76	9E-6	5.045757490560675	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	13q33.2	13	105936792	DAOA	LINC00344 - RNA5SP38	100874133	100873370		      205.08	      218.58	rs7336109-T	rs7336109	0	7336109	Intergenic	1	0.29	9E-6	5.045757490560675	(women)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	16q12.2	16	55221279	IRX6	IRX5 - IRX6	10265	79190		      286.79	      103.22	rs2001970-T	rs2001970	0	2001970	Intergenic	1	0.51	9E-6	5.045757490560675	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	4q22.3	4	94693127	PDLIM5	PDLIM5 - BMPR1B	10611	658		       24.90	       64.85	rs17022027-C	rs17022027	0	17022027	Intergenic	1	0.94	9E-6	5.045757490560675	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	6q23.2	6	133546664	EYA4	LOC100507308			100507308			rs9375969-G	rs9375969	0	9375969	intron	0	0.76	9E-6	5.045757490560675	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/17/2012	22589738	Fox CS	05/10/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22589738	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry females and 4,997 European ancestry males	NA	11p11.2	11	45792030	CRY2, SLC35C1	DKFZp779M0652 - SLC35C1	374387	55343		       19.67	       12.04	rs12285276-G	rs12285276	0	12285276	Intergenic	1	0.76	9E-6	5.045757490560675	(men)	NR	NR	Affymetrix & Illumina [2.5 million] (imputed)	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	11q12.3	11	63406212	SLC22A9	SLC22A9			114571			rs7101446-T	rs7101446	0	7101446	intron	0	NR	3E-6	5.522878745280337	(Economic policy)	    .15	[0.084-0.206] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	3p12.3	3	74578552	Intergenic	CNTN3			5067			rs13073838-T	rs13073838	0	13073838	intron	0	NR	3E-6	5.522878745280337	(Economic policy)	    .12	[0.067-0.165] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	17p13.3	17	928427	NXN	NXN			64359			rs2360111-T	rs2360111	0	2360111	intron	0	NR	3E-6	5.522878745280337	(Economic policy)	    .11	[0.066-0.16] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	12p12.3	12	16456104	Intergenic	SUPT16HP1 - GOT2P4	400011	121520		       53.60	       57.24	rs10772939-T	rs10772939	0	10772939	Intergenic	1	NR	5E-6	5.301029995663981	(Economic policy)	    .11	[0.065-0.159] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	3q13.2	3	112962738	CD200R1	CD200R1			131450			rs1488193-G	rs1488193	0	1488193	intron	0	NR	6E-6	5.221848749616356	(Economic policy)	    .23	[0.13-0.33] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	1p36.23	1	8278295	Intergenic	RPL7AP18 - SLC45A1	390993	50651		      219.81	       39.82	rs438895-G	rs438895	0	438895	Intergenic	1	NR	7E-6	5.154901959985742	(Education)	    .38	[0.22-0.55] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	1q31.1	1	188410297	Intergenic	SLC4A1APP2 - RPS3AP9	100422527	100271129		      701.82	      284.00	rs12125250-C	rs12125250	0	12125250	Intergenic	1	NR	4E-6	5.397940008672037	(Foreign Policy)	    .12	[0.071-0.177] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	13q13.3	13	36196880	SOHLH2	SOHLH2;CCDC169-SOHLH2			54937;100526761			rs7327064-T	rs7327064	0	7327064	intron;intron	0	NR	6E-6	5.221848749616356	(Foreign Policy)	    .14	[0.079-0.201] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	7q32.3	7	132144369	PLXNA4	PLXNA4			91584			rs1399090-T	rs1399090	0	1399090	intron	0	NR	7E-6	5.154901959985742	(Foreign Policy)	    .22	[0.12-0.31] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	6q22.1	6	117522909	DCBLD1	DCBLD1			285761			rs210648-G	rs210648	0	210648	intron	0	NR	2E-6	5.698970004336018	(Risk)	    .12	[0.073-0.171] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	17q21.31	17	45135596	ACBD4	ACBD4			79777			rs2291447-T	rs2291447	0	2291447	intron	0	NR	2E-6	5.698970004336018	(Risk)	    .11	[0.067-0.161] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	4p16.1	4	9789088	Intergenic	SLC2A9			56606			rs1850744-T	rs1850744	0	1850744	intron	0	NR	4E-6	5.397940008672037	(Risk)	    .31	[0.18-0.43] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	2p16.1	2	54854239	Intergenic	EML6			400954			rs12713280-T	rs12713280	0	12713280	intron	0	NR	6E-6	5.221848749616356	(Risk)	    .12	[0.070-0.176] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	17p12	17	12901233	RICH2	ARHGAP44			9912			rs7209847-G	rs7209847	0	7209847	intron	0	NR	9E-6	5.045757490560675	(Risk)	    .27	[0.15-0.39] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	8p22	8	17943260	PCM1	PCM1			5108			rs2299587-T	rs2299587	0	2299587	intron	0	NR	9E-7	6.045757490560675	(Trust)	    .13	[0.074-0.176] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	1q32.1	1	206859406	Intergenic	IL19 - IL20	29949	50604		       16.43	        5.95	rs574773-T	rs574773	0	574773	Intergenic	1	NR	2E-6	5.698970004336018	(Trust)	    .20	[0.12-0.28] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	5q14.1	5	78691701	Intergenic	HMGB1P21 - ARSB	100419947	411		       46.86	       85.51	rs784420-G	rs784420	0	784420	Intergenic	1	NR	8E-6	5.096910013008055	(Trust)	    .12	[0.067-0.173] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103640374	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      116.26	      422.52	rs10937540-T	rs10937540	0	10937540	Intergenic	1	NR	4E-7	6.397940008672037		    .09	[0.056-0.126] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103662008	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      137.89	      400.89	rs6775909-T	rs6775909	0	6775909	Intergenic	1	NR	6E-7	6.221848749616355		    .09	[0.055-0.125] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103626595	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      102.48	      436.30	rs9821642-G	rs9821642	0	9821642	Intergenic	1	NR	7E-7	6.154901959985743		    .09	[0.055-0.129] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103612639	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		       88.52	      450.26	rs9820695-G	rs9820695	0	9820695	Intergenic	1	NR	9E-7	6.045757490560675		    .09	[0.054-0.128] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103573382	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		       49.27	      489.51	rs4856162-G	rs4856162	0	4856162	Intergenic	1	NR	1E-6	5.999999999999999		    .09	[0.054-0.128] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103526248	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		        2.13	      536.65	rs1397924-T	rs1397924	0	1397924	Intergenic	1	NR	1E-6	5.999999999999999		    .09	[0.055-0.129] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103681238	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      157.12	      381.66	rs7628767-G	rs7628767	0	7628767	Intergenic	1	NR	1E-6	5.999999999999999		    .09	[0.052-0.122] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103720030	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      195.91	      342.86	rs4493441-G	rs4493441	0	4493441	Intergenic	1	NR	1E-6	5.999999999999999		    .09	[0.052-0.122] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	14q24.2	14	71965432	RGS6	RGS6			9628			rs4902960-G	rs4902960	0	4902960	intron	0	NR	1E-6	5.999999999999999		    .19	[0.11-0.27] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103588798	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		       64.68	      474.10	rs7612581-T	rs7612581	0	7612581	Intergenic	1	NR	2E-6	5.698970004336018		    .09	[0.053-0.123] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103684670	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      160.55	      378.22	rs10511217-T	rs10511217	0	10511217	Intergenic	1	NR	2E-6	5.698970004336018		    .09	[0.055-0.129] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103678925	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      154.81	      383.97	rs12485744-T	rs12485744	0	12485744	Intergenic	1	NR	2E-6	5.698970004336018		    .09	[0.054-0.128] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	3	103644217	Intergenic	MIR548AB - RAP1BP2	100616336	100128179		      120.10	      418.68	rs10937544-C	rs10937544	0	10937544	Intergenic	1	NR	6E-6	5.221848749616356		    .09	[0.051-0.125] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3p14.2	3	62492519	CADPS	CADPS			8618			rs13325751-T	rs13325751	0	13325751	intron	0	NR	6E-6	5.221848749616356		    .13	[0.075-0.189] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	14q12	14	32381819	AKAP6	AKAP6			9472			rs1951681-G	rs1951681	0	1951681	intron	0	NR	6E-6	5.221848749616356		    .19	[0.11-0.28] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	6p21.33	6	31899476	EHMT2	C2;EHMT2;ZBTB12			717;10919;221527			rs9267663-T	rs9267663	0	9267663	intron;nearGene-5;nearGene-3	0	NR	6E-6	5.221848749616356		    .29	[0.16-0.42] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	10p15.2	10	3375932	Intergenic	PITRM1-AS1 - KLF6	100507034	1316		      227.30	      400.06	rs1570854-T	rs1570854	0	1570854	Intergenic	1	NR	7E-6	5.154901959985742		    .08	[0.044-0.114] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	2p12	2	76148585	Intergenic	SUCLA2P2 - LRRTM4	100129863	80059		       41.39	      599.14	rs10204325-T	rs10204325	0	10204325	Intergenic	1	NR	1E-7	7		    .13	[0.085-0.183] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	2p12	2	76013235	Intergenic	GCFC2 - SUCLA2P2	6936	100129863		      301.88	       92.77	rs436000-T	rs436000	0	436000	Intergenic	1	NR	8E-7	6.096910013008056		    .13	[0.076-0.174] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	13q31.1	13	86116392	Intergenic	MOB1AP1 - DDX6P2	100873874	100130117		      146.86	      159.10	rs7984869-T	rs7984869	0	7984869	Intergenic	1	NR	3E-6	5.522878745280337		    .12	[0.066-0.164] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	14q22.1	14	53370767	Intergenic	DDHD1 - RPS3AP46	80821	100271596		      217.44	      242.03	rs12434047-G	rs12434047	0	12434047	Intergenic	1	NR	3E-6	5.522878745280337		    .13	[0.074-0.180] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	11q13.1	11	64816759	Intergenic	MEN1 - CDC42BPG	4221	55561		        5.47	        7.43	rs470763-G	rs470763	0	470763	Intergenic	1	NR	5E-6	5.301029995663981		    .11	[0.064-0.162] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	9q33.1	9	117375479	ASTN2	ASTN2			23245			rs2226006-T	rs2226006	0	2226006	intron	0	NR	6E-6	5.221848749616356		    .11	[0.062-0.160] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	22q13.32	22	48057774	Intergenic	LINC00898 - MIR3201	400932	100422916		      426.21	      216.59	rs117294-C	rs117294	0	117294	Intergenic	1	NR	7E-6	5.154901959985742		    .11	[0.061-0.159] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	11q14.1	11	83012030	RAB30	RAB30			27314			rs11233413-T	rs11233413	0	11233413	intron	0	NR	4E-7	6.397940008672037		    .11	[0.067-0.149] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	10q23.31	10	90203706	Intergenic	SNRPD2P1 - HTR7	119358	3363		      224.54	      537.11	rs2250149-T	rs2250149	0	2250149	Intergenic	1	NR	1E-6	5.999999999999999		    .11	[0.069-0.159] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	10q23.31	10	90202913	Intergenic	SNRPD2P1 - HTR7	119358	3363		      223.75	      537.91	rs2250245-G	rs2250245	0	2250245	Intergenic	1	NR	2E-6	5.698970004336018		    .11	[0.067-0.157] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	1p31.3	1	65813442	PDE4B	PDE4B			5142			rs4384209-G	rs4384209	0	4384209	intron	0	NR	2E-6	5.698970004336018		    .13	[0.073-0.179] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	12p12.1	12	23486983	Intergenic	RPS27P22 - SOX5	100131418	6660		      764.51	       45.31	rs2120771-G	rs2120771	0	2120771	Intergenic	1	NR	3E-6	5.522878745280337		    .11	[0.062-0.152] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	22q13.31	22	44615881	Intergenic	LINC00229			414351			rs4823246-G	rs4823246	0	4823246	intron	0	NR	3E-6	5.522878745280337		    .10	[0.059-0.141] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3p25.3	3	10733074	Intergenic	MIR885 - LINC00606	100126334	285370		      338.51	       26.41	rs1682825-T	rs1682825	0	1682825	Intergenic	1	NR	4E-6	5.397940008672037		    .12	[0.067-0.169] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	5p15.1	5	15581896	FBXL7	FBXL7			23194			rs1978633-T	rs1978633	0	1978633	intron	0	NR	5E-6	5.301029995663981		    .09	[0.051-0.129] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3q24	3	144059866	Intergenic	C3orf58 - RNA5SP144	205428	100873411		       67.50	      127.04	rs16854884-C	rs16854884	0	16854884	Intergenic	1	NR	7E-6	5.154901959985742		    .10	[0.058-0.148] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	1q43	1	238561441	Intergenic	KRT18P32 - MIPEPP2	391179	100130099		       68.74	      215.68	rs10754644-G	rs10754644	0	10754644	Intergenic	1	NR	7E-6	5.154901959985742		    .09	[0.051-0.129] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3q24	3	144053405	Intergenic	C3orf58 - RNA5SP144	205428	100873411		       61.04	      133.50	rs13068298-T	rs13068298	0	13068298	Intergenic	1	NR	8E-6	5.096910013008055		    .10	[0.057-0.147] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3q13.33	3	120324989	LRRC58	LRRC58			116064			rs10511400-T	rs10511400	0	10511400	UTR-3	0	NR	8E-6	5.096910013008055		    .16	[0.088-0.226] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	6q16.3	6	100509468	ASCC3	ASCC3			10973			rs240768-T	rs240768	0	240768	missense	0	NR	2E-6	5.698970004336018		    .27	[0.16-0.38] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	18	42522676	Intergenic	LINC00907			284260			rs1346987-C	rs1346987	0	1346987	intron	0	NR	2E-6	5.698970004336018		    .18	[0.11-0.25] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	18	42495991	Intergenic	LINC00907			284260			rs8090196-T	rs8090196	0	8090196	intron	0	NR	3E-6	5.522878745280337		    .18	[0.1-0.25] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	18	42478917	Intergenic	LINC00907			284260			rs7235528-T	rs7235528	0	7235528	intron	0	NR	4E-6	5.397940008672037		    .17	[0.096-0.238] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	6q16.3	6	100947531	Intergenic	LOC102724422			102724422			rs11969893-G	rs11969893	0	11969893	intron	0	NR	4E-6	5.397940008672037		    .32	[0.19-0.46] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	2q13	2	110949828	ACOXL	ACOXL			55289			rs3789119-T	rs3789119	0	3789119	intron	0	NR	4E-6	5.397940008672037		    .14	[0.079-0.193] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	18	42443817	Intergenic	LINC00907			284260			rs12606301-G	rs12606301	0	12606301	intron	0	NR	5E-6	5.301029995663981		    .17	[0.098-0.244] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	21q22.2	21	41099701	Intergenic	YRDCP3 - LINC00323	100861429	284835		      235.23	       41.80	rs16998084-G	rs16998084	0	16998084	Intergenic	1	NR	5E-6	5.301029995663981		    .40	[0.23-0.57] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	18	42525692	Intergenic	LINC00907			284260			rs7231412-T	rs7231412	0	7231412	intron	0	NR	6E-6	5.221848749616356		    .17	[0.097-0.243] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	10p15.1	10	4967567	AKR1C1	AKR1C1			1645			rs2904804-T	rs2904804	0	2904804	intron	0	NR	6E-6	5.221848749616356		    .12	[0.066-0.168] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	5p14.3	5	23243916	Intergenic	GCNT1P2 - PRDM9	100421560	56979		      662.84	      263.70	rs17376026-T	rs17376026	0	17376026	Intergenic	1	NR	6E-6	5.221848749616356		    .12	[0.068-0.174] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	14q23.2	14	62265946	Intergenic	LINC00644 - ATP5A1P4	101954204	100129782		      125.97	      338.17	rs10146615-T	rs10146615	0	10146615	Intergenic	1	NR	7E-6	5.154901959985742		    .14	[0.077-0.199] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	6q27	6	165715150	Intergenic	PDE10A - LINC00473	10846	90632		       53.05	      208.90	rs9364813-G	rs9364813	0	9364813	Intergenic	1	NR	8E-6	5.096910013008055		    .27	[0.15-0.38] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	2p16.3	2	52476452	Intergenic	ZNF863P - MIR4431	100419682	100616431		      399.01	      226.07	rs12619788-G	rs12619788	0	12619788	Intergenic	1	NR	8E-6	5.096910013008055		    .11	[0.063-0.161] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	9q33.3	9	126068818	Intergenic	PBX3 - MVB12B	5090	89853		      101.44	      258.03	rs4838320-T	rs4838320	0	4838320	Intergenic	1	NR	9E-6	5.045757490560675		    .20	[0.11-0.28] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	18q22.3	18	72774833	NETO1	NETO1			81832			rs41418949-T	rs41418949	0	41418949	intron	0	NR	6E-7	6.221848749616355		    .36	[0.22-0.50] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	18p11.31	18	3522008	DLGAP1	DLGAP1			9229			rs8083633-T	rs8083633	0	8083633	intron	0	NR	1E-6	5.999999999999999		    .15	[0.091-0.217] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	4q24	4	105530154	Intergenic	EEF1A1P9 - ATP5EP1	441032	23744		       43.78	        2.23	rs12499086-G	rs12499086	0	12499086	Intergenic	1	NR	2E-6	5.698970004336018		    .13	[0.076-0.182] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	4q24	4	105542556	Intergenic	ATP5EP1 - ARHGEF38	23744	54848		        9.75	       10.00	rs11730243-T	rs11730243	0	11730243	Intergenic	1	NR	2E-6	5.698970004336018		    .13	[0.076-0.182] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	10q23.31	10	90873142	RPP30	RPP30			10556			rs4586057-T	rs4586057	0	4586057	intron	0	NR	5E-6	5.301029995663981		    .14	[0.080-0.202] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	12q21.1	12	71677265	THAP2	THAP2			83591			rs10748180-G	rs10748180	0	10748180	UTR-3	0	NR	5E-6	5.301029995663981		    .12	[0.070-0.176] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	17p13.1	17	6703699	SLC13A5	SLC13A5			284111			rs218676-G	rs218676	0	218676	intron	0	NR	5E-6	5.301029995663981		    .15	[0.084-0.214] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	22q13.31	22	44572650	LOC388910	LINC00207			388910			rs138597-G	rs138597	0	138597	nearGene-3	0	NR	7E-6	5.154901959985742		    .12	[0.070-0.176] unit increase	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	12q21.1	12	71731505	Intergenic	TMEM19 - RAB21	55266	23011		       27.45	       23.37	rs11178918-G	rs11178918	0	11178918	Intergenic	1	NR	8E-6	5.096910013008055		    .18	[0.1-0.26] unit decrease	Illumina [628,922]	N
08/14/2012	22566634	Benjamin DJ	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566634	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	1p22.3	1	84824726	EDG7	LPAR3			23566			rs9728717-T	rs9728717	0	9728717	intron	0	NR	9E-6	5.045757490560675		    .14	[0.079-0.201] unit increase	Illumina [628,922]	N
07/27/2012	22566624	Castano Betancourt MC	05/07/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22566624	Genome-wide association and functional studies identify the DOT1L gene to be involved in cartilage thickness and hip osteoarthritis.	Osteoarthritis	6,523 European ancestry individuals	4,442 European ancestry individuals	19p13.3	19	2177194	DOT1L	DOT1L			84444			rs12982744-G	rs12982744	0	12982744	intron	0	0.39	1E-11	11		    .09	[NR] mm increase	Illumina [2,455,290] (imputed)	N
08/09/2012	22566560	Malhotra AK	05/07/2012	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22566560	Association between common variants near the melanocortin 4 receptor gene and severe antipsychotic drug-induced weight gain.	Antipsychotic drug-induced weight gain	77 European ancestry individuals, 32 African American individuals, 30 Other ancestry individuals 	183 European ancestry individuals, 22 African American individuals	18q21.32	18	60215554	MC4R	RPS3AP49 - MC4R	400652	4160		       65.15	      155.78	rs489693-?	rs489693	0	489693	Intergenic	1	0.34	6E-12	11.22184874961635		NR	NR	Illumina [803,582]	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	12p13.33	12	110822	IQSEC3	IQSEC3			440073			rs2011738-G	rs2011738	0	2011738	intron	0	NR	6E-6	5.221848749616356	(EA)	   1.34	[0.71-1.97] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	10p15.3	10	1032842	C10orf110	IDI2-AS1			55853			rs12762955-C	rs12762955	0	12762955	intron	0	NR	8E-6	5.096910013008055	(EA)	   1.17	[0.62-1.72] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	17q12	17	37538240	SYNRG	SYNRG			11276			rs2074409-T	rs2074409	0	2074409	intron	0	NR	2E-6	5.698970004336018	(EA)	   1.20	[0.67-1.73] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	11q21	11	94538497	FUT4	C11orf97 - FUT4	643037	2526		        6.37	        5.35	rs11020821-C	rs11020821	0	11020821	Intergenic	1	NR	9E-7	6.045757490560675	(EA)	   1.40	[0.79-2.01] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	6q23.2	6	133342451	EYA4	EYA4			2070			rs11753937-T	rs11753937	0	11753937	intron	0	NR	6E-6	5.221848749616356	(EA)	   1.12	[0.61-1.63] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	3q24	3	143785691	SLC9A9	SLC9A9			285195			rs2166775-G	rs2166775	0	2166775	intron	0	NR	3E-6	5.522878745280337	(EA)	    .99	[0.54-1.44] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	1q24.2	1	170664755	PRRX1	PRRX1			5396			rs659580-T	rs659580	0	659580	intron	0	NR	1E-6	5.999999999999999	(EA)	   1.28	[0.71-1.85] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	4p16.1	4	6056770	JAKMIP1	JAKMIP1			152789			rs16838131-A	rs16838131	0	16838131	intron	0	NR	2E-6	5.698970004336018	(AA)	   2.26	[1.01-3.51] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	16p12.3	16	19017227	TMC7	TMC7			79905			rs4265793-T	rs4265793	0	4265793	intron	0	NR	6E-6	5.221848749616356	(AA)	   1.22	[0.65-1.79] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	10p12.1	10	26445658	APBB1IP	APBB1IP			54518			rs2992257-T	rs2992257	0	2992257	intron	0	NR	3E-7	6.522878745280337	(AA)	   8.63	[-2.13040-19.39040] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	5p13.3	5	30899410	CTD-2127O16.1	HPRTP2 - RPL19P11	3254	100270950		      649.93	      154.11	rs6871087-G	rs6871087	0	6871087	Intergenic	1	NR	1E-6	5.999999999999999	(AA)	   1.40	[0.79-2.01] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	5p13.2	5	34951045	DNAJC21	DNAJC21			134218			rs37439-A	rs37439	0	37439	intron	0	NR	9E-6	5.045757490560675	(AA)	   1.00	[0.53-1.47] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	7q11.22	7	71551174	WBSCR17	WBSCR17			64409			rs4719147-T	rs4719147	0	4719147	intron	0	NR	2E-6	5.698970004336018	(AA)	   1.13	[0.64-1.62] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	11q14.3	11	91223046	MIR1261	OSBPL9P3 - RPL7AP57	100420591	100271537		      106.49	      938.04	rs4491175-T	rs4491175	0	4491175	Intergenic	1	NR	8E-6	5.096910013008055	(AA)	   1.10	[0.59-1.61] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	4q24	4	100885375	EMCN	LINC01216 - PPP3CA	100874275	5530		      210.26	      138.06	rs13107740-G	rs13107740	0	13107740	Intergenic	1	NR	5E-6	5.301029995663981	(AA)	   1.51	[0.78-2.24] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	3q21.1	3	122670146	EIF4BP8	EIF4BP8 - PARP14	339881	54625		        8.23	       10.66	rs790123-T	rs790123	0	790123	Intergenic	1	NR	6E-6	5.221848749616356	(AA)	   1.07	[0.58-1.56] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	3q21.3	3	127242305	AC112482.3	C3orf56 - TPRA1	285311	131601		       44.12	      330.76	rs13075436-C	rs13075436	0	13075436	Intergenic	1	NR	6E-6	5.221848749616356	(AA)	   1.30	[0.71-1.89] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	3q26.31	3	171936113	TMEM212	TMEM212 - FNDC3B	389177	64778		       76.80	      103.52	rs3913363-T	rs3913363	0	3913363	Intergenic	1	NR	4E-7	6.397940008672037	(AA)	   1.30	[0.75-1.85] unit increase	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	2q37.2	2	234692420	AC010148.1	ARL4C - HSPA8P10	10123	100420004		      195.37	       52.29	rs4663476-G	rs4663476	0	4663476	Intergenic	1	NR	8E-6	5.096910013008055	(AA)	   1.23	[0.66-1.80] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	6p21.33	6	30827394	C6orf214	LINC00243			401247			rs7772131-?	rs7772131	0	7772131	intron	0	NR	3E-6	5.522878745280337	(AA)	   6.73	[0.89-12.57] unit decrease	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	11q21	11	94398973	GPR83	GPR83			10888			rs3758785-G	rs3758785	0	3758785	intron	0	NR	2E-6	5.698970004336018	(EA)	NR	NR	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	2p22.1	2	39616057	AC007246.3	LOC728730			728730			rs7587205-T	rs7587205	0	7587205		0	NR	4E-6	5.397940008672037	(AA)	NR	NR	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	15q26.1	15	93095172	RGMA	LOC101927025			101927025			rs7168353-C	rs7168353	0	7168353	intron	0	NR	1E-6	5.999999999999999	(AA)	NR	NR	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	3q21.1	3	122662076	EIF4BP8	EIF4BP8 - PARP14	339881	54625		         .16	       18.73	rs790116-G	rs790116	0	790116	Intergenic	1	NR	2E-7	6.698970004336019	(AA)	NR	NR	Affymetrix [~2.3 million] (imputed)	N
07/21/2012	22566498	Turner ST	05/07/2012	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/22566498	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NR	11q21	11	94538497	FUT4	C11orf97 - FUT4	643037	2526		        6.37	        5.35	rs11020821-C	rs11020821	0	11020821	Intergenic	1	NR	4E-6	5.397940008672037	(EA)	NR	NR	Affymetrix [~2.3 million] (imputed)	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	2q24.2	2	162254026	IFIH1	FAP - IFIH1	2191	64135		       10.49	       13.05	rs2111485-G	rs2111485	0	2111485	Intergenic	1	0.62	5E-15	14.30102999566398		   1.30	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	3q13.33	3	119569567	CD80	CSRP2P - ADPRH	1467	141		       37.96	       10.11	rs59374417-C	rs59374417	0	59374417	Intergenic	1	0.13	4E-10	9.397940008672037		   1.34	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	4p16.1	4	10725229	CLNK	CLNK - RNPS1P1	116449	643446		       40.47	      643.59	rs16872571-C	rs16872571	0	16872571	Intergenic	1	0.56	2E-8	7.698970004336018		   1.21	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	6q15	6	90247744	BACH2	BACH2			60468			rs3757247-A	rs3757247	0	3757247	intron	0	0.47	3E-8	7.522878745280337		   1.20	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	8q24.22	8	132917672	SLA	TG			7038			rs853308-G	rs853308	0	853308	intron	0	0.48	2E-8	7.698970004336018		   1.20	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	10q25.3	10	113721259	CASP7	CASP7			840			rs3814231-G	rs3814231	0	3814231	intron	0	0.75	4E-8	7.397940008672037		   1.23	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	11p13	11	35259305	CD44	SLC1A2			6506			rs10768122-G	rs10768122	0	10768122	UTR-3	0	0.41	2E-9	8.698970004336019		   1.22	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	11q21	11	95578258	TYR	SESN3 - FGFR3P2	143686	100462815		      345.72	      178.70	rs4409785-C	rs4409785	0	4409785	Intergenic	1	0.19	2E-13	12.69897000433602		   1.34	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	12q13.2	12	56023144	IKZF4	IKZF4			64375			rs2456973-C	rs2456973	0	2456973	intron	0	0.35	3E-14	13.52287874528034		   1.29	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	12q24.12	12	111466567	SH2B3	ATXN2			6311			rs4766578-T	rs4766578	0	4766578	intron	0	0.52	4E-18	17.39794000867204		   1.32	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	15q13.1	15	28111713	OCA2, HERC2	HERC2			8924			rs1129038-C	rs1129038	0	1129038	UTR-3	0	0.27	4E-8	7.397940008672037		   1.22	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	16q24.3	16	89751681	MC1R	FANCA			2175			rs9926296-A	rs9926296	0	9926296	intron	0	0.54	2E-13	12.69897000433602		   1.27	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	19p13.3	19	4830616	TICAM1	TICAM1			148022			rs6510827-T	rs6510827	0	6510827	intron	0	0.41	9E-8	7.045757490560674		   1.19	[NR] 	Illumina [495,821]	N
07/11/2012	22561518	Jin Y	05/06/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22561518	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls        	1,377 European ancestry cases, 1,284 European ancestry controls	22q13.2	22	41361643	TOB2	ZC3H7B - TEF	23264	7008		        1.50	        5.69	rs4822024-G	rs4822024	0	4822024	Intergenic	1	0.79	7E-10	9.154901959985741		   1.28	[NR] 	Illumina [495,821]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	15q26.2	15	95598638	NR2F2	LINC00924 - NR2F2-AS1	145820	644192		       90.79	      667.75	rs10520789-?	rs10520789	0	10520789	Intergenic	1	NR	6E-7	6.221848749616355	(Change in DAS28)	NR	NR	Illumina [486,450]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	17q24.3	17	69806211	MAP2K6	LOC101928122			101928122			rs11870477-?	rs11870477	0	11870477	intron	0	NR	3E-6	5.522878745280337	(Change in DAS28)	NR	NR	Illumina [486,450]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	1p36.12	1	21549423	ALPL	ALPL			249			rs885814-?	rs885814	0	885814	intron	0	NR	6E-6	5.221848749616356	(Change in DAS28)	NR	NR	Illumina [486,450]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	18q22.3	18	71581359	CBLN2	GTSCR1 - CBLN2	220158	147381		      930.50	      955.32	rs1539909-?	rs1539909	0	1539909	Intergenic	1	NR	4E-6	5.397940008672037	(Relative change in DAS28)	NR	NR	Illumina [486,450]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	2p22.2	2	37504522	QPCT	QPCT - CDC42EP3	25797	10602		      131.20	      137.36	rs960902-?	rs960902	0	960902	Intergenic	1	NR	8E-6	5.096910013008055	(Relative change in DAS28)	NR	NR	Illumina [486,450]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	16q23.1	16	76856229	CNTNAP4	CNTNAP4 - MIR4719	85445	100616172		      296.99	       12.71	rs17679567-?	rs17679567	0	17679567	Intergenic	1	NR	9E-6	5.045757490560675	(Relative change in DAS28)	NR	NR	Illumina [486,450]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	12p12.2	12	20687905	PDE3A	PDE3A			5139			rs11045392-?	rs11045392	0	11045392	nearGene-3	0	NR	2E-6	5.698970004336018	(EULAR response)	   3.30	[1.90-5.60] 	Illumina [486,450]	N
07/10/2012	22569225	Krintel SB	05/06/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22569225	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NR	12p12.2	12	20707159	SLCO1C1	SLCO1C1			53919			rs3794271-?	rs3794271	0	3794271	intron	0	NR	4E-6	5.397940008672037	(EULAR response)	   3.20	[1.90-5.50] 	Illumina [486,450]	N
07/09/2012	22561531	Wan YI	05/05/2012	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/22561531	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	2q12.1	2	102354740	IL18R1,IL1R1	IL18R1			8809			rs9807989-?	rs9807989	0	9807989	nearGene-5	0	NR	6E-8	7.221848749616355		   1.33	[1.20-1.47] 	Illumina [6,103,628] (Imputed)	N
07/09/2012	22561531	Wan YI	05/05/2012	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/22561531	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	5q31.1	5	132461230	C5orf56	C5orf56			441108			rs11745587-?	rs11745587	0	11745587	intron	0	NR	2E-6	5.698970004336018		   1.26	[1.15-1.39] 	Illumina [6,103,628] (Imputed)	N
07/09/2012	22561531	Wan YI	05/05/2012	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/22561531	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	NR			Intergenic	 - 						chr2:211694960-?	ch2:211694960					NR	7E-6			   1.59	[1.30-1.94] 	Illumina [6,103,628] (Imputed)	N
07/09/2012	22561531	Wan YI	05/05/2012	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/22561531	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	5q31.3	5	142066415	NDFIP1	MRPL11P2 - NDFIP1	134008	80762		       29.29	       42.34	rs6867913-?	rs6867913	0	6867913	Intergenic	1	NR	4E-6	5.397940008672037		   1.33	[1.18-1.49] 	Illumina [6,103,628] (Imputed)	N
07/09/2012	22561531	Wan YI	05/05/2012	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/22561531	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	9p21.1	9	32433528	ACO1	ACO1			48			rs10970976-?	rs10970976	0	10970976	intron	0	NR	4E-6	5.397940008672037		   1.28	[1.16-1.43] 	Illumina [6,103,628] (Imputed)	N
07/09/2012	22561531	Wan YI	05/05/2012	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/22561531	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	17q12	17	39933091	ORMDL3	LOC101928947			101928947			rs4794820-?	rs4794820	0	4794820	intron	0	NR	1E-8	8		   1.33	[1.20-1.45] 	Illumina [6,103,628] (Imputed)	N
07/09/2012	22561531	Wan YI	05/05/2012	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/22561531	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	19q13.42	19	53178789	ZNF665	ZNF665			79788			rs16984547-?	rs16984547	0	16984547	intron	0	NR	4E-6	5.397940008672037		   1.43	[1.23-1.66] 	Illumina [6,103,628] (Imputed)	N
06/20/2012	22556244	Kenny EE	05/04/2012	Science	http://www.ncbi.nlm.nih.gov/pubmed/22556244	Melanesian blond hair is caused by an amino acid change in TYRP1.	Hair color	43 Solomon Islander ancestry blond haired individuals, 42 Solomon Islander ancestry dark haired individuals	NA	9p23	9	12396731	TYRP1	JKAMPP1 - TYRP1	100049717	7306		      107.50	      296.65	rs13289810-?	rs13289810	0	13289810	Intergenic	1	0.31	1E-19	19		NR	NR	Illumina [589,241]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	21q22.13	21	37654970	KCNJ6	KCNJ6			3763			rs2835872-G	rs2835872	0	2835872	intron	0	0.681	5E-10	9.301029995663981		    .15	[NR] unit decrease	Illumina [634,583]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	14q32.2	14	100217855	Intergenic	DEGS2 - YY1	123099	7528		       51.02	       20.91	rs2766692-G	rs2766692	0	2766692	Intergenic	1	0.691	2E-6	5.698970004336018		    .11	[NR] unit decrease	Illumina [634,583]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	22q13.31	22	44787134	PRR5, ARHGAP8	ARHGAP8;PRR5-ARHGAP8			23779;553158			rs16992796-G	rs16992796	0	16992796	intron;intron	0	0.05	3E-6	5.522878745280337		    .24	[NR] unit decrease	Illumina [634,583]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	3p11.2	3	87734826	Intergenic	PSMC1P6 - HTR1F	643766	3355		      103.16	       57.95	rs9860340-A	rs9860340	0	9860340	Intergenic	1	0.749	4E-6	5.397940008672037		    .12	[NR] unit decrease	Illumina [634,583]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	6p12.1	6	53442896	Intergenic	TRNAI25			100189401			rs9395865-T	rs9395865	0	9395865		0	0.279	6E-6	5.221848749616356		    .11	[NR] unit increase	Illumina [634,583]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	11q13.1	11	63825149	C11orf84	C11orf84			144097			rs10897449-T	rs10897449	0	10897449	intron	0	0.453	7E-6	5.154901959985742		    .10	[NR] unit decrease	Illumina [634,583]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	6p22.3	6	24862847	FAM65B	FAM65B			9750			rs4256430-A	rs4256430	0	4256430	intron	0	0.465	8E-6	5.096910013008055		    .10	[NR] unit decrease	Illumina [634,583]	N
07/03/2012	22554406	Kang SJ	05/03/2012	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/22554406	Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NR	15q26.2	15	96301498	Intergenic	NR2F2-AS1			644192			rs7181753-T	rs7181753	0	7181753	intron	0	0.199	3E-6	5.522878745280337		    .13	[NR] unit increase	Illumina [634,583]	N
06/27/2012	22551897	Mahasirimongkol S	05/03/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22551897	Genome-wide association studies of tuberculosis in Asians identify distinct at-risk locus for young tuberculosis.	Tuberculosis	433 Thai ancestry cases, 295 Thai ancestry controls, 188 Japanese ancestry cases, 934 Japanese ancestry controls	369 Thai ancestry cases, 439 Thai ancestry controls, 112 Japanese ancestry cases, 1,089 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [533,252]	N
06/27/2012	22570697	Matesanz F	05/03/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22570697	Genome-wide association study of multiple sclerosis confirms a novel locus at 5p13.1.	Multiple sclerosis	2,127 European ancestry cases, 4,558 European ancestry controls	2,785 European ancestry cases, 2,940 European ancestry controls	5p13.1	5	40437846	PTGER4	LINC00603 - PTGER4	102467077	5734		      384.52	      242.08	rs9292777-T	rs9292777	0	9292777	Intergenic	1	NR	1E-9	8.999999999999998		   1.19	[1.12-1.25] 	Affymetrix & Illumina [130,903]	N
06/27/2012	22570627	van Koolwijk LM	05/03/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22570627	Common genetic determinants of intraocular pressure and primary open-angle glaucoma.	Intraocular pressure	11,972 European ancestry individuals	7,482 European ancestry individuals	17p13.1	17	10130362	GAS7	GAS7			8522			rs11656696-A	rs11656696	0	11656696	intron	0	0.43	1E-8	8		    .19	[0.12-0.26] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/27/2012	22570627	van Koolwijk LM	05/03/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22570627	Common genetic determinants of intraocular pressure and primary open-angle glaucoma.	Intraocular pressure	11,972 European ancestry individuals	7,482 European ancestry individuals	1q24.1	1	165749742	TMCO1	TMCO1			54499			rs7555523-C	rs7555523	0	7555523	intron	0	0.12	2E-8	7.698970004336018		    .28	[0.18-0.37] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/26/2012	22560479	Forno E	05/02/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22560479	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 Other ancestry children	1q44	1	244347874	C1orf100	ZBTB18 - C1orf100	10472	200159		      290.40	        4.76	rs4658627-A	rs4658627	0	4658627	Intergenic	1	0.2418	6E-6	5.221848749616356		    .13	[NR] unit decrease	Illumina [512,296]	N
06/26/2012	22560479	Forno E	05/02/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22560479	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 Other ancestry children	3p26.2	3	3573203	IL5RA	CRBN - SUMF1	51185	285362		      393.49	      209.30	rs9815663-T	rs9815663	0	9815663	Intergenic	1	0.1820	2E-8	7.698970004336018		    .17	[NR] unit decrease	Illumina [512,296]	N
06/26/2012	22560479	Forno E	05/02/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22560479	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 Other ancestry children	11q24.2	11	127891771	NR	KIRREL3-AS3 - ETS1	283165	2113		      885.71	      566.99	rs7927044-A	rs7927044	0	7927044	Intergenic	1	0.0134	7E-9	8.154901959985743		    .16	[NR] unit decrease	Illumina [512,296]	N
06/26/2012	22560479	Forno E	05/02/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22560479	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 Other ancestry children	13q13.3	13	35777629	NR	DCLK1			9201			rs7328278-C	rs7328278	0	7328278	intron	0	0.0285	3E-6	5.522878745280337		    .13	[NR] unit increase	Illumina [512,296]	N
06/26/2012	22560479	Forno E	05/02/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22560479	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 Other ancestry children	17p12	17	13655763	NR	MIR548H3 - CDRT15P1	100302287	94158		      112.12	      368.74	rs10521233-G	rs10521233	0	10521233	Intergenic	1	0.0735	3E-6	5.522878745280337		    .14	[NR] unit decrease	Illumina [512,296]	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	1q24.2	1	170600176	PRRX1	GORAB - PRRX1	92344	5396		       46.34	       62.55	rs3903239-G	rs3903239	0	3903239	Intergenic	1	0.45	8E-14	13.09691001300805		   1.14	[1.10-1.17] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	5q31.2	5	138084300	WNT8A	WNT8A			7478			rs2040862-T	rs2040862	0	2040862	intron	0	0.18	3E-7	6.522878745280337		   1.12	[1.07-1.17] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	7q31.2	7	116546187	CAV1	CAV1			857			rs3807989-G	rs3807989	0	3807989	intron	0	0.60	4E-12	11.39794000867204		   1.11	[1.09-1.15] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	9q22.32	9	94951177	C9orf3	C9orf3			84909			rs10821415-A	rs10821415	0	10821415	intron	0	0.42	4E-11	10.39794000867204		   1.11	[1.08-1.15] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	10q22.2	10	73661450	SYNPO2L	SYNPO2L - AGAP5	79933	729092		        5.35	       12.83	rs10824026-A	rs10824026	0	10824026	Intergenic	1	0.84	4E-9	8.397940008672036		   1.15	[1.10-1.20] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	14q23.2	14	64214130	SYNE2	ESR2;SYNE2			2100;23224			rs1152591-A	rs1152591	0	1152591	intron;intron	0	0.48	6E-13	12.22184874961636		   1.13	[1.09-1.17] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	15q24.1	15	73359833	HCN4	HCN4			10021			rs7164883-G	rs7164883	0	7164883	intron	0	0.16	3E-17	16.52287874528034		   1.19	[1.14-1.24] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	1q21.3	1	154841792	KCNN3, PMVK	KCNN3			3782			rs6666258-C	rs6666258	0	6666258	intron	0	0.30	2E-14	13.69897000433602		   1.18	[1.13-1.23] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	4q25	4	110784612	PITX2	PITX2 - MIR297	5308	100126354		      142.49	       75.97	rs6817105-C	rs6817105	0	6817105	Intergenic	1	0.13	2E-74	73.69897000433602		   1.64	[1.55-1.73] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/19/2012	22544366	Ellinor PT	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544366	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	16q22.3	16	73017721	ZFHX3	ZFHX3			463			rs2106261-T	rs2106261	0	2106261	intron	0	0.176	3E-16	15.52287874528034		   1.24	[1.17-1.30] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/13/2012	22544364	Turnbull C	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544364	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	1p32.3	1	55047322	NR	PCSK9			255738			rs2495478-T	rs2495478	0	2495478	intron	0	0.04	1E-7	7		   1.40	[1.15-1.72] 	Illumina [599,255]	N
07/13/2012	22544364	Turnbull C	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544364	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	2p24.3	2	15589696	DDX1, MYCN	DDX1			1653			rs3755132-G	rs3755132	0	3755132	nearGene-5	0	0.14	1E-14	14		   1.45	[1.29-1.64] 	Illumina [599,255]	N
07/13/2012	22544364	Turnbull C	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544364	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	5q14.3	5	92558085	NR	PCBP2P3 - LDHBP3	100131236	100129283		      713.56	      282.75	rs1027643-T	rs1027643	0	1027643	Intergenic	1	0.05	5E-10	9.301029995663981		   1.43	[1.18-1.73] 	Illumina [599,255]	N
07/13/2012	22544364	Turnbull C	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544364	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	11q14.1	11	83909744	DLG2	DLG2			1740			rs790356-G	rs790356	0	790356	intron	0	0.5	4E-15	14.39794000867204		   1.28	[1.17-1.39] 	Illumina [599,255]	N
07/13/2012	22544364	Turnbull C	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544364	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	22q12.2	22	30617309	NR	TCN2			6948			rs2283873-A	rs2283873	0	2283873	intron	0	0.02	5E-12	11.30102999566398		   2.05	[1.57-2.69] 	Illumina [599,255]	N
07/13/2012	22544364	Turnbull C	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544364	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	Xp22.13	23	17680277	NR	NHS			4810			rs5955543-G	rs5955543	0	5955543	intron	0	0.01	1E-9	8.999999999999998		   2.64	[1.74-4.01] 	Illumina [599,255]	N
07/13/2012	22544364	Turnbull C	04/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22544364	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	2p24.3	2	15642347	DDX1, MYCN	DDX1 - RNU5E-7P	1653	100873836		       11.24	      222.59	rs807624-A	rs807624	0	807624	Intergenic	1	0.35	1E-14	14		   1.33	[1.22-1.45] 	Illumina [599,255]	N
06/22/2012	22605921	Gibson J	04/28/2012	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/22605921	Genome-wide association study of primary open angle glaucoma risk and quantitative traits.	Glaucoma (primary open-angle)	387 European ancestry cases, 5,380 European ancestry controls	294 European ancestry cases, 50 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [681,552]	N
06/22/2012	22558097	Milton JN	04/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22558097	A genome-wide association study of total bilirubin and cholelithiasis risk in sickle cell anemia.	Cholelithiasis-related traits in sickle cell anemia	905 African American cases	2,152 African American cases	2q37.1	2	233759924	UGT1A1, UGT1A10	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs887829-A	rs887829	0	887829	intron;intron;intron;intron;intron;intron;intron;nearGene-5;intron	0	0.45	5E-25	24.30102999566398		    .19	[NR] unit increase	Illumina [569,615]	N
06/22/2012	22558069	Osman W	04/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22558069	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels 	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	17p11.2	17	16960324	TNFRSF13B	TNFRSF13B			23495			rs4985726-G	rs4985726	0	4985726	intron	0	0.375	1E-14	14	(TP)	    .11	[0.080-0.134] unit increase	Illumina [2,178,644] (imputed)	N
06/22/2012	22558069	Osman W	04/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22558069	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels 	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-C	rs1260326	0	1260326	missense	0	0.445	3E-9	8.522878745280337	(ALB)	    .08	[0.053-0.107] unit decrease	Illumina [2,178,644] (imputed)	N
06/22/2012	22558069	Osman W	04/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22558069	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels 	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	17p11.2	17	16960324	TNFRSF13B	TNFRSF13B			23495			rs4985726-G	rs4985726	0	4985726	intron	0	0.375	7E-24	23.15490195998574	(NAP)	    .14	[0.11-0.16] unit increase	Illumina [2,178,644] (imputed)	N
06/22/2012	22558069	Osman W	04/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22558069	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels 	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	17p13.1	17	7559652	TNFSF13	TNFSF13;TNFSF12-TNFSF13			8741;407977			rs3803800-A	rs3803800	0	3803800	missense;missense	0	0.311	7E-15	14.15490195998574	(NAP)	    .10	[0.079-0.129] unit increase	Illumina [2,178,644] (imputed)	N
06/22/2012	22558069	Osman W	04/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22558069	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels 	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	4q21.21	4	78667891	ANXA3	LINC01094			100505702			rs10007186-C	rs10007186	0	10007186	intron	0	0.307	1E-9	8.999999999999998	(NAP)	    .09	[0.058-0.112] unit increase	Illumina [2,178,644] (imputed)	N
06/20/2012	22538805	Tantisira KG	04/26/2012	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/22538805	Genome-wide association identifies the T gene as a novel asthma pharmacogenetic locus.	Asthma	418 European ancestry cases	407 European ancestry cases	6q27	6	166121254	T	GAPDHP72 - T	346085	6862		       55.75	       36.40	rs6456042-?	rs6456042	0	6456042	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [444,088]	N
06/18/2012	22570617	Wiggs JL	04/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22570617	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	9p21.3	9	22033367	CDKN2BAS	CDKN2B-AS1			100048912			rs2157719-?	rs2157719	0	2157719	intron	0	NR	2E-18	17.69897000433602		   1.45	[1.33-1.59] 	Illumina [495,132] (imputed)	N
06/18/2012	22570617	Wiggs JL	04/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22570617	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	14q23.1	14	60606157	SIX1, SIX6	RPS15AP4 - SIX1	654371	6495		        3.61	       38.54	rs10483727-A	rs10483727	0	10483727	Intergenic	1	NR	4E-11	10.39794000867204		   1.32	[1.21-1.43] 	Illumina [495,132] (imputed)	N
06/18/2012	22570617	Wiggs JL	04/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22570617	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	9p21.3	9	22033367	CDKN2BAS	CDKN2B-AS1			100048912			rs2157719-?	rs2157719	0	2157719	intron	0	NR	1E-12	12	(NPG)	   1.72	[1.49-2.00] 	Illumina [495,132] (imputed)	N
06/18/2012	22570617	Wiggs JL	04/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22570617	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	8q22.3	8	104945792	LRP12, ZFPM2	LRP12 - RPL23P9	29967	100129377		      356.77	       35.35	rs284489-?	rs284489	0	284489	Intergenic	1	NR	9E-10	9.045757490560675	(NPG)	   1.61	[1.39-1.89] 	Illumina [495,132] (imputed)	N
06/18/2012	22541561	Zhao H	04/26/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22541561	A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.	Non-obstructive azoospermia	802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls	1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls	6p21.32	6	32443869	HLA-DRA	HLA-DRA			3122			rs7192-T	rs7192	0	7192	missense	0	0.26	3E-6	5.522878745280337		   1.29	[NR] 	Illumina & Affymetrix [912,924]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10p12.1	10	27736842	MKX	MKX			283078			rs10508727-?	rs10508727	0	10508727	intron	0	NR	1E-10	10	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p12	8	33808162	LOC388460	VENTXP5 - RPL6P22	442384	388460		       85.07	       51.19	rs10503951-?	rs10503951	0	10503951	Intergenic	1	NR	3E-9	8.522878745280337	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10p12.1	10	25629950	GPR158	GPR158 - GPN3P1	57512	100302689		       27.72	       17.13	rs12775535-?	rs12775535	0	12775535	Intergenic	1	NR	4E-9	8.397940008672036	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8q24.13	8	122960828	ZHX2	ZHX2			22882			rs10108684-?	rs10108684	0	10108684	intron	0	NR	1E-8	8	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	18p11.21	18	12606464	SPIRE1	SPIRE1			56907			rs9959145-?	rs9959145	0	9959145	intron	0	NR	3E-8	7.522878745280337	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	1q43	1	240542807	GREM2	GREM2			64388			rs10495471-?	rs10495471	0	10495471	intron	0	NR	2E-7	6.698970004336019	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p23.2	8	4442361	CSMD1	CSMD1			64478			rs17070309-?	rs17070309	0	17070309	intron	0	NR	5E-7	6.30102999566398	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	21q22.12	21	34866210	RUNX1	RUNX1			861			rs2834655-?	rs2834655	0	2834655	intron	0	NR	5E-7	6.30102999566398	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	6p22.3	6	17240923	RBM24	STMND1 - RBM24	401236	221662		      109.55	       40.59	rs1322846-?	rs1322846	0	1322846	Intergenic	1	NR	6E-7	6.221848749616355	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	14q32.2	14	97996820	LOC100132612	C14orf64 - C14orf177	388011	283598		       18.70	      714.79	rs7140601-?	rs7140601	0	7140601	Intergenic	1	NR	7E-7	6.154901959985743	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	18p11.21	18	12550748	SPIRE1	SPIRE1			56907			rs1940973-?	rs1940973	0	1940973	intron	0	NR	8E-7	6.096910013008056	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	1q25.2	1	178173073	RASAL2	RASAL2			9462			rs316274-?	rs316274	0	316274	intron	0	NR	8E-7	6.096910013008056	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p12	8	33815493	LOC388460	VENTXP5 - RPL6P22	442384	388460		       92.40	       43.86	rs11786194-?	rs11786194	0	11786194	Intergenic	1	NR	9E-7	6.045757490560675	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	8p12	8	33707860	VENTXP5	DUSP26 - VENTXP5	78986	442384		      107.83	       13.33	rs4469412-?	rs4469412	0	4469412	Intergenic	1	NR	9E-7	6.045757490560675	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	3p26.2	3	3088961	IL5RA	IL5RA			3568			rs3804795-?	rs3804795	0	3804795	intron	0	NR	1E-6	5.999999999999999	(AA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10q21.1	10	53624983	PCDH15	SNRPEP8 - PCDH15	100874423	65217		      586.44	      177.79	rs12256830-?	rs12256830	0	12256830	Intergenic	1	NR	2E-10	9.698970004336017	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10p14	10	6564579	PRKCQ	PRKCQ			5588			rs4748153-?	rs4748153	0	4748153	intron	0	NR	3E-8	7.522878745280337	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	6p21.2	6	39561206	KIF6, LOC100131899	KIF6			221458			rs9380880-?	rs9380880	0	9380880	intron	0	NR	1E-7	7	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10q23.33	10	95007177	CYP2C9	MTND4P20 - CYP2C59P	100873352	100874505		       65.68	         .22	rs2860975-?	rs2860975	0	2860975	Intergenic	1	NR	2E-7	6.698970004336019	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	12q24.33	12	132769223	ANKLE2, GOLGA3	GOLGA3			2802			rs12282-?	rs12282	0	12282	UTR-3	0	NR	3E-7	6.522878745280337	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10q23.33	10	95037713	CYP2C8	CYP2C8			1558			rs1934953-?	rs1934953	0	1934953	intron	0	NR	5E-7	6.30102999566398	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	20p13	20	2014888	PDYN	PDYN - RPL7P2	5173	140695		       20.60	       60.67	rs6081597-?	rs6081597	0	6081597	Intergenic	1	NR	7E-7	6.154901959985743	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	15q21.3	15	54576470	UNC13C	UNC13C			440279			rs2553218-?	rs2553218	0	2553218	intron	0	NR	8E-7	6.096910013008056	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	3p26.2	3	3334100	CRBN	CRBN - SUMF1	51185	285362		      154.38	      448.40	rs9835812-?	rs9835812	0	9835812	Intergenic	1	NR	8E-7	6.096910013008056	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	5p15.33	5	3558424	IRX1	LINC01019 - IRX1	285577	79192		       22.33	       37.63	rs10512697-?	rs10512697	0	10512697	Intergenic	1	NR	9E-7	6.045757490560675	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	5q11.2	5	54606509	SNX18	SNX18 - ESM1	112574	11082		       59.92	      371.36	rs2548621-?	rs2548621	0	2548621	Intergenic	1	NR	9E-7	6.045757490560675	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	15q25.1	15	80708937	FAM108C1	ABHD17C			58489			rs12148329-?	rs12148329	0	12148329	intron	0	NR	9E-7	6.045757490560675	(Hispanic)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	11p12	11	42294336	LOC387761	RPL9P23 - HNRNPKP3	100131020	399881		      755.35	      967.17	rs7394570-?	rs7394570	0	7394570	Intergenic	1	NR	1E-6	5.999999999999999	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	12q21.31	12	82591100	TMTC2	METTL25 - TMTC2	84190	160335		      111.86	       96.06	rs12425131-?	rs12425131	0	12425131	Intergenic	1	NR	2E-6	5.698970004336018	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	2q35	2	218976169	FEV, LOC151300	LINC00608			151300			rs359965-?	rs359965	0	359965	nearGene-5	0	NR	2E-6	5.698970004336018	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	21q22.2	21	38942780	FLJ45139	RPSAP64 - RPL23AP12	100873797	391282		       47.59	      184.78	rs2836770-?	rs2836770	0	2836770	Intergenic	1	NR	3E-6	5.522878745280337	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	12q21.31	12	82625409	TMTC2	METTL25 - TMTC2	84190	160335		      146.17	       61.75	rs11115322-?	rs11115322	0	11115322	Intergenic	1	NR	3E-6	5.522878745280337	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	4p16.3	4	288710	LOC654254	ZNF732			654254			rs11723261-?	rs11723261	0	11723261	intron	0	NR	4E-6	5.397940008672037	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	3p14.3	3	55001847	CACNA2D3	CACNA2D3			55799			rs4955826-?	rs4955826	0	4955826	intron	0	NR	5E-6	5.301029995663981	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	2p23.3	2	26049733	RAB10	RAB10			10890			rs13388915-?	rs13388915	0	13388915	intron	0	NR	8E-6	5.096910013008055	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	22q11.23	22	23302607	BCR	BCR			613			rs9608102-?	rs9608102	0	9608102	intron	0	NR	8E-6	5.096910013008055	(EA)	NR	NR	Illumina [NR]	N
07/04/2012	22542470	Ovsyannikova IG	04/25/2012	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/22542470	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	1q31.1	1	189620209	LOC647132	RPS3AP9 - RNA5SP73	100271129	100873307		      925.05	       45.94	rs10489759-?	rs10489759	0	10489759	Intergenic	1	NR	8E-8	7.096910013008055	(EA)	NR	NR	Illumina [NR]	N
06/18/2012	22524403	Rice JP	04/24/2012	Addiction	http://www.ncbi.nlm.nih.gov/pubmed/22524403	CHRNB3 is more strongly associated with Fagerström test for cigarette dependence-based nicotine dependence than cigarettes per day: phenotype definition changes genome-wide association studies results.	Nicotine dependence	2,267 European ancestry individuals, 99 Hispanic individuals, 999 African American individuals	835 individuals	8p11.21	8	42691568	CHRNB3	SMIM19 - CHRNB3	114926	1142		      138.57	        5.85	rs1451240-?	rs1451240	0	1451240	Intergenic	1	NR	7E-16	15.15490195998574		NR	NR	Illumina [948,658]	N
07/11/2012	22532574	Stevens KN	04/24/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22532574	Identification of a novel percent mammographic density locus at 12q24.	Mammographic density	1,241 European ancestry females	9,126 European ancestry females	12q24.21	12	114430333	TBX5, TBX3	TBX5-AS1 - OSTF1P1	255480	386654		       17.50	      157.72	rs1265507-?	rs1265507	0	1265507	Intergenic	1	NR	1E-8	8		NR	NR	Illumina [2,510,880] (pooled)	N
06/18/2012	22513714	Shin J	04/19/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22513714	Genetic architecture for susceptibility to gout in the KARE cohort study.	Gout	520 Korean ancestry cases, 8,314 Korean ancestry controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [NR] (imputed)	N
06/19/2012	22508271	Rasmussen-Torvik LJ	04/16/2012	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/22508271	Fasting glucose GWAS candidate region analysis across ethnic groups in the Multiethnic Study of Atherosclerosis (MESA).	Fasting plasma glucose	2,349 European ancestry individuals, 664 Chinese ancestry individuals, 1,366 African American individuals, 1,171 Hispanic individuals	NA	11q14.3	11	92975544	MTNR1B	MTNR1B			4544			rs10830963-G	rs10830963	0	10830963	intron	0	0.27	1E-12	12	(Fasting glucose)	   1.38	[1.01-1.75] mg/dL increase	Affymetrix [NR] (imputed)	N
06/19/2012	22508271	Rasmussen-Torvik LJ	04/16/2012	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/22508271	Fasting glucose GWAS candidate region analysis across ethnic groups in the Multiethnic Study of Atherosclerosis (MESA).	Fasting plasma glucose	2,349 European ancestry individuals, 664 Chinese ancestry individuals, 1,366 African American individuals, 1,171 Hispanic individuals	NA	7p13	7	44196069	GCKR	GCK - YKT6	2645	10652		        6.65	        4.90	rs4607517-G	rs4607517	0	4607517	Intergenic	1	0.19	1E-7	7	(fasting gluocse)	   1.15	[0.72-1.58] mg/dL decrease	Affymetrix [NR] (imputed)	N
06/19/2012	22508271	Rasmussen-Torvik LJ	04/16/2012	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/22508271	Fasting glucose GWAS candidate region analysis across ethnic groups in the Multiethnic Study of Atherosclerosis (MESA).	Fasting plasma glucose	2,349 European ancestry individuals, 664 Chinese ancestry individuals, 1,366 African American individuals, 1,171 Hispanic individuals	NA	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-T	rs560887	0	560887	intron	0	0.20	2E-6	5.698970004336018	(fasting glucose)	   1.29	[0.84-1.74] mg/dL decrease	Affymetrix [NR] (imputed)	N
06/18/2012	22494929	Rawal R	04/16/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22494929	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	5q13.3	5	77239986	PDE8B	PDE8B			8622			rs2046045-T	rs2046045	0	2046045	intron	0	0.618	3E-27	26.52287874528033		    .12	[0.093-0.137] unit decrease	Affymetrix & Illumina [2,524,918] (imputed)	N
06/18/2012	22494929	Rawal R	04/16/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22494929	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	1p36.13	1	19534612	CAPZB	CAPZB - MINOS1	832	440574		       48.97	       62.37	rs10917477-A	rs10917477	0	10917477	Intergenic	1	0.511	2E-8	7.698970004336018		    .06	[0.038-0.078] unit decrease	Affymetrix & Illumina [2,524,918] (imputed)	N
06/18/2012	22494929	Rawal R	04/16/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22494929	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	4q31.23	4	148731458	NR3C2	ATP5LP4 - DCLK2	100130396	166614		       27.63	     1346.82	rs10028213-C	rs10028213	0	10028213	Intergenic	1	0.823	3E-10	9.522878745280336		    .08	[0.059-0.109] unit increase	Affymetrix & Illumina [2,524,918] (imputed)	N
06/18/2012	22494929	Rawal R	04/16/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22494929	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	16q23.2	16	79715456	LOC440389, MAF	MAF - DYNLRB2	4094	83657		      114.73	      825.50	rs3813582-T	rs3813582	0	3813582	Intergenic	1	0.681	6E-10	9.221848749616356		    .07	[0.046-0.090] unit increase	Affymetrix & Illumina [2,524,918] (imputed)	N
06/02/2012	22504421	Bis JC	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504421	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	2q24.2	2	162053713	DPP4	DPP4			1803			rs6741949-G	rs6741949	0	6741949	intron	0	0.53	3E-7	6.522878745280337		  52.80	[32.61-72.99] mm3 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/02/2012	22504421	Bis JC	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504421	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	9q33.1	9	116487060	ASTN2	ASTN2			23245			rs7852872-C	rs7852872	0	7852872	intron	0	0.62	1E-7	7		  47.70	[30.06-65.34] mm3 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/02/2012	22504421	Bis JC	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504421	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	12q14.3	12	65324519	MSRB3	MSRB3			253827			rs17178006-G	rs17178006	0	17178006	intron	0	0.10	5E-11	10.30102999566398		 123.80	[86.76-160.84] mm3 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/02/2012	22504421	Bis JC	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504421	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	12q14.3	12	65140844	WIF1	APOOP3 - LEMD3	100131528	23592		        5.28	       28.73	rs6581612-C	rs6581612	0	6581612	Intergenic	1	0.27	7E-11	10.15490195998574		  63.30	[44.29-82.31] mm3 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/02/2012	22504421	Bis JC	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504421	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	12q24.22	12	116889787	HRK	HRK - RPL36P15	8739	100271334		        8.36	       18.53	rs7294919-T	rs7294919	0	7294919	Intergenic	1	0.91	3E-11	10.52287874528034		 107.80	[76.05-139.55] mm3 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7q36.1	7	151222743	ABCF2	ABCF2			10061			rs7812088-A	rs7812088	0	7812088	intron	0	0.13	7E-9	8.154901959985743	(FNBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	13q14.11	13	42377313	AKAP11	FABP3P2 - TNFSF11	56677	8600		        7.56	      185.42	rs9533090-T	rs9533090	0	9533090	Intergenic	1	0.49	5E-68	67.30102999566397	(LSBMD)	    .10	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2q13	2	111742458	ANAPC1	RPL34P8 - ANAPC1	100270999	64682		       67.12	       25.18	rs17040773-A	rs17040773	0	17040773	Intergenic	1	0.76	2E-9	8.698970004336019	(FNBMD)	    .04	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p11.2	11	46700671	ARHGAP1	ARHGAP1;ZNF408			392;79797			rs7932354-T	rs7932354	0	7932354	nearGene-5;nearGene-5	0	0.31	5E-18	17.30102999566398	(FNBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16p13.3	16	325782	AXIN1	AXIN1			8312			rs9921222-T	rs9921222	0	9921222	intron	0	0.48	1E-16	16	(LSBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p15.5	11	202856	BET1L	BET1L			51272			rs11602954-A	rs11602954	0	11602954	intron	0	0.24	2E-6	5.698970004336018	(LSBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q23.3	12	106973447	C12orf23	TMEM263			90488			rs1053051-T	rs1053051	0	1053051	UTR-3	0	0.52	1E-9	8.999999999999998	(FNBMD)	    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16p13.3	16	1482462	C16orf38	RPS3AP2 - PTX4	64725	390667		        3.87	        3.48	rs13336428-A	rs13336428	0	13336428	Intergenic	1	0.43	1E-16	16	(FNBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q21.31	17	44148179	C17orf53	C17orf53			78995			rs227584-A	rs227584	0	227584	missense	0	0.7	3E-24	23.52287874528033	(FNBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	18p11.21	18	13708575	C18orf19	FAM210A			125228			rs4796995-A	rs4796995	0	4796995	intron	0	0.63	5E-8	7.30102999566398	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6q25.1	6	151586613	C6orf97	CCDC170			80129			rs4869742-T	rs4869742	0	4869742	intron	0	0.31	4E-35	34.39794000867204	(LSBMD)	    .08	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7q31.31	7	121145010	C7orf58	CPED1			79974			rs13245690-A	rs13245690	0	13245690	intron	0	0.65	2E-11	10.69897000433602	(LSBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	21q22.12	21	36112764	CBR3	LOC100133286			100133286			rs4817775-A	rs4817775	0	4817775	intron	0	0.59	9E-7	6.045757490560675	(LSBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6p22.3	6	21384382	CDKAL1	RPL36AP25 - LINC00581	100271331	100874531		      661.81	      101.68	rs9466056-A	rs9466056	0	9466056	Intergenic	1	0.38	3E-13	12.52287874528034	(FNBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p21.1	1	102993981	COL11A1	COL11A1			1301			rs11809524-T	rs11809524	0	11809524	intron	0	0.85	9E-6	5.045757490560675	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10q24.2	10	100054045	CPN1	CPN1			1369			rs7084921-T	rs7084921	0	7084921	intron	0	0.39	9E-10	9.045757490560675	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	3p22.1	3	41087073	CTNNB1	RPS27P4 - MRPS31P1	389112	351449		      325.22	      101.96	rs430727-T	rs430727	0	430727	Intergenic	1	0.48	4E-25	24.39794000867203	(FNBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16q12.1	16	50952397	CYLD	RNA5SP426 - SOD1P2	100873677	100652974		       82.82	      155.18	rs1564981-A	rs1564981	0	1564981	Intergenic	1	0.5	2E-10	9.698970004336017	(LSBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p14.1	11	30930127	DCDC5	DCDC5			100506627			rs163879-T	rs163879	0	163879	intron	0	0.68	2E-11	10.69897000433602	(LSBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q13.12	12	49080822	DHH	RHEBL1 - DHH	121268	50846		       10.80	        8.60	rs12821008-T	rs12821008	0	12821008	Intergenic	1	0.39	1E-15	15	(LSBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1q24.3	1	172230433	DNM3	DNM3			26052			rs479336-T	rs479336	0	479336	intron	0	0.74	9E-15	14.04575749056067	(FNBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12p13.33	12	1529005	ERC1	LINC00942 - FBXL14	100292680	144699		       24.58	       36.99	rs2887571-A	rs2887571	0	2887571	Intergenic	1	0.76	6E-12	11.22184874961635	(LSBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16q24.1	16	86677054	FOXL1	FOXL1 - RPL39P30	2300	100271519		       95.36	      591.08	rs10048146-A	rs10048146	0	10048146	Intergenic	1	0.8	1E-14	14	(FNBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	9q34.11	9	130603440	FUBP3	FUBP3			8939			rs7851693-C	rs7851693	0	7851693	intron	0	0.64	3E-22	21.52287874528033	(FNBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2q24.3	2	165744536	GALNT3	CSRNP3 - GALNT3	80034	2591		       55.13	        3.27	rs1346004-A	rs1346004	0	1346004	Intergenic	1	0.5	4E-30	29.39794000867203	(LSBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	19q13.11	19	33108221	GPATCH1	GPATCH1			55094			rs10416218-T	rs10416218	0	10416218	intron	0	0.73	7E-11	10.15490195998574	(LSBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7p12.1	7	50686982	GRB10	GRB10			2887			rs2282930-A	rs2282930	0	2282930	intron	0	0.24	3E-6	5.522878745280337	(FNBMD)	    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q13.13	12	54023792	HOXC6	HOXC4;HOXC5;HOXC6			3221;3222;3223			rs736825-C	rs736825	0	736825	intron;intron;intron	0	0.56	8E-16	15.09691001300805	(LSBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	4p16.3	4	1000626	IDUA	IDUA			3425			rs3755955-A	rs3755955	0	3755955	missense	0	0.16	5E-15	14.30102999566398	(LSBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2q14.2	2	118281022	INSIG2	INSIG2 - EN1	51141	2019		      170.99	      561.15	rs1878526-A	rs1878526	0	1878526	Intergenic	1	0.22	1E-10	10	(LSBMD)	    .04	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	20p12.2	20	10659340	JAG1	JAG1			182			rs3790160-T	rs3790160	0	3790160	intron	0	0.5	3E-19	18.52287874528033	(LSBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10q22.3	10	77641558	KCNMA1	RNA5SP321 - RBBP6P1	100873587	100129156		       54.40	       96.66	rs7071206-T	rs7071206	0	7071206	Intergenic	1	0.78	5E-19	18.30102999566398	(LSBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	3q13.2	3	113651163	KIAA2018	KIAA2018			205717			rs1026364-T	rs1026364	0	1026364	UTR-3	0	0.37	4E-10	9.397940008672037	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12p11.22	12	27864226	KLHDC5	KLHL42 - PTHLH	57542	5744		       61.19	       93.86	rs7953528-A	rs7953528	0	7953528	Intergenic	1	0.18	2E-12	11.69897000433602	(FNBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	3q25.31	3	156838195	LEKR1	LEKR1			389170			rs344081-T	rs344081	0	344081	intron	0	0.87	4E-12	11.39794000867204	(LSBMD)	    .06	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p14.1	11	27484130	LIN7C	RPL37AP7			100131730			rs10835187-T	rs10835187	0	10835187		0	0.55	5E-8	7.30102999566398	(LSBMD)	    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11q13.2	11	68433827	LRP5	LRP5			4041			rs3736228-T	rs3736228	0	3736228	missense	0	0.16	2E-26	25.69897000433602	(LSBMD)	    .08	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q21.31	17	45900461	MAPT	MAPT			4137			rs1864325-T	rs1864325	0	1864325	intron	0	0.22	5E-11	10.30102999566398	(LSBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	14q32.32	14	103417296	MARK3	MARK3			4140			rs11623869-T	rs11623869	0	11623869	intron	0	0.35	5E-16	15.30102999566398	(FNBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10q21.1	10	52668065	MBL2	PRKRIRP3 - MBL2	399774	4153		      254.57	       92.80	rs1373004-T	rs1373004	0	1373004	Intergenic	1	0.13	2E-12	11.69897000433602	(LSBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	5q14.3	5	89080244	MEF2C	MEF2C-AS1 - MIR3660	101929423	100500825		       47.87	      936.38	rs1366594-A	rs1366594	0	1366594	Intergenic	1	0.54	4E-61	60.39794000867204	(FNBMD)	    .08	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	4q22.1	4	87852697	MEPE	MEPE - HSP90AB3P	56955	3327		        5.88	       39.05	rs6532023-T	rs6532023	0	6532023	Intergenic	1	0.34	1E-27	27	(LSBMD)	    .06	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10p12.1	10	28191013	MPP7	MPP7			143098			rs3905706-T	rs3905706	0	3905706	intron	0	0.22	2E-16	15.69897000433602	(LSBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16p13.11	16	15035602	NTAN1	PDXDC1			23042			rs4985155-A	rs4985155	0	4985155	intron	0	0.67	2E-10	9.698970004336017	(FNBMD)	    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2p21	2	42023409	PKDCC	C2orf91 - PKDCC	400950	91461		       69.61	       24.61	rs7584262-T	rs7584262	0	7584262	Intergenic	1	0.23	1E-9	8.999999999999998	(FNBMD)	    .04	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	8q21.12	8	78122224	PKIA	HIGD1AP18 - PKIA	100874456	5569		     1108.17	      393.88	rs13272568-A	rs13272568	0	13272568	Intergenic	1	0.44	6E-7	6.221848749616355	(FNBMD)	    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p36.23	1	8387662	RERE	RERE			473			rs2120461-T	rs2120461	0	2120461	intron	0	0.67	3E-6	5.522878745280337	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	14q32.11	14	90976435	RPS6KA5	RPS6KA5;LOC102724461			9252;102724461			rs1286083-T	rs1286083	0	1286083	intron;nearGene-5	0	0.81	2E-15	14.69897000433602	(FNBMD)	    .05	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6q22.33	6	126845927	RSPO3	RPS4XP9 - RSPO3	442257	84870		      162.02	      272.77	rs13204965-A	rs13204965	0	13204965	Intergenic	1	0.76	8E-12	11.09691001300806	(FNBMD)	    .04	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	22q11.22	22	23135783	RTDR1	RTDR1			27156			rs4820539-A	rs4820539	0	4820539	intron	0	0.42	2E-7	6.698970004336019	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16q12.1	16	50987892	SALL1	RNA5SP426 - SOD1P2	100873677	100652974		      118.32	      119.69	rs1566045-T	rs1566045	0	1566045	Intergenic	1	0.8	2E-22	21.69897000433602	(FNBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11q13.1	11	65493175	SCYL1	MIR612 - MALAT1	693197	378938		       48.62	        4.59	rs600231-A	rs600231	0	600231	Intergenic	1	0.7	4E-6	5.397940008672037	(FNBMD)	    .02	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7q21.3	7	96491363	SLC25A13	C7orf76			401388			rs4727338-C	rs4727338	0	4727338	intron	0	0.67	8E-48	47.09691001300806	(FNBMD)	    .08	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17p13.3	17	2165638	SMG6	SMG6			23293			rs4790881-A	rs4790881	0	4790881	intron	0	0.69	1E-18	18	(FNBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q21.31	17	43721456	SOST	WHSC1L2P - SOST	100128016	50964		        1.02	       32.28	rs4792909-T	rs4792909	0	4792909	Intergenic	1	0.37	2E-11	10.69897000433602	(FNBMD)	    .04	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p15.2	11	15688538	SOX6	LOC102724957			102724957			rs7108738-T	rs7108738	0	7108738	intron	0	0.83	1E-32	32	(FNBMD)	    .08	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q24.3	17	71952875	SOX9	CASC17 - LINC01152	101928165	102606463		      750.70	       77.78	rs7217932-A	rs7217932	0	7217932	Intergenic	1	0.46	2E-11	10.69897000433602	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q13.13	12	53334171	SP7	SP7			121340			rs2016266-A	rs2016266	0	2016266	intron	0	0.68	3E-20	19.52287874528034	(LSBMD)	    .05	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2p16.2	2	54432570	SPTBN1	LOC102724063;LOC102724072			102724063;102724072			rs4233949-C	rs4233949	0	4233949	intron;nearGene-5	0	0.38	2E-18	17.69897000433602	(LSBMD)	    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7p14.1	7	38088724	STARD3NL	EPDR1 - STARD3NL	54749	83930		      136.78	       89.48	rs6959212-T	rs6959212	0	6959212	Intergenic	1	0.32	4E-38	37.39794000867204	(LSBMD)	    .07	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	6p21.1	6	44671447	SUPT3H	TRNAI25			100189401			rs11755164-T	rs11755164	0	11755164		0	0.4	6E-11	10.22184874961635	(LSBMD)	    .04	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	18q21.33	18	62387624	TNFRSF11A	TNFRSF11A			8792			rs884205-A	rs884205	0	884205	UTR-3	0	0.27	2E-17	16.69897000433602	(LSBMD)	    .05	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	8q24.12	8	118995181	TNFRSF11B	COLEC10			10584			rs2062377-A	rs2062377	0	2062377	intron	0	0.57	3E-39	38.52287874528033	(LSBMD)	    .08	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7p14.1	7	37898820	TXNDC3	NME8			51314			rs10226308-A	rs10226308	0	10226308	intron	0	0.84	6E-13	12.22184874961636	(LSBMD)	    .06	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p31.3	1	68182033	WLS	WLS;GNG12-AS1			79971;100289178			rs12407028-T	rs12407028	0	12407028	intron;intron	0	0.6	3E-45	44.52287874528033	(LSBMD)	    .08	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	7q31.31	7	121334711	WNT16	WNT16			51384			rs3801387-A	rs3801387	0	3801387	intron	0	0.74	3E-51	50.52287874528033	(LSBMD)	    .09	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p36.12	1	22164231	WNT4	WNT4 - MIR4418	54361	100616433		       21.21	      102.01	rs7521902-A	rs7521902	0	7521902	Intergenic	1	0.31	1E-10	10	(LSBMD)	    .05	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	8q13.3	8	70678968	XKR9	XKR9			389668			rs7017914-A	rs7017914	0	7017914	intron	0	0.49	2E-7	6.698970004336019	(FNBMD)	    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2013	22504420	Estrada K	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504420	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p36.12	1	22384980	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      118.68	       66.87	rs6426749-C	rs6426749	0	6426749	Intergenic	1	0.17	7E-57	56.15490195998573	(FNBMD)	    .11	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/01/2012	22504418	Ikram MA	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504418	Common variants at 6q22 and 17q21 are associated with intracranial volume.	Intracranial volume	8,175 European ancestry individuals	1,752 European ancestry individuals	6q22.32	6	126643364	RSPO3, RNF146, CENPW	YAP1P3 - PRELID1P1	100419883	728666		       14.71	         .28	rs4273712-G	rs4273712	0	4273712	Intergenic	1	0.27	2E-13	12.69897000433602		  12.50	[NR] ml increase	Affymetrix & Illumina [2,229,753](imputed)	N
06/01/2012	22504418	Ikram MA	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504418	Common variants at 6q22 and 17q21 are associated with intracranial volume.	Intracranial volume	8,175 European ancestry individuals	1,752 European ancestry individuals	17q21.31	17	46109891	MAPT, GRN, CRHR1, STH	KANSL1			284058			rs9303525-G	rs9303525	0	9303525	intron	0	0.22	8E-15	14.09691001300805		  14.90	[NR] ml decrease	Affymetrix & Illumina [2,229,753](imputed)	N
06/21/2012	22504417	Stein JL	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504417	Identification of common variants associated with human hippocampal and intracranial volumes.	Brain structure	2,020 European ancestry neuropsychiatric disorder cases, 5,775 European ancestry controls	599 European ancestry neuropsychiatric disorder cases, 11,915 European ancestry controls, 143 European ancestry and African American neuropsychiatric disorder cases, 94 European ancestry and African American controls, 605 Hispanic controls	12q24.22	12	116889787	HRK, FBXW8	HRK - RPL36P15	8739	100271334		        8.36	       18.53	rs7294919-C	rs7294919	0	7294919	Intergenic	1	0.099	7E-16	15.15490195998574	(Mean bilateral hippocampal volume)	  47.58	[36.04-59.12] mm3 increase	Affymetrix & Illumina [NR] (imputed)	N
06/21/2012	22504417	Stein JL	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504417	Identification of common variants associated with human hippocampal and intracranial volumes.	Brain structure	2,020 European ancestry neuropsychiatric disorder cases, 5,775 European ancestry controls	599 European ancestry neuropsychiatric disorder cases, 11,915 European ancestry controls, 143 European ancestry and African American neuropsychiatric disorder cases, 94 European ancestry and African American controls, 605 Hispanic controls	12q14.3	12	65950030	HMGA2	HMGA2			8091			rs10784502-C	rs10784502	0	10784502	intron	0	0.49	1E-12	12	(Intracranial volume)	#######	[6525.78-11487.64] mm3 increase	Affymetrix & Illumina [NR] (imputed)	N
05/25/2012	22504419	Taal HR	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504419	Common variants at 12q15 and 12q24 are associated with infant head circumference.	Head circumference (infant)	10,768 European ancestry infants	8,321 European ancestry infants	12q24.31	12	123338164	SBNO1	SBNO1			55206			rs7980687-A	rs7980687	0	7980687	intron	0	0.20	8E-9	8.096910013008056		    .07	[0.049-0.099] SD increase	Affymetrix & Illumina [~2.4 million] (imputed)	N
05/25/2012	22504419	Taal HR	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504419	Common variants at 12q15 and 12q24 are associated with infant head circumference.	Head circumference (infant)	10,768 European ancestry infants	8,321 European ancestry infants	12q14.3	12	65964567	HMGA2	HMGA2			8091			rs1042725-T	rs1042725	0	1042725	UTR-3	0	0.49	3E-10	9.522878745280336		    .07	[0.045-0.085] SD decrease	Affymetrix & Illumina [~2.4 million] (imputed)	N
05/25/2012	22504419	Taal HR	04/15/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22504419	Common variants at 12q15 and 12q24 are associated with infant head circumference.	Head circumference (infant)	10,768 European ancestry infants	8,321 European ancestry infants	17q21.31	17	45718067	CRHR1, MAPT	CRHR1			1394			rs11655470-T	rs11655470	0	11655470	intron	0	0.49	4E-6	5.397940008672037		    .05	[0.028-0.068] SD increase	Affymetrix & Illumina [~2.4 million] (imputed)	N
05/25/2012	22503698	Bhatnagar R	04/12/2012	Oral Oncol	http://www.ncbi.nlm.nih.gov/pubmed/22503698	Genome-wide disease association study in chewing tobacco associated oral cancers.	Oral cancers (chewing tobacco related)	55 South Asian ancestry cases, 92 South Asian ancestry controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [316,018]	N
07/13/2012	22526605	Howson JM	04/12/2012	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/22526605	Genetic association of zinc transporter 8 (ZnT8) autoantibodies in type 1 diabetes cases.	Type 1 diabetes autoantibodies	Up to 2,142 European ancestry cases	855 European ancestry affected family members	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina & Affymetrix [775,249]	N
05/25/2012	22511988	Jylhava J	04/12/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22511988	A genome-wide association study identifies UGT1A1 as a regulator of serum cell-free DNA in young adults: The Cardiovascular Risk in Young Finns Study.	Circulating cell-free DNA	1,841 individuals	NA	2q37.1	2	233763993	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs6742078-T	rs6742078	0	6742078	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.60	2E-23	22.69897000433602		    .34	[0.27-0.40] ug/ml increase	Illumina [2,543,887] (imputed)	N
05/25/2012	22509378	Burri A	04/11/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22509378	A genome-wide association study of female sexual dysfunction.	Sexual dysfunction (female)	1,104 European ancestry twins	NR	6q14.3	6	86445536	Intergenic	NDUFA5P9 - HTR1E	100289579	3354		      230.96	      491.77	rs13202860-A	rs13202860	0	13202860	Intergenic	1	NR	1E-7	7	(Arousal)	    .42	[0.26-0.58] unit decrease	Illumina [2,287,762] (imputed)	N
05/25/2012	22509378	Burri A	04/11/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22509378	A genome-wide association study of female sexual dysfunction.	Sexual dysfunction (female)	1,104 European ancestry twins	NR	22q12.3	22	36813252	PVALB	PVALB			5816			rs4820255-C	rs4820255	0	4820255	intron	0	NR	2E-6	5.698970004336018	(Overall FSD)	    .37	[0.22-0.51] unit decrease	Illumina [2,287,762] (imputed)	N
05/25/2012	22509378	Burri A	04/11/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22509378	A genome-wide association study of female sexual dysfunction.	Sexual dysfunction (female)	1,104 European ancestry twins	NR	10p11.22	10	32346044	EPC1	EPC1;LOC102031319			80314;102031319			rs2370759-G	rs2370759	0	2370759	intron;nearGene-5	0	NR	2E-6	5.698970004336018	(Lubrication)	    .24	[0.14-0.33] unit increase	Illumina [2,287,762] (imputed)	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	20p13	20	2774842	Intergenic	EBF4 - RPL19P1	57593	140759		       14.73	        5.77	rs6138892-?	rs6138892	0	6138892	Intergenic	1	0.15	3E-7	6.522878745280337	(CTJC , EA, RF-)	  10.93	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	3p26.1	3	6214310	Intergenic	MRPS35P1 - MRPS36P1	339910	347705		      767.21	      558.73	rs6774280-?	rs6774280	0	6774280	Intergenic	1	0.23	9E-7	6.045757490560675	(CSJC , EA, RF-)	   5.50	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	1p36.22	1	9348900	SPSB1	SPSB1			80176			rs11121380-?	rs11121380	0	11121380	intron	0	0.07	5E-8	7.30102999566398	(CSJC , EA, RF-)	  11.11	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	3p25.3	3	10835926	SLC6A11	SLC6A11			6538			rs1809529-?	rs1809529	0	1809529	intron	0	0.34	3E-7	6.522878745280337	(CHAQ, RF-)	    .28	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	11p15.3	11	11482681	Intergenic	GALNT18			374378			rs7940423-?	rs7940423	0	7940423	intron	0	0.011	1E-7	7	(CSJC, RF+)	  10.90	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	19p13.12	19	15566899	Intergenic	CYP4F23P			100422238			rs1273516-?	rs1273516	0	1273516		0	0.39	9E-7	6.045757490560675	(CSJC , EA, RF-)	   4.26	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	5p14.3	5	21749239	Intergenic	GUSBP1 - CDH12	728411	1010		      159.87	        1.63	rs12109285-?	rs12109285	0	12109285	Intergenic	1	0.011	1E-7	7	(CSJC , EA, RF+)	 130.20	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	12p11.21	12	32384554	Intergenic	BICD1 - FGD4	636	121512		         .92	       15.08	rs11051970-?	rs11051970	0	11051970	Intergenic	1	0.34	1E-6	5.999999999999999	(CSJC, RF+)	   2.08	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q14	15	36057645	Intergenic	MIR4510 - COX6CP4	100616293	100288892		      130.72	      514.29	rs1898036-?	rs1898036	0	1898036	Intergenic	1	0.1	2E-7	6.698970004336019	(CSJC , EA, RF-)	   7.73	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	NR			Intergenic	 - 						GA009635-?	GA009635					0.034	7E-7		(CSJC, RF-)	  12.51	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	9p13.2	9	37037979	Intergenic	LOC100130458			100130458			rs1329568-?	rs1329568	0	1329568	ncRNA	0	0.029	8E-7	6.096910013008056	(CSJC, RF-)	  19.64	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	18q12.3	18	42857686	Intergenic	RIT2			6014			rs16977065-?	rs16977065	0	16977065	intron	0	0.044	1E-7	7	(CSJC , EA, RF+)	  33.72	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	13q14.11	13	43642928	ENOX1	ENOX1			55068			rs4942242-?	rs4942242	0	4942242	intron	0	0.47	2E-7	6.698970004336019	(CHAQ, RF+)	    .13	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	14q21.3	14	47405354	MDGA2	MDGA2			161357			rs17118552-?	rs17118552	0	17118552	intron	0	0.014	2E-7	6.698970004336019	(CTJC , EA, RF+)	  17.19	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	16q12.1	16	48587491	ENSG00000102921	N4BP1			9683			rs6500395-?	rs6500395	0	6500395	intron	0	0.35	6E-7	6.221848749616355	(CSJC, RF+)	   2.20	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	2p16.3	2	51509856	Intergenic	LOC730100			730100			rs1406428-?	rs1406428	0	1406428	intron	0	0.28	2E-7	6.698970004336019	(CSJC , RF+)	   2.74	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	20q13.32	20	59602560	Intergenic	PHACTR3			116154			rs6026990-?	rs6026990	0	6026990	intron	0	0.086	6E-7	6.221848749616355	(CHAQ , EA, RF-)	    .63	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	1p32.1	1	60576203	Intergenic	PGBD4P8 - NFIA	100421185	4774		      478.23	      501.07	rs12565755-?	rs12565755	0	12565755	Intergenic	1	0.14	5E-8	7.30102999566398	(CHAQ, EA, RF-)	    .39	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	8q21.11	8	74461713	Intergenic	GDAP1 - MIR5681A	54332	100847058		       94.60	       86.83	rs16938910-?	rs16938910	0	16938910	Intergenic	1	0.011	4E-7	6.397940008672037	(CSJC , EA, RF+)	  28.66	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q25.1	15	78540881	PSMA4	PSMA4			5685			rs12901682-?	rs12901682	0	12901682	intron	0	0.017	4E-8	7.397940008672037	(CSJC , EA, RF-)	 135.02	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	4q21.1	4	75491177	RCHY1	RCHY1			25898			rs13137105-?	rs13137105	0	13137105	intron	0	0.38	9E-7	6.045757490560675	(CTJC, RF-)	   6.39	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	4q21.1	4	77215780	Intergenic	CCNG2 - FTLP9	901	100462780		       45.72	         .64	rs11937061-?	rs11937061	0	11937061	Intergenic	1	0.36	2E-7	6.698970004336019	(CTJC, RF-)	   6.70	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q26.1	15	91668544	Intergenic	SV2B - TRNAY16P	9899	100189496		      367.24	       42.53	rs7164176-?	rs7164176	0	7164176	Intergenic	1	0.43	5E-7	6.30102999566398	(CHAQ, RF-)	    .28	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	13q34	13	113919624	Intergenic	LINC00452			643365			rs9604529-?	rs9604529	0	9604529	missense	0	0.19	7E-7	6.154901959985743	(CHAQ, RF-)	    .35	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	8q23.3	8	115801679	Intergenic	TRPS1 - LINC00536	7227	100859921		      132.65	      148.83	rs800586-?	rs800586	0	800586	Intergenic	1	0.38	2E-7	6.698970004336019	(CTJC , EA, RF-)	   9.78	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	11q24.1	11	121373007	Intergenic	BMPR1APS2 - SORL1	100533800	6653		       10.09	       79.20	rs72991-?	rs72991	0	72991	Intergenic	1	0.25	5E-7	6.30102999566398	(CSJC, RF+)	   2.45	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	NR			Intergenic	 - 						SNP2-179127489-?	SNP2-179127489					0.017	4E-7		(CSJC, RF-)	  23.66	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	NR			Intergenic	 - 						SNP3-186373264-?	SNP3-186373264					0.1	2E-7		(CSJC, RF-)	   7.40	[NR] unit decrease	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	19q13.41	19	51581583	Intergenic	ZNF175			7728			rs1543922-?	rs1543922	0	1543922	intron	0	0.036	3E-7	6.522878745280337	(CSJC, EA, RF-)	  34.48	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q24.2	15	76254592	ETFA	ETFA			2108			rs1914816-?	rs1914816	0	1914816	intron	0	0.3	7E-7	6.154901959985743	(CDAS28, EA, RF-)	    .87	[NR] unit increase	Illumina [534,053]	N
06/19/2012	22491018	Wang J	04/10/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22491018	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	10q21.1	10	55089225	Intergenic	MIR548F1 - MTRNR2L5	100302192	100463289		      481.27	      509.77	rs16906916-?	rs16906916	0	16906916	Intergenic	1	0.03	8E-7	6.096910013008056	(CSJC, EA, RF+)	  14.00	[NR] unit increase	Illumina [534,053]	N
05/25/2012	22484627	Bradfield JP	04/08/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22484627	A genome-wide association meta-analysis identifies new childhood obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	4q25	4	112390634	ALPK1	ALPK1			80216			rs4833407-?	rs4833407	0	4833407	intron	0	NR	1E-6	5.999999999999999		   1.11	[1.065-1.160] 	Affymetrix & Illumina [2.7 million] (imputed)	N
05/25/2012	22484627	Bradfield JP	04/08/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22484627	A genome-wide association meta-analysis identifies new childhood obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	4q28.2	4	129810129	BC041448	ZSWIM5P3 - RNY5P4	391697	100380271		      670.39	       50.29	rs4864201-?	rs4864201	0	4864201	Intergenic	1	NR	2E-7	6.698970004336019		   1.12	[1.076-1.175] 	Affymetrix & Illumina [2.7 million] (imputed)	N
05/25/2012	22484627	Bradfield JP	04/08/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22484627	A genome-wide association meta-analysis identifies new childhood obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	13q14.3	13	53490846	OLFM4	ZNF646P1 - LINC00558	100419854	100861552		       80.97	      324.57	rs9568856-?	rs9568856	0	9568856	Intergenic	1	NR	2E-9	8.698970004336019		   1.22	[1.140-1.294] 	Affymetrix & Illumina [2.7 million] (imputed)	N
05/25/2012	22484627	Bradfield JP	04/08/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22484627	A genome-wide association meta-analysis identifies new childhood obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	17q21.32	17	48592068	HOXB5	HOXB3;HOXB5;HOXB-AS3			3213;3215;404266			rs9299-?	rs9299	0	9299	nearGene-5;UTR-3;intron	0	NR	4E-9	8.397940008672036		   1.14	[1.094-1.196] 	Affymetrix & Illumina [2.7 million] (imputed)	N
05/25/2012	22484627	Bradfield JP	04/08/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22484627	A genome-wide association meta-analysis identifies new childhood obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	18q12.3	18	41185695	KC6	RPL17P45 - KC6	100271414	641516		     1041.19	      294.58	rs17697518-?	rs17697518	0	17697518	Intergenic	1	NR	7E-7	6.154901959985743		   1.17	[1.098-1.241] 	Affymetrix & Illumina [2.7 million] (imputed)	N
07/16/2012	22482804	Ellinghaus D	04/06/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22482804	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	10q22.3	10	79273128	ZMIZ1	ZMIZ1			57178			rs1250544-G	rs1250544	0	1250544	intron	0	NR	7E-14	13.15490195998574	(same-effect analysis)	   1.16	[NR] 	Affymetrix, Illumina & Perlegen [1,116,213] (imputed)	N
07/16/2012	22482804	Ellinghaus D	04/06/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22482804	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	16p13.13	16	11254001	SOCS1	SOCS1			8651			rs4780355-T	rs4780355	0	4780355	nearGene-3	0	NR	1E-13	13	(same-effect analysis)	   1.16	[NR] 	Affymetrix, Illumina & Perlegen [1,116,213] (imputed)	N
07/16/2012	22482804	Ellinghaus D	04/06/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22482804	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	1p36.13	1	19392330	CAPZB	CAPZB			832			rs7667-?	rs7667	0	7667	intron	0	NR	8E-6	5.096910013008055	(opposite-effect analysis)	   1.11	[NR] 	Affymetrix, Illumina & Perlegen [1,116,213] (imputed)	N
07/16/2012	22482804	Ellinghaus D	04/06/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22482804	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	3q13.31	3	113962104	ZDHHC23	ZDHHC23			254887			rs1386478-A	rs1386478	0	1386478	ncRNA	0	NR	7E-6	5.154901959985742	(opposite-effect analysis)	   1.12	[NR] 	Affymetrix, Illumina & Perlegen [1,116,213] (imputed)	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	18p11.31	18	6567183	LOC100130480	C18orf64			100130480			rs948426-A	rs948426	0	948426	intron	0	0.602	1E-6	5.999999999999999		   1.14	[1.08-1.19] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	19p13.2	19	7223837	INSR	INSR;LOC100996405			3643;100996405			rs4804416-G	rs4804416	0	4804416	intron;nearGene-3	0	0.423	5E-6	5.301029995663981		   1.13	[1.07-1.18] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	9p22.3	9	14470835	TRNAH, GUG, ZDHHC21	TRNAH5 - CDCA4P1	100009607	100420502		       36.82	      122.74	rs10961534-G	rs10961534	0	10961534	Intergenic	1	0.116	7E-6	5.154901959985742		   1.19	[1.11-1.29] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	13q12.12	13	23468371	SACS, TNFRSF19	LINC00327			100506697			rs10162002-A	rs10162002	0	10162002	nearGene-5	0	0.149	5E-6	5.301029995663981		   1.23	[1.13-1.35] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	17q12	17	34137135	LOC100131744, CCL2	ASIC2			40			rs9901756-A	rs9901756	0	9901756	intron	0	0.893	7E-6	5.154901959985742		   1.21	[1.11-1.32] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	6p21.33	6	31050630	LOC729792, HCG22, C6orf15, HLA-C, HLA-B, DHFRP2, HCP5	TRNAI25			100189401			rs2517532-G	rs2517532	0	2517532		0	0.597	1E-8	8		   1.16	[1.10-1.22] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	22q12.3	22	37185382	C1QTNF6	C1QTNF6			114904			rs229526-C	rs229526	0	229526	missense	0	0.221	9E-6	5.045757490560675		   1.22	[1.12-1.32] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	1p34.3	1	37814315	MTF1	MTF1			4520			rs3748682-T	rs3748682	0	3748682	UTR-3	0	0.749	9E-6	5.045757490560675		   1.19	[1.10-1.28] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	5q13.3	5	77222617	PDE8B	PDE8B			8622			rs4704397-A	rs4704397	0	4704397	intron	0	0.391	2E-6	5.698970004336018		   1.17	[1.10-1.26] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	8q21.13	8	80526185	ZBTB10, RPSAP47	ZBTB10			65986			rs1051920-T	rs1051920	0	1051920	UTR-3	0	0.254	4E-6	5.397940008672037		   1.14	[1.08-1.21] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	7q21.13	7	88852128	C7orf62, ZNF804B	ZNF804B			219578			rs10248351-C	rs10248351	0	10248351	intron	0	0.007	7E-6	5.154901959985742		   1.84	[1.43-2.37] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	9q22.33	9	97784318	KRT18P13, FOXE1, C9orf156	KRT18P13 - FOXE1	392371	2304		       83.52	       68.94	rs925489-T	rs925489	0	925489	Intergenic	1	0.668	2E-19	18.69897000433602		   1.28	[1.22-1.35] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	1p13.3	1	107823394	VAV3	VAV3			10451			rs4915077-C	rs4915077	0	4915077	intron	0	0.084	8E-10	9.096910013008054		   1.30	[1.20-1.41] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	12q24.12	12	111446804	SH2B3, ATXN2, LOC100101246, BRAP, NAA25, C12orf51, PTPN11	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.502	3E-12	11.52287874528034		   1.20	[1.14-1.27] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	1p13.2	1	113761186	PHTF1, RSBN1, PTPN22	PHTF1			10745			rs6679677-A	rs6679677	0	6679677	nearGene-5	0	0.091	3E-13	12.52287874528034		   1.36	[1.25-1.48] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	4q31.23	4	148713873	ATP5LP4, LOC285423	ATP5LP4 - DCLK2	100130396	166614		       10.04	     1364.40	rs10519980-C	rs10519980	0	10519980	Intergenic	1	0.81	7E-6	5.154901959985742		   1.16	[1.09-1.23] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	1q31.1	1	187933850	LOC100129274	SLC4A1APP2 - RPS3AP9	100422527	100271129		      225.37	      760.44	rs655167-A	rs655167	0	655167	Intergenic	1	0.124	7E-6	5.154901959985742		   1.26	[1.14-1.39] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	2q33.2	2	203869764	CTLA4	CTLA4			1493			rs231779-T	rs231779	0	231779	intron	0	0.365	7E-6	5.154901959985742		   1.13	[1.07-1.19] 	Illumina [870,065]	N
05/25/2012	22493691	Eriksson N	04/06/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22493691	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NR	6p21.32	6	32695854	HLA-DRB9, HLA-DRB5, HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQA2	TRNAI25			100189401			rs3129720-C	rs3129720	0	3129720		0	0.764	5E-7	6.30102999566398		   1.16	(1.10-1.23) 	Illumina [870,065]	N
05/11/2012	22492993	Doumatey AP	04/05/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22492993	C-reactive protein (CRP) promoter polymorphisms influence circulating CRP levels in a genome-wide association study of African Americans.	C-reactive protein	837 African American individuals	486 West African ancestry individuals	1q23.2	1	159685728	CRPP1, CRP	OR10J6P - CRPP1	401973	171422		       86.50	       19.22	rs726640-?	rs726640	0	726640	Intergenic	1	NR	2E-13	12.69897000433602		    .44	[0.32-0.56] log mg/dl increase	Affymetrix [2,366,856] (imputed)	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	2p21	2	44927769	SIX3	CAMKMT - SIX3-AS1	79823	100506108		      155.18	       12.39	rs528301-?	rs528301	0	528301	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [805,814]	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	2p11.2			RGPD2	 - 						rs9636470-?	rs9636470					NR	3E-8			NR	NR	Illumina [805,814]	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	3p25.1	3	15253857	SH3BP5, NR2C2, ZFYVE20	SH3BP5;SH3BP5-AS1			9467;100505696			rs1318937-?	rs1318937	0	1318937	nearGene-3;nearGene-5	0	NR	4E-7	6.397940008672037		NR	NR	Illumina [805,814]	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	6p24.1	6	12048594	HIVEP1	HIVEP1			3096			rs1570989-?	rs1570989	0	1570989	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [805,814]	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	6q25.1	6	150841979	PLEKHG1	PLEKHG1			57480			rs17427389-?	rs17427389	0	17427389	UTR-3	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [805,814]	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	11q24.2	11	125300743	PKNOX2	PKNOX2			63876			rs1426153-?	rs1426153	0	1426153	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [805,814]	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	20q12	20	39216834	LOC339568	LOC339568			339568			rs6028335-?	rs6028335	0	6028335	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [805,814]	N
05/15/2012	22488850	Zuo L	04/04/2012	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22488850	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nictotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NR	7q31.31	7	120665095	KCND2	KCND2			3751			rs728115-?	rs728115	0	728115	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [805,814]	N
05/11/2012	22472876	Sullivan	04/03/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22472876	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	3q27.1	3	184158724	HTR3D,HTR3C,HTR3E,EIF2B5,DVL3,AP2M1,ABCF3,VWA5B2,MIR1224,ALG3,ECE2,CAMK2N2	DVL3			1857			rs1969253-?	rs1969253	0	1969253	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix, Illumina & Perlegen [~1.2 million](imputed)	N
05/11/2012	22472876	Sullivan	04/03/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22472876	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	4q35.2	4	187270152	Intergenic	MRPS36P2 - ADAM20P3	347706	644325		      369.31	      475.98	rs4478239-?	rs4478239	0	4478239	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix, Illumina & Perlegen [~1.2 million](imputed)	N
05/11/2012	22472876	Sullivan	04/03/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22472876	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	16q24.2	16	87428363	FBXO31,MAP1LC3B,ZCCHC14	ZCCHC14			23174			rs9646303-?	rs9646303	0	9646303	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix, Illumina & Perlegen [~1.2 million](imputed)	N
05/11/2012	22472876	Sullivan	04/03/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22472876	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	3q21.1	3	122610313	PARP9,DTX3L,PARP15	PARP15			165631			rs2173763-?	rs2173763	0	2173763	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix, Illumina & Perlegen [~1.2 million](imputed)	N
05/11/2012	22472876	Sullivan	04/03/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22472876	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	8q23.3	8	115621472	TRPS1	TRPS1			7227			rs2721937-?	rs2721937	0	2721937	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix, Illumina & Perlegen [~1.2 million](imputed)	N
05/16/2012	22472174	Xiao Y	04/03/2012	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22472174	SSBP2 variants are associated with survival in glioblastoma patients.	Glioblastoma	315 European ancestry cases	434 European ancestry cases	5q14.1	5	81423306	SSBP2	SSBP2			23635			rs7732320-T	rs7732320	0	7732320	intron	0	0.11	1E-6	5.999999999999999		   1.64	[1.34-2.00] 	Illumina [314,635]	N
05/23/2012	22466613	Sun L	04/01/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22466613	Multiple apical plasma membrane constituents are associated with susceptibility to meconium ileus in individuals with cystic fibrosis.	Cystic fibrosis (meconium ileus) 	3,763 European ancestry cases	2,372 European ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [7,245,292] (imputed)	N
04/28/2012	22479309	Boraska V	03/29/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22479309	Genome-wide association study to identify common variants associated with brachial circumference: a meta-analysis of 14 cohorts.	Brachial circumference	18,753 European ancestry individuals	3,623 European ancestry individuals	7q21.12	7	87067398	DMTF1, GRM3	KIAA1324L - DMTF1	222223	9988		        7.70	       84.96	rs1476587-G	rs1476587	0	1476587	Intergenic	1	0.141	7E-6	5.154901959985742		    .28	[0.16-0.41] unit increase	Affymetrix & Illumina [2,238,430] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	1p36.11	1	24299684	NR	IFNLR1 - GRHL3	163702	57822		      112.41	       19.64	rs10794657-G	rs10794657	0	10794657	Intergenic	1	NR	2E-7	6.698970004336019		    .03	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	1q41	1	219554437	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      353.74	       53.49	rs3001032-T	rs3001032	0	3001032	Intergenic	1	0.70	4E-8	7.397940008672037		    .02	[0.012-0.028] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	2q36.3	2	226257500	NR	NYAP2 - MIR5702	57624	100847053		      603.48	      401.21	rs1515110-T	rs1515110	0	1515110	Intergenic	1	NR	2E-7	6.698970004336019		    .02	[NR] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	3p21.1	3	52686064	GNL3	GNL3;PBRM1			26354;55193			rs1108842-C	rs1108842	0	1108842	intron;nearGene-5	0	0.50	1E-13	13		    .03	[0.022-0.038] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	3q25.1	3	150324831	TSC22D2	LINC01214			101928022			rs4301033-G	rs4301033	0	4301033	nearGene-5	0	NR	6E-7	6.221848749616355		    .04	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	3q27.3	3	186842993	ADIPOQ	ADIPOQ			9370			rs182052-G	rs182052	0	182052	intron	0	NR	5E-44	43.30102999566398		    .06	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	4q12	4	55601047	NR	NMU			10874			rs13434995-G	rs13434995	0	13434995	intron	0	NR	9E-6	5.045757490560675		    .02	[NR] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	5q11.2	5	54002195	ARL15	ARL15			54622			rs6450176-G	rs6450176	0	6450176	intron	0	NR	6E-8	7.221848749616355		    .03	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	6p24.3	6	9853686	NR	OFCC1			266553			rs4716055-T	rs4716055	0	4716055	intron	0	NR	4E-6	5.397940008672037		    .03	[NR] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	6p21.1	6	43790159	VEGFA	TRNAI25			100189401			rs998584-C	rs998584	0	998584		0	0.5	3E-8	7.522878745280337		    .03	[0.020-0.040] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	6q24.1	6	139514552	NR	CITED2 - ATP5F1P6	10370	645440		      139.90	       99.89	rs668459-T	rs668459	0	668459	Intergenic	1	NR	3E-6	5.522878745280337		    .02	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	8q24.13	8	125469233	TRIB1	TRIB1 - LINC00861	10221	100130231		       30.83	      453.29	rs2980879-T	rs2980879	0	2980879	Intergenic	1	0.70	7E-9	8.154901959985743		    .03	[0.020-0.040] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	10q25.3	10	114054633	NR	ADRB1 - UBE2V1P5	153	100287173		        7.73	       62.51	rs10885531-T	rs10885531	0	10885531	Intergenic	1	NR	4E-6	5.397940008672037		    .02	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	11p15.2	11	14762564	NR	PDE3B			5140			rs11023332-G	rs11023332	0	11023332	intron	0	NR	7E-6	5.154901959985742		    .02	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	12p12.2	12	20345102	PDE3A	TCP1P3 - PDE3A	400013	5139		      401.99	       22.99	rs7955516-C	rs7955516	0	7955516	Intergenic	1	0.40	4E-8	7.397940008672037		    .02	[0.012-0.028] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	12q13.3	12	56544599	NR	RBMS2			5939			rs2657888-T	rs2657888	0	2657888	intron	0	NR	8E-6	5.096910013008055		    .02	[NR] unit increase	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	12q24.31	12	123719285	ATP6V0A2, GPR109A, DNAH10	ATP6V0A2			23545			rs6488898-G	rs6488898	0	6488898	intron	0	NR	3E-10	9.522878745280336		    .05	[NR] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	15q26.1	15	93334196	NR	UNQ9370 - SEPHS1P2	400454	100420292		      126.15	       96.46	rs4777845-T	rs4777845	0	4777845	Intergenic	1	NR	9E-6	5.045757490560675		    .06	[NR] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	16q23.3	16	82629683	CDH13,CMIP	CDH13			1012			rs12051272-T	rs12051272	0	12051272	intron	0	NR	6E-48	47.22184874961635		    .26	[NR] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	17p13.1	17	7215003	NR	DLG4			1742			rs507506-G	rs507506	0	507506	intron	0	NR	2E-6	5.698970004336018		    .02	[NR] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	19q13.11	19	33408159	PEPD	PEPD			5184			rs731839-G	rs731839	0	731839	intron	0	0.35	8E-12	11.09691001300806		    .03	[0.022-0.038] unit decrease	Affymetrix & Illumina [NR](imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	1q41	1	219502700	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      302.00	      105.23	rs2791553-G	rs2791553	0	2791553	Intergenic	1	0.60	5E-7	6.30102999566398		    .02	[0.012-0.028] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	2q36.3	2	226314914	IRS1	NYAP2 - MIR5702	57624	100847053		      660.90	      343.80	rs925735-G	rs925735	0	925735	Intergenic	1	0.64	2E-8	7.698970004336018		    .02	[0.012-0.028] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	3p21.1	3	52588070	GNL3	PBRM1			55193			rs2590838-G	rs2590838	0	2590838	intron	0	0.51	2E-13	12.69897000433602		    .03	[0.022-0.038] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	3q27.3	3	186830776	ADIPOQ	RFC4 - ADIPOQ	5984	9370		       24.08	       11.90	rs6810075-T	rs6810075	0	6810075	Intergenic	1	0.93	2E-42	41.69897000433601		    .06	[0.052-0.068] unit increase	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	6q24.1	6	139519556	Intergenic	CITED2 - ATP5F1P6	10370	645440		      144.91	       94.89	rs592423-C	rs592423	0	592423	Intergenic	1	0.54	4E-7	6.397940008672037		    .02	[0.012-0.028] unit increase	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	8q24.13	8	125469233	TRIB1	TRIB1 - LINC00861	10221	100130231		       30.83	      453.29	rs2980879-T	rs2980879	0	2980879	Intergenic	1	0.69	1E-9	8.999999999999998		    .03	[0.022-0.038] unit increase	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	12q24.31	12	122690196	GPR109A	KNTC1 - HCAR2	9735	338442		       63.80	       11.10	rs601339-G	rs601339	0	601339	Intergenic	1	0.19	4E-6	5.397940008672037		    .03	[0.018-0.042] unit increase	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	16q23.2	16	81501185	CMIP	CMIP			80790			rs2925979-T	rs2925979	0	2925979	intron	0	0.30	3E-21	20.52287874528034		    .04	[0.032-0.048] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	16q23.3	16	82629683	CDH13	CDH13			1012			rs12051272-T	rs12051272	0	12051272	intron	0	0.03	1E-14	14		    .26	[0.20-0.32] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
05/10/2012	22479202	Dastani Z	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479202	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	19q13.11	19	33415217	PEPD	PEPD			5184			rs4805885-T	rs4805885	0	4805885	intron	0	0.39	2E-8	7.698970004336018		    .03	[0.020-0.040] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
05/24/2012	22479191	Pattaro C	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479191	Genome-wide association and functional follow-up reveals new loci for kidney function.	Chronic kidney disease	74,354  European ancestry individuals	56,246 European ancestry individuals	11p14.1	11	30738788	MPPED2	MPPED2 - DCDC5	744	100506627		      152.08	      124.82	rs3925584-?	rs3925584	0	3925584	Intergenic	1	NR	8E-18	17.09691001300806		    .01	[0.0057-0.0093] ml/min/1.73m^2 decrease	Affymetrix & Illumina [~2.5 million} (imputed)	N
05/24/2012	22479191	Pattaro C	03/29/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22479191	Genome-wide association and functional follow-up reveals new loci for kidney function.	Chronic kidney disease	74,354  European ancestry individuals	56,246 European ancestry individuals	2p24.3	2	15722878	DDX1	DDX1 - RNU5E-7P	1653	100873836		       91.77	      142.06	rs6431731-?	rs6431731	0	6431731	Intergenic	1	NR	4E-8	7.397940008672037		    .01	[0.0082-0.0172] ml/min/1.73m^2 decrease	Affymetrix & Illumina [~2.5 million} (imputed)	N
04/24/2012	22455414	Tekola Ayele F	03/29/2012	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/22455414	HLA class II locus and susceptibility to podoconiosis.	Podoconiosis	194 African ancestry cases, 203 African ancestry controls	202 African ancestry family trios	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [551,840]	N
05/04/2012	22479346	Yang HC	03/29/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22479346	Identification of IGF1, SLC4A4, WWOX, and SFMBT1 as hypertension susceptibility genes in Han Chinese with a genome-wide gene-based association study.	Hypertension	400 Han Chinese ancestry cases, 400 Han Chinese ancestry controls	315 Han Chinese ancestry individuals, 1,999 European ancestry cases, 3,004 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Ilumina [475,157]	N
04/28/2012	22456796	Imamura M	03/28/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22456796	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	8p11.21	8	41661944	ANK1	ANK1;MIR486			286;619554			rs515071-?	rs515071	0	515071	intron;nearGene-5	0	0.794	1E-8	8		   1.18	[1.12-1.25] 	NR [2,229,890] (imputed)	N
04/28/2012	22456796	Imamura M	03/28/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22456796	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	4p16.3	4	1260747	MGC21675	MAEA			10296			rs7656416-?	rs7656416	0	7656416	intron	0	0.675	1E-8	8		   1.15	[1.10-1.21] 	NR [2,229,890] (imputed)	N
04/28/2012	22456796	Imamura M	03/28/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22456796	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	9q31.3	9	109764009	PALM2, AKAP2	PALM2			114299			rs1327796-?	rs1327796	0	1327796	intron	0	0.235	3E-6	5.522878745280337		   1.13	[1.08-1.20] 	NR [2,229,890] (imputed)	N
04/28/2012	22456796	Imamura M	03/28/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22456796	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	9q22.2	9	90870958	SYK	SYK			6850			rs10993738-?	rs10993738	0	10993738	intron	0	0.152	5E-6	5.301029995663981		   1.16	[1.09-1.23] 	NR [2,229,890] (imputed)	N
05/02/2012	22470424	Kwee LC	03/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22470424	A high-density genome-wide association screen of sporadic ALS in US veterans.	Amyotrophic lateral sclerosis	Up to 639 European ancestry cases, 6,257 European ancestry controls	Up to 183 European ancestry cases, 961 European ancestry controls	4q21.3	4	86911448	LOC100506746	C4orf36			132989			rs3113494-?	rs3113494	0	3113494	nearGene-5	0	NR	9E-7	6.045757490560675	(outcome)	   1.43	[1.25-1.67] 	Affymetrix and Illumina [1,280,579]	N
05/02/2012	22470424	Kwee LC	03/28/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22470424	A high-density genome-wide association screen of sporadic ALS in US veterans.	Amyotrophic lateral sclerosis	Up to 639 European ancestry cases, 6,257 European ancestry controls	Up to 183 European ancestry cases, 961 European ancestry controls	11p15.4	11	4475616	OR52K1	OR52K3P			390035			rs2278170-?	rs2278170	0	2278170		0	NR	7E-6	5.154901959985742	(outcome)	   1.43	[1.25-1.67] 	Affymetrix and Illumina [1,280,579]	N
05/11/2012	22457343	Martinelli-Boneschi F	03/28/2012	Mult Scler	http://www.ncbi.nlm.nih.gov/pubmed/22457343	A genome-wide association study in progressive multiple sclerosis.	Multiple sclerosis	197 European ancestry cases, 234 European ancestry controls	379 European ancestry cases, 398 European ancestry controls	6p21.32	6	32368410	C6orf10	C6orf10			10665			rs3129934-T	rs3129934	0	3129934	intron	0	0.10	7E-16	15.15490195998574		   2.34	[1.90-2.87] 	Affymetrix [277,866]	N
04/28/2012	22452962	Kim HC	03/27/2012	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22452962	A genome-wide association study identifies a breast cancer risk variant in ERBB4 at 2q34: results from the Seoul Breast Cancer Study.	Breast cancer	2,273 Korean ancestry cases, 2,052 Korean ancestry controls	4,049 Korean ancestry cases, 3,845 Korean ancestry controls 	2q34	2	212432139	ERBB4	ERBB4			2066			rs13393577-T	rs13393577	0	13393577	intron	0	0.051	9E-14	13.04575749056067		   1.53	[1.37-1.70] 	Affymetrix [555,525]	N
04/24/2012	22479419	Liou YJ	03/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22479419	Genome-wide association study of treatment refractory schizophrenia in Han Chinese.	Schizophrenia (treatment refractory) 	522 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	273 Han Chinese ancestry cases	1q23.3	1	160660353	SLAMF1	SLAMF1 - SETP9	6504	100129738		       13.04	        9.80	rs11265461-C	rs11265461	0	11265461	Intergenic	1	0.41	2E-7	6.698970004336019		   1.45	[1.26-1.67] 	Affymetrix [694,436]	N
04/24/2012	22479419	Liou YJ	03/27/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22479419	Genome-wide association study of treatment refractory schizophrenia in Han Chinese.	Schizophrenia (treatment refractory) 	522 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	273 Han Chinese ancestry cases	4q24	4	102536261	NFKB1	NFKB1			4790			rs230529-T	rs230529	0	230529	intron	0	0.47	2E-7	6.698970004336019		   1.45	[1.26-1.66] 	Affymetrix [694,436]	N
04/25/2012	22446961	Lee YC	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446961	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Taiwanese Han Chinese ancestry cases, 1,107 Taiwanese Han Chinese ancestry controls	261 Taiwanese Han Chinese ancestry cases, 550 Taiwanese Han Chinese ancestry controls	3q23	3	139324394	COPB2	PISRT1 - MRPS22	140464	56945		       90.87	       19.60	rs4894410-G	rs4894410	0	4894410	Intergenic	1	0.021	8E-6	5.096910013008055		   2.09	[1.498-2.925] 	Affymetrix [716,935]	N
04/25/2012	22446961	Lee YC	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446961	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Taiwanese Han Chinese ancestry cases, 1,107 Taiwanese Han Chinese ancestry controls	261 Taiwanese Han Chinese ancestry cases, 550 Taiwanese Han Chinese ancestry controls	3q26.1	3	161059176	PPM1L	PPM1L			151742			rs9290065-G	rs9290065	0	9290065	intron	0	0.020	9E-6	5.045757490560675		   2.12	[1.508-2.979] 	Affymetrix [716,935]	N
04/25/2012	22446961	Lee YC	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446961	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Taiwanese Han Chinese ancestry cases, 1,107 Taiwanese Han Chinese ancestry controls	261 Taiwanese Han Chinese ancestry cases, 550 Taiwanese Han Chinese ancestry controls	4q13.1	4	64304697	SRD5A2L2	TECRL			253017			rs7656244-A	rs7656244	0	7656244	intron	0	0.270	3E-7	6.522878745280337		   1.39	[1.225-1.587] 	Affymetrix [716,935]	N
04/25/2012	22446961	Lee YC	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446961	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Taiwanese Han Chinese ancestry cases, 1,107 Taiwanese Han Chinese ancestry controls	261 Taiwanese Han Chinese ancestry cases, 550 Taiwanese Han Chinese ancestry controls	8p23.1	8	11486464	BLK	FAM167A - BLK	83648	640		       19.70	        7.55	rs2736340-T	rs2736340	0	2736340	Intergenic	1	0.722	9E-10	9.045757490560675		   1.54	[1.338-1.767] 	Affymetrix [716,935]	N
04/25/2012	22446961	Lee YC	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446961	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Taiwanese Han Chinese ancestry cases, 1,107 Taiwanese Han Chinese ancestry controls	261 Taiwanese Han Chinese ancestry cases, 550 Taiwanese Han Chinese ancestry controls	8q24.11	8	117537137	MED30	MED30			90390			rs17667932-G	rs17667932	0	17667932	intron	0	0.019	5E-7	6.30102999566398		   2.37	[1.680-3.337] 	Affymetrix [716,935]	N
04/25/2012	22446961	Lee YC	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446961	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Taiwanese Han Chinese ancestry cases, 1,107 Taiwanese Han Chinese ancestry controls	261 Taiwanese Han Chinese ancestry cases, 550 Taiwanese Han Chinese ancestry controls	20q13.12	20	46113425	CD40	RPL13P2 - CD40	128500	958		       13.23	        4.84	rs1569723-A	rs1569723	0	1569723	Intergenic	1	0.5480	6E-9	8.221848749616356		   1.42	[1.256-1.594] 	Affymetrix [716,935]	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	2p15	2	62225526	B3GNT2	MIR5192 - TMEM17	100847087	200728		       19.61	      235.37	rs11900673-T	rs11900673	0	11900673	Intergenic	1	0.28	1E-8	8		   1.11	[1.07-1.15] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	4q21.21	4	78592061	ANXA3	ANXA3			306			rs2867461-A	rs2867461	0	2867461	intron	0	0.44	1E-12	12		   1.13	[1.09-1.17] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	5q31.1	5	132094425	CSF2	CSF2 - P4HA2-AS1	1437	100861518		       18.26	       90.45	rs657075-A	rs657075	0	657075	Intergenic	1	0.36	3E-10	9.522878745280336		   1.12	[1.08-1.15] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	6p23	6	14096427	CD83	MRPL35P1 - CD83	359742	9308		      146.96	       20.83	rs12529514-C	rs12529514	0	12529514	Intergenic	1	0.14	2E-8	7.698970004336018		   1.14	[1.09-1.19] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	6p21.1	6	44265183	NFKBIE	NFKBIE			4794			rs2233434-G	rs2233434	0	2233434	missense	0	0.21	6E-19	18.22184874961635		   1.19	[1.15-1.24] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	10q21.2	10	62025330	ARID5B	ARID5B			84159			rs10821944-G	rs10821944	0	10821944	intron	0	0.36	6E-18	17.22184874961635		   1.16	[1.12-1.20] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	11q13.4	11	72662452	PDE2A, ARAP1	PDE2A			5138			rs3781913-T	rs3781913	0	3781913	intron	0	0.69	6E-10	9.221848749616356		   1.12	[1.08-1.16] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	14q32.33	14	104924668	PLD4	PLD4			122618			rs2841277-T	rs2841277	0	2841277	nearGene-5	0	0.69	2E-14	13.69897000433602		   1.15	[1.11-1.19] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	18p11.21	18	12797695	PTPN2	PTPN2			5771			rs2847297-G	rs2847297	0	2847297	intron	0	0.33	2E-8	7.698970004336018		   1.10	[1.07-1.14] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	11q24.3	11	128622844	ETS1, FLI1	MIR6090 - FLI1	102466104	2313		      100.40	       63.69	rs4937362-T	rs4937362	0	4937362	Intergenic	1	0.68	8E-7	6.096910013008056		   1.09	[1.06-1.13] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	14q22.2	14	54881400	GCH1	GCH1			2643			rs3783637-C	rs3783637	0	3783637	intron	0	0.74	2E-6	5.698970004336018		   1.10	[1.06-1.14] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	14q23.1	14	61441614	PRKCH	PRKCH			5583			rs1957895-G	rs1957895	0	1957895	intron	0	0.39	4E-7	6.397940008672037		   1.09	[1.05-1.13] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	15q26.1	15	90350436	ZNF774	GABARAPL3;ZNF774			23766;342132			rs6496667-A	rs6496667	0	6496667	nearGene-5;intron	0	0.35	1E-6	5.999999999999999		   1.09	[1.05-1.13] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	16p12.2	16	23877519	PRKCB1	PRKCB			5579			rs7404928-T	rs7404928	0	7404928	intron	0	0.62	4E-6	5.397940008672037		   1.08	[1.05-1.12] 	Affymetrix & Illumina [1,948,139] 	N
04/27/2012	22446963	Okada Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446963	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	16q24.1	16	85985027	IRF8	MIR6774 - LINC01082	102466732	100506542		       66.61	      211.15	rs2280381-T	rs2280381	0	2280381	Intergenic	1	0.84	2E-6	5.698970004336018		   1.12	[1.07-1.17] 	Affymetrix & Illumina [1,948,139] 	N
06/19/2012	22446962	Onouchi Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446962	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	8p23.1	8	11486171	FAM167A, BLK	FAM167A - BLK	83648	640		       19.40	        7.84	rs2254546-G	rs2254546	0	2254546	Intergenic	1	0.72	8E-21	20.09691001300805		   1.85	[1.54-2.23] 	Illumina [463,793]	N
06/19/2012	22446962	Onouchi Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446962	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	6p21.32	6	32795737	HLA-DQB2, HLA-DOB	TRNAI25			100189401			rs2857151-G	rs2857151	0	2857151		0	0.76	5E-11	10.30102999566398		   1.47	[1.23-1.77] 	Illumina [463,793]	N
06/19/2012	22446962	Onouchi Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446962	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	20q13.12	20	46134645	CD40	CD40 - CDH22	958	64405		        4.90	       39.09	rs4813003-C	rs4813003	0	4813003	Intergenic	1	0.67	5E-8	7.30102999566398		   1.41	[1.20-1.66] 	Illumina [463,793]	N
06/19/2012	22446962	Onouchi Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446962	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	4q35.1	4	184718015	MLF1IP	CENPU			79682			rs2130392-A	rs2130392	0	2130392	intron	0	0.358	3E-8	7.522878745280337		   1.42	[1.23-1.64] 	Illumina [463,793]	N
06/19/2012	22446962	Onouchi Y	03/25/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22446962	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	19q13.2	19	40775111	NUMBL,MIA	MIA;MIA-RAB4B			8190;100529262			rs2233152-A	rs2233152	0	2233152	nearGene-5;nearGene-5	0	0.158	4E-10	9.397940008672037		   1.52	[1.28-1.81] 	Illumina [463,793]	N
04/20/2012	22445761	Kurose K	03/23/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/22445761	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NR	14q21.3	14	47546779	MDGA2	MDGA2			161357			rs1160351-T	rs1160351	0	1160351	intron	0	0.381	3E-7	6.522878745280337		   2.92	[1.79-4.76] 	Affymetrix [186,320]	N
04/20/2012	22445761	Kurose K	03/23/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/22445761	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NR	14q12	14	30125451	RP11-269 C4.1	RPS6P24 - SYF2P1	100128358	317778		       69.46	      416.30	rs225848-G	rs225848	0	225848	Intergenic	1	0.028	1E-6	5.999999999999999		   4.42	[2.12-9.26] 	Affymetrix [186,320]	N
04/20/2012	22445761	Kurose K	03/23/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/22445761	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NR	5q23.3	5	129664693	ADAMTS19	ADAMTS19			171019			rs13436218-C	rs13436218	0	13436218	intron	0	0.012	1E-6	5.999999999999999		   5.92	[4.67-7.52] 	Affymetrix [186,320]	N
04/20/2012	22445761	Kurose K	03/23/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/22445761	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NR	19p13.2	19	7359642	AC119396.1	ARHGEF18			23370			rs6603109-A	rs6603109	0	6603109	intron	0	0.017	2E-6	5.698970004336018		   5.13	[2.22-11.76] 	Affymetrix [186,320]	N
04/20/2012	22445761	Kurose K	03/23/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/22445761	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NR	14q32.2	14	98203821	AL163760.3	C14orf64 - C14orf177	388011	283598		      225.70	      507.79	rs857228-T	rs857228	0	857228	Intergenic	1	0.354	3E-6	5.522878745280337		   2.56	[1.60-4.08] 	Affymetrix [186,320]	N
04/06/2012	22419738	Osman W	03/22/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22419738	A genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma.	Glaucoma (primary open-angle)	1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls	1,802 Japanese ancestry cases, 7,212 Japanese ancestry controls	9p21.3	9	22003368	CDKN2B	CDKN2B;CDKN2B-AS1			1030;100048912			rs1063192-T	rs1063192	0	1063192	UTR-3;intron	0	0.79	5E-11	10.30102999566398		   1.33	[1.22-1.43] 	Illumina [602,216]	N
04/06/2012	22419738	Osman W	03/22/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22419738	A genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma.	Glaucoma (primary open-angle)	1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls	1,802 Japanese ancestry cases, 7,212 Japanese ancestry controls	14q23.1	14	60606157	SIX1, SIX6	RPS15AP4 - SIX1	654371	6495		        3.61	       38.54	rs10483727-T	rs10483727	0	10483727	Intergenic	1	0.768	9E-8	7.045757490560674		   1.27	[1.18-1.37] 	Illumina [602,216]	N
04/06/2012	22419738	Osman W	03/22/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22419738	A genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma.	Glaucoma (primary open-angle)	1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls	1,802 Japanese ancestry cases, 7,212 Japanese ancestry controls	2q21.2	2	133605461	NCKAP5	NCKAP5			344148			rs7588567-G	rs7588567	0	7588567	intron	0	0.586	4E-7	6.397940008672037		   1.18	[1.10-1.25] 	Illumina [602,216]	N
04/18/2012	22437316	Sarig O	03/22/2012	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22437316	Population-specific association between a polymorphic variant in ST18, encoding a pro-apoptotic molecule, and pemphigus vulgaris.	Pemphigus vulgaris	100 Jewish cases, 397 Jewish controls	59 Jewish cases, 285 Jewish controls, 124 European ancestry cases, 275 European anestry controls, 126 North African ancestry controls, 246 North African ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [293,635]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	11q23.3	11	116778201	BUD13, ZNF259, APOA5, LOC100128347, SIK3	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.15	3E-12	11.52287874528034	(alpha-TOH)	    .07	[0.050-0.090] mg/L increase	Illumina [549,989]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	19p13.12	19	15879621	CYP4F2, LOC729645	CYP4F2			8529			rs2108622-T	rs2108622	0	2108622	missense	0	0.19	2E-7	6.698970004336019	(alpha-TOH)	    .04	[0.020-0.060] mg/L increase	Illumina [549,989]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	8q12.3	8	62971034	NKAIN3	NKAIN3			286183			rs7834588-T	rs7834588	0	7834588	intron	0	0.41	6E-7	6.221848749616355	(alpha-TOH)	    .03	[0.010-0.050] mg/L increase	Illumina [549,989]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	12p13.31	12	6829708	CD4,LEPREL2, GNB3	LEPREL2			10536			rs3741920-T	rs3741920	0	3741920	intron	0	0.16	4E-6	5.397940008672037	(alpha-TOH)	    .04	[0.020-0.060] mg/L decrease	Illumina [549,989]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	11q23.3	11	116778201	BUD13,ZNF259	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.15	4E-7	6.397940008672037	(change in alpha-TOH)	    .88	[0.55-1.21] unit increase	Illumina [549,989]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	11p13	11	35134185	CD44	MIR1343 - CD44	100616437	960		      192.27	        4.69	rs2785173-T	rs2785173	0	2785173	Intergenic	1	0.02	3E-6	5.522878745280337	(change in alpha-TOH)	   1.94	[1.12-2.76] unit increase	Illumina [549,989]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	7q34	7	140892427	BRAF	BRAF			673			rs17623382-G	rs17623382	0	17623382	intron	0	0.16	4E-6	5.397940008672037	(change in alpha-TOH)	    .78	[0.45-1.11] unit increase	Illumina [549,989]	N
06/18/2012	22437554	Major JM	03/21/2012	J Nutr	http://www.ncbi.nlm.nih.gov/pubmed/22437554	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NR	3p25.3	3	11033328	SLC6A1	SLC6A1			6529			rs2675163-C	rs2675163	0	2675163	intron	0	0.23	6E-6	5.221848749616356	(change in alpha-TOH)	    .68	[0.39-0.97] unit increase	Illumina [549,989]	N
04/18/2012	22430674	Lambert JC	03/20/2012	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22430674	Genome-wide haplotype association study identifies the FRMD4A gene as a risk locus for Alzheimer's disease.	Alzheimer's disease	2,025 European ancestry cases, 5,328 European ancestry controls	7,913 European ancestry cases, 10,417 European ancestry controls	10p13[rs7081208]; 10p13[rs2446581]			FRMD4A	 - 						3-SNP haplotype	rs7081208, rs2446581, rs17314229					0.028	1E-10			   1.68	[1.43-1.96]  (AAC)	Illumina [~7.7 million] (imputed)	N
04/17/2012	22426144	Long J	03/16/2012	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/22426144	Genome-wide association study identifies a possible susceptibility locus for endometrial cancer.	Endometrial cancer	832 Chinese ancestry cases, 2,682 Chinese ancestry controls	6,864 European ancestry cases, 12,936 European ancestry controls, 796 Chinese ancestry cases, 978 Chinese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [585,963]	N
04/18/2012	22446040	Wang KS	03/16/2012	Gene	http://www.ncbi.nlm.nih.gov/pubmed/22446040	A novel locus for body mass index on 5p15.2: a meta-analysis of two genome-wide association studies.	Body mass index	5,218 European ancestry individuals	762 European ancestry individuals	5p15.2	5	10463995	ROPN1L	ROPN1L;LOC101929379			83853;101929379			rs2967951-T	rs2967951	0	2967951	intron;missense	0	0.1	1E-6	5.999999999999999		    .81	[NR] unit increase	Illumina [up to 520,531]	N
04/18/2012	22446040	Wang KS	03/16/2012	Gene	http://www.ncbi.nlm.nih.gov/pubmed/22446040	A novel locus for body mass index on 5p15.2: a meta-analysis of two genome-wide association studies.	Body mass index	5,218 European ancestry individuals	762 European ancestry individuals	21q21.3	21	29728478	GRIK1	GRIK1			2897			rs933117-A	rs933117	0	933117	intron	0	0.08	6E-6	5.221848749616356		    .85	[NR] unit decrease	Illumina [up to 520,531]	N
04/18/2012	22446040	Wang KS	03/16/2012	Gene	http://www.ncbi.nlm.nih.gov/pubmed/22446040	A novel locus for body mass index on 5p15.2: a meta-analysis of two genome-wide association studies.	Body mass index	5,218 European ancestry individuals	762 European ancestry individuals	5p15.2	5	10372506	MARCH6	MARCH6			10299			rs2607292-T	rs2607292	0	2607292	intron	0	0.1	4E-6	5.397940008672037		    .77	[NR] unit increase	Illumina [up to 520,531]	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9q31.3	9	110538555	MUSK	SVEP1			79987			rs1889321	rs1889321	0	1889321	intron	0	NR	7E-7	6.154901959985743	(FEV1 decline in non-asthmatics)	    .15	[0.091-0.209] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10q21.1	10	54631543	Intergenic	PCDH15			65217			rs1937395-?	rs1937395	0	1937395	intron	0	NR	1E-6	5.999999999999999	(FEV1 decline in non-asthmatics)	    .16	[0.095-0.226] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	13q14.3	13	50519978	DLEU7	DLEU1			10301			rs9316500-?	rs9316500	0	9316500	intron	0	NR	5E-6	5.301029995663981	(FEV1 decline in non-asthmatics)	    .14	[0.077-0.193] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10q26.12	10	120961461	Intergenic	WDR11 - RPL19P16	55717	646255		       51.94	      171.56	rs4752485-?	rs4752485	0	4752485	Intergenic	1	NR	7E-6	5.154901959985742	(FEV1 decline in non-asthmatics)	    .15	[0.083-0.213] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2q33.3	2	206975608	Intergenic	CPO - KLF7	130749	8609		        6.13	       98.53	rs4675644-?	rs4675644	0	4675644	Intergenic	1	NR	9E-6	5.045757490560675	(FEV1 decline in non-asthmatics)	    .18	[0.10-0.26] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9p22.2	9	17487947	Intergenic	CNTLN			54875			rs2383024-?	rs2383024	0	2383024	intron	0	NR	9E-6	5.045757490560675	(FEV1 decline in asthmatics)	    .18	[0.10-0.26] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	5p15.2	5	11111659	Intergenic	CTNND2			1501			rs6884431-?	rs6884431	0	6884431	intron	0	NR	6E-6	5.221848749616356	(FEV1 decline in asthmatics)	    .18	[0.100-0.251] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p11.21	8	41757620	ANK1	ANK1			286			rs7006290-?	rs7006290	0	7006290	intron	0	NR	5E-6	5.301029995663981	(FEV1 decline in asthmatics)	    .18	[0.11-0.26] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	15q22.2	15	60872000	RORA	RORA;LOC102724802			6095;102724802			rs1902618-?	rs1902618	0	1902618	intron;intron	0	NR	2E-6	5.698970004336018	(FEV1 decline in asthmatics)	    .22	[0.13-0.31] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8q13.3	8	72324575	Intergenic	TRPA1 - RNA5SP271	8989	100873524		      248.99	       33.15	rs7006742-?	rs7006742	0	7006742	Intergenic	1	NR	1E-7	7	(FEV1 decline in asthmatics)	    .78	[0.49-1.06] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2p12	2	81629402	Intergenic	LRRTM1 - MTND4P25	347730	100873246		     1324.81	     1185.56	rs12615721-?	rs12615721	0	12615721	Intergenic	1	NR	8E-6	5.096910013008055	(FEV1 decline in asthmatics)	    .30	[0.17-0.44] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	14q31.3	14	85187675	FLRT2	RNU7-51P - RNU3P3	100151647	26843		     2139.04	       84.23	rs12436689-?	rs12436689	0	12436689	Intergenic	1	NR	7E-6	5.154901959985742	(FEV1 decline in asthmatics)	    .21	[0.12-0.30] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	4q22.1	4	88499935	HERC5	HERC5			51191			rs10516809-?	rs10516809	0	10516809	cds-synon	0	NR	9E-6	5.045757490560675	(FEV1 decline in asthmatics)	    .31	[0.17-0.44] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	1p22.2	1	90822573	Intergenic	BARHL2 - PHKA1P1	343472	646780		      105.34	       70.38	rs3843306-?	rs3843306	0	3843306	Intergenic	1	NR	5E-6	5.301029995663981	(FEV1 decline in asthmatics)	    .18	[0.10-0.25] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	1p21.2	1	99870421	Intergenic	AGL			178			rs17121403-?	rs17121403	0	17121403	missense	0	NR	7E-6	5.154901959985742	(FEV1 decline in asthmatics)	    .83	[0.47-1.20] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	7q32.3	7	132504930	PLXNA4B	PLXNA4			91584			rs10808265-?	rs10808265	0	10808265	intron	0	NR	2E-6	5.698970004336018	(FEV1 decline in asthmatics)	    .17	[0.10-0.25] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	1q32.1	1	205708998	Intergenic	SLC45A3 - NUCKS1	85414	64710		       28.50	        3.82	rs16856186-?	rs16856186	0	16856186	Intergenic	1	NR	9E-6	5.045757490560675	(FEV1 decline in asthmatics)	    .27	[0.15-0.39] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	20p11.23	20	19383335	SLC24A3	SLC24A3			57419			rs2424234-?	rs2424234	0	2424234	intron	0	NR	3E-6	5.522878745280337	(FEV1/FVC decline in non-asthmatics)	    .21	[0.12-0.3] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2p21	2	46105030	Intergenic	PRKCE			5581			rs12712969-?	rs12712969	0	12712969	intron	0	NR	7E-6	5.154901959985742	(FEV1/FVC decline in non-asthmatics)	    .15	[0.083-0.211] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	13q21.32	13	65782209	PCDH9	STARP1 - HNRNPA3P5	6771	387933		      471.05	        5.34	rs17077331-?	rs17077331	0	17077331	Intergenic	1	NR	4E-6	5.397940008672037	(FEV1/FVC decline in non-asthmatics)	    .50	[0.29-0.72] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10q22.1	10	71767290	Intergenic	CDH23;C10orf54			64072;64115			rs1867982-?	rs1867982	0	1867982	intron;intron	0	NR	6E-6	5.221848749616356	(FEV1/FVC decline in non-asthmatics)	    .20	[0.11-0.29] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	11q21	11	93433565	FLJ25393	CCDC67			159989			rs2658782-?	rs2658782	0	2658782	intron	0	NR	4E-6	5.397940008672037	(FEV1/FVC decline in non-asthmatics)	    .19	[0.11-0.27] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	7q21.3	7	93908983	Intergenic	GNGT1			2792			rs180273-?	rs180273	0	180273	intron	0	NR	7E-6	5.154901959985742	(FEV1/FVC decline in non-asthmatics)	    .15	[0.085-0.217] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2q37.1	2	233905414	Intergenic	MSL3P1 - TRPM8	151507	79054		       37.01	       11.98	rs10187654-?	rs10187654	0	10187654	Intergenic	1	NR	9E-6	5.045757490560675	(FEV1/FVC decline in non-asthmatics)	    .15	[0.084-0.217] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9p24.3	9	565917	Intergenic	KANK1			23189			rs7027930-?	rs7027930	0	7027930	intron	0	NR	9E-6	5.045757490560675	(FEV1/FVC decline in asthmatics)	    .20	[0.11-0.29] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p23.2	8	3737384	CSMD1	CSMD1			64478			rs2623702-?	rs2623702	0	2623702	intron	0	NR	9E-6	5.045757490560675	(FEV1/FVC decline in asthmatics)	    .32	[0.18-0.47] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2p25.3	2	4271386	Intergenic	DCDC2C - NPM1P48	728597	442006		      423.98	      242.93	rs11686135-?	rs11686135	0	11686135	Intergenic	1	NR	4E-6	5.397940008672037	(FEV1/FVC decline in asthmatics)	    .37	[0.21-0.53] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p22	8	15675076	TUSC3	TUSC3			7991			rs4831760-?	rs4831760	0	4831760	intron	0	NR	5E-8	7.30102999566398	(FEV1/FVC decline in asthmatics)	    .22	[0.14-0.3] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	22q11.23	22	23423078	Intergenic	ZDHHC8P1 - PCAT14	150244	101978785		       20.47	      115.02	rs4822410-?	rs4822410	0	4822410	Intergenic	1	NR	3E-6	5.522878745280337	(FEV1/FVC decline in asthmatics)	    .54	[0.32-0.77] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10p12.1	10	28328706	Intergenic	MIR8086 - ZNF101P1	102465880	100419867		       39.36	       10.57	rs1148186-?	rs1148186	0	1148186	Intergenic	1	NR	7E-6	5.154901959985742	(FEV1/FVC decline in asthmatics)	    .22	[0.12-0.32] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8p12	8	34666485	Intergenic	RPL10AP3 - RPL21P80	137107	100133273		      342.81	      207.64	rs6987004-?	rs6987004	0	6987004	Intergenic	1	NR	7E-6	5.154901959985742	(FEV1/FVC decline in asthmatics)	    .26	[0.15-0.37] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	21q22.3	21	42736659	Intergenic	PDE9A;LOC101928284			5152;101928284			rs9979235-?	rs9979235	0	9979235	intron;intron	0	NR	6E-6	5.221848749616356	(FEV1/FVC decline in asthmatics)	    .62	[0.35-0.88] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	20q13.32	20	58088218	Intergenic	MIR4532 - HSPD1P19	100616353	100463288		      192.77	        9.00	rs6070346-?	rs6070346	0	6070346	Intergenic	1	NR	4E-6	5.397940008672037	(FEV1/FVC decline in asthmatics)	    .17	[0.1-0.247] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	12q14.1	12	62217079	USP15	RPS3P6 - KLF17P1	645000	100133321		      194.90	       17.31	rs11615916-?	rs11615916	0	11615916	Intergenic	1	NR	7E-6	5.154901959985742	(FEV1/FVC decline in asthmatics)	    .24	[0.13-0.34] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	8q12.2	8	60963485	CHD7	NASPP1 - NPM1P6	282694	4875		       23.51	      238.77	rs10104895-?	rs10104895	0	10104895	Intergenic	1	NR	2E-6	5.698970004336018	(FEV1/FVC decline in asthmatics)	    .26	[0.16-0.37] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	14q23.2	14	63809094	SYNE2	RPS28P1			652980			rs7144584-?	rs7144584	0	7144584		0	NR	6E-7	6.221848749616355	(FEV1/FVC decline in asthmatics)	    .32	[0.19-0.44] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	17q24.3	17	72367254	SOX9	SOX9 - LINC00673	6662	100499467		      240.83	       36.07	rs12941150-?	rs12941150	0	12941150	Intergenic	1	NR	7E-6	5.154901959985742	(FEV1/FVC decline in asthmatics)	    .22	[0.13-0.32] unit increase	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	9q33.1	9	119496299	Intergenic	BRINP1 - MIR147A	1620	406939		      126.84	      748.68	rs10984561-?	rs10984561	0	10984561	Intergenic	1	NR	3E-6	5.522878745280337	(FEV1/FVC decline in asthmatics)	    .85	[0.49-1.2] unit decrease	Illumina [~2.5 million] (imputed)	N
04/27/2012	22424883	Imboden M	03/15/2012	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22424883	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	5q31.3	5	141320922	Intergenic	TAF7;LOC101926922			6879;101926922			rs10875595-?	rs10875595	0	10875595	nearGene-5;ncRNA	0	NR	1E-6	5.999999999999999	(FEV1/FVC decline in asthmatics)	    .25	[0.15-0.35] unit decrease	Illumina [~2.5 million] (imputed)	N
05/18/2012	22438815	Lill CM	03/15/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22438815	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 Other ancestry cases, 2,061 Other ancestry controls	Up to 98,080 individuals of European and Asian ancestry	4p16.3	4	970571	GAK, DGKQ	DGKQ			1609			rs11248060-?	rs11248060	0	11248060	intron	0	0.12	3E-12	11.52287874528034	(European)	   1.21	[1.15-1.27] 	Illumina and Perlegen [7,123,920] (imputed)	N
05/18/2012	22438815	Lill CM	03/15/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22438815	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 Other ancestry cases, 2,061 Other ancestry controls	Up to 98,080 individuals of European and Asian ancestry	17q21.31			MAPT, STH	 - 						H1H2-?	H1H2					0.80	8E-52		(European)	   1.28	[1.25-1.33] 	Illumina and Perlegen [7,123,920] (imputed)	N
05/18/2012	22438815	Lill CM	03/15/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22438815	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 Other ancestry cases, 2,061 Other ancestry controls	Up to 98,080 individuals of European and Asian ancestry	12q12	12	40227006	LRRK2	LRRK2			120892			rs1491942-?	rs1491942	0	1491942	intron	0	0.21	6E-15	14.22184874961635	(European)	   1.17	[1.13-1.22] 	Illumina and Perlegen [7,123,920] (imputed)	N
05/18/2012	22438815	Lill CM	03/15/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22438815	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 Other ancestry cases, 2,061 Other ancestry controls	Up to 98,080 individuals of European and Asian ancestry	4q22.1	4	89716450	SNCA	GPRIN3 - SNCA	285513	6622		      408.44	        7.65	rs356219-?	rs356219	0	356219	Intergenic	1	0.41	6E-65	64.22184874961636	(European)	   1.29	[1.25-1.33] 	Illumina and Perlegen [7,123,920] (imputed)	N
05/18/2012	22438815	Lill CM	03/15/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22438815	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 Other ancestry cases, 2,061 Other ancestry controls	Up to 98,080 individuals of European and Asian ancestry	4q22.1	4	89859751	SNCA	SNCA - MMRN1	6622	22915		       21.46	       35.11	rs6532194-?	rs6532194	0	6532194	Intergenic	1	0.40	5E-11	10.30102999566398	(Asian)	   1.29	[1.20-1.39] 	Illumina and Perlegen [7,123,920] (imputed)	N
05/18/2012	22438815	Lill CM	03/15/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22438815	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 Other ancestry cases, 2,061 Other ancestry controls	Up to 98,080 individuals of European and Asian ancestry	12q12	12	40363526	LRRK2	LRRK2			120892			rs34778348-?	rs34778348	0	34778348	missense	0	0.04	3E-21	20.52287874528034	(Asian)	   2.23	[1.89-2.63] 	Illumina and Perlegen [7,123,920] (imputed)	N
04/18/2012	22425255	Lopez LM	03/15/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22425255	A genome-wide search for genetic influences and biological pathways related to the brain's white matter integrity.	White matter integrity	535 European ancestry individuals	NA	16q23.1	16	77295744	ADAMTS18	ADAMTS18			170692			rs7192208-G	rs7192208	0	7192208	intron	0	0.11	2E-6	5.698970004336018		    .48	[0.29-0.68] unit decrease	Illumina [542,050]	N
04/18/2012	22425255	Lopez LM	03/15/2012	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22425255	A genome-wide search for genetic influences and biological pathways related to the brain's white matter integrity.	White matter integrity	535 European ancestry individuals	NA	1p33	1	47855549	LOC388630	TRABD2B			388630			rs946836-T	rs946836	0	946836	intron	0	0.33	5E-6	5.301029995663981		    .30	[0.17-0.43] unit increase	Illumina [542,050]	N
04/06/2012	22432041	Johnson MP	03/14/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22432041	Genome-wide association scan identifies a risk locus for preeclampsia on 2q14, near the inhibin, beta B gene.	Preeclampsia	538 European ancestry cases, 540 European ancestry  controls	1,894 European ancestry cases, 3,022 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [648,175]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	3p26.1	3	7496515	GRM7	GRM7			2917			rs1450100-?	rs1450100	0	1450100	intron	0	0.65	8E-6	5.096910013008055	(CL)	   1.54	[1.85-1.27] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	3p14.2	3	59995799	FHIT	FHIT			2272			rs212016-?	rs212016	0	212016	intron	0	0.69	7E-6	5.154901959985742	(CL)	   1.54	[1.89-1.27] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	19p13.11	19	18636795	Intergenic	KLHL26			55295			rs3764628-?	rs3764628	0	3764628	nearGene-5	0	0.12	4E-6	5.397940008672037	(CL)	   1.89	[2.5-1.43] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	1p31.1	1	69688758	LRRC7	LRRC7			57554			rs1417437-?	rs1417437	0	1417437	intron	0	0.65	9E-6	5.045757490560675	(CL_CLP)	   1.25	[1.37-1.14] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	11q14.1	11	77443594	NR	PAK1			5058			rs527589-?	rs527589	0	527589	intron	0	NR	3E-6	5.522878745280337	(CL_CLP)	   1.75	[1.37-2.22] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	13q12.12	13	24080089	SPATA13	SPATA13			221178			rs17079928-?	rs17079928	0	17079928	intron	0	0.82	6E-6	5.221848749616356	(CL_CLP)	   1.33	[1.52-1.18] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	1p31.1	1	69688758	LRRC7	LRRC7			57554			rs1417437-?	rs1417437	0	1417437	intron	0	0.64	4E-6	5.397940008672037	(CLP)	   1.30	[1.47-1.16] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	10p11.23	10	29888959	Intergenic	CKS1BP2 - KIAA1462	246714	57608		      190.31	      123.84	rs3006564-?	rs3006564	0	3006564	Intergenic	1	0.48	5E-6	5.301029995663981	(CLP)	   1.32	[1.47-1.16] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	10q26.2	10	128200108	Intergenic	MKI67 - LINC01163	4288	101927381		       73.90	       85.84	rs1329189-?	rs1329189	0	1329189	Intergenic	1	0.62	5E-6	5.301029995663981	(CLP)	   1.30	[1.47-1.16] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	2q37.2	2	235052249	SH3BP4	SH3BP4			23677			rs10174126-?	rs10174126	0	10174126	intron	0	0.43	7E-7	6.154901959985743	(CP)	   1.59	[1.32-1.92] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	5q14.1	5	81115402	RASGRF2	RASGRF2			5924			rs4703822-?	rs4703822	0	4703822	intron	0	0.72	4E-6	5.397940008672037	(CP)	   1.59	[1.3-1.92] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	10p14	10	7047054	NR	LINC00707 - SFMBT2	100507127	57713		      204.15	      111.57	rs10905099-?	rs10905099	0	10905099	Intergenic	1	NR	8E-6	5.096910013008055	(CP)	   3.45	[1.92-6.25] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	14q22.1	14	52522510	TXNDC16	TXNDC16			57544			rs745080-?	rs745080	0	745080	intron	0	0.55	8E-7	6.096910013008056	(CP)	   1.59	[1.32-1.92] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	14q32.12	14	92089711	ATXN3	ATXN3			4287			rs17807815-?	rs17807815	0	17807815	intron	0	0.07	6E-6	5.221848749616356	(CP)	   2.38	[1.59-3.57] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	17q12	17	36831827	Intergenic	MRM1 - LHX1	79922	3975		      222.86	      105.65	rs17138064-?	rs17138064	0	17138064	Intergenic	1	0.84	5E-7	6.30102999566398	(CP)	   1.92	[1.47-2.5] 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	6p24.3	6	7736510	BMP6	BMP6			654			rs2068361-?	rs2068361	0	2068361	intron	0	0.23	5E-6	5.301029995663981	(CL)	   1.64	[1.32-2.04 	Illumina [NR]	N
04/18/2012	22419666	Shi M	03/14/2012	Am J Med Genet A	http://www.ncbi.nlm.nih.gov/pubmed/22419666	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads and 87 other ancestry triads	NA	11q12.1	11	56672760	NR	OR2AH1P - OR9G1	81336	390174		        2.82	       27.63	rs11228719-?	rs11228719	0	11228719	Intergenic	1	NR	4E-6	5.397940008672037	(CP)	   1.64	[1.32-2.04] 	Illumina [NR]	N
04/06/2012	22417934	Athanasiu L	03/12/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/22417934	Genome-wide association study identifies genetic loci associated with body mass index and high density lipoprotein-cholesterol levels during psychopharmacological treatment - a cross-sectional naturalistic study.	Body mass index and cholesterol (psychopharmacological treatment)	283 European ancestry schizophrenia cases, 213 European ancestry bipolar disorder cases, 98 European ancestry psychosis cases	NR	8q21.3	8	88572819	MMP16	RNA5SP272 - RIPK2	100873525	8767		      176.27	     1184.91	rs7838490-?	rs7838490	0	7838490	Intergenic	1	NR	6E-8	7.221848749616355	(BMI)	NR	NR	Affymetrix [608,239]	N
04/06/2012	22417934	Athanasiu L	03/12/2012	Psychiatry Res	http://www.ncbi.nlm.nih.gov/pubmed/22417934	Genome-wide association study identifies genetic loci associated with body mass index and high density lipoprotein-cholesterol levels during psychopharmacological treatment - a cross-sectional naturalistic study.	Body mass index and cholesterol (psychopharmacological treatment)	283 European ancestry schizophrenia cases, 213 European ancestry bipolar disorder cases, 98 European ancestry psychosis cases	NR	12q21.1	12	73207352	Intergenic	LOC101928137			101928137			rs11615274-?	rs11615274	0	11615274	intron	0	NR	9E-8	7.045757490560674	(HDL-C)	NR	NR	Affymetrix [608,239]	N
04/03/2012	22428042	Nakano M	03/12/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22428042	Common variants in CDKN2B-AS1 associated with optic-nerve vulnerability of glaucoma identified by genome-wide association studies in Japanese.	Glaucoma (primary open-angle)	833 Japanese ancestry cases, 686 Japanese ancestry controls	411 Japanese ancestry cases, 289 Japanese ancestry controls	9p21.3	9	22031006	CDKN2B-AS1	CDKN2B-AS1			100048912			rs7865618-A	rs7865618	0	7865618	intron	0	0.82	9E-11	10.04575749056067		   1.78	[1.50-2.12] 	Affymetrix [653,519]	N
03/30/2012	22399142	Jongjaroenprasert W	03/08/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399142	A genome-wide association study identifies novel susceptibility genetic variation for thyrotoxic hypokalemic periodic paralysis.	Thyrotoxic hypokalemic periodic paralysis	78 Thai ancestry cases, 74 Thai ancestry controls	28 Thai ancestry cases, 48 Thai ancestry controls	17q24.3	17	70263305	KCNJ2	CALM2P1 - CASC17	100128390	101928165		       20.93	      834.47	rs623011-A	rs623011	0	623011	Intergenic	1	0.45	4E-12	11.39794000867204		   5.47	[3.04-9.83] 	Illumina [508,393]	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	1p31.3	1	67240275	IL23R, IL12RB2, C1orf141, SERBP1,SLC35D1	IL23R			149233			rs11209026-G	rs11209026	0	11209026	missense	0	0.921	1E-18	18		   2.20	[2.10-2.35] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	2q37.1	2	233274722	ATG16L1, SAG, DGKD, INPP5D, USP40	ATG16L1;SCARNA5			55054;677775			rs2241880-G	rs2241880	0	2241880	missense;nearGene-5	0	0.601	1E-12	12		   1.32	[1.24-1.41] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	2p15	2	62486398	TMEM17, EHBP1, CPAMD8, AK3	TMEM17			200728			rs6545946-C	rs6545946	0	6545946	intron	0	0.77	7E-9	8.154901959985743		   1.16	[1.06-1.27] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	5p13.1	5	40437846	PTGER4	LINC00603 - PTGER4	102467077	5734		      384.52	      242.08	rs9292777-T	rs9292777	0	9292777	Intergenic	1	0.597	2E-11	10.69897000433602		   1.37	[1.28-1.48] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	5q21.1	5	102611094	SLCO6A1	LINC00492			100861468			rs7705924-G	rs7705924	0	7705924	intron	0	0.066	2E-8	7.698970004336018		   1.48	[1.17-1.87] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	6p22.1	6	29755384	HLA-F, MOG, HLA-G, GABBR1, HLA-H, UBD, HLA-A	TRNAI25			100189401			rs9258260-T	rs9258260	0	9258260		0	0.104	2E-10	9.698970004336017		   1.45	[1.21-1.68] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	8q21.11	8	73095112	C8orf84, TERF1, RPL7, RDH10, KCNB2	SBSPON			157869			rs12677663-T	rs12677663	0	12677663	nearGene-5	0	0.659	2E-8	7.698970004336018		   1.15	[1.04-1.28] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	10q26.3	10	131373856	TCERG1L	TCERG1L - LINC01164	256536	399827		       62.14	      398.54	rs10734105-G	rs10734105	0	10734105	Intergenic	1	0.375	3E-8	7.522878745280337		   1.27	[1.10-1.43] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	10q21.2	10	62655424	ZNF365, ERG2, ADO	ZNF365			22891			rs7076156-G	rs7076156	0	7076156	missense	0	0.751	7E-9	8.154901959985743		   1.19	[1.10-1.30] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	10q24.2	10	99532633	NKX2-3, SLC25A28, GOT1, ENTPD7, CNNM1, COX15, CUTC	NKX2-3;LOC101927324			159296;101927324			rs11190141-C	rs11190141	0	11190141	nearGene-5;nearGene-5	0	0.739	5E-7	6.30102999566398		   1.34	[1.25-1.43] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	11q12.1	11	57435536	SLC43A3, PRG2, PRG3	SLC43A3 - RTN4RL2	29015	349667		        7.96	       25.00	rs11229030-C	rs11229030	0	11229030	Intergenic	1	0.305	8E-9	8.096910013008056		   1.15	[1.10-1.39] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	16q12.1	16	50722970	NOD2, CYLD, SNX20, NKD1	NOD2			64127			rs2076756-G	rs2076756	0	2076756	intron	0	0.246	1E-37	37		   1.66	[1.48-1.88] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	16q22.1	16	67937477	PSMB10	PSMB10			5699			rs11574514-A	rs11574514	0	11574514	nearGene-5	0	0.045	2E-7	6.698970004336019		   1.44	[1.35-1.52] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	17q12	17	34266955	CCL7, CCL2, CCL11, CCL8, CCL13, CCL1	CCL2 - CCL7	6347	6354		        9.75	        3.26	rs3091316-G	rs3091316	0	3091316	Intergenic	1	0.732	4E-8	7.397940008672037		   1.14	[1.03-1.27] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	2p16.1	2	60959694	PUS10, PEX13, REL, KIAA1841, C2orf74, PAPOLG, USP34	PUS10			150962			rs13003464-G	rs13003464	0	13003464	intron	0	0.487	5E-9	8.301029995663981		   1.05	[1.00-1.40] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	5q31.1	5	132067045	IL3, ACSL6, P4HA2, PDLIM4, SLC22A4	IL3 - CSF2	3562	1437		        3.84	        6.75	rs3091338-T	rs3091338	0	3091338	Intergenic	1	0.328	4E-8	7.397940008672037		   1.23	[1.08-1.42] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22412388	Kenny EE	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22412388	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	8q24.13	8	126080638	Intergenic	KNOP1P5 - RFPL4AP5	100130158	100420058		        6.39	       93.55	rs1906493-A	rs1906493	0	1906493	Intergenic	1	0.432	3E-6	5.522878745280337		   1.19	[1.09-1.28] 	Affyemtrix & Illumina [1,060,934] (imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	6p22.2	6	25533306	LRRC16A	LRRC16A			55604			rs12526480-T	rs12526480	0	12526480	intron	0	0.305	9E-9	8.045757490560675	(Platelet Count)	   4.39	[2.9-5.88] 10^9 L decrease	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	6p21.31	6	33572432	BAK1	BAK1			578			rs210134-G	rs210134	0	210134	nearGene-3	0	0.286	2E-15	14.69897000433602	(Platelet Count)	   6.16	[4.63-7.69] 10^9 L decrease	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	6q23.3	6	135111414	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      131.98	       69.90	rs9494145-T	rs9494145	0	9494145	Intergenic	1	0.73	3E-9	8.522878745280337	(Platelet Count)	   8.19	[5.49-10.89] 10^9 L increase	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	7q21.11	7	80606698	CD36	CD36			948			rs13236689-T	rs13236689	0	13236689	intron	0	0.436	3E-9	8.522878745280337	(Platelet Count)	   4.18	[2.81-5.55] 10^9 L increase	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	7q22.3	7	106731773	PIK3CG	CCDC71L - RNA5SP236	168455	100873494		       70.59	       49.83	rs342293-C	rs342293	0	342293	Intergenic	1	0.386	2E-8	7.698970004336018	(Platelet Count)	   4.05	[2.64-5.46] 10^L decrease	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	10q21.3	10	63344740	JMJD1C	JMJD1C			221037			rs7896518-A	rs7896518	0	7896518	intron	0	0.324	2E-12	11.69897000433602	(Platelet Count)	   5.18	[3.73-6.63] 10^9 L increase	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	11q13.1	11	64281440	BAD	BAD			572			rs477895-T	rs477895	0	477895	intron	0	0.453	5E-8	7.30102999566398	(Platelet Count)	   4.19	[2.68-5.7] 10^9 L decrease	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	12q24.12	12	111752634	ACAD10	ACAD10			80724			rs6490294-A	rs6490294	0	6490294	intron	0	0.337	5E-9	8.301029995663981	(Platelet Count)	   4.38	[2.91-5.85] 10^9 L decrease	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	19p13.12	19	16074749	TPM4	TPM4			7171			rs8109288-G	rs8109288	0	8109288	intron	0	0.097	5E-10	9.301029995663981	(Platelet Count)	   8.72	[5.98-11.46] 10^9 L decrease	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	20q13.32	20	59038947	SLMO2, TUBB1	SLMO2;SLMO2-ATP5E			51012;100533975			rs151361-A	rs151361	0	151361	intron;intron	0	0.257	9E-9	8.045757490560675	(Platelet Count)	   4.49	[2.96-6.02] 10^9 L increase	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	7q22.3	7	106732457	PIK3CG	CCDC71L - RNA5SP236	168455	100873494		       71.27	       49.14	rs342296-G	rs342296	0	342296	Intergenic	1	0.372	1E-11	11	(Mean Platelet Volume)	    .16	[0.12-0.2] fL increase	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	17q11.2	17	29348208	TAOK1	RPL35AP35 - MIR4523	100271636	100616122		        7.34	       42.45	rs11653144-T	rs11653144	0	11653144	Intergenic	1	0.442	4E-8	7.397940008672037	(Mean Platelet Volume)	    .13	[0.091-0.169] fL decrease	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22423221	Qayyum R	03/08/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22423221	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NR	19p13.12	19	16074749	TPM4	TPM4			7171			rs8109288-G	rs8109288	0	8109288	intron	0	0.084	3E-9	8.522878745280337	(Mean Platelet Volume)	    .26	[0.18-0.34] fL increase	Affymetrix & Illumina [~2.2 million](imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-G	rs560887	0	560887	intron	0	0.69	5E-26	25.30102999566398	(GLU)	    .15	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	7p21.2	7	15025359	TMEM195, DGKB	GTF3AP5 - AGMO	100128217	392636		       39.23	      174.96	rs6947830-A	rs6947830	0	6947830	Intergenic	1	0.46	1E-13	13	(GLU)	    .10	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	7p13	7	44191617	GCK	GCK - YKT6	2645	10652		        2.19	        9.35	rs3757840-A	rs3757840	0	3757840	Intergenic	1	0.46	4E-13	12.39794000867204	(GLU)	    .10	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	7p13	7	44220272	CAMK2B	CAMK2B			816			rs1127065-G	rs1127065	0	1127065	cds-synon	0	0.49	9E-11	10.04575749056067	(GLU)	    .08	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	11q14.3	11	92965261	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      466.30	        4.36	rs10830962-G	rs10830962	0	10830962	Intergenic	1	0.40	5E-16	15.30102999566398	(GLU)	    .12	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	1q42.13	1	230171436	GALNT2	GALNT2			2590			rs4846922-T	rs4846922	0	4846922	intron	0	0.39	4E-8	7.397940008672037	(HDL)	    .08	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	2p24.1	2	21014672	APOB	APOB			338			rs673548-G	rs673548	0	673548	intron	0	0.73	1E-10	10	(HDL)	    .11	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	6p21.33	6	31481199	HCG26, MICB	TRNAI25			100189401			rs3099844-A	rs3099844	0	3099844		0	0.08	2E-8	7.698970004336018	(HDL)	    .15	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	8p21.3	8	19956018	LPL	LPL			4023			rs268-G	rs268	0	268	missense	0	0.02	2E-12	11.69897000433602	(HDL)	    .38	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	9q31.1	9	104902020	ABCA1	ABCA1			19			rs1883025-T	rs1883025	0	1883025	intron	0	0.19	6E-10	9.221848749616356	(HDL)	    .10	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	11p11.2	11	47253513	NR1H3	NR1H3			10062			rs10838681-G	rs10838681	0	10838681	intron	0	0.64	1E-9	8.999999999999998	(HDL)	    .08	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-G	rs1532085	0	1532085	intron	0	0.57	5E-24	23.30102999566398	(HDL)	    .13	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	16q13	16	56956804	CETP	HERPUD1 - CETP	9709	1071		       12.92	        5.12	rs247617-C	rs247617	0	247617	Intergenic	1	0.72	9E-60	59.04575749056067	(HDL)	    .25	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	16q22.1	16	67877614	EDC4	EDC4			23644			rs8060686-T	rs8060686	0	8060686	cds-synon	0	0.81	2E-10	9.698970004336017	(HDL)	    .11	[NR] mmol/l decrease	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	2p16.1	2	55616277	SMEK2	SMEK2			57223			rs782590-T	rs782590	0	782590	intron	0	0.56	4E-8	7.397940008672037	(SBP)	    .09	[NR] mmHg increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	2p24.1	2	20923592	APOB	C2orf43 - APOB	60526	338		      100.46	       77.84	rs6711016-C	rs6711016	0	6711016	Intergenic	1	0.71	4E-8	7.397940008672037	(TG)	    .08	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-A	rs780094	0	780094	intron	0	0.36	6E-20	19.22184874961636	(TG)	    .13	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	7q11.23	7	73602675	MLXIPL	MLXIPL			51085			rs13226650-A	rs13226650	0	13226650	intron	0	0.83	2E-11	10.69897000433602	(TG)	    .12	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	8p21.3	8	19987865	LPL	LPL - RPL30P9	4023	100270981		       20.61	      125.47	rs7841189-C	rs7841189	0	7841189	Intergenic	1	0.90	1E-14	14	(TG)	    .18	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	11q23.3	11	116778201	ZNF259	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.15	3E-31	30.52287874528034	(TG)	    .23	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	19q13.32	19	44892962	TOMM40, APOE	TOMM40			10452			rs157582-T	rs157582	0	157582	intron	0	0.22	1E-8	8	(TG)	    .10	[NR] mmol/l increase	Illumina [1,257,079] (imputed)	N
04/03/2012	22399527	Kristiansson K	03/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22399527	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NR	16q12.2	16	53766842	FTO	FTO			79068			rs9940128-A	rs9940128	0	9940128	intron	0	0.42	2E-9	8.698970004336019	(Waist)	    .09	[NR] cm increase	Illumina [1,257,079] (imputed)	N
03/27/2012	22403646	Froguel P	03/05/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22403646	A genome-wide association study identifies rs2000999 as a strong genetic determinant of circulating haptoglobin levels.	Haptoglobin levels	631 European ancestry children	2,957 European ancestry family members, 1,434 European ancestry individuals	16q22.2	16	72074194	HP	HPR;TXNL4B			3250;54957			rs2000999-A	rs2000999	0	2000999	intron;intron	0	NR	8E-59	58.09691001300805		    .14	[0.12-0.15] g/L decrease (SFS family cohort)	Illumina [318,237]	N
03/27/2012	22391508	Jiang R	03/05/2012	Environ Health Perspect	http://www.ncbi.nlm.nih.gov/pubmed/22391508	Single-nucleotide polymorphisms associated with skin naphthyl-keratin adduct levels in workers exposed to naphthalene.	Naphthyl-keratin adduct levels 	100 individuals of European, Hispanic, African American and Asian ancestries 	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [184,153]	N
03/20/2012	22387998	Tanikawa C	03/04/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22387998	A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population.	Duodenal ulcer 	1,043 Japanese ancestry cases, 21,694 Japanese ancestry controls	5,992 Japanese ancestry cases, 3,629 Japanese ancestry controls	8q24.3	8	142680513	PSCA	PSCA			8000			rs2294008-C	rs2294008	0	2294008	intron	0	0.37	2E-33	32.69897000433601	(Additive)	   1.41	[NR] 	Illumina [480,327]	N
03/20/2012	22387998	Tanikawa C	03/04/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22387998	A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population.	Duodenal ulcer 	1,043 Japanese ancestry cases, 21,694 Japanese ancestry controls	5,992 Japanese ancestry cases, 3,629 Japanese ancestry controls	9q34.2	9	133273813	ABO	ABO			28			rs505922-T	rs505922	0	505922	intron	0	0.54	1E-10	10	(Recessive)	   1.32	[NR] 	Illumina [480,327]	N
06/18/2012	22613542	Chen XD	03/01/2012	Chin Med J (Engl)	http://www.ncbi.nlm.nih.gov/pubmed/22613542	ANKRD7 and CYTL1 are novel risk genes for alcohol drinking behavior.	Drinking behavior	904 European ancestry individuals	1,972 European ancestry individuals from 593 families, 761 European ancestry unrelated individuals, 2,955 Han Chinese ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [379,319]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	3p14.2	3	60137795	FHIT	FHIT			2272			rs10510829-?	rs10510829	0	10510829	intron	0	NR	7E-7	6.154901959985743	(LTG)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	12q12	12	43536193	ADAMTS20	ADAMTS20			80070			rs275380-?	rs275380	0	275380	intron	0	NR	1E-6	5.999999999999999	(LTG)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	8q13.2	8	67887142	RP11-396J6.2	CPA6 - PREX2	57094	80243		      140.76	       65.23	rs6990917-?	rs6990917	0	6990917	Intergenic	1	NR	2E-6	5.698970004336018	(LTG)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	8q21.3	8	86012784	ATP6V0D2	REXO1L6P - RPL36AP31	441362	642320		      184.84	        3.97	rs285406-?	rs285406	0	285406	Intergenic	1	NR	5E-6	5.301029995663981	(LTG)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	14q24.3	14	77031632	IRF2BPL	IRF2BPL - CIPC	64207	85457		        2.93	       66.60	rs183266-?	rs183266	0	183266	Intergenic	1	NR	5E-6	5.301029995663981	(LTG)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	12p13.33	12	1747787	ADIPOR2	ADIPOR2			79602			rs12230440-?	rs12230440	0	12230440	intron	0	NR	3E-6	5.522878745280337	(PHT)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	18q11.2	18	25151396	ZNF521	ZNF521			25925			rs8083432-?	rs8083432	0	8083432	intron	0	NR	6E-6	5.221848749616356	(PHT)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	7q22.3	7	107021638	PRKAR2B	PIK3CG - PRKAR2B	5294	5577		      112.66	       23.10	rs7798500-?	rs7798500	0	7798500	Intergenic	1	NR	6E-6	5.221848749616356	(PHT)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	4q21.1	4	76850192	RP11-123J14.1	SUMO2P11 - RPL26P17	100422250	100128318		      181.40	       35.85	rs17002253-?	rs17002253	0	17002253	Intergenic	1	NR	7E-6	5.154901959985742	(PHT)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	5q34	5	166891185	CTB-7E3.1	RPLP0P9 - CTB-7E3.1	441114	102557615		      508.50	       14.04	rs3853240-?	rs3853240	0	3853240	Intergenic	1	NR	1E-6	5.999999999999999	(Total LTG and PHT)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	13q21.33	13	71600221	DACH1	DACH1			1602			rs9919839-?	rs9919839	0	9919839	intron	0	NR	2E-6	5.698970004336018	(Total LTG and PHT)	NR	NR	Illumina [NR]	N
04/03/2012	22379998	McCormack M	03/01/2012	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/22379998	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NR	11p15.1	11	21037185	NELL1	NELL1			4745			rs4569005-?	rs4569005	0	4569005	intron	0	NR	5E-6	5.301029995663981	(Total LTG and PHT)	NR	NR	Illumina [NR]	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	1q22	1	155135691	GBA	SLC50A1			55974			rs12726330-?	rs12726330	0	12726330	intron	0	NR	5E-8	7.30102999566398		   1.71	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	2q21.3	2	134782397	Intergenic	TMEM163 - ACMSD	81615	130013		       63.40	       56.03	rs6430538-?	rs6430538	0	6430538	Intergenic	1	NR	2E-7	6.698970004336019		   1.15	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	2q24.3	2	168286525	Intergenic	PHF5GP - CERS6	450234	253782		       54.30	      169.72	rs9917256-?	rs9917256	0	9917256	Intergenic	1	NR	3E-6	5.522878745280337		   1.19	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	4p16.3	4	970571	DGKQ	DGKQ			1609			rs11248060-?	rs11248060	0	11248060	intron	0	NR	3E-9	8.522878745280337		   1.26	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	4p15.32	4	15735725	BST1	BST1			683			rs4698412-?	rs4698412	0	4698412	intron	0	NR	3E-7	6.522878745280337		   1.14	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	4q22.1	4	89720189	SNCA	GPRIN3 - SNCA	285513	6622		      412.18	        3.91	rs356220-?	rs356220	0	356220	Intergenic	1	NR	8E-35	34.09691001300806		   1.38	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6q25.2	6	154405854	CNKSR3	CNKSR3			154043			rs2275336-?	rs2275336	0	2275336	UTR-3	0	NR	9E-7	6.045757490560675		   1.36	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	6p21.32	6	32420032	LOC642072	TRNAI25			100189401			rs2395163-?	rs2395163	0	2395163		0	NR	3E-11	10.52287874528034		   1.24	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	8p23.1	8	11841238	Intergenic	FDFT1 - CTSB	2222	1508		        1.93	        1.29	rs1296028-?	rs1296028	0	1296028	Intergenic	1	NR	1E-6	5.999999999999999		   1.15	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	9p22.2	9	17731923	SH3GL2	SH3GL2			6456			rs1536076-?	rs1536076	0	1536076	intron	0	NR	5E-7	6.30102999566398		   1.16	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	11p14.3	11	22092547	Intergenic	LOC102723370			102723370			rs11026412-?	rs11026412	0	11026412	intron	0	NR	3E-6	5.522878745280337		   1.16	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	12q12	12	39959194	SLC2A13	SLC2A13			114134			rs10877840-?	rs10877840	0	10877840	intron	0	NR	1E-6	5.999999999999999		   1.15	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	15q22.2	15	61708933	Intergenic	RNA5SP397 - VPS13C	100873650	54832		      972.05	      143.46	rs10519131-?	rs10519131	0	10519131	Intergenic	1	NR	1E-6	5.999999999999999		   1.22	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	16p11.2	16	31083850	POL3S	ZNF646;PRSS53			9726;339105			rs11865038-?	rs11865038	0	11865038	intron;intron	0	NR	4E-7	6.397940008672037		   1.14	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	17q21.31	17	46779275	WNT3	WNT3			7473			rs199515-?	rs199515	0	199515	intron	0	NR	3E-17	16.52287874528034		   1.32	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	18q12.3	18	43093415	RIT2	RIT2			6014			rs12456492-?	rs12456492	0	12456492	intron	0	NR	2E-10	9.698970004336017		   1.19	[NR] 	Illumina [2.5 million] (imputed)	N
04/20/2012	22451204	Pankratz N	03/01/2012	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22451204	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	21q22.3	21	41866243	PRDM15	PRDM15			63977			rs2839398-?	rs2839398	0	2839398	intron	0	NR	5E-6	5.301029995663981		   1.23	[NR] 	Illumina [2.5 million] (imputed)	N
03/20/2012	22396660	Urabe Y	03/01/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22396660	A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1.	Nephrolithiasis	904 Japanese ancestry cases, 7,471 Japanese ancestry controls	4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls	5q35.3	5	177371305	RGS14, SLC34A1,PFN3, F12	RGS14			10636			rs11746443-?	rs11746443	0	11746443	intron	0	NR	9E-12	11.04575749056067		   1.19	[1.13-1.24] 	Illumina [556,249]	N
03/20/2012	22396660	Urabe Y	03/01/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22396660	A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1.	Nephrolithiasis	904 Japanese ancestry cases, 7,471 Japanese ancestry controls	4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls	7p14.3	7	30897563	INMT, FAM188B, AQP1	OSBPL9P6 - AQP1	100533673	358		        6.72	       14.24	rs1000597-?	rs1000597	0	1000597	Intergenic	1	NR	2E-14	13.69897000433602		   1.22	[1.16-1.29] 	Illumina [556,249]	N
03/20/2012	22396660	Urabe Y	03/01/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22396660	A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1.	Nephrolithiasis	904 Japanese ancestry cases, 7,471 Japanese ancestry controls	4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls	13q14.11	13	42180386	DGKH	DGKH			160851			rs4142110-?	rs4142110	0	4142110	intron	0	NR	5E-9	8.301029995663981		   1.14	[1.09-1.19] 	Illumina [556,249]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	10q21.2	10	62463624	ZNF365	ZNF365			22891			rs10995170-?	rs10995170	0	10995170	intron	0	NR	3E-7	6.522878745280337	(High intelligence)	   4.42	[2.77-6.07] unit increase	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	7q21.3	7	94380322	COL1A2	LOC101927525			101927525			rs7792596-?	rs7792596	0	7792596	intron	0	NR	6E-7	6.221848749616355	(High intelligence)	   4.13	[2.52-5.74] unit increase	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	3p26.2	3	2854000	CNTN4	CNTN4			152330			rs11713158-?	rs11713158	0	11713158	intron	0	NR	9E-7	6.045757490560675	(High intelligence)	   5.04	[3.06-7.02] unit increase	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	2q14.3	2	126573377	GYPC	YWHAZP2 - GYPC	150554	2995		       15.20	       82.48	rs1550404-?	rs1550404	0	1550404	Intergenic	1	NR	1E-6	5.999999999999999	(high intelligence)	   7.05	[4.23-9.87] unit increase	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	19q13.33	19	48024325	ELSPBP1	ELSPBP1			64100			rs3936340-?	rs3936340	0	3936340	intron	0	NR	2E-6	5.698970004336018	(High intelligence)	   6.80	[4.06-9.54] unit increase	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	18q23	18	75480491	C18orf62	SMIM21 - ZNF516	284274	9658		       52.86	      877.19	rs1865721-?	rs1865721	0	1865721	Intergenic	1	NR	5E-6	5.301029995663981	(High intelligence)	   3.90	[2.25-5.55] unit increase	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	1p13.3	1	106921021	PRMT6	NDE1P1 - PRMT6	100422372	55170		      102.68	      135.62	rs12125971-?	rs12125971	0	12125971	Intergenic	1	NR	7E-6	5.154901959985742	(High intelligence)	   6.93	[3.99-9.87] unit increase	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	22q12.3	22	31833663	DEPDC5	DEPDC5			9681			rs5994434-?	rs5994434	0	5994434	intron	0	NR	5E-7	6.30102999566398	(Average Intelligence)	   6.29	[3.88-8.70] unit decrease	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	8p22	8	15808103	TUSC3	PPM1AP1 - RPL32P19	137012	646433		         .80	      134.97	rs240657-?	rs240657	0	240657	Intergenic	1	NR	2E-6	5.698970004336018	(Average Intelligence)	   5.22	[3.10-7.34] unit decrease	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	20p12.1[rs6043979]; 20p12.1[rs932541]			KIF16B	 - 						4-SNP haplotype	rs6043979, rs932541, rs6044001, rs6044003					NR	1E-8		(Synaptic signaling, transport)	NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	9p13.2[rs3758171]; 9p13.2[rs1329573]			PAX5	 - 						4-SNP haplotype	rs3758171, rs1329573, rs3824344, rs7020413					NR	4E-8		(Neurodevelopment)	NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	19q13.33[rs3815908]; 19q13.33[rs2303690]			ELSPBP1	 - 						4-SNP haplotype	rs3815908, rs2303690, rs3936340, rs2560966					NR	3E-8			NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	2q33.1[rs2540051]; 2q33.1[rs7563911]			AOX1	 - 						4-SNP haplotype	rs2540051, rs7563911, rs7589014, rs2348114					NR	6E-8		(Amyotrophic Lateral Sclerosis)	NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	22q12.2[rs11703808]; 22q12.2[rs761746]			PISD	 - 						4-SNP haplotype	rs11703808, rs761746, rs12627933, rs9621305					NR	7E-8			NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	9q34.2[rs34312136]; 9q34.2[rs35079168]			RXRA	 - 						4-SNP haplotype	rs34312136, rs35079168, rs4501664, rs11102986					NR	8E-8		(Schizophrenia, Cognitive ability)	NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	1p35.1[rs16835742]; 1p35.1[rs7533254]			CSMD2	 - 						4-SNP haplotype	rs16835742, rs7533254, rs528059, rs544991					NR	8E-8		(Brain structure)	NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	11p14.3[rs10834449]; 11p14.3[rs2716458]			LUZP2	 - 						4-SNP haplotype	rs10834449, rs2716458, rs12798374, rs1021261					NR	8E-8		(Prader-Willi syndrome; verbal memory)	NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	7q21.3[rs10262915]; 7q21.3[rs6465411]			COL1A2	 - 						4-SNP haplotype	rs10262915, rs6465411, rs13221576, rs4729127					NR	9E-8			NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	10p15.1[rs1987511]; 10p15.1[rs7475343]			UCN3	 - 						4-SNP haplotype	rs1987511, rs7475343, rs9423406, rs7896729					NR	9E-8		(Depression; med response/addiction)	NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	4q28.3[rs1908039]; 4q28.3[rs11099040]			CYCSP14	 - 						4-SNP haplotype	rs1908039, rs11099040, rs13113376, rs1908038					NR	9E-8			NR	NR	Illumina [795,637]	N
04/25/2012	22449649	Loo SK	02/28/2012	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22449649	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 individuals of European ancestry from ADHD families	NR	3p26.2[rs6781149]; 3p26.2[rs17584516]			CNTN4	 - 						4-SNP haplotype	rs6781149, rs17584516, rs4629318, rs11713158					NR	1E-7		(Cell adhesion; neurodevelopment)	NR	NR	Illumina [795,637]	N
03/30/2012	22377092	Wang KS	02/27/2012	Drug Alcohol Depend	http://www.ncbi.nlm.nih.gov/pubmed/22377092	ANAPC1 and SLCO3A1 are associated with nicotine dependence: meta-analysis of genome-wide association studies.	Nicotine dependence	1,079 European ancestry cases, 1,341 European ancestry controls	1,419 European ancestry cases, 1,885 European ancestry controls from 778 nuclear families	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [818,866]	N
04/06/2012	22367438	Tao S	02/26/2012	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22367438	Genome-wide two-locus epistasis scans in prostate cancer using two European populations.	Prostate cancer	1,176 cases, 1,101 controls	1,964 European ancestry cases, 3,172 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [509,916]	N
03/17/2012	22368281	Deshmukh HA	02/24/2012	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/22368281	Genome-wide association study of genetic determinants of LDL-c response to atorvastatin therapy: importance of Lp(a).	Response to statin therapy	2,702 European ancestry individuals	2,550 European ancestry individuals	6q26	6	160589086	LPA	LPA			4018			rs10455872-A	rs10455872	0	10455872	intron	0	NR	1E-9	8.999999999999998		    .28	[0.20-0.36] mmol/L decrease	Perlgen & Illumina [NR] (imputed)	N
03/20/2012	22384028	Guo Y	02/24/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22384028	A genome-wide linkage and association scan reveals novel loci for hypertension and blood pressure traits.	Hypertension	315 Hong Kong Chinese ancestry individuals from 111 families	NA	5q31.1	5	133686160	FSTL4	MIR1289-2 - C5orf15	100302134	56951		      258.45	      269.35	rs6596140-T	rs6596140	0	6596140	Intergenic	1	0.34	9E-8	7.045757490560674		NR	NR	Illumina [503,984]	N
03/20/2012	22384028	Guo Y	02/24/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22384028	A genome-wide linkage and association scan reveals novel loci for hypertension and blood pressure traits.	Hypertension	315 Hong Kong Chinese ancestry individuals from 111 families	NA	4q22.3	4	94935530	NR	BMPR1B			658			rs10021303-A	rs10021303	0	10021303	intron	0	0.31	7E-6	5.154901959985742		NR	NR	Illumina [503,984]	N
03/20/2012	22384028	Guo Y	02/24/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22384028	A genome-wide linkage and association scan reveals novel loci for hypertension and blood pressure traits.	Hypertension	315 Hong Kong Chinese ancestry individuals from 111 families	NA	9p13.1	9	38456368	NR	ARMC8P1 - TCEA1P3	100130871	340501		        2.00	       22.11	rs1110183-G	rs1110183	0	1110183	Intergenic	1	0.46	8E-6	5.096910013008055		NR	NR	Illumina [503,984]	N
03/17/2012	22367966	Lin X	02/24/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22367966	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	5q32	5	145659268	Intergenic	ASS1P10 - PRELID2	455	153768		      428.98	       97.08	rs10515552-?	rs10515552	0	10515552	Intergenic	1	NR	4E-8	7.397940008672037		  43.93	[28.29-59.57] pg/ml increase	Illumina [1,940,245] (imputed)	N
03/17/2012	22367966	Lin X	02/24/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22367966	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	9p21.1	9	32914591	Intergenic	TMEM215 - ASS1P12	401498	392302		      125.39	       31.30	rs12377462-?	rs12377462	0	12377462	Intergenic	1	NR	2E-6	5.698970004336018		  28.53	[16.79-40.27] pg/ml increase	Illumina [1,940,245] (imputed)	N
03/17/2012	22367966	Lin X	02/24/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22367966	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	11q12.1	11	60069719	MS4A3	MS4A3			932			rs2298585-?	rs2298585	0	2298585	intron	0	NR	3E-15	14.52287874528034		  71.80	[54.08-89.52] pg/ml increase	Illumina [1,940,245] (imputed)	N
03/17/2012	22367966	Lin X	02/24/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22367966	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	13q32.3	13	99866380	CLYBL	CLYBL;LOC101927437			171425;101927437			rs41281112-?	rs41281112	0	41281112	STOP-GAIN;intron	0	NR	9E-10	9.045757490560675		  83.60	[56.90-110.30] pg/ml decrease	Illumina [1,940,245] (imputed)	N
03/17/2012	22367966	Lin X	02/24/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22367966	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	19p13.3	19	5839735	FUT6	FUT6			2528			rs3760776-?	rs3760776	0	3760776	nearGene-5	0	NR	4E-13	12.39794000867204		  49.78	[36.41-63.15] pg/ml increase	Illumina [1,940,245] (imputed)	N
03/17/2012	22367966	Lin X	02/24/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22367966	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	19q13.33	19	48703374	FUT2	FUT2			2524			rs1047781-?	rs1047781	0	1047781	missense	0	NR	4E-36	35.39794000867203		  70.21	[59.37-81.05] pg/ml increase	Illumina [1,940,245] (imputed)	N
03/15/2012	22362865	Knaapila A	02/23/2012	Chem Senses	http://www.ncbi.nlm.nih.gov/pubmed/22362865	A genome-wide study on the perception of the odorants androstenone and galaxolide.	Odorant perception	1,573 European ancestry young-adult twins and singleton siblings	200 European ancestry adult monozygous twin individuals, 26 European ancestry adult dizygous twin individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2.3 million](imputed)	N
03/17/2012	22383897	Long J	02/23/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22383897	Genome-wide association study in east Asians identifies novel susceptibility loci for breast cancer.	Breast cancer	2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls	up to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls	6q25.1	6	149287738	TAB2	UST - TAB2	10090	23118		      210.75	       30.56	rs9485372-G	rs9485372	0	9485372	Intergenic	1	0.55	4E-12	11.39794000867204		   1.11	[1.09-1.15] 	Affymetrix [690,947]	N
03/17/2012	22383897	Long J	02/23/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22383897	Genome-wide association study in east Asians identifies novel susceptibility loci for breast cancer.	Breast cancer	2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls	up to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls	6q25.1	6	151974478	ESR1	ESR1			2099			rs9383951-G	rs9383951	0	9383951	intron	0	0.90	2E-6	5.698970004336018		   1.14	[1.08-1.19] 	Affymetrix [690,947]	N
03/17/2012	22383897	Long J	02/23/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22383897	Genome-wide association study in east Asians identifies novel susceptibility loci for breast cancer.	Breast cancer	2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls	up to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls	11q24.3	11	129603795	BARX2, TMEM45B	RPS27P20 - TMEM45B	100271581	120224		       65.62	      212.05	rs7107217-C	rs7107217	0	7107217	Intergenic	1	0.36	5E-7	6.30102999566398		   1.08	[1.05-1.11] 	Affymetrix [690,947]	N
03/15/2012	22383894	Pierce BL	02/23/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22383894	Genome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh.	Arsenic metabolism 	1,313 Bangladeshi ancestry individuals	1,085 Bangladeshi ancestry cases, 1,794 Bangladeshi ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [259,597]	N
04/28/2012	22497812	Clark PJ	02/22/2012	J Viral Hepat	http://www.ncbi.nlm.nih.gov/pubmed/22497812	Interleukin 28B polymorphisms are the only common genetic variants associated with low-density lipoprotein cholesterol (LDL-C) in genotype-1 chronic hepatitis C and determine the association between LDL-C and treatment response.	Lipid levels in hepatitis C treatment	1,017 European ancestry cases, 207 African American cases, 95 Hispanic cases	NA	19q13.2	19	39241143	IL28B	IFNL3P1 - IFNL3	100421129	282617		        3.84	        2.49	rs12980275-?	rs12980275	0	12980275	Intergenic	1	NR	5E-17	16.30102999566398		NR	NR	Illumina [565,759]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	12q15	12	68385633	MDM1	MDM1 - PSMC6P2	56890	160410		       53.25	       88.10	rs416350-?	rs416350	0	416350	Intergenic	1	NR	4E-8	7.397940008672037	(Hyperthymic)	   2.10	[NR] unit increase	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	22q13.31	22	45566024	FBLN1	FBLN1			2192			rs1985671-?	rs1985671	0	1985671	intron	0	NR	2E-8	7.698970004336018	(Hyperthymic)	   1.06	[NR] unit decrease	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	1q32.3	1	211981666	INTS7	INTS7			25896			rs17018311-?	rs17018311	0	17018311	intron	0	NR	2E-8	7.698970004336018	(Irritable)	   4.21	[NR] unit increase	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	21q22.2	21	39197853	BRWD1	BRWD1			54014			rs2150410-?	rs2150410	0	2150410	intron	0	NR	4E-6	5.397940008672037	(Hyperthymic)	   1.69	[NR] unit decrease	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	3p24.3	3	20179220	SGOL1	SGOL1;SGOL1-AS1			151648;100874028			rs6767049-?	rs6767049	0	6767049	intron;intron	0	NR	2E-6	5.698970004336018	(Dysthymic)	    .77	[NR] unit decrease	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	4q34.2	4	175740936	GPM6A	GPM6A			2823			rs17599018-?	rs17599018	0	17599018	intron	0	NR	2E-6	5.698970004336018	(Dysthymic)	    .98	[NR] unit increase	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	11p12	11	39887112	LRRC4C	RPL18P8 - LRRC4C	100129670	57689		      725.14	      227.09	rs11035577-?	rs11035577	0	11035577	Intergenic	1	NR	6E-6	5.221848749616356	(Dysthymic)	   1.03	[NR] unit decrease	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	12q14.1	12	59046451	Intergenic	RPS6P22 - METTL15P2	100129227	644915		       25.53	        6.87	rs17121944-?	rs17121944	0	17121944	Intergenic	1	NR	4E-6	5.397940008672037	(Dysthymic)	   2.66	[NR] unit increase	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	18q12.1	18	29026683	CDH2	ARIH2P1 - HSPA9P2	390844	100873903		      373.27	      229.81	rs2155929-?	rs2155929	0	2155929	Intergenic	1	NR	5E-6	5.301029995663981	(Dysthymic)	   1.01	[NR] unit increase	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	13q31.1	13	84458192	SLITRK1	LINC00333			100874128			rs17371334-?	rs17371334	0	17371334		0	NR	2E-6	5.698970004336018	(Cyclothymic)	   1.05	[NR] unit decrease	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	2p24.2	2	18062268	Intergenic	KCNS3 - RDH14	3790	57665		      129.31	      492.46	rs4075511-?	rs4075511	0	4075511	Intergenic	1	NR	3E-6	5.522878745280337	(Irritable)	    .93	[NR] unit decrease	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	4p15.32	4	17133720	Intergenic	MTND5P4 - RPS7P6	100873200	100270869		       71.56	      293.95	rs4698169-?	rs4698169	0	4698169	Intergenic	1	NR	2E-6	5.698970004336018	(Anxious)	   2.11	[NR] unit increase	Affymetrix [703,012]	N
03/30/2012	22365631	Greenwood TA	02/22/2012	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22365631	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	12q23.3	12	108209193	WSCD2	WSCD2			9671			rs7313402-?	rs7313402	0	7313402	intron	0	NR	8E-6	5.096910013008055	(Anxious)	   1.13	[NR] unit increase	Affymetrix [703,012]	N
03/30/2012	22354554	Thompson SD	02/21/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/22354554	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	3q13.33	3	119508400	C3orf1	TIMMDC1			51300			rs4688011-T	rs4688011	0	4688011	intron	0	0.19	1E-7	7		   1.23	[1.13-1.33] 	Affmyetrix [561,137]	N
03/30/2012	22354554	Thompson SD	02/21/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/22354554	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	10q21.3	10	63246696	JMJD1C	JMJD1C			221037			rs6479891-T	rs6479891	0	6479891	intron	0	0.14	2E-7	6.698970004336019		   1.19	[1.07-1.32] 	Affmyetrix [561,137]	N
03/30/2012	22354554	Thompson SD	02/21/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/22354554	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	10q21.3	10	63555637	REEP3	REEP3			221035			rs12411988-C	rs12411988	0	12411988	intron	0	0.13	3E-7	6.522878745280337		   1.18	[1.06-1.31] 	Affmyetrix [561,137]	N
03/30/2012	22354554	Thompson SD	02/21/2012	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/22354554	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	15q26.3	15	98529676	IGF1R, FAM169B	FAM169B - IGF1R	283777	3480		       15.29	      119.37	rs12719740-T	rs12719740	0	12719740	Intergenic	1	0.18	7E-7	6.154901959985743		   1.15	[1.06-1.25] 	Affmyetrix [561,137]	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	16q12.2	16	53808996	FTO	FTO			79068			rs12149832-A	rs12149832	0	12149832	intron	0	0.20	5E-22	21.30102999566398		    .07	[0.057-0.089] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	11p14.1	11	27706992	BDNF	BDNF			627			rs2030323-C	rs2030323	0	2030323	intron	0	0.60	4E-16	15.39794000867204		    .05	[0.034-0.058] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	19q13.32	19	45669020	GIPR	GIPR			2696			rs11671664-G	rs11671664	0	11671664	intron	0	0.45	7E-14	13.15490195998574		    .05	[0.034-0.058] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	6p22.3	6	20694653	CDKAL1	CDKAL1			54901			rs2206734-C	rs2206734	0	2206734	intron	0	0.59	1E-11	11		    .04	[0.027-0.051] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	18q21.32	18	60161404	MC4R	RPS3AP49 - MC4R	400652	4160		       11.00	      209.93	rs2331841-A	rs2331841	0	2331841	Intergenic	1	0.25	2E-11	10.69897000433602		    .05	[0.032-0.060] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	9q21.12	9	70383416	KLF9	SMC5 - KLF9	23137	687		       28.54	        1.18	rs11142387-C	rs11142387	0	11142387	Intergenic	1	0.46	1E-9	8.999999999999998		    .04	[0.018-0.062] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	1q25.2	1	177886382	SEC16B	BRINP2 - SEC16B	57795	89866		      603.96	       42.73	rs516636-A	rs516636	0	516636	Intergenic	1	0.22	3E-9	8.522878745280337		    .05	[0.034-0.066] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	3p22.1	3	42261582	CCK	CCK			885			rs4377469-T	rs4377469	0	4377469	intron	0	0.69	2E-7	6.698970004336019		    .04	[0.025-0.053] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	9q22.32	9	94306644	ZNF169	VDAC1P11 - NUTM2F	100310841	54754		       18.09	       11.55	rs10993160-A	rs10993160	0	10993160	Intergenic	1	0.83	6E-7	6.221848749616355		    .05	[0.031-0.075] unit increase	Illumina [2,178,018] (imputed)	N
03/23/2012	22344221	Okada Y	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344221	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	2q32.2	2	190120954	KLF9	C2orf88			84281			rs13034723-A	rs13034723	0	13034723	intron	0	NR	2E-8	7.698970004336018	(rs11142387-C)	    .07	[0.042-0.090] unit increase	Illumina [2,178,018] (imputed)	N
03/19/2012	22344219	Wen W	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344219	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	19q13.32	19	45669020	GIPR, QPCTL	GIPR			2696			rs11671664-G	rs11671664	0	11671664	intron	0	0.50	6E-14	13.22184874961636		   4.22	[2.73-5.71] % increase	Affymetrix & Illumina [2,474,474] (imputed)	N
03/19/2012	22344219	Wen W	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344219	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	2p23.3	2	24908447	ADCY3, DNAJC27	ADCY3			109			rs6545814-G	rs6545814	0	6545814	intron	0	0.45	1E-13	13		   3.26	[1.77-4.75] % increase	Affymetrix & Illumina [2,474,474] (imputed)	N
03/19/2012	22344219	Wen W	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344219	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	15q23	15	67788548	MAP2K5	MAP2K5			5607			rs4776970-A	rs4776970	0	4776970	intron	0	0.22	2E-9	8.698970004336019		   2.55	[0.79-4.31] % increase	Affymetrix & Illumina [2,474,474] (imputed)	N
03/19/2012	22344219	Wen W	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344219	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	6p22.3	6	20685255	CDKAL1	CDKAL1			54901			rs9356744-T	rs9356744	0	9356744	intron	0	0.58	2E-11	10.69897000433602		   3.39	[1.90-4.88] % increase	Affymetrix & Illumina [2,474,474] (imputed)	N
03/19/2012	22344219	Wen W	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344219	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	5q15	5	96514546	PCSK1	PCSK1 - CAST	5122	831		       81.27	      147.49	rs261967-C	rs261967	0	261967	Intergenic	1	0.41	5E-9	8.301029995663981		   3.77	[2.26-5.28] % increase	Affymetrix & Illumina [2,474,474] (imputed)	N
03/19/2012	22344219	Wen W	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344219	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	16p12.3	16	20246545	GP2	SNRPEP3 - GP2	100129329	2813		        7.30	       63.03	rs12597579-C	rs12597579	0	12597579	Intergenic	1	0.80	1E-8	8		   4.09	[2.21-5.97] % increase	Affymetrix & Illumina [2,474,474] (imputed)	N
03/19/2012	22344219	Wen W	02/19/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22344219	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	11p13	11	31883988	PAX6	DKFZp686K1684			440034			rs652722-C	rs652722	0	652722	intron	0	0.61	8E-8	7.096910013008055		   2.75	[1.24-4.26] % increase	Affymetrix & Illumina [2,474,474] (imputed)	N
03/13/2012	22343285	Bakken TE	02/16/2012	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/22343285	Association of common genetic variants in GPCPD1 with scaling of visual cortical surface area in humans.	Cortical structure	421 European ancestry individuals	760 European ancestry individuals	20p12.3	20	5607803	GPCPD1	GPCPD1			56261			rs238295-?	rs238295	0	238295	intron	0	NR	6E-9	8.221848749616356		NR	NR	Affymetrix [597,198] 	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	11q12.2	11	61790331	FADS1, FADS2, FADS3	TMEM258			746			rs102275-?	rs102275	0	102275	intron	0	NR	1E-203	203	(levels)	    .00	[0.80-23.0] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	19q13.41	19	52780882	ZNF600	ZNF600			162966			rs10404486-?	rs10404486	0	10404486	intron	0	NR	9E-9	8.045757490560675	(proportions)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	15q21.3	15	58386313	LIPC	LOC102724766			102724766			rs10468017-?	rs10468017	0	10468017	intron	0	NR	7E-43	42.15490195998574	(levels)	    .00	[0.80-4.70] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	6p21.32	6	32168770	AGPAT1	AGPAT1;EGFL8;PPT2-EGFL8			10554;80864;100532746			rs1061808-?	rs1061808	0	1061808	UTR-3;intron;nearGene-3	0	NR	8E-10	9.096910013008054	(proportions)	    .90	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	11p15.4	11	7345864	SYT9	SYT9			143425			rs10769780-?	rs10769780	0	10769780	intron	0	NR	3E-8	7.522878745280337	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	14q24.1	14	67509105	PLEKHH1	TMEM229B			161145			rs1077989-?	rs1077989	0	1077989	intron	0	NR	9E-18	17.04575749056067	(levels)	    .00	[0.80-1.80] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	10q25.3	10	116638460	PNLIPRP2	PNLIPRP2			5408			rs10885997-?	rs10885997	0	10885997	cds-synon	0	NR	8E-9	8.096910013008056	(proportions)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	18q11.2	18	21681452	ABHD3	ABHD3			171586			rs11662721-?	rs11662721	0	11662721	intron	0	NR	1E-8	8	(proportions)	    .00	[0.70-0.80] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	12q23.1	12	96464584	CDK17	CDK17 - C12orf55	5128	144535		       64.00	       24.99	rs12423247-?	rs12423247	0	12423247	Intergenic	1	NR	3E-8	7.522878745280337	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	2q37.3	2	238186781	ILKAP	ILKAP			80895			rs12472274-?	rs12472274	0	12472274	intron	0	NR	2E-8	7.698970004336018	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	2q24.3	2	162925277	KCNH7	RNA5SP109 - RPL7P61	100873379	101929589		      428.23	      226.97	rs1424760-?	rs1424760	0	1424760	Intergenic	1	NR	4E-8	7.397940008672037	(proportions)	    .70	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	11q14.1	11	85306432	DLG2	DLG2			1740			rs17148090-?	rs17148090	0	17148090	intron	0	NR	4E-8	7.397940008672037	(levels)	    .70	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	6p24.2	6	10982126	ELOVL2	ELOVL2			54898			rs17606561-?	rs17606561	0	17606561	UTR-3	0	NR	1E-11	11	(proportions)	    .00	[0.80-1.10] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	13q22.1	13	74553977	KLF12	LINC00347			338864			rs17718828-?	rs17718828	0	17718828	intron	0	NR	1E-8	8	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	3p22.2	3	37474336	ITGA9	ITGA9			3680			rs197770-?	rs197770	0	197770	intron	0	NR	2E-8	7.698970004336018	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	11q12.1	11	56094615	OR812	OR8I2			120586			rs2945816-?	rs2945816	0	2945816	nearGene-3	0	NR	2E-8	7.698970004336018	(proportions)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	16p13.11	16	15046354	PDXDC1	PDXDC1;NTAN1			23042;123803			rs4500751-?	rs4500751	0	4500751	intron;intron	0	NR	6E-23	22.22184874961636	(levels)	    .00	[0.80-2.40] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	2p23.3	2	27617773	GCKR	ZNF512			84450			rs4666002-?	rs4666002	0	4666002	intron	0	NR	7E-11	10.15490195998574	(levels)	    .00	[1.10-0.70] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	10q24.31	10	100315722	PKD2L1	PKD2L1			9033			rs603424-?	rs603424	0	603424	intron	0	NR	6E-14	13.22184874961636	(levels)	   1.40	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	13q21.2	13	60939535	PCDH20	LINC00378 - MIR3169	101926930	100422973		      243.73	      260.26	rs7337573-?	rs7337573	0	7337573	Intergenic	1	NR	2E-8	7.698970004336018	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	16p13.3	16	5535851	ALG1	RBFOX1			54715			rs870288-?	rs870288	0	870288	intron	0	NR	1E-8	8	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	1p21.3	1	95083980	ALG14	ALG14 - TMEM56	199857	148534		       11.02	       33.36	rs9437689-?	rs9437689	0	9437689	Intergenic	1	NR	5E-8	7.30102999566398	(proportions)	    .70	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	11q23.3	11	116778201	APOA5	ZPR1			8882			rs964184-?	rs964184	0	964184	intron	0	NR	2E-10	9.698970004336017	(proportions)	   1.00	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	3q23	3	142930268	PAQR9	LOC100507389			100507389			rs9832727-?	rs9832727	0	9832727	intron	0	NR	6E-29	28.22184874961635	(proportions)	    .00	[0.80-3.10] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NR	16q21	16	60280752	CDH8	APOOP5 - GNPATP	644649	100130060		      525.56	      373.35	rs9932186-?	rs9932186	0	9932186	Intergenic	1	NR	3E-8	7.522878745280337	(proportions)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	17p13.2	17	4779740	PLD2	TM4SF5			9032			rs12051548-?	rs12051548	0	12051548	intron	0	NR	1E-9	8.999999999999998	(levels)	    .00	[0.70-0.90] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	4p12	4	47549846	ATP10D	ATP10D			57205			rs13106975-?	rs13106975	0	13106975	intron	0	NR	2E-19	18.69897000433602	(levels)	    .00	[0.70-2.0] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	5p15.31	5	6821801	PAPD7	PAPD7 - MIR4278	11044	100422999		       57.06	        6.05	rs1566039-?	rs1566039	0	1566039	Intergenic	1	NR	1E-8	8	(levels)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	14q23.2	14	63765668	SGPP1	EIF2S2P1 - HMGN2P14	319115	100874458		       29.45	       27.30	rs17101394-?	rs17101394	0	17101394	Intergenic	1	NR	3E-57	56.52287874528033	(levels)	    .00	[0.70-6.3] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	11q12.2	11	61911282	FADS1, FADS2, FADS3	RAB3IL1			5866			rs174479-?	rs174479	0	174479	intron	0	NR	2E-14	13.69897000433602	(levels)	    .00	[0.80-1.50] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	19p13.11	19	19678719	LPAR2	ZNF101			94039			rs2304130-?	rs2304130	0	2304130	intron	0	NR	6E-9	8.221848749616356	(proportions)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	16q23.1	16	76532260	CNTNAP4	CNTNAP4			85445			rs4485401-?	rs4485401	0	4485401	intron	0	NR	2E-8	7.698970004336018	(proportions)	    .80	[NR] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	20p12.1	20	12988752	SPTLC3	PA2G4P2 - SPTLC3	170533	55304		      607.23	       20.23	rs680379-?	rs680379	0	680379	Intergenic	1	NR	2E-16	15.69897000433602	(levels)	    .00	[0.80-1.70] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	19p13.2	19	8206837	LASS4	FBN3 - CERS4	84467	79603		       59.34	        2.49	rs7258249-?	rs7258249	0	7258249	Intergenic	1	NR	1E-34	34	(levels)	    .00	[0.80-3.70] % increase	Illumina [NR] (imputed)	N
03/27/2012	22359512	Demirkan A	02/16/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22359512	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NR	19q13.32	19	44929300	APOE-C1, APOE-C2, APOE-C4	APOC1P1			342			rs7259004-?	rs7259004	0	7259004	intron	0	NR	5E-10	9.301029995663981	(levels)	    .00	[0.80-1.0] % increase	Illumina [NR] (imputed)	N
03/13/2012	22341974	Paternoster L	02/16/2012	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22341974	Genome-wide association study of three-dimensional facial morphology identifies a variant in PAX3 associated with nasion position.	Facial morphology	2,185 European ancestry adolescents	1,622 European ancestry adolescents	2q36.1	2	222203567	PAX3	PAX3			5077			rs7559271-G	rs7559271	0	7559271	intron	0	NR	4E-16	15.39794000867204	(n-men 3D dist)	    .39	[0.30-0.48] mm increase	Illumina [2,543,887] (imputed)	N
03/13/2012	22342860	Marjamaa A	02/15/2012	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/22342860	A common variant near the KCNJ2 gene is associated with T-peak to T-end interval.	Cardiac repolarization	1,870 European ancestry individuals	3,745 European ancestry individuals	17q24.3	17	70525720	KCNJ2	CALM2P1 - CASC17	100128390	101928165		      283.34	      572.05	rs7219669-T	rs7219669	0	7219669	Intergenic	1	0.38	6E-14	13.22184874961636		   1.70	 ms decrease	Illumina [541,864]	N
03/13/2012	22333899	Wei WH	02/15/2012	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22333899	Genome-wide analysis of epistasis in body mass index using multiple human populations.	Body mass index	3,653 European ancestry individuals	5,071 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR] 	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	1p32.3	1	55039974	PCSK9	PCSK9			255738			rs11591147-?	rs11591147	0	11591147	missense	0	NR	5E-9	8.301029995663981	(baseline LDL-C)	   5.00	[3.43-6.57] mg/dL decrease	Illumina [814,418]	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	4q22.1	4	88117930	ABCG2	ABCG2			9429			rs1481012-?	rs1481012	0	1481012	intron	0	NR	2E-15	14.69897000433602	(fractional LDL-C reduction)	   5.10	[3.34-6.86] % decrease	Illumina [814,418]	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	6q26	6	160589086	LPA	LPA			4018			rs10455872-?	rs10455872	0	10455872	intron	0	NR	5E-15	14.30102999566398	(fractional LDL-C reduction)	   6.80	[4.45-9.15] % increase	Illumina [814,418]	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	19q13.32	19	44908822	APOE	APOE			348			rs7412-?	rs7412	0	7412	missense	0	NR	2E-47	46.69897000433602	(baseline LDL-C)	   6.20	[5.42-6.98] mg/dL decrease	Illumina [814,418]	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	6p22.3	6	16161194	GMPR, IDOL, MYLIP	MIR4639 - MRPL42P2	100616269	346116		       19.57	       10.41	rs6924995-?	rs6924995	0	6924995	Intergenic	1	NR	5E-7	6.30102999566398	(absolute LDL-C reduction)	   4.10	[2.73-5.47] mg/dL increase	Illumina [814,418]	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	6q23.2	6	130935224	EPB41L2	EPB41L2			2037			rs7769153-?	rs7769153	0	7769153	intron	0	NR	2E-7	6.698970004336019	(fractional LDL-C reduction)	  10.30	[6.77-13.83] % increase	Illumina [814,418]	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	9q22.1	9	88925144	C9orf47, S1PR3, SHC3	MIR4289 - PCNPP2	100423015	100128911		      179.24	       45.67	rs1875620-?	rs1875620	0	1875620	Intergenic	1	NR	7E-7	6.154901959985743	(absolute LDL-C reduction)	   2.80	[1.62-3.98] mg/dL increase	Illumina [814,418]	N
03/14/2012	22331829	Chasman DI	02/13/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22331829	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statin therapy (LDL-C)	6,989 European ancestry individuals	NR	19p12	19	22431320	LOC342994, ZNF98	ZNF98 - ZNF209P	148198	441843		        8.97	       32.60	rs931608-?	rs931608	0	931608	Intergenic	1	NR	3E-7	6.522878745280337	(absolute LDL-C reduction)	   4.20	[2.44-5.96] mg/dL increase	Illumina [814,418]	N
03/10/2012	22327514	Postel-Vinay S	02/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22327514	Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma.	Ewing sarcoma	Up to 427 European ancestry cases, up to 4,352 European ancestry controls	661 European ancestry cases, 1,299 European ancestry controls	1p36.22	1	10986798	TARDBP	CFL1P6			390996			rs9430161-G	rs9430161	0	9430161		0	0.79	1E-20	20		   2.20	[1.77-2.72] 	NR [286,966]	N
03/10/2012	22327514	Postel-Vinay S	02/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22327514	Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma.	Ewing sarcoma	Up to 427 European ancestry cases, up to 4,352 European ancestry controls	661 European ancestry cases, 1,299 European ancestry controls	10q21.3	10	62820815	EGR2, ADO, ZNF365	EGR2			1959			rs224278-C	rs224278	0	224278	intron	0	0.58	4E-17	16.39794000867203		   1.66	[1.42-1.93] 	NR [286,966]	N
03/10/2012	22327514	Postel-Vinay S	02/12/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22327514	Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma.	Ewing sarcoma	Up to 427 European ancestry cases, up to 4,352 European ancestry controls	661 European ancestry cases, 1,299 European ancestry controls	15q15.1	15	40047293	EIF2AK4, SRP14, BMF	SRP14-AS1			100131089			rs4924410-A	rs4924410	0	4924410	intron	0	0.27	7E-9	8.154901959985743		   1.46	[1.23-1.74] 	NR [286,966]	N
03/08/2012	22321639	Pyun JA	02/10/2012	Maturitas	http://www.ncbi.nlm.nih.gov/pubmed/22321639	LAMC1 gene is associated with premature ovarian failure.	Premature ovarian failure	24 cases, 24 controls	98 cases, 218 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
03/08/2012	22318345	Cha PC	02/09/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22318345	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	18q21.2	18	52991406	DCC	DCC			1630			rs7504990-A	rs7504990	0	7504990	intron	0	0.21	7E-8	7.154901959985742		   6.95	[3.43-14.08] 	Illumina [425,706] (imputed)	N
03/08/2012	22318345	Cha PC	02/09/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22318345	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	3p26.2	3	2804632	NR	CNTN4			152330			rs975334-C	rs975334	0	975334	intron	0	0.16	9E-7	6.045757490560675		   8.30	[3.57-19.26] 	Illumina [425,706] (imputed)	N
03/08/2012	22318345	Cha PC	02/09/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22318345	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	9p21.2	9	26694890	NR	FAM71BP1 - CAAP1	100421478	79886		      756.45	      145.80	rs13294589-G	rs13294589	0	13294589	Intergenic	1	0.11	2E-6	5.698970004336018		  12.78	[4.43-36.83] 	Illumina [425,706] (imputed)	N
03/08/2012	22318345	Cha PC	02/09/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22318345	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	5q15	5	94474503	NR	KIAA0825			285600			rs6869388-C	rs6869388	0	6869388	intron	0	0.04	7E-6	5.154901959985742		  72.70	[11.19-472.10] 	Illumina [425,706] (imputed)	N
03/08/2012	22318345	Cha PC	02/09/2012	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22318345	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	7q31.1	7	109512654	NR	C7orf66 - EIF3IP1	154907	442720		      628.07	      446.57	rs10953615-C	rs10953615	0	10953615	Intergenic	1	0.11	9E-6	5.045757490560675		   7.51	[3.08-18.30] 	Illumina [425,706] (imputed)	N
03/03/2012	22322875	Kim SJ	02/09/2012	Circ J	http://www.ncbi.nlm.nih.gov/pubmed/22322875	Genetic association of short sleep duration with hypertension incidence--a 6-year follow-up in the Korean genome and epidemiology study.	Hypertension risk in short sleep duration	4,965 Korean ancestry individuals	NR	1p34.1	1	43651335	JMJD2A	KDM4A			9682			rs660899-?	rs660899	0	660899	intron	0	NR	4E-6	5.397940008672037	SNP+sleep	   7.22	[3.12-16.70] 	Affymetrix [334,750]	N
03/03/2012	22322875	Kim SJ	02/09/2012	Circ J	http://www.ncbi.nlm.nih.gov/pubmed/22322875	Genetic association of short sleep duration with hypertension incidence--a 6-year follow-up in the Korean genome and epidemiology study.	Hypertension risk in short sleep duration	4,965 Korean ancestry individuals	NR	1p31.1	1	69869999	LRRC7	LRRC7			57554			rs2226284-?	rs2226284	0	2226284	intron	0	NR	3E-8	7.522878745280337	SNP+sleep	   5.91	[3.15-11.11] 	Affymetrix [334,750]	N
03/03/2012	22322875	Kim SJ	02/09/2012	Circ J	http://www.ncbi.nlm.nih.gov/pubmed/22322875	Genetic association of short sleep duration with hypertension incidence--a 6-year follow-up in the Korean genome and epidemiology study.	Hypertension risk in short sleep duration	4,965 Korean ancestry individuals	NR	17q11.2	17	32569437	MYO1D	MYO1D			4642			rs225212-?	rs225212	0	225212	intron	0	NR	5E-6	5.301029995663981	SNP+sleep	   5.08	[2.52-10.23] 	Affymetrix [334,750]	N
03/08/2012	22319020	Davies RW	02/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22319020	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.33	6	31216419	HCG27, HLA-C	TRNAI25			100189401			rs3869109-G	rs3869109	0	3869109		0	NR	1E-9	8.999999999999998		   1.14	[NR] 	Affymetrix [~5 million] (imputed)	N
03/08/2012	22319020	Davies RW	02/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22319020	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	1q21.3	1	154465420	ILR6	IL6R			3570			rs2229238-?	rs2229238	0	2229238	UTR-3	0	NR	7E-7	6.154901959985743		   1.45	[NR] 	Affymetrix [~5 million] (imputed)	N
03/08/2012	22319020	Davies RW	02/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22319020	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6p21.1	6	43791136	VEGFA	TRNAI25			100189401			rs6905288-T	rs6905288	0	6905288		0	NR	7E-8	7.154901959985742		   1.23	[NR] 	Affymetrix [~5 million] (imputed)	N
03/08/2012	22319020	Davies RW	02/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22319020	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	6q16.1	6	96632322	FHL5	FHL5 - RPS7P8	9457	442237		       12.39	       16.13	rs12200560-?	rs12200560	0	12200560	Intergenic	1	NR	6E-7	6.221848749616355		   1.11	[NR] 	Affymetrix [~5 million] (imputed)	N
03/08/2012	22319020	Davies RW	02/07/2012	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22319020	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	2q35	2	215420652	FN	FN1			2335			rs17458018-?	rs17458018	0	17458018	intron	0	NR	7E-6	5.154901959985742		   1.22	[NR] 	Affymetrix [~5 million] (imputed)	N
03/09/2012	22310351	Fernandez-Rozadilla C	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310351	Pharmacogenomics in colorectal cancer: a genome-wide association study to predict toxicity after 5-fluorouracil or FOLFOX administration.	Fluorouracil treatment response in colorectal cancer	203 European ancestry cases	791 European ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [497,366]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	1q43	1	238912414	KRT18P32	MIPEPP2 - RPL39P10	100130099	100129952		      133.69	      140.16	rs1915279-?	rs1915279	0	1915279	Intergenic	1	NR	2E-6	5.698970004336018	(GG vs. not GG)	NR	NR	Illumina [856,627]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	2q24.2	2	160928658	TANK	MIR4785 - TANK	100616364	10010		      520.78	      208.27	rs1829975-?	rs1829975	0	1829975	Intergenic	1	NR	6E-6	5.221848749616356	(AG vs. not AG)	NR	NR	Illumina [856,627]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	5q35.2	5	175334092	DRD1	ARL2BPP6 - DRD1	100874421	1812		       42.84	      106.58	rs12652255-?	rs12652255	0	12652255	Intergenic	1	NR	8E-6	5.096910013008055	(CC vs. not CC)	NR	NR	Illumina [856,627]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	7p14.1	7	38201307	STARD3NL	STARD3NL			83930			rs4723738-?	rs4723738	0	4723738	intron	0	NR	6E-6	5.221848749616356	(AG vs. not AG)	NR	NR	Illumina [856,627]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	7p12.3	7	46352969	LOC222052	TTC4P1 - HMGN1P19	222052	100874445		      352.19	      281.65	rs17513961-?	rs17513961	0	17513961	Intergenic	1	NR	1E-7	7	(TT vs. not TT)	NR	NR	Illumina [856,627]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	8p21.2	8	23726713	NKX2-6	LOC101929258			101929258			rs13273073-?	rs13273073	0	13273073	intron	0	NR	7E-6	5.154901959985742	(GT vs. not GT)	NR	NR	Illumina [856,627]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	16q22.3	16	74042353	LOC441506	RPSAP56 - PSMD7	645656	5713		      100.75	      254.42	rs2716601-?	rs2716601	0	2716601	Intergenic	1	NR	1E-6	5.999999999999999	(TT vs. not TT)	NR	NR	Illumina [856,627]	N
03/13/2012	22310353	Man M	02/07/2012	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/22310353	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis 	1,446 individuals	NA	22q13.2	22	40646087	MKL1	RPL4P6 - GAPDHP37	100271033	651258		       58.06	       27.20	rs12159200-?	rs12159200	0	12159200	Intergenic	1	NR	6E-7	6.221848749616355	(AA vs. not AA)	NR	NR	Illumina [856,627]	N
03/09/2012	22306652	Bellenguez C	02/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22306652	Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke.	Stroke	3,548 European ancestry cases, 5,972 European ancestry controls	6,594 European ancestry cases, 34,864 European ancestry controls	7p21.1	7	18992312	HDAC9	HDAC9			9734			rs11984041-A	rs11984041	0	11984041	intron	0	0.09	2E-11	10.69897000433602	(LVD)	   1.42	[1.28-1.57] 	Illumina [495,851]	N
03/03/2012	22306654	Feenstra B	02/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22306654	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	3q25.1	3	152112520	MBNL1	SUCNR1 - MBNL1	56670	4154		      230.43	      131.80	rs11712066-A	rs11712066	0	11712066	Intergenic	1	0.75	2E-17	16.69897000433602		   1.61	[1.44-1.79] 	Illumina [523,420]	N
03/03/2012	22306654	Feenstra B	02/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22306654	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	3q25.2	3	153754374	Intergenic	C3orf79 - RPL21P42	152118	100271162		      251.68	      269.42	rs573872-G	rs573872	0	573872	Intergenic	1	0.23	4E-12	11.39794000867204		   1.41	[1.28-1.56] 	Illumina [523,420]	N
03/03/2012	22306654	Feenstra B	02/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22306654	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	5q35.1	5	173168305	BNIP1, NKX2-5	BNIP1 - RPL7AP33	662	391850		        3.92	       57.53	rs29784-A	rs29784	0	29784	Intergenic	1	0.45	1E-15	15		   1.42	[1.30-1.55] 	Illumina [523,420]	N
03/03/2012	22306654	Feenstra B	02/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22306654	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	6q23.2	6	133837662	NR	MGC34034;LOC100507308			154089;100507308			rs1208285-C	rs1208285	0	1208285	ncRNA;intron	0	0.39	6E-7	6.221848749616355		   1.25	[1.14-1.36] 	Illumina [523,420]	N
03/03/2012	22306654	Feenstra B	02/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22306654	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	11q23.3	11	116912258	NR	SIK3			23387			rs11216185-G	rs11216185	0	11216185	intron	0	0.05	1E-7	7		   1.57	[1.33-1.86] 	Illumina [523,420]	N
03/09/2012	22306650	Thye T	02/05/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22306650	Common variants at 11p13 are associated with susceptibility to tuberculosis.	Tuberculosis	1,329 African ancestry cases, 1,847 African ancestry controls	2,024 African ancestry cases, 5,154 African ancestry controls, 1,025 Indonesian ancestry cases, 983 Indonesian ancestry controls, 4,441 European ancestry cases, 5,874 European ancestry controls	11p13	11	32342641	WT1	RCN1 - WT1	5954	7490		      236.92	       45.13	rs2057178-?	rs2057178	0	2057178	Intergenic	1	NR	3E-11	10.52287874528034		   1.10	[1.01-1.22] Russian samples	Affymetrix [793,964]	N
03/10/2012	22293688	Huang J	02/01/2012	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22293688	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Crohn's disease	16,179 European ancestry individuals	NR	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-?	rs11209026	0	11209026	missense	0	NR	4E-21	20.39794000867204		   3.18	[2.91-3.44] 	NR [6,233,112] (imputed)	N
03/09/2012	22293688	Huang J	02/01/2012	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22293688	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Type 1 diabetes	16,179 European ancestry individuals	NR	10p15.1	10	6052734	IL2RA	IL2RA			3559			rs61839660-?	rs61839660	0	61839660	intron	0	NR	5E-9	8.301029995663981		   1.60	[1.44-1.76] 	NR [6,233,112] (imputed)	N
03/09/2012	22293688	Huang J	02/01/2012	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22293688	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Type 1 diabetes	16,179 European ancestry individuals	NR	12q24.12	12	111270654	CUX2	CUX2			23316			rs1265564-?	rs1265564	0	1265564	intron	0	NR	1E-16	16		   1.45	[1.28-1.67] 	NR [6,233,112] (imputed)	N
03/10/2012	22293688	Huang J	02/01/2012	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22293688	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Type 2 diabetes	16,179 European ancestry individuals	NR	9p21.3	9	22137686	CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      125.15	      309.16	rs7018475-?	rs7018475	0	7018475	Intergenic	1	NR	3E-8	7.522878745280337		   1.35	[1.18-1.56] 	NR [6,233,112] (imputed)	N
04/03/2012	22420046	Stergiakouli E	02/01/2012	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22420046	Investigating the contribution of common genetic variants to the risk and pathogenesis of ADHD.	Attention deficit hyperactivity disorder	727 European ancestry children, 5,081 European ancestry individuals	1,142 European ancestry individuals, 896 cases and 2,455 controls from 2,064 parent-child trios	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [502,702]	N
02/25/2012	22290723	Ryu J	01/30/2012	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/22290723	Association of glycosylated hemoglobin with the gene encoding CDKAL1 in the Korean Association Resource (KARE) study.	Glycated hemoglobin levels	4,275 Korean ancestry individuals	3,782 Korean ancestry individuals	6p22.3	6	20725192	CDKAL1	CDKAL1			54901			rs7747752-C	rs7747752	0	7747752	intron	0	0.53	1E-11	11		    .05	[NR] % decrease	Affymetrix [1,693,116] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	1q23.3	1	161571067	FCGR2B, FCGR2A	FCGR3A - FCGR2C	2214	9103		       20.33	       10.27	rs67418890-?	rs67418890	0	67418890	Intergenic	1	NR	1E-10	10	(XL-HDL-CE)	    .19	[0.13-0.25] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	4q13.3	4	72456848	ALB	ADAMTS3			9508			rs115136538-?	rs115136538	0	115136538	intron	0	NR	5E-18	17.30102999566398	(Albumin)	    .51	[0.39-0.63] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	6p22.1	6	30049294	PPP1R11	ZNRD1-AS1			80862			rs6917603-?	rs6917603	0	6917603	intron	0	NR	3E-29	28.52287874528033	(XXL-VLDL-P)	    .24	[0.2-0.28] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	11q13.3	11	68794860	CPT1A	CPT1A			1374			rs17610395-?	rs17610395	1	2229738	missense	0	NR	8E-12	11.09691001300806	(LA/PUFA)	    .17	[0.13-0.21] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	1p32.2	1	55650832	PCSK9	GOT2P1 - RPSAP20	645538	127406		      282.06	      556.64	rs72669744-?	rs72669744	0	72669744	Intergenic	1	NR	1E-19	19	(L-LDL-FC)	    .59	[0.47-0.71] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	1p31.3	1	62503731	ANGPTL3	DOCK7			85440			rs1168029-?	rs1168029	0	1168029	intron	0	NR	3E-13	12.52287874528034	(MobCH)	    .13	[0.091-0.169] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	7q11.23	7	73596112	MLXIPL	MLXIPL			51085			rs13247874-?	rs13247874	0	13247874	intron	0	NR	8E-14	13.09691001300805	(VLDL-D)	    .16	[0.12-0.2] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	8p21.3	8	20054859	LPL	LPL - RPL30P9	4023	100270981		       87.60	       58.48	rs115849089-?	rs115849089	0	115849089	Intergenic	1	NR	4E-15	14.39794000867204	(M-VLDL-PL)	    .22	[0.16-0.28] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	9q31.1	9	104903458	ABCA1	ABCA1			19			rs2575876-?	rs2575876	0	2575876	intron	0	NR	2E-11	10.69897000433602	(Tot-C/Est-C)	    .14	[0.1-0.18] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	11q12.2	11	61803311	FADS1, FADS2, FADS3	FADS1			3992			rs174547-?	rs174547	0	174547	intron	0	NR	8E-262	261.096910013008	(LA/PUFA)	    .57	[0.53-0.61] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	11q23.3	11	116791863	APOA1, APOC3, APOA4, APOA5	APOA5			116519			rs651821-?	rs651821	0	651821	UTR-5	0	NR	8E-20	19.09691001300806	(Val/serum TG)	    .27	[0.21-0.33] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	15q21.3	15	58388444	LIPC	LOC102724766			102724766			rs35853021-?	rs35853021	0	35853021	intron	0	NR	7E-76	75.15490195998574	(XL-HDL-TG)	    .31	[0.27-0.35] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	16p13.11	16	15054789	PDXC1, C20:2, C20:3	PDXDC1;NTAN1;LOC102724985			23042;123803;102724985			rs11075253-?	rs11075253	0	11075253	intron;intron;intron	0	NR	5E-15	14.30102999566398	(LA/PUFA)	    .14	[0.1-0.18] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-?	rs3764261	0	3764261	Intergenic	1	NR	1E-36	35.99999999999999	(HDL-C)	    .22	[0.18-0.26] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	18q21.1	18	49634444	LIPG	LIPG - SMUG1P1	9388	100129143		       41.54	       15.91	rs7228085-?	rs7228085	0	7228085	Intergenic	1	NR	7E-11	10.15490195998574	(XL-HDL-TG)	    .11	[0.071-0.149] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	19p13.2	19	11077477	LDLR	SMARCA4 - LDLR	6597	3949		       15.20	       11.89	rs55791371-?	rs55791371	0	55791371	Intergenic	1	NR	8E-17	16.09691001300806	(M-LDL-C/M-LDL-PL)	    .26	[0.2-0.32] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	19q13.32	19	44908822	APOE, APOC1, APOC2	APOE			348			rs7412-?	rs7412	0	7412	missense	0	NR	3E-58	57.52287874528033	(L-LDL-FC)	    .75	[0.65-0.85] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NR	20q13.12	20	45906012	PLTP	PLTP			5360			rs6065904-?	rs6065904	0	6065904	intron	0	NR	2E-31	30.69897000433602	(L-HDL-L/M-HDL-L)	    .22	[0.18-0.26] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	2p14	2	64993776	SLC1A4	SLC1A4			6509			rs2160387-?	rs2160387	0	2160387	intron	0	NR	3E-22	21.52287874528033	(Ala, Val)	    .17	[0.13-0.21] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	4q22.1	4	88305270	PPM1K	LOC101929118			101929118			rs1440581-?	rs1440581	0	1440581	intron	0	NR	2E-16	15.69897000433602	(Fischer's ratio)	    .13	[0.091-0.169] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	5q35.3	5	177414338	F12	F12 - GRK6	2161	2870		        4.76	       12.16	rs2545801-?	rs2545801	0	2545801	Intergenic	1	NR	9E-11	10.04575749056067	(Phe)	    .12	[0.081-0.159] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	10q24.2	10	97599982	DHDPSL	HOGA1			112817			rs2297644-?	rs2297644	0	2297644	intron	0	NR	1E-12	12	(Gln, His)	    .15	[0.11-0.19] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	16q22.2	16	71600908	TAT	TAT - MARVELD3	6898	91862		       23.81	       25.25	rs4788815-?	rs4788815	0	4788815	Intergenic	1	NR	2E-17	16.69897000433602	(Phe, Tyr)	    .15	[0.11-0.19] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	17p13.1	17	7239532	SLC2A4	PHF23			79142			rs117616209-?	rs117616209	0	117616209	intron	0	NR	3E-14	13.52287874528034	(Fischer's ratio)	    .51	[0.37-0.65] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	22q11.21	22	19167009	SLC25A1	GSC2 - SLC25A1	2928	6576		       16.73	        8.57	rs807669-?	rs807669	0	807669	Intergenic	1	NR	3E-16	15.52287874528034	(Citrate)	    .14	[0.1-0.18] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	3E-18	17.52287874528034	(Ala, Gln)	    .15	[0.11-0.19] unit decrease	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-?	rs560887	0	560887	intron	0	NR	2E-17	16.69897000433602	(Glc)	    .15	[0.11-0.19] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	4q35.2	4	186231173	KLKB1	KLKB1			3818			rs4241816-?	rs4241816	0	4241816	intron	0	NR	6E-13	12.22184874961636	(His, Val)	    .12	[0.081-0.159] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	6q21	6	111473206	SLC16A10	REV3L			5980			rs6900341-?	rs6900341	0	6900341	intron	0	NR	4E-15	14.39794000867204	(Ala, Tyr)	    .13	[0.091-0.169] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	11q14.3	11	92975544	MTNR1B	MTNR1B			4544			rs10830963-?	rs10830963	0	10830963	intron	0	NR	3E-11	10.52287874528034	(Glc)	    .14	[0.1-0.18] unit increase	Illumina [~7.7 million] (imputed)	N
02/28/2012	22286219	Kettunen J	01/29/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286219	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NR	12q13.3	12	56471272	GLS2	GLS2;SPRYD4			27165;283377			rs2638315-?	rs2638315	0	2638315	UTR-3;nearGene-3	0	NR	2E-35	34.69897000433602	(Gln, Glc)	    .29	[0.25-0.33] unit decrease	Illumina [~7.7 million] (imputed)	N
03/23/2012	22293537	Kiyotani K	01/29/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22293537	A genome-wide association study identifies four genetic markers for hematological toxicities in cancer patients receiving gemcitabine therapy.	Response to gemcitabine in pancreatic cancer 	21 Japanese ancestry adverse reaction cases, 58 Japanese ancestry non-adverse reaction individuals	33 Japanese ancestry adverse reaction cases, 62 Japanese ancestry non-adverse reaction individuals	9q21.33	9	87620879	DAPK1	DAPK1			1612			rs11141915-T	rs11141915	0	11141915	intron	0	0.62	1E-6	5.999999999999999	(Allelic)	   4.10	[2.21-7.62] 	Illumina [470,064]	N
03/23/2012	22293537	Kiyotani K	01/29/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22293537	A genome-wide association study identifies four genetic markers for hematological toxicities in cancer patients receiving gemcitabine therapy.	Response to gemcitabine in pancreatic cancer 	21 Japanese ancestry adverse reaction cases, 58 Japanese ancestry non-adverse reaction individuals	33 Japanese ancestry adverse reaction cases, 62 Japanese ancestry non-adverse reaction individuals	2q21.2	2	133680388	Intergenic	NCKAP5 - MGAT5	344148	4249		       38.84	      439.55	rs1901440-C	rs1901440	0	1901440	Intergenic	1	0.20	3E-6	5.522878745280337	(Recessive)	  34.00	[4.29-269.48] 	Illumina [470,064]	N
02/25/2012	22286170	Cusanovich DA	01/27/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286170	The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes.	Lymphocyte counts	462 Hutterite individuals	NR	1p32.2	1	56661246	PRKAA2	PRKAA2			5563			rs2746347-?	rs2746347	0	2746347	intron	0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [279,749]	N
02/25/2012	22286170	Cusanovich DA	01/27/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286170	The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes.	Lymphocyte counts	462 Hutterite individuals	NR	21q22.3	21	46599955	S100B	S100B			6285			rs881827-?	rs881827	0	881827	intron	0	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [279,749]	N
02/23/2012	22286173	Low SK	01/27/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286173	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	4q31.22	4	147479667	EDNRA	EDNRA			1909			rs6842241-C	rs6842241	0	6842241	nearGene-5	0	0.694	1E-8	8		   1.25	[1.161-1.343] 	Illumina [565,149]	N
02/23/2012	22286173	Low SK	01/27/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286173	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	9p21.3	9	22088261	CDKN2BAS	CDKN2B-AS1			100048912			rs10757272-T	rs10757272	0	10757272	intron	0	0.649	2E-7	6.698970004336019		   1.21	[1.133-1.30] 	Illumina [565,149]	N
02/23/2012	22286173	Low SK	01/27/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286173	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	11p15.5	11	203788	BET1L	BET1L			51272			rs2280543-T	rs2280543	0	2280543	UTR-3	0	0.124	3E-6	5.522878745280337		   1.25	[1.141-1.371] 	Illumina [565,149]	N
02/23/2012	22286173	Low SK	01/27/2012	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22286173	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-C	rs671	0	671	missense	0	0.746	3E-6	5.522878745280337		   1.24	[1.148-1.338] 	Illumina [565,149]	N
02/23/2012	22286212	Urayama KY	01/27/2012	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/22286212	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.33	6	31479019	MICB	TRNAI25			100189401			rs2248462-?	rs2248462	0	2248462		0	NR	7E-16	15.15490195998574	(Total cHL)	   1.64	[1.45-1.85] 	Illumina [502,514]	N
02/23/2012	22286212	Urayama KY	01/27/2012	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/22286212	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	6p21.32	6	32465390	HLA-DRA	TRNAI25			100189401			rs2395185-?	rs2395185	0	2395185		0	NR	4E-31	30.39794000867203	(Total cHL)	   1.82	[1.67-2.00] 	Illumina [502,514]	N
02/23/2012	22286212	Urayama KY	01/27/2012	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/22286212	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	5q15	5	96766240	ERAP1	CAST;ERAP1			831;51752			rs27524-?	rs27524	0	27524	intron;intron	0	NR	7E-6	5.154901959985742	(Total cHL)	   1.22	[1.11-1.33] 	Illumina [502,514]	N
02/23/2012	22286212	Urayama KY	01/27/2012	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/22286212	Genome-wide association study of classical Hodgkin lymphoma and Epstein-Barr virus status-defined subgroups.	Hodgkin's lymphoma	1,200 European ancestry cases, 6,417 European ancestry controls	563 European ancestry cases, 613 European ancestry controls	5q31.1	5	132660272	IL13	IL13			3596			rs20541-?	rs20541	0	20541	missense	0	NR	1E-8	8	(EBV-negative cHL)	   1.47	[1.29-1.68] 	Illumina [502,514]	N
02/21/2012	22282500	Chien JW	01/26/2012	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22282500	Evaluation of published single nucleotide polymorphisms associated with acute GVHD.	Acute graft versus host disease	1,298 Other ancestry allogenic hematopoietic cell transplantation donors and recipients	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affmyetrix [NR] (imputed)	N
02/22/2012	22291609	Naitza S	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291609	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 European ancestry individuals	1,392 European ancestry individuals	9q34.2	9	133266942	ABO	ABO			28			rs643434-A	rs643434	0	643434	intron	0	0.258	9E-25	24.04575749056067	(IL-6)	NR	NR	Affymetrix [~1.9 million] (imputed)	N
02/22/2012	22291609	Naitza S	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291609	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 European ancestry individuals	1,392 European ancestry individuals	1q32.2	1	207584170	CR1	CR1			1378			rs12034598-A	rs12034598	0	12034598	intron	0	0.408	9E-14	13.04575749056067	(ESR)	NR	NR	Affymetrix [~1.9 million] (imputed)	N
02/22/2012	22291609	Naitza S	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291609	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 European ancestry individuals	1,392 European ancestry individuals	1q23.2	1	159205564	DARC	ACKR1			2532			rs12075-A	rs12075	0	12075	missense	0	0.49	4E-51	50.39794000867204	(MCP-1)	NR	NR	Affymetrix [~1.9 million] (imputed)	N
02/22/2012	22291609	Naitza S	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291609	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 European ancestry individuals	1,392 European ancestry individuals	1q23.2	1	159177662	CADM3	CADM3			57863			rs3026968-T	rs3026968	0	3026968	intron	0	0.12	9E-14	13.04575749056067	(MCP-1)	NR	NR	Affymetrix [~1.9 million] (imputed)	N
02/22/2012	22291609	Naitza S	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291609	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 European ancestry individuals	1,392 European ancestry individuals	1q23.2	1	159721769	CRP	CRP - RPL27P2	1401	646446		        7.18	       37.38	rs1341665-A	rs1341665	0	1341665	Intergenic	1	0.963	2E-20	19.69897000433602	(hsCRP)	NR	NR	Affymetrix [~1.9 million] (imputed)	N
02/22/2012	22291609	Naitza S	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291609	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 European ancestry individuals	1,392 European ancestry individuals	1q23.2	1	159248476	DARC	ACKR1 - MPTX1	2532	649458		       41.98	       28.03	rs3845624-C	rs3845624	0	3845624	Intergenic	1	0.47	2E-11	10.69897000433602	(hsCRP)	NR	NR	Affymetrix [~1.9 million] (imputed)	N
02/22/2012	22291609	Naitza S	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291609	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 European ancestry individuals	1,392 European ancestry individuals	11p15.4	11	5285279	HBB	LCRB			387281			rs4910742-G	rs4910742	0	4910742		0	0.066	2E-9	8.698970004336019	(ESR)	NR	NR	Affymetrix [~1.9 million] (imputed)	N
02/21/2012	22291604	Okada Y	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291604	A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.	Systemic lupus erythematosus	891 Japanese ancestry cases, 3,384 Japanese ancestry controls	1,387 Japanese ancestry cases, 28,564 Japanese ancestry controls	4q21.3	4	87037243	AFF1	AFF1			4299			rs340630-A	rs340630	0	340630	intron	0	0.52	8E-9	8.096910013008056		   1.21	[1.14-1.30] 	Illumina [430,797]	N
02/21/2012	22291604	Okada Y	01/26/2012	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22291604	A genome-wide association study identified AFF1 as a susceptibility locus for systemic lupus eyrthematosus in Japanese.	Systemic lupus erythematosus	891 Japanese ancestry cases, 3,384 Japanese ancestry controls	1,387 Japanese ancestry cases, 28,564 Japanese ancestry controls	4q25	4	108125804	LEF1	LEF1			51176			rs956237-A	rs956237	0	956237	intron	0	0.33	2E-6	5.698970004336018		   1.18	[1.10-1.26] 	Illumina [430,797]	N
02/21/2012	22295056	Christie JD	01/25/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22295056	Genome wide association identifies PPFIA1 as a candidate gene for acute lung injury risk following major trauma.	Acute lung injury	600 European ancestry cases, 2,266 European ancestry controls	212 European ancestry cases, 283 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,487,415] (imputed)	N
02/09/2012	22267200	Gudmundsson J	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267200	Discovery of common variants associated with low TSH levels and thyroid cancer risk.	Thyroid cancer	27,758 European ancestry individuals	1,156 European ancestry cases, up to 42,617 European ancestry controls	2q35	2	217445617	DIRC3	DIRC3			729582			rs966423-C	rs966423	0	966423	intron	0	0.442	1E-9	8.999999999999998		   1.34	[1.22-1.47] 	Illumina [~16 million] (Imputed)	N
02/09/2012	22267200	Gudmundsson J	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267200	Discovery of common variants associated with low TSH levels and thyroid cancer risk.	Thyroid cancer	27,758 European ancestry individuals	1,156 European ancestry cases, up to 42,617 European ancestry controls	8p12	8	32574851	NRG1	NRG1			3084			rs2439302-G	rs2439302	0	2439302	intron	0	0.351	2E-9	8.698970004336019		   1.36	[1.23-1.50] 	Illumina [~16 million] (Imputed)	N
02/09/2012	22267200	Gudmundsson J	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267200	Discovery of common variants associated with low TSH levels and thyroid cancer risk.	Thyroid cancer	27,758 European ancestry individuals	1,156 European ancestry cases, up to 42,617 European ancestry controls	14q13.3	14	36269155	MBIP	PTCSC3 - MBIP	100886964	51562		       92.50	       29.40	rs116909374-T	rs116909374	0	116909374	Intergenic	1	0.017	5E-11	10.30102999566398		   2.09	[1.68-2.60] 	Illumina [~16 million] (Imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	1p34.3	1	38914713	RHBDL2	RHBDL2			54933			rs4246511-T	rs4246511	0	4246511	intron	0	0.271	9E-17	16.04575749056067		    .24	[0.18-0.3] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	1q43	1	241877473	EXO1	EXO1			9156			rs1635501-C	rs1635501	0	1635501	intron	0	0.478	8E-10	9.096910013008054		    .16	[0.11-0.22] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	2p23.3	2	27492549	FNDC4	FNDC4			64838			rs2303369-T	rs2303369	0	2303369	intron	0	0.388	2E-12	11.69897000433602		    .18	[0.13-0.22] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	2q31.1	2	171134461	TLK1	TLK1			9874			rs10183486-T	rs10183486	0	10183486	intron	0	0.366	2E-14	13.69897000433602		    .20	[0.15-0.25] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	4q21.23	4	83452469	HELQ	HELQ			113510			rs4693089-G	rs4693089	0	4693089	intron	0	0.486	2E-19	18.69897000433602		    .23	[0.18-0.28] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	5q35.2	5	176529270	RNF44	RNF44			22838			rs890835-A	rs890835	0	890835	intron	0	0.112	6E-6	5.221848749616356		    .18	[0.1-0.25] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	5q35.2	5	176951573	UIMC1	UIMC1			51720			rs365132-T	rs365132	0	365132	cds-synon	0	0.49	9E-32	31.04575749056067		    .29	[0.24-0.34] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	6p24.2	6	10897255	SYCP2L	SYCP2L			221711			rs2153157-A	rs2153157	0	2153157	intron	0	0.492	8E-12	11.09691001300806		    .17	[0.12-0.21] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	6p21.33	6	31635190	PRRC2A	PRRC2A			7916			rs1046089-A	rs1046089	0	1046089	missense	0	0.353	2E-16	15.69897000433602		    .21	[0.16-0.26] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	8p11.23	8	38120214	ASH2L	ASH2L			9070			rs2517388-G	rs2517388	0	2517388	intron	0	0.174	9E-15	14.04575749056067		    .26	[0.2-0.33] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	11p14.1	11	30361352	Intergenic	LOC102723403			102723403			rs12294104-T	rs12294104	0	12294104	ncRNA	0	0.172	1E-11	11		    .23	[0.16-0.29] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	12q13.3	12	56752285	PRIM1	PRIM1;HSD17B6			5557;8630			rs2277339-G	rs2277339	0	2277339	missense;nearGene-5	0	0.102	2E-19	18.69897000433602		    .38	[0.3-0.46] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	13q14.2	13	49732085	KPNA3	KPNA3			3839			rs3736830-G	rs3736830	0	3736830	intron	0	0.157	9E-8	7.045757490560674		    .18	[0.11-0.25] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	13q21.2	13	60539605	TDRD3	TDRD3			81550			rs4886238-A	rs4886238	0	4886238	intron	0	0.334	1E-10	10		    .17	[0.12-0.22] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	15q26.1	15	89320697	POLG	POLG			5428			rs2307449-G	rs2307449	0	2307449	intron	0	0.405	4E-13	12.39794000867204		    .18	[0.14-0.23] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	16p13.13	16	11923062	Intergenic	COX6CP1 - TNFRSF17	9384	608		       18.87	       42.05	rs10852344-C	rs10852344	0	10852344	Intergenic	1	0.415	1E-11	11		    .17	[0.12-0.22] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	19q13.42	19	55322296	TMEM150B	TMEM150B			284417			rs11668344-G	rs11668344	0	11668344	intron	0	0.363	1E-59	59		    .42	[0.37-0.47] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	19q13.43	19	55809297	NLRP11	NLRP11			204801			rs12461110-A	rs12461110	0	12461110	missense	0	0.356	9E-10	9.045757490560675		    .16	[0.11-0.21] years decrease	Affymetrix & Illumina [2,551,160] (imputed)	N
02/10/2012	22267201	Stolk L	01/22/2012	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22267201	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry females	Up to 14,435 European ancestry females	20p12.3	20	5967581	MCM8	MCM8			84515			rs16991615-A	rs16991615	0	16991615	missense	0	0.069	1E-73	73		    .95	[0.85-1.05] years increase	Affymetrix & Illumina [2,551,160] (imputed)	N
03/20/2012	22388998	Zhang CK	01/19/2012	Am J Hematol	http://www.ncbi.nlm.nih.gov/pubmed/22388998	Genome-wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation.	Gaucher disease severity	139 Ashkenazi Jewish cases	NR	8p23.3	8	1798784	CLN8	CLN8 - MIR3674	2055	100500912		       12.21	        2.34	rs11986414-A	rs11986414	0	11986414	Intergenic	1	NR	1E-6	5.999999999999999	(Gaucher disease 1 severity)	   3.72	[2.19-6.31] 	Illumina [540,902]	N
03/20/2012	22388998	Zhang CK	01/19/2012	Am J Hematol	http://www.ncbi.nlm.nih.gov/pubmed/22388998	Genome-wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation.	Gaucher disease severity	139 Ashkenazi Jewish cases	NR	10q25.3	10	113996371	ADRB1	NHLRC2 - ADRB1	374354	153		       83.87	       47.68	rs82625-?	rs82625	0	82625	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [540,902]	N
03/20/2012	22388998	Zhang CK	01/19/2012	Am J Hematol	http://www.ncbi.nlm.nih.gov/pubmed/22388998	Genome-wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation.	Gaucher disease severity	139 Ashkenazi Jewish cases	NR	15q25.3	15	88118508	NTRK3	NTRK3			4916			rs9806762-?	rs9806762	0	9806762	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [540,902]	N
02/11/2012	22279548	Sebastiani P	01/18/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22279548	Genetic signatures of exceptional longevity in humans.	Longevity	801 European ancestry long-living individuals, 914 European ancestry controls	292 European ancestry long-living individuals, 21 long-living individuals, 867 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [243,980]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	1q24.2	1	169522317	F5	F5			2153			rs2420371-G	rs2420371	0	2420371	intron	0	0.18	4E-80	79.39794000867202	(ACVn ratio)	   1.16	[1.04-1.28] unit decrease	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	20q11.22	20	35176751	PROCR	PROCR			10544			rs867186-G	rs867186	0	867186	missense	0	0.10	2E-6	5.698970004336018	(ACVn ratio)	    .37	[0.21-0.53] unit increase	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	4p16.3	4	741362	PCGF3	PCGF3			10336			rs4234853-A	rs4234853	0	4234853	intron	0	0.27	6E-6	5.221848749616356	(PS levels)	   4.88	[2.76-7.00] iu/ml decrease	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	10q26.13	10	124455610	LHPP	NKX1-2 - LHPP	390010	64077		        5.63	        6.16	rs2459210-T	rs2459210	0	2459210	Intergenic	1	0.34	9E-6	5.045757490560675	(PS levels)	   4.35	[2.43-6.27] iu/ml increase	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	12q24.23	12	118455443	SUDS3	SUDS3 - RPL17P37	64426	100271411		       37.41	      282.48	rs11613092-T	rs11613092	0	11613092	Intergenic	1	0.08	6E-6	5.221848749616356	(PS levels)	   8.16	[4.63-11.69] iu/ml increase	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	14q21.1	14	41054257	LRFN5	LOC644919			644919			rs1959947-A	rs1959947	0	1959947	intron	0	0.27	7E-6	5.154901959985742	(PS levels)	   4.76	[2.68-6.84] iu/ml increase	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	3q13.13	3	108524704	MYH15	MYH15			22989			rs2603127-A	rs2603127	0	2603127	intron	0	0.25	5E-6	5.301029995663981	(AT levels)	   2.79	[1.59-3.99] iu/ml increase	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	11p11.2	11	44581778	CD82	CD82			3732			rs730129-T	rs730129	0	730129	intron	0	0.30	7E-6	5.154901959985742	(AT levels)	   2.55	[1.43-3.67] iu/ml decrease	Illumina [472,123]	N
04/25/2012	22443383	Oudot-Mellakh T	01/16/2012	Br J Haematol	http://www.ncbi.nlm.nih.gov/pubmed/22443383	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NR	20q11.22[rs17310467]; 20q11.22[rs6088735]			GSS, EDEM2, PROCR	 - 						4-SNP haplotype	rs17310467, rs6088735, rs6060278, rs867186					0.105	4E-34		(PC levels)	  19.27	[16.174-22.372] iu/ml increase (GCTG)	Illumina [472,123]	N
02/10/2012	22239941	Png E	01/13/2012	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22239941	A genome wide association study of pulmonary tuberculosis susceptibility in Indonesians.	Tuberculosis	108 Indonesian ancestry cases, 115 Indonesian ancestry controls	600 Indonesian ancestry cases, 540 Indonesian ancestry controls, 1,837 European ancestry cases, 1,779 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [95,207]	N
02/09/2012	22247754	Murray SS	01/11/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22247754	Genome-wide association of implantable cardioverter-defibrillator activation with life-threatening arrhythmias.	Life threatening arrhythmia	607 European ancestry cases, 297 European ancestry controls	NR	15q13.1	15	29439240	KIAA0574	FAM189A1			23359			rs11856574-G	rs11856574	0	11856574	intron	0	0.86	5E-6	5.301029995663981		   2.02	 	Illumina [NR] (imputed)	N
02/09/2012	22247754	Murray SS	01/11/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22247754	Genome-wide association of implantable cardioverter-defibrillator activation with life-threatening arrhythmias.	Life threatening arrhythmia	607 European ancestry cases, 297 European ancestry controls	NR	1q42.3	1	234680808	IRF2BP2	LINC00184 - LINC01132	100302691	100506810		       46.03	       43.23	rs482329-C	rs482329	0	482329	Intergenic	1	0.61	6E-6	5.221848749616356		   1.60	 	Illumina [NR] (imputed)	N
02/02/2012	22233651	Kwak SH	01/10/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22233651	A genome-wide association study of gestational diabetes mellitus in Korean women.	Diabetes (gestational)	468 Korean ancestry cases, 1,242 Korean ancestry controls	931 Korean ancestry cases, 783 Korean ancestry controls	6p22.3	6	20661019	CDKAL1	CDKAL1			54901			rs7754840-C	rs7754840	0	7754840	intron	0	0.445	7E-16	15.15490195998574		   1.52	[1.372-1.680] 	Affymetrix [2,188,613](imputed)	N
02/02/2012	22233651	Kwak SH	01/10/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22233651	A genome-wide association study of gestational diabetes mellitus in Korean women.	Diabetes (gestational)	468 Korean ancestry cases, 1,242 Korean ancestry controls	931 Korean ancestry cases, 783 Korean ancestry controls	11q14.3	11	92965261	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      466.30	        4.36	rs10830962-G	rs10830962	0	10830962	Intergenic	1	0.430	2E-13	12.69897000433602		   1.45	[1.315-1.608] 	Affymetrix [2,188,613](imputed)	N
02/02/2012	22233651	Kwak SH	01/10/2012	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/22233651	A genome-wide association study of gestational diabetes mellitus in Korean women.	Diabetes (gestational)	468 Korean ancestry cases, 1,242 Korean ancestry controls	931 Korean ancestry cases, 783 Korean ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	0.293	2E-7	6.698970004336019		   1.33	[1.197-1.484] 	Affymetrix [2,188,613](imputed)	N
02/08/2012	22229870	Karns R	01/09/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22229870	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NR	4p16.1	4	9925343	SLC2A9, WDR1	SLC2A9			56606			rs13129697-G	rs13129697	0	13129697	intron	0	0.36	2E-19	18.69897000433602		  28.99	[NR] umol/L decrease	Affymetrix [2,241,249] (imputed)	N
02/08/2012	22229870	Karns R	01/09/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22229870	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NR	5p15.31	5	8652758	SEMA5A	MIR4458 - SEMA5A	100616142	9037		      191.76	      382.27	rs200113-C	rs200113	0	200113	Intergenic	1	0.10	7E-8	7.154901959985742		  28.59	[NR] umol/L increase	Affymetrix [2,241,249] (imputed)	N
02/08/2012	22229870	Karns R	01/09/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22229870	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NR	2p25.3	2	663483	TMEM18	FAM150B - TMEM18	285016	129787		      374.62	        4.49	rs12999373-A	rs12999373	0	12999373	Intergenic	1	0.27	2E-6	5.698970004336018		  17.65	[NR] umol/L decrease	Affymetrix [2,241,249] (imputed)	N
02/08/2012	22229870	Karns R	01/09/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22229870	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NR	15q21.1	15	45207849	SLC28A2	TRNAH6 - SLC28A2	100189065	9153		        6.63	       44.38	rs765787-G	rs765787	0	765787	Intergenic	1	0.15	3E-6	5.522878745280337		  20.90	[NR] umol/L increase	Affymetrix [2,241,249] (imputed)	N
02/08/2012	22229870	Karns R	01/09/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22229870	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NR	5q34	5	168073455	ODZ2	TENM2			57451			rs13358864-A	rs13358864	0	13358864	intron	0	0.10	5E-6	5.301029995663981		  24.09	[NR] umol/L decrease	Affymetrix [2,241,249] (imputed)	N
02/08/2012	22229870	Karns R	01/09/2012	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22229870	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NR	4q22.1	4	88131171	ABCG2	ABCG2			9429			rs2231142-T	rs2231142	0	2231142	missense	0	0.08	5E-6	5.301029995663981		  27.40	[NR]  umol/L increase	Affymetrix [2,241,249] (imputed)	N
02/14/2012	22232737	Shu XO	01/09/2012	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22232737	Novel genetic markers of breast cancer survival identified by a genome-wide association study.	Breast cancer (survival)	1,950 Chinese ancestry cases	4,160 Chinese ancestry cases	14q24.1	14	68283210	RAD51L1	RAD51B			5890			rs3784099-A	rs3784099	0	3784099	intron	0	NR	1E-7	7	(Total Mortality)	   1.49	[1.28-1.72] 	Affymetrix [613,031]	N
02/14/2012	22232737	Shu XO	01/09/2012	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22232737	Novel genetic markers of breast cancer survival identified by a genome-wide association study.	Breast cancer (survival)	1,950 Chinese ancestry cases	4,160 Chinese ancestry cases	14q24.1	14	68283210	RAD51L1	RAD51B			5890			rs3784099-A	rs3784099	0	3784099	intron	0	NR	3E-7	6.522878745280337	(Recurrence)	   1.43	[1.25-1.64] 	Affymetrix [613,031]	N
02/14/2012	22232737	Shu XO	01/09/2012	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22232737	Novel genetic markers of breast cancer survival identified by a genome-wide association study.	Breast cancer (survival)	1,950 Chinese ancestry cases	4,160 Chinese ancestry cases	16q22.3	16	73405456	Intergenic	LOC100506172			100506172			rs9934948-C	rs9934948	0	9934948	intron	0	NR	6E-6	5.221848749616356	(Total Mortality)	   1.29	[1.16-1.44] 	Affymetrix [613,031]	N
02/24/2012	22245343	Meda SA	01/08/2012	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/22245343	A large scale multivariate parallel ICA method reveals novel imaging-genetic relationships for Alzheimer's disease in the ADNI cohort.	Alzheimer's disease	367 European ancestry individuals with mild cognitive impairment, 181 European ancestry individuals  with mild, early-stage LOAD, 209 European ancestry controls	NR	NR			APOE	 - 						APOE-E4	NR					NR	7E-16			NR	NR	Illumina [533,872]	N
02/24/2012	22245343	Meda SA	01/08/2012	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/22245343	A large scale multivariate parallel ICA method reveals novel imaging-genetic relationships for Alzheimer's disease in the ADNI cohort.	Alzheimer's disease	367 European ancestry individuals with mild cognitive impairment, 181 European ancestry individuals  with mild, early-stage LOAD, 209 European ancestry controls	NR	NR			APOE	 - 						APOE-E3	NR					NR	4E-9			NR	NR	Illumina [533,872]	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	10p15.1	10	5995763	IL2RA	IL15RA - IL2RA	3601	3559		       17.19	       14.93	rs7911500-?	rs7911500	0	7911500	Intergenic	1	NR	5E-9	8.301029995663981	(hsCRP-IL6 pattern prefenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	7p14.1	7	42286026	Intergenic	HMGN2P30 - TCP1P1	100131183	647047		      171.58	      508.88	rs12532960-?	rs12532960	0	12532960	Intergenic	1	NR	3E-7	6.522878745280337	(hsCRP-IL6 pattern prefenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	2p24.1	2	19799585	Intergenic	OSR1 - CISD1P1	130497	130500		      440.97	       26.63	rs6728440-?	rs6728440	0	6728440	Intergenic	1	NR	2E-7	6.698970004336019	(hsCRP-IL6 pattern postfenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	19p13.12	19	15613392	CYP4F8	CYP4F8			11283			rs3764563-?	rs3764563	0	3764563	nearGene-5	0	NR	3E-7	6.522878745280337	(MCP1-TNF-a pattern prefenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	10p12.1	10	26485765	APBB1IP	APBB1IP			54518			rs786870-?	rs786870	0	786870	intron	0	NR	5E-7	6.30102999566398	(MCP1-TNF-a pattern prefenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	2p24.1	2	19758735	Intergenic	OSR1 - CISD1P1	130497	130500		      400.12	       67.48	rs17564315-?	rs17564315	0	17564315	Intergenic	1	NR	7E-7	6.154901959985743	(MCP1-TNF-a pattern prefenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	5q23.1	5	116176655	COMMD10	COMMD10			51397			rs1396485-?	rs1396485	0	1396485	intron	0	NR	7E-7	6.154901959985743	(MCP1-TNF-a pattern prefenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	10p15.1	10	6011200	IL2RA	IL2RA			3559			rs12722605-?	rs12722605	0	12722605	UTR-3	0	NR	3E-7	6.522878745280337	(MCP1-TNF-a pattern postfenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	11p12	11	36990987	Intergeic	C11orf74 - RPL7AP56	119710	100271536		      317.71	      734.66	rs391317-?	rs391317	0	391317	Intergenic	1	NR	5E-7	6.30102999566398	(MCP1-TNF-a pattern postfenofibrate)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	4p15.33	4	13100727	Intergenic	RNA5SP156 - HSP90AB2P	100873422	391634		     1686.57	      235.66	rs13122273-?	rs13122273	0	13122273	Intergenic	1	NR	9E-7	6.045757490560675	(C-reactive protein)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	14q13.1	14	33117357	NPAS3	NPAS3			64067			rs17460823-?	rs17460823	0	17460823	intron	0	NR	2E-6	5.698970004336018	(C-reactive protein)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	1p32.3	1	55595278	Intergenic	GOT2P1 - RPSAP20	645538	127406		      226.50	      612.19	rs10888935-?	rs10888935	0	10888935	Intergenic	1	NR	7E-7	6.154901959985743	(Interleukin-6)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	2q14.1	2	114292241	Intergenic	SEPHS1P7 - DPP10	391428	57628		       31.40	      150.08	rs4513299-?	rs4513299	0	4513299	Intergenic	1	NR	4E-6	5.397940008672037	(Interleukin-6)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	21q22.11	21	33170482	Intergenic	C21orf54			728409			rs6517147-?	rs6517147	0	6517147	nearGene-5	0	NR	7E-7	6.154901959985743	(Interleukin-2 soluble receptor-a)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	18q23	18	77941567	Intergenic	BDP1P - LINC01029	724038	101927715		      504.32	       29.73	rs11661856-?	rs11661856	0	11661856	Intergenic	1	NR	1E-6	5.999999999999999	(Interleukin-2 soluble receptor-a)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	11p15.2	11	14076935	SPON1	SPON1			10418			rs17556665-?	rs17556665	0	17556665	intron	0	NR	1E-6	5.999999999999999	(Tumor necrosis factor-a)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	7q32.1	7	129353915	AHCYL2	AHCYL2			23382			rs11979476-?	rs11979476	0	11979476	intron	0	NR	2E-6	5.698970004336018	(Tumor necrosis factor-a)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	10q11.23	10	49368588	DRGX	DRGX			644168			rs12220898-?	rs12220898	0	12220898	intron	0	NR	1E-6	5.999999999999999	(Monocyte chemoattractant protein-1)	NR	NR	Affymetrix [2,543,887](imputed)	N
03/10/2012	22228203	Aslibekyan S	01/05/2012	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/22228203	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NR	8q24.23	8	138243675	FAM135B	FAM135B			51059			rs4909764-?	rs4909764	0	4909764	intron	0	NR	2E-6	5.698970004336018	(Monocyte chemoattractant protein-1)	NR	NR	Affymetrix [2,543,887](imputed)	N
02/07/2012	22238593	Palmer ND	01/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22238593	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	1p21.3	1	94604485	SLC44A3, F3	F3 - KATNBL1P2	2152	100130235		       62.63	       46.07	rs7542900-C	rs7542900	0	7542900	Intergenic	1	0.56	6E-6	5.221848749616356		   1.16	[1.09-1.25] 	Affymetrix [832,357]	N
02/07/2012	22238593	Palmer ND	01/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22238593	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	2q23.3	2	150781422	RBM43, RND3	RND3 - FABP5P10	390	344332		      293.73	      404.74	rs7560163-C	rs7560163	0	7560163	Intergenic	1	0.86	7E-9	8.154901959985743		   1.33	[1.19-1.49] 	Affymetrix [832,357]	N
02/07/2012	22238593	Palmer ND	01/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22238593	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	11p15.3	11	11206827	GALNTL4, LOC729013	HMGN1P22 - MTND5P21	100874460	100873354		       24.54	       33.03	rs2722769-C	rs2722769	0	2722769	Intergenic	1	0.53	2E-6	5.698970004336018		   1.35	[1.19-1.54] 	Affymetrix [832,357]	N
02/07/2012	22238593	Palmer ND	01/04/2012	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22238593	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	11q24.3	11	129603795	TMEM45B, BARX2	RPS27P20 - TMEM45B	100271581	120224		       65.62	      212.05	rs7107217-C	rs7107217	0	7107217	Intergenic	1	0.91	3E-7	6.522878745280337		   1.18	[1.10-1.27] 	Affymetrix [832,357]	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	15q21.1	15	48747600	CEP152	CEP152			22995			rs784411-?	rs784411	0	784411	intron	0	NR	1E-7	7	(rs12418451)	   1.42	[1.25-1.61] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	8q21.12	8	78044423	PKIA	HIGD1AP18 - PKIA	100874456	5569		     1030.37	      471.68	rs2219968-?	rs2219968	0	2219968	Intergenic	1	NR	6E-7	6.221848749616355	(rs1571801)	   1.30	[1.17-1.43] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	10p14	10	12009817	UPF2	UPF2			26019			rs10795917-?	rs10795917	0	10795917	intron	0	NR	7E-7	6.154901959985743	(rs8102476)	   1.24	[1.14-1.36] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	12q13.11	12	48417317	ANP32D	LOC102723866			102723866			rs4489787-?	rs4489787	0	4489787	intron	0	NR	1E-6	5.999999999999999	(rs4430796)	   1.47	[1.25-1.72] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	3p14.3	3	57409039	DNAH12	DNAH12			201625			rs1916284-?	rs1916284	0	1916284	intron	0	NR	1E-6	5.999999999999999	(rs12418451)	   1.27	[1.15-1.41] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	7q22.1	7	98391899	BAIAP2L1	BAIAP2L1			55971			rs9649213-?	rs9649213	0	9649213	intron	0	NR	1E-6	5.999999999999999	(rs4962416)	   1.28	[1.16-1.42] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	14q11.2	14	20556460	RNASE9	RNASE9			390443			rs1243647-?	rs1243647	0	1243647	missense	0	NR	1E-6	5.999999999999999	(rs12418451)	   1.33	[1.19-1.49] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	9q22.2	9	90793457	SYK	OR7E108P - SYK	81363	6850		       41.22	        8.27	rs290258-?	rs290258	0	290258	Intergenic	1	NR	1E-6	5.999999999999999	(rs7679673)	   1.33	[1.19-1.49] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	9p24.1	9	8012418	C9orf123	TMEM261 - PTPRD	90871	5789		      212.62	      301.83	rs12682851-?	rs12682851	0	12682851	Intergenic	1	NR	2E-6	5.698970004336018	(rs1447295)	   1.39	[1.22-1.59] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	6p22.1	6	29734733	LOC285830	HLA-F;HLA-F-AS1			3134;285830			rs2523395-?	rs2523395	0	2523395	intron;intron	0	NR	2E-6	5.698970004336018	(rs1512268)	   1.24	[1.14-1.35] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	4q25	4	113079800	ANK2	ANK2			287			rs7694725-?	rs7694725	0	7694725	intron	0	NR	2E-6	5.698970004336018	(rs10086908)	   1.36	[1.20-1.55] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	15q26.2	15	96459423	NR2F2	RPL31P55 - FAM149B1P1	100128250	388181		       10.89	      297.56	rs11637980-?	rs11637980	0	11637980	Intergenic	1	NR	2E-6	5.698970004336018	(rs1447295)	   1.47	[1.27-1.72] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	3p25.2	3	12510308	TSEN2	TSEN2			80746			rs6766510-?	rs6766510	0	6766510	intron	0	NR	2E-6	5.698970004336018	(rs10993994)	   1.58	[1.31-1.91] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	4p16.2	4	5757142	EVC	EVC			2121			rs735172-?	rs735172	0	735172	intron	0	NR	2E-6	5.698970004336018	(rs887391)	   1.31	[1.17-1.46] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	12q13.11	12	46978487	AMIGO2	SLC38A4 - AMIGO2	55089	347902		      146.07	       97.22	rs2711721-?	rs2711721	0	2711721	Intergenic	1	NR	2E-6	5.698970004336018	(rs5759167)	   1.28	[1.16-1.42] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	5p15.2	5	13505322	DNAH5	RPS23P5 - RPL29P13	100271093	391738		      254.66	      132.47	rs4463179-?	rs4463179	0	4463179	Intergenic	1	NR	2E-6	5.698970004336018	(rs887391)	   1.56	[1.3-1.89] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	14q32.31	14	101260770	MIR656	MEG9 - DIO3OS	100507257	64150		      187.83	      291.45	rs2400997-?	rs2400997	0	2400997	Intergenic	1	NR	3E-6	5.522878745280337	(rs10934853)	   1.25	[1.14-1.38] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	3p26.3	3	108303	CHL1	A1BG - CHL1		10752			       88.29	rs12485321-?	rs12485321	0	12485321	Intergenic	1	NR	3E-6	5.522878745280337	(rs6465657)	   1.23	[1.14-1.35] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	13q31.3	13	90213292	MIR622	FAR1P1 - KRT18P27	100128011	390418		       41.39	       17.04	rs16944141-?	rs16944141	0	16944141	Intergenic	1	NR	3E-6	5.522878745280337	(rs1512268)	   1.54	[1.28-1.85] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	6q22.31	6	122961796	CLVS2	ATP5LP2 - CLVS2	53410	134829		      101.78	       34.18	rs13192613-?	rs13192613	0	13192613	Intergenic	1	NR	3E-6	5.522878745280337	(rs11649743)	   1.37	[1.20-1.56] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	3q13.2	3	112779033	CD200R1L	CCDC80 - CD200R1L	151887	344807		      137.89	       36.68	rs1002979-?	rs1002979	0	1002979	Intergenic	1	NR	3E-6	5.522878745280337	(rs12621278)	   1.59	[1.32-1.92] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	2q31.3	2	180176559	CWC22	CWC22 - SCHLAP1	57703	101669767		      169.26	      515.55	rs16867225-?	rs16867225	0	16867225	Intergenic	1	NR	3E-6	5.522878745280337	(rs1859962)	   1.56	[1.3-1.89] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	20q13.33	20	63037684	LOC63930	LOC63930;LINC00029;LINC01056			63930;100144596;100144597			rs6089829-?	rs6089829	0	6089829	intron;nearGene-5;nearGene-5	0	NR	3E-6	5.522878745280337	(rs2735839)	   1.35	[1.19-1.54] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	7p14.1	7	40925528	INHBA	SUGCT - INHBA	79783	3624		       64.76	      763.48	rs7789197-?	rs7789197	0	7789197	Intergenic	1	NR	3E-6	5.522878745280337	(rs1447295)	   1.52	[1.27-1.79] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	5q13.1	5	67537429	CD180	CD180 - RPL21P55	4064	100271170		      340.64	       71.18	rs7717572-?	rs7717572	0	7717572	Intergenic	1	NR	3E-6	5.522878745280337	(rs2660753)	   1.94	[1.47-2.56] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	22q13.1	22	40258272	TNRC6B	TNRC6B			23112			rs12628051-?	rs12628051	0	12628051	intron	0	NR	3E-6	5.522878745280337	(rs7127900)	   1.30	[1.17-1.46] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	8q21.13	8	82161594	SNX16	HNRNPA1P36 - HNRNPA1P4	100128836	389674		      352.66	      129.31	rs13264970-?	rs13264970	0	13264970	Intergenic	1	NR	4E-6	5.397940008672037	(rs1571801)	   1.30	[1.16-1.45] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	8q24.13	8	123702482	ANXA13	ANXA13			312			rs13258681-?	rs13258681	0	13258681	intron	0	NR	4E-6	5.397940008672037	(rs7127900)	   1.32	[1.17-1.48] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	2q33.1	2	198304372	PLCL1	LOC101927619			101927619			rs13398206-?	rs13398206	0	13398206	intron	0	NR	4E-6	5.397940008672037	(rs10896449)	   1.24	[1.13-1.36] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	10q25.3	10	114567791	ABLIM1	ABLIM1			3983			rs10885582-?	rs10885582	0	10885582	intron	0	NR	4E-6	5.397940008672037	(rs1447295)	   1.37	[1.20-1.59] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	12q21.31	12	82770777	TMTC2	TMTC2			160335			rs12317459-?	rs12317459	0	12317459	intron	0	NR	4E-6	5.397940008672037	(rs16901979)	   2.06	[1.52-2.80] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	5q11.2	5	57834991	ACTBL2	ACTBL2 - PGAM1P1	345651	100130514		      352.18	      326.21	rs10940579-?	rs10940579	0	10940579	Intergenic	1	NR	4E-6	5.397940008672037	(rs4962416)	   1.32	[1.18-1.49] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	7q31.1	7	109363517	C7orf66	C7orf66 - EIF3IP1	154907	442720		      478.94	      595.71	rs10277209-?	rs10277209	0	10277209	Intergenic	1	NR	4E-6	5.397940008672037	(rs1859962)	   1.36	[1.19-1.55] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	9q33.1	9	115068533	TNC	TNC			3371			rs7847271-?	rs7847271	0	7847271	intron	0	NR	4E-6	5.397940008672037	(rs10934853)	   1.49	[1.27-1.79] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	3p26.3	3	1470903	CNTN6	CNTN6 - RPL23AP38	27255	391504		       67.29	      124.83	rs6763848-?	rs6763848	0	6763848	Intergenic	1	NR	4E-6	5.397940008672037	(rs9623117)	   1.30	[1.16-1.45] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	13q14.11	13	44063269	NCRNA00284	LINC00284 - SMIM2-AS1	121838	101929212		       32.81	       47.28	rs9567349-?	rs9567349	0	9567349	Intergenic	1	NR	4E-6	5.397940008672037	(rs1465618)	   1.64	[1.33-2.04] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	15q14	15	34776108	ACTC1	LOC101928174			101928174			rs543686-?	rs543686	0	543686	intron	0	NR	4E-6	5.397940008672037	(rs6983267)	   1.24	[1.13-1.35] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	22q12.1	22	27456222	MN1	RPL15P22 - MN1	100130624	4330		      568.64	      292.06	rs6005451-?	rs6005451	0	6005451	Intergenic	1	NR	4E-6	5.397940008672037	(rs445114)	   1.42	[1.22-1.65] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	22q11.22	22	22490916	ZNF280B	ZNF280B			140883			rs5751168-?	rs5751168	0	5751168	intron	0	NR	4E-6	5.397940008672037	(rs7679673)	   1.44	[1.23-1.67] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	18q12.1	18	33347811	C18orf34	CCDC178			374864			rs6507016-?	rs6507016	0	6507016	intron	0	NR	4E-6	5.397940008672037	(rs5945619)	   1.28	[1.15-1.41] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	22q13.1	22	40279087	TNRC6B	TNRC6B			23112			rs4821941-?	rs4821941	0	4821941	intron	0	NR	4E-6	5.397940008672037	(rs7127900)	   1.30	[1.16-1.46] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	2q13	2	111039954	ACOXL	ACOXL			55289			rs3789080-?	rs3789080	0	3789080	intron	0	NR	4E-6	5.397940008672037	(rs7127900)	   1.41	[1.22-1.64] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	11p15.2	11	15333700	INSC	INSC - SOX6	387755	55553		       86.49	      632.75	rs11605083-?	rs11605083	0	11605083	Intergenic	1	NR	4E-6	5.397940008672037	(rs7679673)	   1.28	[1.15-1.43] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	1p34.3	1	37731169	EPHA10	EPHA10			284656			rs731174-?	rs731174	0	731174	intron	0	NR	5E-6	5.301029995663981	(rs4430796)	   1.27	[1.15-1.40] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	16q12.1	16	49360365	C16orf78	CBLN1 - C16orf78	869	123970		       78.53	       13.53	rs8057939-?	rs8057939	0	8057939	Intergenic	1	NR	5E-6	5.301029995663981	(rs6465657)	   1.37	[1.20-1.57] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	3p12.1	3	86845328	VGLL3	PRKRIRP2 - VGLL3	100422711	389136		      830.01	       92.65	rs9757252-?	rs9757252	0	9757252	Intergenic	1	NR	5E-6	5.301029995663981	(rs17021918)	   1.25	[1.13-1.37] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	6p22.3	6	17813594	KIF13A	KIF13A			63971			rs10456809-?	rs10456809	0	10456809	intron	0	NR	5E-6	5.301029995663981	(rs10086908)	   1.25	[1.14-1.38] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	3q26.31	3	173125487	SPATA16	SPATA16			83893			rs11720607-?	rs11720607	0	11720607	intron	0	NR	5E-6	5.301029995663981	(rs10486567)	   1.37	[1.20-1.59] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	6q12	6	68584593	BAI3	RNA5SP208 - BAI3	100873468	577		     1117.29	       50.73	rs9351730-?	rs9351730	0	9351730	Intergenic	1	NR	5E-6	5.301029995663981	(rs9364554)	   1.25	[1.13-1.37] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	1p35.3	1	29712815	PTPRU	PTPRU - MATN1	10076	4146		      386.00	      998.46	rs1866967-?	rs1866967	0	1866967	Intergenic	1	NR	5E-6	5.301029995663981	(rs8102476)	   1.22	[1.12-1.33] 	Affymetrix & Illumina [1,117,531] (imputed)	N
03/31/2012	22219177	Tao S	01/04/2012	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/22219177	A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.	Prostate cancer (gene x gene interaction)	4,723 European ancestry cases, 4,792 European ancestry controls	NA	18q12.3	18	45145697	MIR4319	MIR4319 - SLC14A2	100422829	8170		      175.53	       67.29	rs998124-?	rs998124	0	998124	Intergenic	1	NR	5E-6	5.301029995663981	(rs10934853)	   1.33	[1.18-1.51] 	Affymetrix & Illumina [1,117,531] (imputed)	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	1q23.3	1	160776286	Intergenic	SLAMF7 - LY9	57823	4063		       21.47	       19.79	rs576523-?	rs576523	0	576523	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	NR			PDE4DIP	 - 						rs2863344-?	rs2863344					NR	2E-6			NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	1p31.1	1	75304940	SLC44A5	SLC44A5			204962			rs1249675-?	rs1249675	0	1249675	intron	0	NR	7E-6	5.154901959985742		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	2q14.2	2	121054648	Intergenic	GLI2 - TFCP2L1	2736	29842		       62.00	      161.94	rs4848143-?	rs4848143	0	4848143	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	3p14.2	3	59368432	Intergenic	C3orf67-AS1 - FHIT	101929238	2272		      349.34	      380.88	rs6771019-?	rs6771019	0	6771019	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	3q26.1	3	163116513	Intergenic	RPS6P4 - LINC01192	100131548	647107		         .36	       60.73	rs9824150-?	rs9824150	0	9824150	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	4q32.3	4	166534341	Intergenic	RNA5SP170 - SPOCK3	100873435	50859		      481.05	      199.04	rs11941399-?	rs11941399	0	11941399	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	4q22.3	4	94232198	SMARCAD1	SMARCAD1			56916			rs3106136-?	rs3106136	0	3106136	intron	0	NR	7E-6	5.154901959985742		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	5p15.31	5	7649747	ADCY2, MTRR	ADCY2			108			rs4702484-?	rs4702484	0	4702484	intron	0	NR	6E-7	6.221848749616355		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	6p21.33	6	31440488	Intergenic	LINC01149			101929111			rs2524276-?	rs2524276	0	2524276	nearGene-5	0	NR	6E-6	5.221848749616356		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	6q14.1	6	76581082	LOC643281	IMPG1 - HTR1B	3617	3351		      508.40	      881.15	rs12198063-?	rs12198063	0	12198063	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	NR	7		Intergenic	 - 						rs361433-?	rs361433		361433			NR	9E-7			NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	7p21.3	7	10325096	Intergenic	PER4 - HSPA8P8	168741	100287551		      689.28	      126.14	rs2882834-?	rs2882834	0	2882834	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	7p15.3	7	21183171	Intergenic	RPS26P30 - ASS1P11	100271111	340274		      339.20	       36.81	rs6971109-?	rs6971109	0	6971109	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	10p15.2	10	3616727	Intergenic	PITRM1-AS1 - KLF6	100507034	1316		      468.10	      159.27	rs705469-?	rs705469	0	705469	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	10q23.1	10	80617834	SH2D4B	SH2D4B			387694			rs6586111-?	rs6586111	0	6586111	intron	0	NR	7E-6	5.154901959985742		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	10p15.2	10	3625534	Intergenic	PITRM1-AS1 - KLF6	100507034	1316		      476.91	      150.46	rs705471-?	rs705471	0	705471	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	11p15.2	11	16018629	SOX6	SOX6			55553			rs16932455-?	rs16932455	0	16932455	intron	0	NR	2E-6	5.698970004336018		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	13q12.11	13	20162077	Intergenic	GJA3			2700			rs6490525-?	rs6490525	0	6490525	nearGene-5	0	NR	4E-6	5.397940008672037		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	18q12.2	18	35517996	Intergenic	INO80C - MIR3975	125476	100616257		       19.85	       73.74	rs9953852-?	rs9953852	0	9953852	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	19p12	19	21773334	Intergenic	ZNF100 - ZNF43	163227	7594		        5.71	       31.62	rs8101143-?	rs8101143	0	8101143	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	NR [~2 million]	N
10/16/2012	22864933	O'Donnell PH	01/03/2012	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22864933	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	5p15.31	5	7649747	ADCY2, MTRR	ADCY2			108			rs4702484-?	rs4702484	0	4702484	intron	0	NR	5E-8	7.30102999566398	(European ancestry)	NR	NR	NR [~2 million]	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	20p13	20	4699605	PRNP	PRNP			5621			rs1799990-?	rs1799990	0	1799990	missense	0	NR	7E-7	6.154901959985743		   1.30	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	3q23	3	141359346	ZBTB38, RASA2	ZBTB38			253461			rs9857275-?	rs9857275	0	9857275	intron	0	NR	2E-6	5.698970004336018		   1.28	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	7q21.11	7	84281955	SEMA3A	SEMA3A			10371			rs488333-?	rs488333	0	488333	intron	0	NR	3E-6	5.522878745280337		   1.27	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	10q25.1	10	107810092	NR	RNA5SP326 - MAPKAPK5P1	100873592	100533849		      348.42	     1038.11	rs12570947-?	rs12570947	0	12570947	Intergenic	1	NR	4E-6	5.397940008672037		   1.45	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	4q21.1	4	75407765	NR	PARM1 - RCHY1	25849	25898		      357.65	       71.27	rs2903698-?	rs2903698	0	2903698	Intergenic	1	NR	6E-6	5.221848749616356		   1.25	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	10q22.1	10	70767761	NR	ADAMTS14 - TBATA	140766	219793		        5.32	        3.47	rs12761224-?	rs12761224	0	12761224	Intergenic	1	NR	6E-6	5.221848749616356		   1.39	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	5q35.2	5	173932328	NR	CPEB4			80315			rs17763373-?	rs17763373	0	17763373	intron	0	NR	7E-6	5.154901959985742		   1.51	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	3p21.31	3	48445644	NR	ATRIP			84126			rs730566-?	rs730566	0	730566	nearGene-5	0	NR	7E-6	5.154901959985742		   1.27	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	8p23.1	8	8864868	NR	MFHAS1			9258			rs10108954-?	rs10108954	0	10108954	intron	0	NR	7E-6	5.154901959985742		   1.74	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	19q13.2	19	41167943	NR	CYP2T3P - RPL36P16	163007	651600		       30.59	        2.02	rs8105815-?	rs8105815	0	8105815	Intergenic	1	NR	8E-6	5.096910013008055		   1.39	[NR] 	Illumina [NR] (imputed)	N
01/20/2012	22210626	Mead S	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22210626	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinea cases, 286 Papua New Guinea controls.	NR	8q22.2	8	98117279	NR	HRSP12;POP1			10247;10940			rs2071598-?	rs2071598	0	2071598	nearGene-5;nearGene-5	0	NR	9E-6	5.045757490560675		   1.26	[NR] 	Illumina [NR] (imputed)	N
01/10/2012	22171074	Tan A	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22171074	A genome-wide association and gene-environment interaction study for serum triglycerides levels in a healthy Chinese male population.	Triglycerides	1,999 Chinese ancestry individuals	1,496 Chinese ancestry individuals.	8p21.3	8	19962213	LPL	LPL			4023			rs328-?	rs328	0	328	STOP-GAIN	0	NR	1E-9	8.999999999999998		NR	NR	Illumina [1,940,243] (imputed)	N
01/10/2012	22171074	Tan A	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22171074	A genome-wide association and gene-environment interaction study for serum triglycerides levels in a healthy Chinese male population.	Triglycerides	1,999 Chinese ancestry individuals	1,496 Chinese ancestry individuals.	11q23.3	11	116791863	APOA5	APOA5			116519			rs651821-?	rs651821	0	651821	UTR-5	0	NR	9E-26	25.04575749056067		NR	NR	Illumina [1,940,243] (imputed)	N
01/10/2012	22171074	Tan A	12/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22171074	A genome-wide association and gene-environment interaction study for serum triglycerides levels in a healthy Chinese male population.	Triglycerides	1,999 Chinese ancestry individuals	1,496 Chinese ancestry individuals.	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-?	rs671	0	671	missense	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [1,940,243] (imputed)	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	20q11.22	20	35176751	PROCR	PROCR			10544			rs867186-G	rs867186	0	867186	missense	0	0.077	4E-9	8.397940008672036	(PC)	    .85	[NR]  SD units	Illumina [283,437]	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	7p14.2	7	36921715	ELMO1	ELMO1			9844			rs13230047-?	rs13230047	0	13230047	intron	0	NR	8E-6	5.096910013008055	(PC)	NR	NR	Illumina [283,437]	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	14q22.1	14	51610371	FRMD6	FRMD6			122786			rs1006973-?	rs1006973	0	1006973	intron	0	NR	8E-6	5.096910013008055	(PC)	NR	NR	Illumina [283,437]	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	1p31.3	1	65349976	DNAJC6	DNAJC6			9829			rs1413885-C	rs1413885	0	1413885	intron	0	0.322	3E-7	6.522878745280337	(fPS)	    .43	[NR] SD units	Illumina [283,437]	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	15q24.3	15	77559193	LRRN6A	HMG20A - LINGO1	10363	84894		       73.59	       53.83	rs2137111-?	rs2137111	0	2137111	Intergenic	1	NR	7E-6	5.154901959985742	(fPS)	NR	NR	Illumina [283,437]	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	4p13	4	43535583	KCTD8	RPS2P21 - PGBD3P4	441013	267008		      124.62	       50.74	rs13130255-?	rs13130255	0	13130255	Intergenic	1	NR	3E-6	5.522878745280337	(funcPS)	NR	NR	Illumina [283,437]	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	3q22.2	3	135868969	PPP2R3A	EPHB1 - PPP2R3A	2047	5523		      608.50	       96.70	rs1401543-?	rs1401543	0	1401543	Intergenic	1	NR	8E-6	5.096910013008055	(Total PS)	NR	NR	Illumina [283,437]	N
01/27/2012	22216198	Athanasiadis G	12/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22216198	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry families.	NR	20q11.22	20	34977952	MYH7B	MYH7B			57644			rs11906160-?	rs11906160	0	11906160	missense	0	NR	1E-6	5.999999999999999	(PC)	NR	NR	Illumina [283,437]	N
01/19/2012	22197933	Hu Z	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197933	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Chinese ancestry cases, 1,657 Chinese ancestry controls.	1,946 Chinese ancestry cases, 4,077 Chinese ancestry controls.	1p13.3	1	106793679	PRMT6	SEPT2P1 - NDE1P1	100873333	100422372		     1095.45	       23.97	rs12097821-?	rs12097821	0	12097821	Intergenic	1	NR	6E-10	9.221848749616356		   1.25	[1.17-1.34] 	Affymetrix [587,347]	N
01/19/2012	22197933	Hu Z	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197933	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Chinese ancestry cases, 1,657 Chinese ancestry controls.	1,946 Chinese ancestry cases, 4,077 Chinese ancestry controls.	1p36.32	1	2461209	PEX10, MMEL1	PLCH2			9651			rs2477686-?	rs2477686	0	2477686	intron	0	NR	6E-12	11.22184874961635		   1.39	[1.26-1.52] 	Affymetrix [587,347]	N
01/19/2012	22197933	Hu Z	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197933	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Chinese ancestry cases, 1,657 Chinese ancestry controls.	1,946 Chinese ancestry cases, 4,077 Chinese ancestry controls.	12p12.1	12	24031610	SOX5	SOX5			6660			rs10842262-?	rs10842262	0	10842262	intron	0	NR	2E-9	8.698970004336019		   1.23	[1.15-1.32] 	Affymetrix [587,347]	N
01/19/2012	22197933	Hu Z	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197933	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Chinese ancestry cases, 1,657 Chinese ancestry controls.	1,946 Chinese ancestry cases, 4,077 Chinese ancestry controls.	20p13	20	1778944	LOC100289473	LOC100289473			100289473			rs6080550-?	rs6080550	0	6080550	intron	0	NR	2E-9	8.698970004336019		   1.27	[1.17-1.37] 	Affymetrix [587,347]	N
01/28/2012	22197932	Paternoster L	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197932	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	11q13.1	11	65784486	OVOL1	AP5B1 - OVOL1	91056	5017		        3.90	        2.55	rs479844-G	rs479844	0	479844	Intergenic	1	0.56	1E-13	13		   1.14	[1.10-1.18] 	Afftmetrix & Illumina [~2.5 million] (imputed)	N
01/28/2012	22197932	Paternoster L	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197932	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	19p13.2	19	8679120	ACTL9	ADAMTS10 - ACTL9	81794	284382		       68.37	       18.28	rs2164983-A	rs2164983	0	2164983	Intergenic	1	0.15	7E-9	8.154901959985743		   1.16	[1.10-1.22] 	Afftmetrix & Illumina [~2.5 million] (imputed)	N
01/28/2012	22197932	Paternoster L	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197932	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	5q31.1	5	132713335	KIF3A	KIF3A;LOC101927783			11127;101927783			rs2897442-C	rs2897442	0	2897442	intron;intron	0	0.29	4E-8	7.397940008672037		   1.11	[1.07-1.15] 	Afftmetrix & Illumina [~2.5 million] (imputed)	N
01/28/2012	22197932	Paternoster L	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197932	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	8q21.13	8	80395915	ZBTB10	RPS5P5 - ZBTB10	340443	65986		       94.38	       89.70	rs7000782-A	rs7000782	0	7000782	Intergenic	1	0.43	1E-6	5.999999999999999		   1.09	[1.05-1.13] 	Afftmetrix & Illumina [~2.5 million] (imputed)	N
01/28/2012	22197932	Paternoster L	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197932	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	22q12.3	22	36862461	NCF4	NCF4			4689			rs4821544-C	rs4821544	0	4821544	intron	0	0.29	6E-6	5.221848749616356		   1.09	[1.05-1.13] 	Afftmetrix & Illumina [~2.5 million] (imputed)	N
01/28/2012	22197932	Paternoster L	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197932	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	6p21.33	6	31531826	BAT1	DDX39B;ATP6V1G2-DDX39B			7919;100532737			rs3853601-G	rs3853601	0	3853601	intron;intron	0	0.12	2E-6	5.698970004336018		   1.13	[1.08-1.19] 	Afftmetrix & Illumina [~2.5 million] (imputed)	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	8p23.1	8	6965263	DEFAs	DEFA9P - DEFA10P	449492	449493		        5.10	        2.88	rs2738048-A	rs2738048	0	2738048	Intergenic	1	0.68	3E-14	13.52287874528034		   1.27	[1.19-1.35] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	17p13.1	17	7559652	TNFSF13	TNFSF13;TNFSF12-TNFSF13			8741;407977			rs3803800-A	rs3803800	0	3803800	missense;missense	0	0.35	9E-11	10.04575749056067		   1.21	[1.14-1.28] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	17p13.1	17	7587859	MPDU1	SOX15;MPDU1			6665;9526			rs4227-G	rs4227	0	4227	nearGene-3;ncRNA	0	0.21	4E-10	9.397940008672037		   1.23	[1.16-1.32] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	22q12.2	22	30027471	MTMR3	MTMR3;LOC101929664			8897;101929664			rs12537-C	rs12537	0	12537	UTR-3;intron	0	0.81	1E-11	11		   1.28	[1.19-1.39] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	6p22.1	6	29974166	HLA-A	HCG9			10255			rs2523946-C	rs2523946	0	2523946	nearGene-5	0	0.50	2E-11	10.69897000433602		   1.21	[1.15-1.28] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	6p21.32	6	32609603	HLA-DRB1	TRNAI25			100189401			rs660895-G	rs660895	0	660895		0	0.24	4E-20	19.39794000867203		   1.34	[1.26-1.42] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	2q13	2	110842129	ACOXL	ACOXL			55289			rs4849121-G	rs4849121	0	4849121	intron	0	NR	4E-7	6.397940008672037		   1.15	[1.09-1.22] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	16p11.2	16	31336427	Intergenic	ITGAM - ITGAX	3684	3687		        3.54	       18.71	rs3925075-?	rs3925075	0	3925075	Intergenic	1	NR	5E-6	5.301029995663981		   1.15	[1.09-1.23] 	Illumina [444,882]	N
01/24/2012	22197929	Yu XQ	12/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22197929	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Chinese ancestry cases, 4,270 Chinese ancestry controls.	2,703 Chinese ancestry cases, 3,464 Chinese ancestry controls.	6p21.32	6	32703471	HLA-DQA/B	TRNAI25			100189401			rs1794275-A	rs1794275	0	1794275		0	0.15	3E-13	12.52287874528034		   1.30	[1.21-1.39] 	Illumina [444,882]	N
01/27/2012	22199011	Murabito JM	12/23/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22199011	Association between chromosome 9p21 variants and the ankle-brachial index identified by a meta-analysis of 21 genome-wide association studies.	Ankle-brachial index 	41,692 European ancestry individuals	16,717 European ancestry individuals	9p21.3	9	22072265	CDKN2B	CDKN2B-AS1;LOC102724137			100048912;102724137			rs10757269-G	rs10757269	0	10757269	intron;nearGene-5	0	0.5	9E-9	8.045757490560675		    .00	[0.0029-0.0061] unit decrease	Affymetrix, Illumina & Perlgen [~2.5 million] (imputed)	N
01/27/2012	22199011	Murabito JM	12/23/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22199011	Association between chromosome 9p21 variants and the ankle-brachial index identified by a meta-analysis of 21 genome-wide association studies.	Ankle-brachial index 	41,692 European ancestry individuals	16,717 European ancestry individuals	1q43	1	240682824	GREM2	RPS11P2 - PRKRIRP8	645916	645939		       45.75	       86.60	rs4659996-A	rs4659996	0	4659996	Intergenic	1	0.48	7E-6	5.154901959985742		    .00	[0.0022-0.0058] unit decrease	Affymetrix, Illumina & Perlgen [~2.5 million] (imputed)	N
01/20/2012	22188591	Anantharaman R	12/21/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22188591	Genome-wide association study identifies PERLD1 as asthma candidate gene.	Asthma	490 Chinese ancestry cases, 490 Chinese ancestry controls	521 Chinese ancestry cases, 524 Chinese ancestry controls.	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [683,349] (pooled)	N
01/19/2012	22205951	Kerner B	12/21/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22205951	Genome-wide association study in bipolar patients stratified by co-morbidity.	Bipolar disorder	1,000 European ancestry cases, 1,034 European ancestry controls	NR	6q27	6	165741969	RP11-252P19.1	PDE10A - LINC00473	10846	90632		       79.87	      182.08	rs1039002-?	rs1039002	0	1039002	Intergenic	1	NR	2E-8	7.698970004336018	(Latent Class 1)	NR	NR	Affymetrix [728,331]	N
01/19/2012	22205951	Kerner B	12/21/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22205951	Genome-wide association study in bipolar patients stratified by co-morbidity.	Bipolar disorder	1,000 European ancestry cases, 1,034 European ancestry controls	NR	1q41	1	220484892	MARK1	SLMO2P1 - MARK1	100129664	4139		       16.43	       43.29	rs12563333-?	rs12563333	0	12563333	Intergenic	1	NR	6E-8	7.221848749616355	(Latent Class 1)	NR	NR	Affymetrix [728,331]	N
01/19/2012	22205951	Kerner B	12/21/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22205951	Genome-wide association study in bipolar patients stratified by co-morbidity.	Bipolar disorder	1,000 European ancestry cases, 1,034 European ancestry controls	NR	3p26.3	3	1856289	Intergenic	RPL23AP39 - RPL21P17	100271461	727810		      125.82	       49.36	rs2727943-?	rs2727943	0	2727943	Intergenic	1	NR	3E-8	7.522878745280337	(Latent Class 2)	NR	NR	Affymetrix [728,331]	N
01/27/2012	22182935	Chen DT	12/20/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22182935	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese cases, 1,000 Taiwanese controls	1,115 European ancestry cases, 2,728 European ancestry controls	1p31.1	1	78772330	PTGFR	RPL23P3 - ELTD1	100130630	64123		      105.63	      117.43	rs4650608-T	rs4650608	0	4650608	Intergenic	1	NR	8E-9	8.096910013008056		NR	NR	Affymetrix & Illumina [748,555]	N
01/27/2012	22182935	Chen DT	12/20/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22182935	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese cases, 1,000 Taiwanese controls	1,115 European ancestry cases, 2,728 European ancestry controls	2q11.2	2	96739703	LMAN2L	LMAN2L			81562			rs2271893-G	rs2271893	0	2271893	intron	0	NR	2E-10	9.698970004336017		NR	NR	Affymetrix & Illumina [748,555]	N
01/27/2012	22182935	Chen DT	12/20/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22182935	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese cases, 1,000 Taiwanese controls	1,115 European ancestry cases, 2,728 European ancestry controls	3p21.2	3	52245578	Intergenic	PPM1M;LOC101929054			132160;101929054			rs7618915-G	rs7618915	0	7618915	nearGene-5;ncRNA	0	NR	3E-10	9.522878745280336		NR	NR	Affymetrix & Illumina [748,555]	N
01/27/2012	22182935	Chen DT	12/20/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22182935	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese cases, 1,000 Taiwanese controls	1,115 European ancestry cases, 2,728 European ancestry controls	3p22.2	3	36814539	TRANK1	HSPD1P6 - TRANK1	645548	9881		       45.65	       12.28	rs9834970-C	rs9834970	0	9834970	Intergenic	1	NR	1E-12	12		NR	NR	Affymetrix & Illumina [748,555]	N
01/27/2012	22182935	Chen DT	12/20/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22182935	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese cases, 1,000 Taiwanese controls	1,115 European ancestry cases, 2,728 European ancestry controls	10q21.2	10	60425736	ANK3	ANK3			288			rs4948418-T	rs4948418	0	4948418	intron	0	NR	4E-10	9.397940008672037		NR	NR	Affymetrix & Illumina [748,555]	N
01/14/2012	22180457	Kiyotani K	12/16/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22180457	A genome-wide association study identifies locus at 10q22 associated with clinical outcomes of adjuvant tamoxifen therapy for breast cancer patients in Japanese.	Response to tamoxifen in breast cancer	240 Japanese ancestry cases	222 Japanese ancestry cases	10q22.3	10	76397814	C10orf11	C10orf11			83938			rs10509373-C	rs10509373	0	10509373	intron	0	0.024	6E-8	7.221848749616355		   4.51	[2.72-7.51] 	Illumina [470,796]	N
01/20/2012	22179738	Lai HM	12/16/2011	Rheumatology (Oxford)	http://www.ncbi.nlm.nih.gov/pubmed/22179738	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Type 2 diabetes and gout	20 Han Chinese cases, 42 Han Chinese controls	NR	NR			334 SNPs	 - 						NR	NR					NR	1E-7		(<1x10-7) gout	NR	NR	Illumina [479,403]	N
01/27/2012	22170493	Ellinghaus E	12/15/2011	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22170493	Genome-wide meta-analysis of psoriatic arthritis identifies susceptibility locus at REL.	Psoriatic arthritis	535 European ancestry cases, 3,432 European ancestry controls	1,931 European ancestry cases, 6,785 European ancestry controls	2p16.1	2	60937196	REL	REL			5966			rs13017599-?	rs13017599	0	13017599	intron	0	NR	1E-8	8		   1.27	[1.18-1.35] 	Illumina [1,160,703] (imputed)	N
01/27/2012	22170493	Ellinghaus E	12/15/2011	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22170493	Genome-wide meta-analysis of psoriatic arthritis identifies susceptibility locus at REL.	Psoriatic arthritis	535 European ancestry cases, 3,432 European ancestry controls	1,931 European ancestry cases, 6,785 European ancestry controls	2p16.1	2	60854407	REL	LINC01185			400957			rs702873-?	rs702873	0	702873	intron	0	NR	2E-7	6.698970004336019		   1.20	[1.13-1.28] 	Illumina [1,160,703] (imputed)	N
01/11/2012	22174390	Rankinen T	12/15/2011	J Appl Physiol (1985)	http://www.ncbi.nlm.nih.gov/pubmed/22174390	Heritability of submaximal exercise heart rate response to exercise training is accounted for by nine SNPs.	Heart rate variability traits	472 European ancestry individuals from 99 families	NR	2p25.1	2	9581767	YWHAQ	ADAM17 - YWHAQ	6868	10971		       25.98	        2.20	rs6432018-?	rs6432018	0	6432018	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Illumina [320,000]	N
01/11/2012	22174390	Rankinen T	12/15/2011	J Appl Physiol (1985)	http://www.ncbi.nlm.nih.gov/pubmed/22174390	Heritability of submaximal exercise heart rate response to exercise training is accounted for by nine SNPs.	Heart rate variability traits	472 European ancestry individuals from 99 families	NR	8p12	8	30405270	RBPMS	RBPMS			11030			rs2979481-?	rs2979481	0	2979481	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [320,000]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	16p13.3	16	3074919	IL32	IL32 - RNU1-22P	9235	100873863		        5.25	       11.22	rs4349147-?	rs4349147	0	4349147	Intergenic	1	NR	8E-6	5.096910013008055		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	6p24.2	6	11310186	NEDD9	NEDD9			4739			rs4437462-?	rs4437462	0	4437462	intron	0	NR	2E-6	5.698970004336018		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	11p15.1	11	19578424	AC023950.6	NAV2			89797			rs10741780-?	rs10741780	0	10741780	intron	0	NR	6E-6	5.221848749616356		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	8p11.22	8	39690859	ADAM18	ADAM18			8749			rs1349547-?	rs1349547	0	1349547	intron	0	NR	2E-6	5.698970004336018		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	19q13.33	19	47702468	GLTSCR1	GLTSCR1			29998			rs3745760-?	rs3745760	0	3745760	UTR-3	0	NR	8E-7	6.096910013008056		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	8q12.3	8	64727703	CYP7B1	CYP7B1			9420			rs10808739-?	rs10808739	0	10808739	intron	0	NR	1E-6	5.999999999999999		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	11q13.2	11	66895260	PC	PC			5091			rs7122539-?	rs7122539	0	7122539	intron	0	NR	8E-6	5.096910013008055		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	4q21.21	4	81088553	PRKG2	PRKG2			5593			rs3796804-?	rs3796804	0	3796804	UTR-3	0	NR	9E-6	5.045757490560675		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	798 African ancestry	NR	3q13.33	3	120298633	LRRC58	GPR156 - LRRC58	165829	116064		       13.56	       26.10	rs796825-?	rs796825	0	796825	Intergenic	1	NR	8E-6	5.096910013008055		    .00	 	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	2q12.1	2	103682083	Intergenic	TMEM182 - AHCYP3	130827	402093		      838.25	      712.92	rs264943-?	rs264943	0	264943	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	2p23.1	2	31091689	GALNT14	GALNT14			79623			rs1000916-?	rs1000916	0	1000916	intron	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	3p22.3	3	32336779	CMTM8	CMTM8			152189			rs6776297-?	rs6776297	0	6776297	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	4q34.3	4	176621822	VEGFC	SPCS3 - VEGFC	60559	7424		      289.58	       61.72	rs13111989-?	rs13111989	0	13111989	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	4q13.1	4	65605095	EPHA5	EPHA5			2044			rs4404602-?	rs4404602	0	4404602	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	4p12	4	45865444	AC095058.3	PRKRIRP9 - GABRG1	100131309	2565		      539.42	      170.33	rs7674482-?	rs7674482	0	7674482	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	4q22.1	4	87884056	HSP90AB3P	MEPE - HSP90AB3P	56955	3327		       37.24	        7.69	rs12644436-?	rs12644436	0	12644436	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	4q27	4	120120131	MAD2L1	LTV1P1 - SAR1AP3	100289220	344988		       27.87	      221.85	rs1493682-?	rs1493682	0	1493682	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	6p22.2	6	26031385	HIST1H4A	HIST1H3B			8358			rs10484434-?	rs10484434	0	10484434	nearGene-3	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	6q12	6	65888301	AL391500.13	ADH5P4 - NUFIP1P	642443	89761		       50.23	      203.17	rs10455590-?	rs10455590	0	10455590	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	8q13.1	8	65939496	DNAJC5B	PDE7A - DNAJC5B	5150	85479		       97.76	       82.06	rs4601292-?	rs4601292	0	4601292	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	16q22.1	16	68566448	ZFP90	ZFP90			146198			rs17689437-?	rs17689437	0	17689437	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	22q11.1	22	16576248	KB-67B5.12	ACTR3BP6 - KCNMB3P1	644773	27093		       87.91	        4.32	rs5746647-?	rs5746647	0	5746647	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [990,115]	N
01/31/2012	22174851	Lingappa JR	12/12/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174851	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	798 African ancestry individuals	NR	16p13.2	16	9288472	AC087190.5-2	RPL21P119 - RNA5SP404	653737	100873656		      131.55	      311.63	rs8061903-?	rs8061903	0	8061903	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [990,115]	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	4p16.3	4	1316113	MAEA	MAEA			10296			rs6815464-C	rs6815464	0	6815464	intron	0	0.58	2E-20	19.69897000433602		   1.13	[1.10–1.16]  	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	9p24.2	9	4287466	GLIS3	GLIS3			169792			rs7041847-A	rs7041847	0	7041847	intron	0	0.41	2E-14	13.69897000433602		   1.10	[1.07–1.13] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	20q13.12	20	44318326	FITM2,R3HDML,HNF4A	FITM2 - R3HDML	128486	140902		        7.08	       18.83	rs6017317-G	rs6017317	0	6017317	Intergenic	1	0.48	1E-11	11		   1.09	[1.07–1.12] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	7q32.1	7	127524904	GCC1,PAX4	ZNF800 - GCC1	168850	79571		      132.18	       55.72	rs6467136-G	rs6467136	0	6467136	Intergenic	1	0.79	5E-11	10.30102999566398		   1.11	[1.07–1.14] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	3p14.1	3	64062621	PSMD6	PSMD6 - PRICKLE2-AS1	9861	100652759		       38.61	        5.34	rs831571-c	rs831571	0	831571	Intergenic	1	0.61	8E-11	10.09691001300805		   1.09	[1.06–1.12] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	6p21.2	6	38139068	ZFAND3	ZFAND3			60685			rs9470794-C	rs9470794	0	9470794	intron	0	0.27	2E-10	9.698970004336017		   1.12	[1.08–1.16] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	19q13.11	19	33402102	PEPD	PEPD			5184			rs3786897-A	rs3786897	0	3786897	intron	0	0.56	1E-8	8		   1.10	[1.07–1.14] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	6p21.2	6	39316274	KCNK16	KCNK16;KCNK17			83795;89822			rs1535500-T	rs1535500	0	1535500	missense;nearGene-5	0	0.42	2E-8	7.698970004336018		   1.08	[1.05–1.11] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	16q23.2	16	81455768	CMIP	CMIP			80790			rs16955379-C	rs16955379	0	16955379	intron	0	0.80	3E-7	6.522878745280337		   1.08	[1.05–1.12] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158537	Cho YS	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158537	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	4,026 Chinese ancestry cases, 1,042 Korean ancestry cases, 794 Malaysian ancestry cases, 931 Japanese ancestry cases, 159 Filipino ancestry cases, 4,654 Chinese ancestry controls, 2,943 Korean ancestry controls, 1,240 Malaysian ancestry controls, 1,404 Japanese ancestry controls, 1,624 Filipino ancestry controls.	9,723 Japanese ancestry cases, 1,815 Korean ancestry cases, 6,589 Chinese ancestry cases, 8,974 Japanese ancestry controls, 2,066 Korean ancestry controls, Chinese ancestry controls.	16q23.2	16	79373021	WWOX	RNA5SP431 - MAF	100873681	4094		      108.45	      220.83	rs17797882-T	rs17797882	0	17797882	Intergenic	1	0.32	9E-7	6.045757490560675		   1.08	[1.05–1.12] 	Affymetrix & Illumina [2,626,356](imputed)	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	21q21.3	21	29345416	BACH1	BACH1			571			rs372883-T	rs372883	0	372883	intron	0	NR	2E-13	12.69897000433602		   1.27	[1.19-1.33] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	5p13.1	5	39394887	DAB2	DAB2			1601			rs2255280-T	rs2255280	0	2255280	intron	0	NR	4E-10	9.397940008672037		   1.23	[1.15-1.32] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	10q26.11	10	118519432	PRLHR	LINC00867 - PRLHR	100506126	2834		      160.23	       73.97	rs12413624-T	rs12413624	0	12413624	Intergenic	1	0.37	5E-11	10.30102999566398		   1.23	[1.16-1.31] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	21q22.3	21	42358786	TFF1	TFF2 - TFF1	7032	7031		        7.69	        3.50	rs1547374-A	rs1547374	0	1547374	Intergenic	1	NR	4E-13	12.39794000867204		   1.27	[1.19-1.35] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	13q22.1	13	73334709	NR	RNY1P8 - MARK2P12	100873807	100421565		      107.45	       73.08	rs9573163-G	rs9573163	0	9573163	Intergenic	1	0.43	5E-13	12.30102999566398		   1.26	[1.18-1.34] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	22q13.32	22	48533757	FAM19A5	FAM19A5			25817			rs5768709-G	rs5768709	0	5768709	intron	0	0.23	1E-10	10		   1.25	[1.17-1.34] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	1q43	1	238745053	MIPEPP2	KRT18P32 - MIPEPP2	391179	100130099		      252.35	       32.07	rs2689154-G	rs2689154	0	2689154	Intergenic	1	0.17	6E-6	5.221848749616356		   1.20	[1.11-1.29] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	6q12	6	68432116	BAI3	RNA5SP208 - BAI3	100873468	577		      964.81	      203.20	rs9363918-A	rs9363918	0	9363918	Intergenic	1	NR	1E-6	5.999999999999999		   1.27	[1.15-1.39] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	9p24.2	9	4426631	SLC1A1	GLIS3-AS1 - SLC1A1	84850	6505		      525.38	       63.80	rs10974531-A	rs10974531	0	10974531	Intergenic	1	NR	5E-6	5.301029995663981		   1.24	[1.13-1.35] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	6q25.3	6	155876368	ARID1B	LOC101928923			101928923			rs4269383-C	rs4269383	0	4269383	intron	0	NR	7E-7	6.154901959985743		   1.20	[1.12-1.30] 	Affymetrix [666,141]	N
01/18/2012	22158540	Wu C	12/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22158540	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Chinese ancestry cases, 1,991 Chinese ancestry contorls.	2,603 Chinese ancestry cases, 2,877 Chinese ancestry controls.	3q29	3	196024759	TFRC	LOC102723457			102723457			rs4927850-A	rs4927850	0	4927850	intron	0	NR	2E-7	6.698970004336019		   1.24	[1.14-1.35] 	Affymetrix [666,141]	N
01/14/2012	22156575	Paus T	12/09/2011	Cereb Cortex	http://www.ncbi.nlm.nih.gov/pubmed/22156575	KCTD8 gene and brain growth in adverse intrauterine environment: a genome-wide association study.	Brain development	557 European ancestry adolescents	2,601 European ancestry adolescents	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [530,011] 	N
01/10/2012	22174901	Chan KY	12/08/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22174901	Genome-wide association study of hepatocellular carcinoma in Southern Chinese patients with chronic hepatitis B virus infection.	Hepatocellular carcinoma	95 Chinese ancestry cases, 97 Chinese ancestry controls.	500 Chinese ancestry cases, 728 Chinese ancestry controls.	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [485,072]	N
01/06/2012	22142827	Innocenti F	12/05/2011	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22142827	A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303.	Response to gemcitabine in pancreatic cancer 	294 European ancestry cases	NR	6p12.2	6	52236941	IL17F	IL17F			112744			rs763780-G	rs763780	0	763780	missense	0	NR	3E-8	7.522878745280337		   3.30	[2.10-5.10] 	Illumina [330,690]	N
01/06/2012	22142827	Innocenti F	12/05/2011	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22142827	A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303.	Response to gemcitabine in pancreatic cancer 	294 European ancestry cases	NR	12p13.2	12	11394598	PRB2	PRB2			653247			rs2900174-G	rs2900174	0	2900174	intron	0	NR	1E-6	5.999999999999999		   3.30	[2.00-5.50] 	Illumina [330,690]	N
01/06/2012	22142827	Innocenti F	12/05/2011	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/22142827	A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303.	Response to gemcitabine in pancreatic cancer 	294 European ancestry cases	NR	12p13.33	12	1982091	DCP1B	CACNA1C;DCP1B			775;196513			rs11062040-A	rs11062040	0	11062040	intron;intron	0	NR	8E-6	5.096910013008055		   1.40	[1.20-1.70] 	Illumina [330,690]	N
01/06/2012	22144573	O'Donnell CJ	12/05/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/22144573	Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction.	Coronary artery calcification	9,961 European ancestry individuals	6,032 European ancestry individuals	9p21.3	9	22125504	CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      112.97	      321.34	rs1333049-C	rs1333049	0	1333049	Intergenic	1	NR	3E-24	23.52287874528033		    .20	[0.16-0.24] % increase	Affyemtrix & Illumina [~2.5 million] (imputed)	N
01/06/2012	22144573	O'Donnell CJ	12/05/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/22144573	Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction.	Coronary artery calcification	9,961 European ancestry individuals	6,032 European ancestry individuals	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-A	rs9349379	0	9349379	intron	0	NR	4E-22	21.39794000867203		    .20	[0.16-0.24] % decrease	Affyemtrix & Illumina [~2.5 million] (imputed)	N
01/06/2012	22144573	O'Donnell CJ	12/05/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/22144573	Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction.	Coronary artery calcification	9,961 European ancestry individuals	6,032 European ancestry individuals	13q34	13	110308596	COL4A2	COL4A1;COL4A2			1282;1284			rs3809346-A	rs3809346	0	3809346	nearGene-5;intron	0	NR	9E-7	6.045757490560675		    .10	[0.061-0.143] % increase	Affyemtrix & Illumina [~2.5 million] (imputed)	N
01/04/2012	22138694	Lin Z	12/04/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22138694	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese cases, 4,231 Han Chinese controls	2,100 Han Chinese cases, 3,496 Han Chinese controls	5q14.3	5	83877774	HAPLN1, EDIL3	RPL13AP14 - EDIL3	100271278	10085		      130.79	       62.82	rs4552569-C	rs4552569	0	4552569	Intergenic	1	0.28	9E-10	9.045757490560675		   1.21	[1.14-1.29] 	Illumina [1,356,350] (imputed)	N
01/04/2012	22138694	Lin Z	12/04/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22138694	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese cases, 4,231 Han Chinese controls	2,100 Han Chinese cases, 3,496 Han Chinese controls	12q12	12	45381125	ANO6	ANO6			196527			rs17095830-G	rs17095830	0	17095830	intron	0	0.10	2E-8	7.698970004336018		   1.29	[1.18-1.41] 	Illumina [1,356,350] (imputed)	N
01/04/2012	22138694	Lin Z	12/04/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22138694	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese cases, 4,231 Han Chinese controls	2,100 Han Chinese cases, 3,496 Han Chinese controls	6q21	6	109277761	Intergenic	CEP57L1 - PTCHD3P3	285753	100533665		      113.85	       10.81	rs13210693-A	rs13210693	0	13210693	Intergenic	1	0.46	9E-7	6.045757490560675		   1.15	[1.09-1.22] 	Illumina [1,356,350] (imputed)	N
01/04/2012	22138694	Lin Z	12/04/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22138694	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese cases, 4,231 Han Chinese controls	2,100 Han Chinese cases, 3,496 Han Chinese controls	14q13.1	14	32911892	NR	MTCO1P2 - NPAS3	326603	64067		      426.77	       23.02	rs12146962-?	rs12146962	0	12146962	Intergenic	1	NR	9E-6	5.045757490560675		   1.14	[1.08-1.20] 	Illumina [1,356,350] (imputed)	N
01/04/2012	22138694	Lin Z	12/04/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22138694	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese cases, 4,231 Han Chinese controls	2,100 Han Chinese cases, 3,496 Han Chinese controls	22q12.3	22	36914004	NR	CSF2RB			1439			rs2075726-G	rs2075726	0	2075726	intron	0	0.45	9E-6	5.045757490560675		   1.14	[1.07-1.20] 	Illumina [1,356,350] (imputed)	N
01/04/2012	22140272	Dalgaard MD	12/03/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22140272	A genome-wide association study of men with symptoms of testicular dysgenesis syndrome and its network biology interpretation.	Testicular dysgenesis syndrome 	488 European ancestry cases, 439 European ancestry controls	436 European ancestry cases, 235 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [600,798]	N
01/04/2012	22105264	Allen-Brady K	12/01/2011	Obstet Gynecol	http://www.ncbi.nlm.nih.gov/pubmed/22105264	Identification of six loci associated with pelvic organ prolapse using genome-wide association analysis.	Pelvic organ prolapse	115 European ancestry cases, 2,976 European ancestry controls	76 European ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [499,948]	N
12/24/2011	22144915	Fan Q	12/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22144915	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malaysian ancestry cases, 1,220 Malaysian ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry cases, 169 Chinese ancestry controls, 1,191 Chinese ancestry individuals from 397 parent-trios	4q12	4	54221414	Intergenic	RPL22P13			442108			rs17084051-A	rs17084051	0	17084051		0	0.23	2E-6	5.698970004336018		   1.21	[1.13-1.29] 	Illumina [460,528]	N
12/24/2011	22144915	Fan Q	12/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22144915	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malaysian ancestry cases, 1,220 Malaysian ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry cases, 169 Chinese ancestry controls, 1,191 Chinese ancestry individuals from 397 parent-trios	4q12	4	54258293	PDGFRA	PDGFRA			5156			rs7677751-T	rs7677751	0	7677751	intron	0	0.22	8E-9	8.096910013008056		   1.26	[1.18-1.34] 	Illumina [460,528]	N
12/24/2011	22144915	Fan Q	12/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22144915	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malaysian ancestry cases, 1,220 Malaysian ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry cases, 169 Chinese ancestry controls, 1,191 Chinese ancestry individuals from 397 parent-trios	3p14.1	3	67480964	SUCLG2	SUCLG2			8801			rs6792584-G	rs6792584	0	6792584	intron	0	NR	5E-6	5.301029995663981		   1.24	[1.14-1.34] 	Illumina [460,528]	N
12/24/2011	22144915	Fan Q	12/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22144915	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malaysian ancestry cases, 1,220 Malaysian ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry cases, 169 Chinese ancestry controls, 1,191 Chinese ancestry individuals from 397 parent-trios	11q13.4	11	74457366	KCNE3	KCNE3			10008			rs2270676-G	rs2270676	0	2270676	cds-synon	0	NR	5E-6	5.301029995663981		   1.29	[1.17-1.41] 	Illumina [460,528]	N
12/24/2011	22144915	Fan Q	12/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22144915	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malaysian ancestry cases, 1,220 Malaysian ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry cases, 169 Chinese ancestry controls, 1,191 Chinese ancestry individuals from 397 parent-trios	2q33.1	2	198814386	Intergenic	PLCL1 - SATB2	5334	23314		      664.50	      455.11	rs10189905-?	rs10189905	0	10189905	Intergenic	1	NR	6E-7	6.221848749616355		   1.32	[1.18-1.46] 	Illumina [460,528]	N
12/24/2011	22144915	Fan Q	12/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22144915	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malaysian ancestry cases, 1,220 Malaysian ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry cases, 169 Chinese ancestry controls, 1,191 Chinese ancestry individuals from 397 parent-trios	2q36.3	2	226136270	Intergenic	NYAP2 - MIR5702	57624	100847053		      482.25	      522.44	rs6758183-A	rs6758183	0	6758183	Intergenic	1	NR	3E-6	5.522878745280337		   1.39	[1.21-1.57] 	Illumina [460,528]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		8q21.3	8	91348168	SLC26A7	SLC26A7			115111			rs921231-G	rs921231	0	921231	intron	0	0.17	1E-6	5.999999999999999	(multivariate)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		13q12.3	13	30383551	KATNAL1	LINC00426 - UBE2L5P	100188949	171222		        9.65	       44.43	rs7335631-C	rs7335631	0	7335631	Intergenic	1	0.09	3E-6	5.522878745280337	(multivariate)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		1p13.3	1	108875057	GPSM2,CLCC1,AKNAD1, STXBP3	GPSM2			29899			rs7523050-A	rs7523050	0	7523050	nearGene-5	0	0.14	5E-6	5.301029995663981	(multivariate)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		22q12.1	22	27020862	MIAT	RPL15P22 - MN1	100130624	4330		      133.28	      727.42	rs4417-A	rs4417	0	4417	Intergenic	1	0.12	5E-6	5.301029995663981	(multivariate)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		22q13.1	22	37675036	LGALS1, PDXP	LGALS1			3956			rs4820294-A	rs4820294	0	4820294	nearGene-5	0	0.35	5E-6	5.301029995663981	(multivariate)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		1p13.3	1	108875057	GPSM2, CLCC1, AKNAD1, STXBP3	GPSM2			29899			rs7523050-A	rs7523050	0	7523050	nearGene-5	0	0.14	1E-6	5.999999999999999	(univariate, leg)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		11q23.3	11	118371280	UBE4A	UBE4A			9354			rs502514-G	rs502514	0	502514	intron	0	0.3	2E-6	5.698970004336018	(univariate, leg)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		3q29	3	196460737	RNF168	UBXN7-AS1 - RNF168	100874034	165918		       27.70	        8.05	rs2342371-G	rs2342371	0	2342371	Intergenic	1	0.28	4E-6	5.397940008672037	(univariate, leg)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		1p13.3	1	108875057	GPSM2,CLCC1, AKNAD1, STXBP3	GPSM2			29899			rs7523050-A	rs7523050	0	7523050	nearGene-5	0	0.14	4E-6	5.397940008672037	(univariate, lower trunk)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		1q41	1	220428281	MARK1	RPLP0P5 - SLMO2P1	643779	100129664		      110.60	       39.67	rs7512221-G	rs7512221	0	7512221	Intergenic	1	0.04	7E-6	5.154901959985742	(univariate, lower trunk)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		7p22.3	7	1249003	UNCX	UNCX - MICALL2	340260	79778		       12.03	      185.36	rs13241427-C	rs13241427	0	13241427	Intergenic	1	0.22	4E-7	6.397940008672037	(univariate, upper trunk)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		8q21.3	8	91348168	SLC26A7	SLC26A7			115111			rs921231-G	rs921231	0	921231	intron	0	0.17	2E-6	5.698970004336018	(univariate, upper trunk)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		9p22.2	9	18215282	ADAMTSL1	PUS7P1 - ADAMTSL1	100421790	92949		       61.07	      258.80	rs1944766-C	rs1944766	0	1944766	Intergenic	1	0.44	3E-6	5.522878745280337	(univariate, upper trunk)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		15q26.3	15	98063084	ARRDC4	ARRDC4 - FAM169B	91947	283777		       89.25	      374.08	rs1993976-A	rs1993976	0	1993976	Intergenic	1	0.39	8E-7	6.096910013008056	(univariate, arm)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		5q35.3	5	180385668	GFPT2	GFPT2 - CNOT6	9945	57472		       32.33	      108.56	rs10479469-G	rs10479469	0	10479469	Intergenic	1	0.33	2E-6	5.698970004336018	(univariate, arm)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		5p15.33	5	437987	AHRR	AHRR			57491			rs10078-C	rs10078	0	10078	UTR-3	0	0.23	7E-6	5.154901959985742	(univariate, arm)	NR	NR	Illumina [319,818]	N
08/21/2013	21897333	Irvin MR	12/01/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21897333	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases		8q21.3	8	91406400	SLC26A7	SLC26A7 - MRPS16P1	115111	137406		        8.25	      511.11	rs10504906-A	rs10504906	0	10504906	Intergenic	1	0.07	8E-6	5.096910013008055	(univariate, arm)	NR	NR	Illumina [319,818]	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		1q32.3	1	213944747	Intergenic	PROX1-AS1			100505832			rs340849-?	rs340849	0	340849	intron	0	NR	8E-6	5.096910013008055		   1.69	[1.33-2.13] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		2p24.2	2	17246318	Intergenic	FAM49A - ZFYVE9P2	81553	100420972		      580.45	       37.97	rs11889338-A	rs11889338	0	11889338	Intergenic	1	0.26	9E-6	5.045757490560675		   1.55	[1.28-1.88] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		2p23.2	2	27684606	SLC4A1AP	SLC4A1AP			22950			rs17006206-G	rs17006206	0	17006206	intron	0	0.10	2E-6	5.698970004336018		   2.05	[1.52-2.76] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		3p24.1	3	28887369	Intergenic	LINC00693 - MESTP4	645206	131572		      129.03	      199.98	rs2221154-?	rs2221154	0	2221154	Intergenic	1	NR	3E-6	5.522878745280337		   1.75	[1.39-2.22] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		4p16.3	4	2101369	POLN	POLN			353497			rs1923775-T	rs1923775	0	1923775	intron	0	0.25	6E-6	5.221848749616356		   1.60	[1.30-1.95] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		7q35	7	147200311	CNTNAP2	CNTNAP2			26047			rs10273775-G	rs10273775	0	10273775	intron	0	0.42	9E-6	5.045757490560675		   1.52	[1.27-1.84] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		8q24.13	8	121897448	Intergenic	HAS2-AS1 - MRPS36P3	594842	347704		      252.12	      194.02	rs956225-A	rs956225	0	956225	Intergenic	1	NR	9E-6	5.045757490560675		   3.33	[1.96-5.56] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		12q24.21	12	114942588	Intergenic	TBX3 - UBA52P7	6926	100128617		      258.42	      650.02	rs10850408-?	rs10850408	0	10850408	Intergenic	1	NR	9E-7	6.045757490560675		   1.59	[1.32-1.92] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		13q12.13	13	26150190	Intergenic	RNF6			6049			rs17511627-C	rs17511627	0	17511627	intron	0	0.17	5E-6	5.301029995663981		   1.75	[1.37-2.22] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		13q32.2	13	98479040	STK24	STK24			8428			rs912330-?	rs912330	0	912330	intron	0	NR	4E-6	5.397940008672037		   1.85	[1.43-2.44] 	Illumina [2,505,093] (imputed)	N
01/06/2012	22159054	Logue MW	12/01/2011	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22159054	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American ancestry cases, 496 African American ancestry controls		19q13.32	19	44878777	PVRL2	PVRL2			5819			rs6859-A	rs6859	0	6859	intron	0	NR	5E-7	6.30102999566398		   1.58	[NR] 	Illumina [2,505,093] (imputed)	N
01/11/2012	22130093	Nam RK	12/01/2011	Cancer Biol Ther	http://www.ncbi.nlm.nih.gov/pubmed/22130093	New variants at 10q26 and 15q21 are associated with aggressive prostate cancer in a genome-wide association study from a prostate biopsy screening cohort.	Prostate cancer	316 cases, 229 controls	55 Asian ancestry cases, 1,382 European ancestry cases, 184 African American ancestry cases, 42 Other ancestry cases, 134 Asian ancestry controls, 1,428 European ancestry controls, 127 African American ancestry controls, 87 Other ancestry controls	10q26.12	10	121273005	Intergenic	LINC01153 - FGFR2	101927889	2263		       87.04	      205.33	rs11199874-?	rs11199874	0	11199874	Intergenic	1	NR	3E-10	9.522878745280336		NR	NR	Affymetrix [443,816]	N
01/11/2012	22130093	Nam RK	12/01/2011	Cancer Biol Ther	http://www.ncbi.nlm.nih.gov/pubmed/22130093	New variants at 10q26 and 15q21 are associated with aggressive prostate cancer in a genome-wide association study from a prostate biopsy screening cohort.	Prostate cancer	316 cases, 229 controls	55 Asian ancestry cases, 1,382 European ancestry cases, 184 African American ancestry cases, 42 Other ancestry cases, 134 Asian ancestry controls, 1,428 European ancestry controls, 127 African American ancestry controls, 87 Other ancestry controls	15q21.1	15	46347610	Intergenic	SQRDL - SEMA6D	58472	80031		      656.32	      836.60	rs4775302-?	rs4775302	0	4775302	Intergenic	1	NR	4E-8	7.397940008672037		NR	NR	Affymetrix [443,816]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	3p24.1	3	28037594	EOMES	EOMES - CMC1	8320	152100		      314.88	      203.75	rs170934-T	rs170934	0	170934	Intergenic	1	0.48	2E-8	7.698970004336018		   1.17	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	9p24.1	9	5893861	MLANA	MLANA			2315			rs2150702-G	rs2150702	0	2150702	intron	0	0.49	3E-8	7.522878745280337		   1.16	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	2p21	2	43098432	THADA	LOC100506047			100506047			rs6718520-A	rs6718520	0	6718520	intron	0	0.48	3E-8	7.522878745280337		   1.17	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	1p13.1	1	116561593	CD58	CD58;MIR548AC			965;100616384			rs2300747-A	rs2300747	0	2300747	intron;nearGene-5	0	0.91	6E-9	8.221848749616356		   1.37	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	6p22.1	6	29952555	HLA-B	TRNAI25			100189401			rs9260489-T	rs9260489	0	9260489		0	0.45	1E-11	11		   1.21	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	6p21.32	6	32445768	HLA-DRB1	TRNAI25			100189401			rs3129889-G	rs3129889	0	3129889		0	0.20	1E-206	206		   2.97	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	10p15.1	10	6060049	IL2RA	IL2RA			3559			rs12722489-C	rs12722489	0	12722489	intron	0	0.85	4E-8	7.397940008672037		   1.23	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	17q21.2	17	42329511	STAT3	STAT3			6774			rs2293152-C	rs2293152	0	2293152	intron	0	0.62	4E-8	7.397940008672037		   1.22	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	20q13.12	20	46111557	CD40	RPL13P2 - CD40	128500	958		       11.36	        6.70	rs6074022-C	rs6074022	0	6074022	Intergenic	1	0.27	5E-6	5.301029995663981		   1.15	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	5q33.3	5	159332892	IL12B	LOC285626			285626			rs2546890-A	rs2546890	0	2546890	ncRNA	0	0.52	8E-8	7.096910013008055		   1.16	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	17q21.32	17	47691470	KPNB1, TBKBP1, TBX21	KPNB1 - TBKBP1	3837	9755		        7.83	        2.59	rs8070463-T	rs8070463	0	8070463	Intergenic	1	0.50	1E-7	7		   1.15	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	19p13.11	19	16437564	EPS15L1	EPS15L1			58513			rs10411936-A	rs10411936	0	10411936	intron	0	0.30	2E-7	6.698970004336019		   1.16	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	3q13.33	3	122050675	ILDR1, CD86	ILDR1 - CD86	286676	942		       28.40	        4.69	rs2681424-T	rs2681424	0	2681424	Intergenic	1	0.40	2E-7	6.698970004336019		   1.16	[NR]  	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	2p13.3	2	68419651	PLEK, FBXO48, C2orf13	PLEK - FBXO48	5341	554251		       22.20	       42.72	rs7592330-A	rs7592330	0	7592330	Intergenic	1	0.56	2E-7	6.698970004336019		   1.15	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	6q25.3	6	159044945	TAGAP	TAGAP			117289			rs1738074-C	rs1738074	0	1738074	UTR-5	0	0.58	4E-7	6.397940008672037		   1.15	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	10q22.3	10	79274913	ZMIZ1	ZMIZ1			57178			rs1250542-A	rs1250542	0	1250542	intron	0	0.37	4E-7	6.397940008672037		   1.15	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	16p13.13	16	11312946	TNP2, PRM3, PRM2, PRM1, C16orf75	MIR548H2 - RMI2	100313773	116028		        6.42	       32.51	rs7191700-C	rs7191700	0	7191700	Intergenic	1	0.67	6E-7	6.221848749616355		   1.15	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	13q14.2	13	50268304	Intergenic	DLEU1			10301			rs9596270-T	rs9596270	0	9596270	intron	0	0.93	7E-7	6.154901959985743		   1.35	[NR] 	Affymetrix & Illumina [2,529,394]	N
01/17/2012	22190364	Patsopoulos NA	12/01/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/22190364	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NR	5q33.3	5	159491886	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		      173.72	      424.85	rs10866713-A	rs10866713	0	10866713	Intergenic	1	0.22	7E-7	6.154901959985743		   1.17	[NR] 	Affymetrix & Illumina [2,529,394]	N
12/21/2011	22131368	Chen CT	11/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22131368	Replication of loci influencing ages at menarche and menopause in Hispanic women: the Women's Health Initiative SHARe Study.	Menarche and menopause (age at onset)	3,468 Hispanic ancestry women	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [871,309]	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	1p36.22	1	10226118	KIF1B	KIF1B;MIR1273D			23095;100422970			rs17396340-A	rs17396340	0	17396340	intron;nearGene-5	0	NR	3E-8	7.522878745280337		    .01	[0.0041-0.0119] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	1q24.3	1	171980610	DNM3	DNM3			26052			rs10914144-C	rs10914144	0	10914144	intron	0	NR	1E-24	24		    .01	[0.012-0.016] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	1q32.1	1	205275825	TMCC2	TMCC2 - NUAK2	9911	81788		        2.48	       26.23	rs1172130-G	rs1172130	0	1172130	Intergenic	1	NR	4E-27	26.39794000867203		    .01	[0.009-0.013] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	2p23.1	2	31241519	EHD3	EHD3			30845			rs649729-T	rs649729	0	649729	intron	0	NR	1E-12	12		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	2q37.3	2	240555596	ANKMY1	ANKMY1			51281			rs4305276-G	rs4305276	0	4305276	intron	0	NR	2E-11	10.69897000433602		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	3p14.3	3	56815721	ARHGEF3	ARHGEF3			50650			rs1354034-T	rs1354034	0	1354034	intron	0	NR	3E-69	68.52287874528032		    .02	[0.021-0.025] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	3q21.2	3	124621375	KALRN	KALRN			8997			rs10512627-C	rs10512627	0	10512627	intron	0	NR	5E-10	9.301029995663981		    .01	[0.004-0.008] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	4p16.1	4	6889792	KIAA0232	KIAA0232 - TBC1D14	9778	57533		        5.62	       19.65	rs11734132-G	rs11734132	0	11734132	Intergenic	1	NR	1E-11	11		    .01	[0.0071-0.0149] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	5q13.3	5	76727669	F2R	F2R			2149			rs2227831-G	rs2227831	0	2227831	intron	0	NR	1E-15	15		    .02	[0.015-0.027] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	5q14.3	5	88804134	MEF2C	MEF2C			4208			rs4521516-G	rs4521516	0	4521516	intron	0	NR	2E-9	8.698970004336019		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	5q33.3	5	159177955	RNF145	RNF145			153830			rs10076782-A	rs10076782	0	10076782	intron	0	NR	4E-8	7.397940008672037		    .01	[0.005-0.009] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	7q22.3	7	106731773	FLJ36031,PIK3CG	CCDC71L - RNA5SP236	168455	100873494		       70.59	       49.83	rs342293-G	rs342293	0	342293	Intergenic	1	NR	7E-57	56.15490195998573		    .02	[0.015-0.019] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	9p24.3	9	331490	DOCK8	DOCK8			81704			rs10813766-T	rs10813766	0	10813766	intron	0	NR	4E-12	11.39794000867204		    .01	[0.005-0.009] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	10q21.3	10	63290899	JMJD1C	JMJD1C			221037			rs7075195-A	rs7075195	0	7075195	intron	0	NR	2E-44	43.69897000433602		    .01	[0.012-0.016] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	11p15.5	11	270715	PSMD13,NLRP6	COX8BP - NLRP6	404544	171389		       13.74	        7.86	rs17655730-T	rs17655730	0	17655730	Intergenic	1	NR	2E-15	14.69897000433602		    .01	[0.008-0.012] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	12p13.31	12	6180053	CD9,VWF	VWF - CD9	7450	928		       55.38	       20.26	rs1558324-A	rs1558324	0	1558324	Intergenic	1	NR	2E-21	20.69897000433602		    .01	[0.008-0.012] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	12p11.22	12	29282547	MLSTD1	FAR2;LOC100506606			55711;100506606			rs2015599-A	rs2015599	0	2015599	intron;intron	0	NR	6E-16	15.22184874961635		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	12q13.13	12	54318524	COPZ1,NFE2,CBX5	NFE2			4778			rs10876550-G	rs10876550	0	10876550	intron	0	NR	2E-14	13.69897000433602		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	12q13.3	12	56661507	PTGES3,BAZ2A	SNORD59A - PTGES3	26789	10728		       16.41	        1.83	rs2950390-C	rs2950390	0	2950390	Intergenic	1	NR	7E-14	13.15490195998574		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	12q24.31	12	121927677	WDR66	WDR66			144406			rs7961894-T	rs7961894	0	7961894	intron	0	NR	1E-103	103		    .03	[0.028-0.032] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	13q34	13	113358583	GRTP1	GRTP1			79774			rs7317038-C	rs7317038	0	7317038	intron	0	NR	8E-12	11.09691001300806		    .01	[0.004-0.008] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	14q32.32	14	103106478	C14orf73	EXOC3L4			91828			rs944002-A	rs944002	0	944002	intron	0	NR	5E-11	10.30102999566398		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	14q32.33	14	105263455	BRF1	BRF1			2972			rs3000073-G	rs3000073	0	3000073	intron	0	NR	3E-11	10.52287874528034		    .01	[0.005-0.009] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	17q11.2	17	29387569	TAOK1	RPL35AP35 - MIR4523	100271636	100616122		       46.70	        3.09	rs8076739-T	rs8076739	0	8076739	Intergenic	1	NR	5E-38	37.30102999566398		    .01	[0.011-0.015] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	17q12	17	35617036	SNORD7,AP2B1	AP2B1			163			rs16971217-C	rs16971217	0	16971217	intron	0	NR	4E-12	11.39794000867204		    .01	[0.007-0.011] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	18q22.2	18	69869260	CD226	CD226			10666			rs12969657-T	rs12969657	0	12969657	intron	0	NR	3E-11	10.52287874528034		    .01	[0.005-0.009] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	19p13.12	19	16074749	TPM4	TPM4			7171			rs8109288-A	rs8109288	0	8109288	intron	0	NR	1E-11	11		    .03	[0.021-0.037] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	20p13	20	1944061	SIRPA	SIRPA - PDYN	140885	5173		        4.17	       34.70	rs13042885-C	rs13042885	0	13042885	Intergenic	1	NR	6E-14	13.22184874961636		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	18,600 European ancestry individuals	Up to 18,838 European ancestry individuals	20q13.32	20	59012716	CTSZ,TUBB1	CTSZ - TUBB1	1522	81027		        5.46	        6.54	rs4812048-C	rs4812048	0	4812048	Intergenic	1	NR	1E-9	8.999999999999998		    .01	[0.006-0.01] ln(fl) increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	1p36.22	1	11986006	MFN2	MFN2			9927			rs2336384-G	rs2336384	0	2336384	intron	0	NR	1E-8	8		   2.17	[1.42-2.92] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	1q24.3	1	171980610	DNM3	DNM3			26052			rs10914144-T	rs10914144	0	10914144	intron	0	NR	2E-12	11.69897000433602		   3.42	[2.46-4.37] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	1q32.1	1	205268009	TMCC2	TMCC2			9911			rs1668871-C	rs1668871	0	1668871	intron	0	NR	3E-14	13.52287874528034		   2.80	[2.08-3.53] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	1q44	1	247512257	LOC148824	GCSAML			148823			rs7550918-T	rs7550918	0	7550918	intron	0	NR	3E-11	10.52287874528034		   3.13	[2.21-4.06] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	1q44	1	247876149	TRIM58	TRIM58			25893			rs3811444-C	rs3811444	0	3811444	missense	0	NR	6E-9	8.221848749616356		   3.35	[2.22-4.47] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	NR	9E-10	9.045757490560675		   2.33	[1.59-3.08] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	2p23.1	2	31259434	EHD3	EHD3			30845			rs625132-G	rs625132	0	625132	intron	0	NR	9E-14	13.04575749056067		   4.24	[3.12-5.35] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	2p21	2	43460740	THADA	THADA			63892			rs17030845-C	rs17030845	0	17030845	intron	0	NR	1E-10	10		   3.58	[2.49-4.67] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	3p25.2	3	12226148	SYN2	TIMP4 - GSTM5P1	7079	100505557		       66.80	       31.23	rs7616006-A	rs7616006	0	7616006	Intergenic	1	NR	5E-8	7.30102999566398		   2.00	[1.28-2.71] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	3p24.3	3	18269920	SATB1	PDCL3P3 - SATB1	100132683	6304		      391.72	       75.89	rs7641175-A	rs7641175	0	7641175	Intergenic	1	NR	3E-11	10.52287874528034		   2.76	[1.94-3.57] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	3p14.3	3	56815721	ARHGEF3	ARHGEF3			50650			rs1354034-C	rs1354034	0	1354034	intron	0	NR	3E-54	53.52287874528033		   6.85	[5.98-7.71] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	3q21.1	3	123121029	PDIA5	PDIA5			10954			rs3792366-G	rs3792366	0	3792366	intron	0	NR	4E-9	8.397940008672036		   2.15	[1.44-2.87] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	4q22.1	4	87265357	HSD17B13	GAPDHP60 - MIR5705	2601	100847027		       57.06	       35.14	rs7694379-A	rs7694379	0	7694379	Intergenic	1	NR	9E-9	8.045757490560675		   2.13	[1.4-2.85] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	5q13.3	5	76751114	F2R	F2R - F2RL1	2149	2150		       15.34	       67.89	rs17568628-T	rs17568628	0	17568628	Intergenic	1	NR	1E-9	8.999999999999998		   6.07	[4.13-8.02] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	5q14.3	5	88856300	MEF2C	MEF2C			4208			rs700585-C	rs700585	0	700585	intron	0	NR	1E-9	8.999999999999998		   2.70	[1.84-3.57] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	5q31.1	5	132484229	IRF1	IRF1			3659			rs2070729-A	rs2070729	0	2070729	intron	0	NR	1E-10	10		   2.39	[1.67-3.12] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	6p22.2	6	25548060	LRRC16	LRRC16A			55604			rs441460-G	rs441460	0	441460	intron	0	NR	9E-18	17.04575749056067		   3.08	[2.38-3.78] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	6p21.33	6	31354590	HLA-B	HLA-B			3106			rs3819299-G	rs3819299	0	3819299	missense	0	NR	9E-10	9.045757490560675		   5.05	[3.43-6.66] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	6p21.32	6	33007237	HLA-DOA	HLA-DOA			3111			rs399604-C	rs399604	0	399604	intron	0	NR	1E-10	10		   2.35	[1.63-3.06] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	6p21.31	6	33572432	BAK1	BAK1			578			rs210134-G	rs210134	0	210134	nearGene-3	0	NR	7E-36	35.15490195998574		   4.96	[4.18-5.73] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	6q23.3	6	135097880	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-C	rs9399137	0	9399137	Intergenic	1	NR	5E-47	46.30102999566398		   5.90	[5.1-6.7] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	7q22.3	7	106718770	FLJ36031,PIK3CG	CCDC71L - RNA5SP236	168455	100873494		       57.58	       62.83	rs342275-C	rs342275	0	342275	Intergenic	1	NR	6E-25	24.22184874961636		   3.74	[3.03-4.45] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	7q31.32	7	123771169	WASL	WASL - HYALP1	8976	26062		       22.10	       42.97	rs4731120-C	rs4731120	0	4731120	Intergenic	1	NR	3E-12	11.52287874528034		   4.14	[2.98-5.3] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	8q23.1	8	105569300	ZFPM2	ZFPM2			23414			rs6993770-A	rs6993770	0	6993770	intron	0	NR	4E-17	16.39794000867203		   3.67	[2.81-4.52] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	8q24.3	8	143931393	PLEC1	PLEC			5339			rs6995402-C	rs6995402	0	6995402	intron	0	NR	5E-10	9.301029995663981		   2.30	[1.58-3.03] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	9p24.1	9	4744743	AK3	AK3 - ECM1P1	50808	100420354		        2.70	       23.89	rs409801-C	rs409801	0	409801	Intergenic	1	NR	3E-49	48.52287874528034		   5.59	[4.84-6.33] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	9p24.1	9	4814948	RCL1	RCL1			10171			rs13300663-C	rs13300663	0	13300663	intron	0	NR	1E-29	28.99999999999999		   5.59	[4.64-6.53] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	9p21.3	9	21986848	CDKN2A	CDKN2A			1029			rs3731211-A	rs3731211	0	3731211	intron	0	NR	6E-14	13.22184874961636		   3.28	[2.42-4.14] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	9q34.2	9	134060541	BRD3	BRD3			8019			rs11789898-T	rs11789898	0	11789898	intron	0	NR	2E-10	9.698970004336017		   3.01	[2.08-3.95] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	10q21.3	10	63267850	JMJD1C	JMJD1C			221037			rs10761731-T	rs10761731	0	10761731	intron	0	NR	2E-24	23.69897000433602		   3.85	[3.11-4.59] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	11p15.5	11	243268	PSMD13,NLRP6	PSMD13			5719			rs505404-G	rs505404	0	505404	intron	0	NR	7E-25	24.15490195998574		   4.66	[3.77-5.55] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	11q12.2	11	61796827	FEN1	FEN1			2237			rs4246215-T	rs4246215	0	4246215	UTR-3	0	NR	3E-10	9.522878745280336		   2.45	[1.69-3.22] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	11q23.3	11	119229196	CBL	CBL			867			rs4938642-C	rs4938642	0	4938642	intron	0	NR	8E-11	10.09691001300805		   4.73	[3.31-6.15] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	12p13.31	12	6181927	CD9,VWF	VWF - CD9	7450	928		       57.26	       18.39	rs7342306-G	rs7342306	0	7342306	Intergenic	1	NR	4E-11	10.39794000867204		   2.53	[1.78-3.28] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	12q13.3	12	56629500	PTGES3,BAZ2A	BAZ2A			11176			rs941207-G	rs941207	0	941207	intron	0	NR	2E-10	9.698970004336017		   2.75	[1.91-3.6] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	NR	1E-26	26		   3.99	[3.26-4.72] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	12q24.13	12	112663189	RPH3A,PTPN11	PTPN11 - MIR1302-1	5781	100302227		      153.27	       31.85	rs17824620-C	rs17824620	0	17824620	Intergenic	1	NR	1E-8	8		   2.46	[1.62-3.3] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	12q24.31	12	121927677	WDR66	WDR66			144406			rs7961894-C	rs7961894	0	7961894	intron	0	NR	1E-10	10		   3.92	[2.73-5.12] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	13q32.1	13	95245953	ABCC4	ABCC4			10257			rs4148441-G	rs4148441	0	4148441	intron	0	NR	7E-12	11.15490195998574		   4.12	[2.94-5.29] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	14q24.1	14	68054189	RAD51L1	RAD51B			5890			rs8022206-G	rs8022206	0	8022206	intron	0	NR	2E-10	9.698970004336017		   3.20	[2.22-4.18] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	14q32.12	14	93034681	ITPK1	ITPK1			3705			rs8006385-G	rs8006385	0	8006385	intron	0	NR	1E-10	10		   3.59	[2.49-4.68] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	14q32.2	14	100693079	C14orf70,DLK1	LINC00523 - DLK1	283601	8788		       20.34	       33.79	rs7149242-G	rs7149242	0	7149242	Intergenic	1	NR	3E-8	7.522878745280337		   2.14	[1.39-2.9] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	14q32.31	14	102573750	RCOR1	MIR4309 - RCOR1	100422954	23186		       34.02	       18.91	rs11628318-A	rs11628318	0	11628318	Intergenic	1	NR	2E-10	9.698970004336017		   2.57	[1.78-3.37] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	14q32.32	14	103100448	C14orf73	EXOC3L4			91828			rs2297067-T	rs2297067	0	2297067	missense	0	NR	2E-10	9.698970004336017		   3.54	[2.45-4.62] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	15q22.2	15	63041525	TPM1	TPM1			7168			rs3809566-G	rs3809566	0	3809566	nearGene-5	0	NR	4E-10	9.397940008672037		   2.44	[1.68-3.21] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	15q22.31	15	64891602	ANKDD1A	PLEKHO2 - ANKDD1A	80301	348094		       23.60	       20.30	rs1719271-G	rs1719271	0	1719271	Intergenic	1	NR	1E-11	11		   3.41	[2.43-4.4] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	17p13.2	17	4933086	GP1BA	GP1BA			2811			rs6065-T	rs6065	0	6065	missense	0	NR	3E-11	10.52287874528034		   4.19	[2.96-5.43] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	17p11.2	17	19900934	AKAP10	TRNAG26 - AKAP10	100189277	11216		       40.00	        3.52	rs397969-C	rs397969	0	397969	Intergenic	1	NR	2E-9	8.698970004336019		   2.13	[1.43-2.83] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	17q11.2	17	29487478	TAOK1	TAOK1			57551			rs559972-T	rs559972	0	559972	intron	0	NR	3E-18	17.52287874528034		   3.26	[2.53-4] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	17q12	17	35557785	SNORD7,AP2B1	SLFN14			342618			rs10512472-C	rs10512472	0	10512472	missense	0	NR	2E-14	13.69897000433602		   3.64	[2.7-4.57] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	17q21.31	17	44364976	FAM171A2,ITGA2B	FAM171A2			284069			rs708382-T	rs708382	0	708382	nearGene-5	0	NR	2E-8	7.698970004336018		   2.44	[1.59-3.28] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	18q11.2	18	23141009	CABLES1	CABLES1			91768			rs11082304-G	rs11082304	0	11082304	intron	0	NR	5E-11	10.30102999566398		   2.48	[1.74-3.22] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	19p13.12	19	16074749	TPM4	TPM4			7171			rs8109288-G	rs8109288	0	8109288	intron	0	NR	3E-10	9.522878745280336		  11.95	[8.24-15.65] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	19q13.32	19	45237513	EXOC3L2	EXOC3L2 - MARK4	90332	57787		        3.30	       13.75	rs17356664-C	rs17356664	0	17356664	Intergenic	1	NR	4E-10	9.397940008672037		   2.60	[1.79-3.41] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	22q11.21	22	19996754	ARVCF	ARVCF			421			rs1034566-T	rs1034566	0	1034566	intron	0	NR	3E-8	7.522878745280337		   2.13	[1.38-2.88] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2012	22139419	Gieger C	11/30/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/22139419	New gene functions in megakaryopoiesis and platelet formation.	Platelet counts	48,666 individuals of European ancestry	Up to 18,838 individuals of European ancestry	3q27.1	3	184372478	THPO	THPO			7066			rs6141-T	rs6141	0	6141	UTR-3	0	NR	6E-8	7.221848749616355		   2.47	[1.57-3.36] 10^9/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/07/2012	22137330	Sanchez-Juan P	11/30/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22137330	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	20p13	20	4696446	PRNP	PRNP			5621			rs6107516-?	rs6107516	0	6107516	intron	0	NR	3E-18	17.52287874528034		NR	NR	Afymetrix [287,554]	N
01/07/2012	22137330	Sanchez-Juan P	11/30/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22137330	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	20p13	20	4717980	PRNP	PRNP - PRND	5621	23627		       16.39	        3.87	rs6116492-?	rs6116492	0	6116492	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Afymetrix [287,554]	N
01/07/2012	22137330	Sanchez-Juan P	11/30/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22137330	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	12q21.1	12	71183321	NR	TSPAN8 - LGR5	7103	8549		       25.32	      255.83	rs1495377-?	rs1495377	0	1495377	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Afymetrix [287,554]	N
01/07/2012	22137330	Sanchez-Juan P	11/30/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22137330	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	11q24.2	11	125371150	NR	PKNOX2			63876			rs12273350-?	rs12273350	0	12273350	intron	0	NR	2E-6	5.698970004336018		NR	NR	Afymetrix [287,554]	N
01/07/2012	22137330	Sanchez-Juan P	11/30/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22137330	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	8p22	8	17348068	MTMR7	MTMR7			9108			rs4921542-?	rs4921542	0	4921542	intron	0	NR	2E-8	7.698970004336018		   3.25	[2.22-4.78] 	Afymetrix [287,554]	N
01/07/2012	22137330	Sanchez-Juan P	11/30/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22137330	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	2q11.2	2	100807869	NPAS2	NANOGNBP1 - NPAS2	100859926	4862		      146.93	       12.28	rs7565981-?	rs7565981	0	7565981	Intergenic	1	NR	4E-8	7.397940008672037		   2.98	[2.03-4.35] 	Afymetrix [287,554]	N
12/20/2011	22118420	Datta S	11/28/2011	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22118420	A genome-wide search for non-UGT1A1 markers associated with unconjugated bilirubin level reveals significant association with a polymorphic marker near a gene of the nucleoporin family.	Bilirubin levels	182 Asian Indian ancestry individuals	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [512,349]	N
12/20/2011	22126837	LeBlanc M	11/28/2011	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/22126837	Genome-wide study identifies PTPRO and WDR72 and FOXQ1-SUMO1P1 interaction associated with neurocognitive function.	Cognitive function	190 European ancestry schizophrenia cases, 157 European ancestry  bipolar disorder cases, 353 European ancestry controls	NR	12p12.3	12	15582508	PTPRO	PTPRO			5800			rs2300290-?	rs2300290	0	2300290	intron	0	NR	1E-8	8		   1.10	[0.73-1.47] unit decrease	Affymetrix [550,291]	N
12/20/2011	22126837	LeBlanc M	11/28/2011	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/22126837	Genome-wide study identifies PTPRO and WDR72 and FOXQ1-SUMO1P1 interaction associated with neurocognitive function.	Cognitive function	190 European ancestry schizophrenia cases, 157 European ancestry  bipolar disorder cases, 353 European ancestry controls	NR	15q21.3	15	52987181	WDR72	EEF1A1P22 - WDR72	645693	256764		       48.66	      526.56	rs719714-?	rs719714	0	719714	Intergenic	1	NR	4E-8	7.397940008672037		   9.45	[6.10-12.80] unit increase	Affymetrix [550,291]	N
12/20/2011	22120009	Broderick P	11/27/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22120009	Common variation at 3p22.1 and 7p15.3 influences multiple myeloma risk.	Multiple myeloma	1,675 European ancestry cases, 5,903 European ancestry controls	169 European ancestry cases, 927 European ancestry controls	7p15.3	7	21898622	DNAH11	DNAH11			8701			rs4487645-C	rs4487645	0	4487645	intron	0	0.65	3E-14	13.52287874528034		   1.38	[1.28-1.50] 	Illumina [422,839]	N
12/20/2011	22120009	Broderick P	11/27/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22120009	Common variation at 3p22.1 and 7p15.3 influences multiple myeloma risk.	Multiple myeloma	1,675 European ancestry cases, 5,903 European ancestry controls	169 European ancestry cases, 927 European ancestry controls	3p22.1	3	41883906	ULK4	ULK4			54986			rs1052501-G	rs1052501	0	1052501	missense	0	0.16	2E-8	7.698970004336018		   1.32	[1.20-1.45] 	Illumina [422,839]	N
12/20/2011	22120009	Broderick P	11/27/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22120009	Common variation at 3p22.1 and 7p15.3 influences multiple myeloma risk.	Multiple myeloma	1,675 European ancestry cases, 5,903 European ancestry controls	169 European ancestry cases, 927 European ancestry controls	2p23.3	2	25436375	DTNB	DTNB			1838			rs6746082-A	rs6746082	0	6746082	intron	0	0.79	4E-7	6.397940008672037		   1.29	[1.17-1.42] 	Illumina [422,839]	N
12/20/2011	22116939	Guo Y	11/24/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22116939	Two-stage genome-wide association study identifies variants in CAMSAP1L1 as susceptibility loci for epilepsy in Chinese.	Epilepsy	504 Han Chinese cases, 2,947 Han Chinese controls	583 Han Chinese cases, 497 Han Chinese controls	1q32.1	1	200857641	CAMSAP1L1	CAMSAP2			23271			rs2292096-?	rs2292096	0	2292096	intron	0	NR	1E-8	8		   1.59	[NR] 	Illumina [461,024]	N
01/11/2012	22116950	Schuh-Huerta SM	11/24/2011	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/22116950	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry women, 200 African American ancestry women	NR	2p22.3	2	34405965	MYADML	SLC25A5P2 - MIR548AD	344371	100616475		      565.22	     1065.44	rs6543833-?	rs6543833	0	6543833	Intergenic	1	NR	8E-8	7.096910013008055	(FSH levels - AA)	NR	NR	Affymetrix [677,261]	N
01/11/2012	22116950	Schuh-Huerta SM	11/24/2011	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/22116950	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry women, 200 African American ancestry women	NR	10p14	10	7694941	ITIH2	ITIH5 - ITIH2	80760	3698		       27.94	        8.33	rs11255291-?	rs11255291	0	11255291	Intergenic	1	NR	2E-6	5.698970004336018	(FSH levels - AA)	NR	NR	Affymetrix [677,261]	N
01/11/2012	22116950	Schuh-Huerta SM	11/24/2011	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/22116950	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry women, 200 African American ancestry women	NR	12p13.1	12	13774962	GRIN2B	GRIN2B			2904			rs6488619-?	rs6488619	0	6488619	intron	0	NR	9E-7	6.045757490560675	(FSH levels - Caucasians)	NR	NR	Affymetrix [677,261]	N
01/11/2012	22116950	Schuh-Huerta SM	11/24/2011	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/22116950	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry women, 200 African American ancestry women	NR	5p13.3	5	32748531	NPR3	NPR3			4883			rs10061804-?	rs10061804	0	10061804	intron	0	NR	1E-6	5.999999999999999	(FSH levels - Caucasians)	NR	NR	Affymetrix [677,261]	N
01/11/2012	22116950	Schuh-Huerta SM	11/24/2011	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/22116950	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry women, 200 African American ancestry women	NR	3p25.1	3	13919660	TPRXL	WNT7A - VN1R20P	7476	100312775		       39.54	        7.20	rs9875589-?	rs9875589	0	9875589	Intergenic	1	NR	4E-6	5.397940008672037	(AMH levels - AA)	NR	NR	Affymetrix [677,261]	N
01/11/2012	22116950	Schuh-Huerta SM	11/24/2011	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/22116950	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry women, 200 African American ancestry women	NR	11p15.1	11	18668106	TMEM86A	SPTY2D1 - TMEM86A	144108	144110		       33.63	       30.70	rs12295403-?	rs12295403	0	12295403	Intergenic	1	NR	5E-6	5.301029995663981	(AMH levels- AA)	NR	NR	Affymetrix [677,261]	N
01/11/2012	22116950	Schuh-Huerta SM	11/24/2011	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/22116950	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry women, 200 African American ancestry women	NR	6p23	6	14586772	JARID2	LINC01108 - RPL6P17	102216342	100131229		      301.32	      516.17	rs12213875-?	rs12213875	0	12213875	Intergenic	1	NR	3E-7	6.522878745280337	(AMH - Caucasians)	NR	NR	Affymetrix [677,261]	N
12/20/2011	22116812	Schrijvers EM	11/23/2011	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/22116812	Genome-wide association study of vascular dementia.	Vascular dementia	67 European ancestry cases, 5,633 European ancestry controls	256 European ancestry cases, 5,839 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [528,127]	N
12/23/2011	22105620	Papassotiropoulos A	11/22/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22105620	A genome-wide survey and functional brain imaging study identify CTNNBL1 as a memory-related gene.	Memory performance	1,073 European ancestry individuals	524 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [582,514]	N
12/17/2011	22101970	Kho AN	11/19/2011	J Am Med Inform Assoc	http://www.ncbi.nlm.nih.gov/pubmed/22101970	Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study.	Type 2 diabetes	2,413 European ancestry cases, 810 African American cases, 2,392 European ancestry controls, 873 African American controls	NR	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.26 (EA+AA)	2E-15	14.69897000433602		   1.46	[NR] 	Illumina [NR]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	2q37.1	2	233759924	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs887829-T	rs887829	0	887829	intron;intron;intron;intron;intron;intron;intron;nearGene-5;intron	0	0.45	2E-22	21.69897000433602		    .23	[0.183-0.270] unit increase	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	16p13.12	16	13951542	ERCC4	ERCC4			2072			rs4781563-A	rs4781563	0	4781563	ncRNA	0	0.156	2E-6	5.698970004336018		    .16	[0.097-0.229] unit decrease	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	7p15.3	7	22716844	AC073072.5	EEF1A1P6 - IL6	221838	3569		      204.79	       10.30	rs10155981-T	rs10155981	0	10155981	Intergenic	1	0.418	2E-7	6.698970004336019		    .13	[0.079-0.173] unit increase	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	1p31.3	1	64402669	RNU7-62P	UBE2U - CACHD1	148581	57685		      135.38	       68.12	rs11208446-A	rs11208446	0	11208446	Intergenic	1	0.275	9E-6	5.045757490560675		    .12	[0.067-0.172] unit increasee	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	13q21.33	13	69880828	KLHL1	KLHL1			57626			rs11843309-T	rs11843309	0	11843309	intron	0	0.062	7E-6	5.154901959985742		    .21	[0.12-0.304] unit increase	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	3p13	3	71974549	RP11-648C16.1	PROK2 - LINC00877	60675	285286		      189.34	       60.97	rs2135319-A	rs2135319	0	2135319	Intergenic	1	0.081	4E-6	5.397940008672037		    .19	[0.112-0.276] unit increase	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	2p12	2	81645798	AC013262.1	LRRTM1 - MTND4P25	347730	100873246		     1341.21	     1169.17	rs12052359-A	rs12052359	0	12052359	Intergenic	1	0.062	7E-6	5.154901959985742		    .22	[0.127-0.321] unit increase	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	1p31.1	1	81609167	RP5-837I24.4	LPHN2			23266			rs11809789-A	rs11809789	0	11809789	intron	0	0.014	6E-6	5.221848749616356		    .40	[0.226-0.565] unit increase	Affymetrix [808,465]	N
12/17/2011	22085899	Chen G	11/16/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22085899	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NR	8q23.3	8	111963912	AC068954.1, RP11-58O3.2	EEF1A1P37 - CSMD3	100421825	114788		      737.72	      259.02	rs12549576-G	rs12549576	0	12549576	Intergenic	1	0.040	1E-6	5.999999999999999		    .30	[0.18-0.419] unit increase	Affymetrix [808,465]	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	1p33	1	46713638	KIAA0494	EFCAB14			9813			rs10789491-G	rs10789491	0	10789491	intron	0	NR	1E-6	5.999999999999999		    .31	[0.19-0.44] ug/L increase	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	1p36.13	1	17508246	ARHGEF10L	LOC102723454			102723454			rs2254135-T	rs2254135	0	2254135	intron	0	NR	3E-6	5.522878745280337		    .27	[0.16-0.38] ug/L increase	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	1p31.1	1	84399547	DNASE2B	DNASE2B;UOX			58511;391051			rs12144715-T	rs12144715	0	12144715	intron;nearGene-5	0	NR	7E-6	5.154901959985742		    .64	[0.36-0.91] ug/L decrease	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	2q36.1	2	223594965	SCG2	HIGD1AP4 - SCG2	100874435	7857		      196.42	        1.98	rs16864968-G	rs16864968	0	16864968	Intergenic	1	NR	3E-6	5.522878745280337		    .83	[0.48-1.17] ug/L decrease	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	4p11	4	49060875	CWH43	CWH43			80157			rs11725957-G	rs11725957	0	11725957	intron	0	NR	8E-6	5.096910013008055		    .73	[0.41-1.05] ug/L increase	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	6q25.3	6	160402996	SLC22A3	SLC22A3			6581			rs2504916-T	rs2504916	0	2504916	intron	0	NR	2E-6	5.698970004336018		    .31	[0.18-0.43] ug/L increase	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	6p25.3	6	1535763	RP11-157J24.1	LOC102723958			102723958			rs11242704-G	rs11242704	0	11242704	intron	0	NR	5E-6	5.301029995663981		    .26	[0.15-0.37] ug/L decrease	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	6q16.1	6	93201401	EPHA7	COPS5P1 - EPHA7	135270	2045		      108.45	       38.62	rs12527818-T	rs12527818	0	12527818	Intergenic	1	NR	7E-6	5.154901959985742		    .27	[0.15-0.39] ug/L increase	NR	N
12/20/2011	22095909	Lange CM	11/16/2011	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/22095909	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NR	9q34.3	9	135137855	OLFM1	OLFM1 - C9orf62	10439	157927		       16.67	      205.39	rs10776934-T	rs10776934	0	10776934	Intergenic	1	NR	1E-6	5.999999999999999		    .28	[0.17-0.39] ug/L decrease	NR	N
01/27/2012	22086417	Cozen W	11/15/2011	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22086417	A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32.	Nodular sclerosis Hodgkin lymphoma	393 European ancestry cases, 3,315 European ancestry controls	113 European ancestry cases, 214 European ancestry controls	6p21.32[rs204999]; 6p21.32[rs9268528]			HLA-DRB1, HLA-DQB1	 - 						5-SNP haplotype 3	rs204999,rs9268528,rs9268542,rs6903608,rs2858870					NR (AGGCT)	2E-7			   1.70	[NR] 	Illumina [705,591]	N
01/27/2012	22086417	Cozen W	11/15/2011	Blood	http://www.ncbi.nlm.nih.gov/pubmed/22086417	A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32.	Nodular sclerosis Hodgkin lymphoma	393 European ancestry cases, 3,315 European ancestry controls	113 European ancestry cases, 214 European ancestry controls	6p21.32[rs204999]; 6p21.32[rs9268528]			HLA-DRB1, HLA-DQB1	 - 						5-SNP haplotype 6	rs204999, rs9268528, rs9268542, rs6903608, rs2858870					NR (GAATC)	8E-18			   2.50	[NR] 	Illumina [705,591]	N
12/17/2011	22081228	Khor CC	11/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22081228	Genome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease.	Kawasaki disease	405 European ancestry cases, 6,252 European ancestry controls	1815 European ancestry individuals and 405 non-European ancestry individuals from 740 trios, 139 additional discordant European ancestry siblings, 1,028 East Asian ancestry cases, 1,512 East Asian ancestry controls	1q23.3	1	161509955	FCGR2A	FCGR2A			2212			rs1801274-A	rs1801274	0	1801274	missense	0	0.47	7E-11	10.15490195998574		   1.32	[1.22-1.44] 	Illumina [494,236]	N
12/17/2011	22081228	Khor CC	11/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22081228	Genome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease.	Kawasaki disease	405 European ancestry cases, 6,252 European ancestry controls	1815 European ancestry individuals and 405 non-European ancestry individuals from 740 trios, 139 additional discordant European ancestry siblings, 1,028 East Asian ancestry cases, 1,512 East Asian ancestry controls	19q13.2	19	40718299	ITPKC	ADCK4;ITPKC			79934;80271			rs28493229-?	rs28493229	0	28493229	nearGene-5;intron	0	0.13	2E-12	11.69897000433602		   1.52	[1.35-1.70] 	Illumina [494,236]	N
12/15/2011	22080838	Cho MH	11/11/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22080838	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 probands, 1,876 siblings	4q22.1	4	88954758	FAM13A	FAM13A			10144			rs1964516-?	rs1964516	0	1964516	intron	0	NR	2E-9	8.698970004336019		   1.37	[1.23-1.52] 	Illumina [797,983]	N
12/15/2011	22080838	Cho MH	11/11/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22080838	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 probands, 1,876 siblings	19q13.2	19	40796801	RAB4B, EGLN2, CYP2A6	RAB4B;MIA-RAB4B;RAB4B-EGLN2			53916;100529262;100529264			rs7937-?	rs7937	0	7937	UTR-3;ncRNA;intron	0	NR	3E-9	8.522878745280337		   1.37	[1.20-1.59] 	Illumina [797,983]	N
12/15/2011	22080838	Cho MH	11/11/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22080838	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 probands, 1,876 siblings	4q31.21	4	144585304	HHIP	KRT18P51 - HHIP-AS1	391703	646576		       12.31	       57.61	rs13141641-?	rs13141641	0	13141641	Intergenic	1	NR	3E-7	6.522878745280337		   1.32	[1.14-1.54] 	Illumina [797,983]	N
12/15/2011	22080838	Cho MH	11/11/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22080838	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 probands, 1,876 siblings	15q25.1	15	78490935	CHRNA3, CHRNA5, IREB2	IREB2			3658			rs11858836-?	rs11858836	0	11858836	intron	0	NR	1E-6	5.999999999999999		   1.29	[1.13-1.47] 	Illumina [797,983]	N
01/06/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	11q12.1	11	56408195	OR8U8	OR5AL2P - OR5AL1	79476	79482		       13.55	        4.50	rs1945213-?	rs1945213	0	1945213	Intergenic	1	NR	3E-8	7.522878745280337	(Combined ALL)	   1.30	[1.19-1.43] 	Affymetrix [355,750]	N
01/06/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	6q14.1	6	77080091	Intergenic	IMPG1 - HTR1B	3617	3351		     1007.41	      382.14	rs7738636-?	rs7738636	0	7738636	Intergenic	1	NR	6E-6	5.221848749616356	(Combined ALL)	   1.27	[1.15-1.41] 	Affymetrix [355,750]	N
01/06/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	3q28	3	189683987	TP63	TP63			8626			rs17505102-?	rs17505102	0	17505102	intron	0	NR	2E-8	7.698970004336018	(Combined ALL)	   1.47	[1.28-1.67] 	Affymetrix [355,750]	N
01/07/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	3q28	3	189683987	TP63	TP63			8626			rs17505102-?	rs17505102	0	17505102	intron	0	NR	9E-9	8.045757490560675	(ETV6-RUNX1-positive)	NR	NR	Affymetrix [355,750]	N
01/07/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	11q12.1	11	56408195	OR8U8	OR5AL2P - OR5AL1	79476	79482		       13.55	        4.50	rs1945213-?	rs1945213	0	1945213	Intergenic	1	NR	4E-8	7.397940008672037	(ETV6-RUNX1-positive)	NR	NR	Affymetrix [355,750]	N
01/07/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	11p11.2	11	48093537	PTPRJ	PTPRJ			5795			rs3942852-?	rs3942852	0	3942852	intron	0	NR	1E-6	5.999999999999999	(ETV6-RUNX1-positive)	NR	NR	Affymetrix [355,750]	N
01/07/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	14q24.3	14	76237008	C14orf118	GPATCH2L - ESRRB	55668	2103		        7.17	       86.91	rs7156960-?	rs7156960	0	7156960	Intergenic	1	NR	1E-6	5.999999999999999	(ETV6-RUNX1-positive)	NR	NR	Affymetrix [355,750]	N
01/07/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	15q26.1	15	92114143	SLCO3A1	SLCO3A1			28232			rs207954-?	rs207954	0	207954	intron	0	NR	1E-6	5.999999999999999	(ETV6-RUNX1-positive)	NR	NR	Affymetrix [355,750]	N
01/07/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	8p21.3	8	19793650	INTS10	CSGALNACT1 - INTS10	55790	55174		       36.41	       23.50	rs920590-?	rs920590	0	920590	Intergenic	1	NR	2E-6	5.698970004336018	(ETV6-RUNX1-positive)	NR	NR	Affymetrix [355,750]	N
01/06/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	4q13.1	4	58637561	Intergenic	SRIP1 - MIR548AG1	6644	100616450		      533.93	     2285.06	rs282708-?	rs282708	0	282708	Intergenic	1	NR	8E-6	5.096910013008055	(Combined ALL)	   1.23	[1.12-1.35] 	Affymetrix [355,750]	N
01/06/2012	22076464	Ellinghaus E	11/11/2011	Leukemia	http://www.ncbi.nlm.nih.gov/pubmed/22076464	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry cases, 474 European ancestry controls	Up to 1,277 European ancestry cases and 3,061 European ancestry controls	14q24.3	14	76237008	C14orf118	GPATCH2L - ESRRB	55668	2103		        7.17	       86.91	rs7156960-?	rs7156960	0	7156960	Intergenic	1	NR	3E-6	5.522878745280337	(Combined ALL)	   1.22	[1.12-1.33] 	Affymetrix [355,750]	N
12/15/2011	22072270	Wang KS	11/11/2011	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/22072270	Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.	Alcohol withdrawal symptoms	461 European ancestry cases, 408 European ancestry controls	318 cases, 507 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [778,974]	N
04/12/2013	22075249	Tang WH	11/10/2011	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/22075249	Clinical and genetic association of serum ceruloplasmin with cardiovascular risk.	Serum ceruloplasmin levels	2,647 European ancestry individuals	2,050 European ancestry individuals	3q25.1	3	149195339	Intergenic	CP			1356			rs13072552-T	rs13072552	0	13072552	intron	0	0.079	2E-11	10.69897000433602		   1.50	 mg/dl increase	Affymetrix [2,421,770] (Imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	1q23.2	1	159302270	FCER1A	FCER1A			2205			rs2251746-C	rs2251746	0	2251746	intron	0	NR	5E-26	25.30102999566398		    .09	[NR] unit increase	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	12q13.3	12	57095926	STAT6, NAB2	NAB2;STAT6			4665;6778			rs1059513-C	rs1059513	0	1059513	nearGene-3;ncRNA	0	NR	2E-12	11.69897000433602		    .12	[NR] unit decrease	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	5q31.1	5	132660272	IL13	IL13			3596			rs20541-A	rs20541	0	20541	missense	0	NR	3E-18	17.52287874528034		    .08	[NR] unit increase	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	6	29881842	HLA-G	TRNAI25			100189401			rs2523809-T	rs2523809	0	2523809		0	NR	4E-8	7.397940008672037		    .06	[NR] unit increase	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p22.1	6	29956061	HLA-A	TRNAI25			100189401			rs2571391-C	rs2571391	0	2571391		0	NR	1E-15	15		    .06	[NR] unit increase	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	1q23.2	1	159205737	DARC	ACKR1			2532			rs13962-A	rs13962	0	13962	missense	0	NR	2E-11	10.69897000433602		    .09	[NR] unit decrease	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	6p21.32	6	32713500	HLA-DQA2	TRNAI25			100189401			rs2858331-G	rs2858331	0	2858331		0	NR	1E-8	8		    .04	[NR] unit decrease	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	1q23.2	1	159357090	OR10J3	OR10J7P - OR10J8P	391119	343409		        5.07	        9.07	rs4656784-G	rs4656784	0	4656784	Intergenic	1	NR	2E-16	15.69897000433602		    .08	[NR] unit increase	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	16p12.1	16	27363079	IL4R	IL4R			3566			rs1801275-G	rs1801275	0	1801275	missense	0	NR	1E-7	7		    .05	[NR] unit increase	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	2p25.1	2	8294055	ID2	LINC00299			339789			rs3102947-G	rs3102947	0	3102947	intron	0	NR	2E-7	6.698970004336019		    .06	[NR] unit decrease	Affymetrix [2,540,223] (imputed)	N
12/16/2011	22075330	Granada M	11/08/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22075330	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels 	6,819 European ancestry individuals	7,809 European ancestry indivduals	3q28	3	188724692	LPP	LPP			4026			rs9290877-C	rs9290877	0	9290877	intron	0	NR	2E-6	5.698970004336018		    .04	[NR] unit decrease	Affymetrix [2,540,223] (imputed)	N
12/03/2011	22068335	Mitchell GF	11/08/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/22068335	Common genetic variation in the 3'-BCL11B gene desert is associated with carotid-femoral pulse wave velocity and excess cardiovascular disease risk: the AortaGen Consortium.	Aortic stiffness	20,634 European ancestry individuals	5,306 European ancestry individuals	14q32.2	14	98121984	BCL11B	C14orf64 - C14orf177	388011	283598		      143.86	      589.63	rs7152623-?	rs7152623	0	7152623	Intergenic	1	NR	3E-15	14.52287874528034		    .08	[0.056-0.096] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/14/2011	22065538	Morisaki H	11/07/2011	Hum Mutat	http://www.ncbi.nlm.nih.gov/pubmed/22065538	CDH13 gene coding T-cadherin influences variations in plasma adiponectin levels in the Japanese population.	Adiponectin levels	3,310 Japanese ancestry individuals	NR	16q23.3	16	82629683	CDH13	CDH13			1012			rs12051272-?	rs12051272	0	12051272	intron	0	NR	5E-40	39.30102999566397		NR	NR	Illumina [348,622]	N
12/14/2011	22087292	Sun L	11/07/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22087292	Bivariate genome-wide association analyses of femoral neck bone geometry and appendicular lean mass.	Femoral neck bone geometry	1,627 Han Chinese individuals	2,286 European ancestry individuals	2p12	2	74847840	HK2	HK2			3099			rs681900-?	rs681900	0	681900	intron	0	NR	3E-6	5.522878745280337	(ALM-BR)	NR	NR	Affymetrix [689,368]	N
12/14/2011	22087292	Sun L	11/07/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/22087292	Bivariate genome-wide association analyses of femoral neck bone geometry and appendicular lean mass.	Femoral neck bone geometry	1,627 Han Chinese individuals	2,286 European ancestry individuals	16p12.3	16	20339909	UMOD	UMOD			7369			rs11859916-?	rs11859916	0	11859916	intron	0	NR	2E-6	5.698970004336018	(ALM-W)	NR	NR	Affymetrix [689,368]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	3p25.3	3	8766829	OXTR	OXTR			5021			rs237899-?	rs237899	0	237899	intron	0	NR	2E-6	5.698970004336018		   1.69	[1.36-2.10] 	Illumina [876,476]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	Xq21.1	23	83699482	Intergenic	POU3F4 - TERF1P4	5456	648283		      189.72	       49.34	rs5968205-?	rs5968205	0	5968205	Intergenic	1	NR	3E-6	5.522878745280337		   2.20	[1.58-3.07] 	Illumina [876,476]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	1p32.3	1	50472176	FAF1	FAF1			11124			rs3827730-?	rs3827730	0	3827730	intron	0	NR	4E-6	5.397940008672037		   1.72	[1.36-2.16] 	Illumina [876,476]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	19q13.32	19	45531300	OPA3	OPA3			80207			rs8111589-?	rs8111589	0	8111589	intron	0	NR	4E-6	5.397940008672037		   1.64	[1.33-2.03] 	Illumina [876,476]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	Xq21.1	23	83616187	Intergenic	POU3F4 - TERF1P4	5456	648283		      106.42	      132.64	rs5922838-?	rs5922838	0	5922838	Intergenic	1	NR	5E-6	5.301029995663981		   2.17	[1.55-3.02] 	Illumina [876,476]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	13q12.12	13	24084217	SPATA13	SPATA13			221178			rs9805786-?	rs9805786	0	9805786	intron	0	NR	7E-6	5.154901959985742		   1.65	[1.33-2.05] 	Illumina [876,476]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	18q21.31	18	56730391	WDR7	WDR7			23335			rs17750015-?	rs17750015	0	17750015	intron	0	NR	8E-6	5.096910013008055		   1.68	[1.34-2.11] 	Illumina [876,476]	N
12/14/2011	22064162	Edwards AC	11/05/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22064162	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NR	8p22	8	17072126	EFHA2	MICU3			286097			rs10090288-?	rs10090288	0	10090288	intron	0	NR	8E-6	5.096910013008055		   2.55	[1.69-3.84] 	Illumina [876,476]	N
12/03/2011	22055160	Bown MJ	11/04/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22055160	Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1.	Abdominal aortic aneurysm	1,866 cases, 5,435 controls	4,362 cases, 43,747 controls	12q13.3	12	57140687	LRP1	LRP1			4035			rs1466535-C	rs1466535	0	1466535	intron	0	0.58	5E-10	9.301029995663981		   1.15	[1.10-1.21] 	Illumina [535,296]	N
12/03/2011	22054870	De Jager PL	11/03/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/22054870	A genome-wide scan for common variants affecting the rate of age-related cognitive decline.	Cognitive decline	749 European ancestry individuals	2,279 European ancestry individuals	19q13.32	19	44919689	TOMM40, APOE	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	NR	4E-27	26.39794000867203		NR	NR	Affymetrix [672,266] (pooled)	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	3p21.31	3	45689959	SACM1L	SACM1L;LIMD1-AS1			22908;644714			rs2742417-T	rs2742417	0	2742417	intron;nearGene-5	0	0.49	5E-7	6.30102999566398	(Bupropion, sex)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	12q22	12	95566012	USP44	USP44 - PGAM1P5	84101	100132594		       14.53	       83.24	rs7136572-G	rs7136572	0	7136572	Intergenic	1	0.04	3E-7	6.522878745280337	(Bupropion, Sex)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	2p14	2	67746755	Intergenic	ETAA1 - C1D	54465	10438		      336.35	      295.45	rs13432159-G	rs13432159	0	13432159	Intergenic	1	0.08	9E-8	7.045757490560674	(Sertraline, General SE)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	10q11.23	10	48777065	WDFY4	WDFY4			57705			rs10857636-T	rs10857636	0	10857636	intron	0	0.06	2E-7	6.698970004336019	(Bupropion, General SE)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	7q21.11	7	78413974	MAGI2	MAGI2			9863			rs17150687-C	rs17150687	0	17150687	intron	0	0.02	3E-6	5.522878745280337	(Bupropion, Sex)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	4p15.1	4	33623080	Intergenic	MAPRE1P2 - RPL31P31	642305	727792		      611.26	      345.07	rs10517287-T	rs10517287	0	10517287	Intergenic	1	0.11	2E-7	6.698970004336019	(Citalopram+Bupropion, Vision/hearing)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	15q25.3	15	86893514	AGBL1	AGBL1			123624			rs17647114-T	rs17647114	0	17647114	intron	0	0.03	4E-7	6.397940008672037	(Citalopram+Bupropion, Vision/hearing)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	2p24.3	2	14257928	Intergenic	LINC00276			100499171			rs16861531-G	rs16861531	0	16861531	intron	0	0.03	7E-7	6.154901959985743	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	3p26.3	3	130794	CHL1	LOC101927174			101927174			rs6795349-G	rs6795349	0	6795349	intron	0	0.03	2E-6	5.698970004336018	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	4p15.33	4	13115138	Intergenic	RNA5SP156 - HSP90AB2P	100873422	391634		     1700.98	      221.25	rs491376-C	rs491376	0	491376	Intergenic	1	0.01	2E-6	5.698970004336018	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	4p15.33	4	13120911	Intergenic	RNA5SP156 - HSP90AB2P	100873422	391634		     1706.75	      215.48	rs573332-G	rs573332	0	573332	Intergenic	1	0.11	1E-6	5.999999999999999	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	6q25.3	6	157620251	ZDHHC14	ZDHHC14			79683			rs2163287-A	rs2163287	0	2163287	intron	0	0.02	3E-6	5.522878745280337	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	8q21.13	8	82991579	Intergenic	HNRNPA1P4 - RALYL	389674	138046		      699.19	     1191.64	rs7015622-C	rs7015622	0	7015622	Intergenic	1	0.01	1E-6	5.999999999999999	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	9q34.11	9	129608081	C9orf50	NTMT1			28989			rs10988449-T	rs10988449	0	10988449	nearGene-5	0	0.17	3E-6	5.522878745280337	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	15q21.2	15	49647649	DTWD1	DTWD1 - RLIMP3	56986	645453		        2.51	      146.60	rs8039808-A	rs8039808	0	8039808	Intergenic	1	0.06	5E-7	6.30102999566398	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	16p13.2	16	8279325	Intergenic	RPS26P51 - TMEM114	100271576	283953		     1152.69	      290.18	rs2034588-G	rs2034588	0	2034588	Intergenic	1	0.02	2E-6	5.698970004336018	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	22q13.1	22	37586005	LGALS2	LGALS2 - GGA1	3957	26088		        5.99	       22.38	rs12157904-G	rs12157904	0	12157904	Intergenic	1	0.07	2E-6	5.698970004336018	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	Xp21.1	23	31997259	DMD	DMD			1756			rs16990008-C	rs16990008	0	16990008	intron	0	0.02	2E-6	5.698970004336018	(Citalopram+Buspirone, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	2p14	2	67749656	Intergenic	ETAA1 - C1D	54465	10438		      339.25	      292.54	rs6724422-T	rs6724422	0	6724422	Intergenic	1	0.06	4E-7	6.397940008672037	(Sertraline, General SE)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	5p14.1	5	28340066	Intergenic	LINC01021 - LSP1P3	643401	729862		      843.67	      586.80	rs11949289-T	rs11949289	0	11949289	Intergenic	1	0.42	2E-7	6.698970004336019	(Venlafaxine, Dizziness)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	1p33	1	47453149	FOXD2	FOXD2 - RPL21P24	2306	100270880		       12.46	       44.71	rs527430-G	rs527430	0	527430	Intergenic	1	0.39	4E-7	6.397940008672037	(Citalopram+Buspirone, General SE)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22041458	Clark SL	11/01/2011	Psychol Med	http://www.ncbi.nlm.nih.gov/pubmed/22041458	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to antidepressant treatment	1,439 non-psychotic major depressive disorder cases	NR	8q24.21	8	127492252	POU5F1B	CASC8 - CASC11	727677	100270680		       10.11	      238.08	rs17766217-A	rs17766217	0	17766217	Intergenic	1	0.01	3E-7	6.522878745280337	(Citalopram+Buspirone, General SE)	NR	NR	Affymetrix [421,789]	N
12/02/2011	22051697	Du R	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22051697	Genome-wide association study reveals class I MHC-restricted T cell-associated molecule gene (CRTAM) variants interact with vitamin D levels to affect asthma exacerbations.	Asthma	395 European ancestry asthmatic children	584 Hispanic asthmatic children	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [534,290]	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	12q24.33	12	128840393	GLT1D1	SLC15A4 - GLT1D1	121260	144423		       16.40	       13.11	rs10744391-A	rs10744391	0	10744391	Intergenic	1	0.29	1E-6	5.999999999999999		    .22	[0.13-0.31] unit decrease	Affymetrix [~2.5 million] (imputed)	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	21q22.11	21	31445194	TIAM1	TIAM1			7074			rs580140-G	rs580140	0	580140	intron	0	0.28	3E-6	5.522878745280337		    .18	[0.11-0.26] unit decrease	Affymetrix [~2.5 million] (imputed)	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	9q21.11	9	69251016	TJP2	TJP2			9414			rs2282335-A	rs2282335	0	2282335	intron	0	0.36	4E-6	5.397940008672037		    .17	[0.098-0.244] unit increase	Affymetrix [~2.5 million] (imputed)	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	6q22.33	6	129895365	C6orf191	TMEM244 - L3MBTL3	253582	84456		       34.09	      123.22	rs9375674-A	rs9375674	0	9375674	Intergenic	1	0.46	6E-6	5.221848749616356		    .16	[0.089-0.227] unit increase	Affymetrix [~2.5 million] (imputed)	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	13q31.3	13	94218511	GPC6	GPC6			10082			rs1572050-A	rs1572050	0	1572050	intron	0	0.10	6E-6	5.221848749616356		    .31	[0.18-0.45] unit decrease	Affymetrix [~2.5 million] (imputed)	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	5q21.1	5	99244260	CHD1	RPS9P3 - GUSBP8	100133054	441066		      289.25	      288.37	rs17736767-G	rs17736767	0	17736767	Intergenic	1	0.27	7E-6	5.154901959985742		    .21	[0.12-0.30] unit decrease	Affymetrix [~2.5 million] (imputed)	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	11q22.3	11	110525134	ARHGAP20	FDX1 - ARHGAP20	2230	57569		       60.25	       51.90	rs12785341-C	rs12785341	0	12785341	Intergenic	1	0.09	8E-6	5.096910013008055		    .29	[0.16-0.42] unit increase	Affymetrix [~2.5 million] (imputed)	N
12/03/2011	22044751	Foster MC	11/01/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22044751	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat 	2,809 European ancestry individuals	NR	1q23.1	1	157467720	FCRL5	CYCSP52 - FCRL5	360155	83416		      339.05	       45.66	rs6686423-A	rs6686423	0	6686423	Intergenic	1	0.31	8E-6	5.096910013008055		    .19	[0.11-0.28] unit decrease	Affymetrix [~2.5 million] (imputed)	N
02/22/2012	22295569	Karunas AS	11/01/2011	Mol Biol (Mosk)	http://www.ncbi.nlm.nih.gov/pubmed/22295569	[Genome-wide association study of bronchial asthma in the Volga-Ural region of Russia].	Asthma	330 European ancestry cases, 348 European ancestry controls	202 European ancestry cases, 216 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [550,915]	N
12/08/2011	22010049	Middelberg RP	11/01/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010049	Loci affecting gamma-glutamyl transferase in adults and adolescents show age &#x000d7; SNP interaction and cardiometabolic disease associations.	Gamma gluatamyl transferase levels	12,526 European ancestry individuals	NR	1p36.13	1	16178825	Intergenic	EPHA2 - ARHGEF19	1969	128272		       22.74	       19.28	rs1497406-T	rs1497406	0	1497406	Intergenic	1	0.41	4E-8	7.397940008672037		    .08	[0.051-0.105] unit decrease	Illumina [2,380,486](imputed)	N
12/08/2011	22010049	Middelberg RP	11/01/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010049	Loci affecting gamma-glutamyl transferase in adults and adolescents show age &#x000d7; SNP interaction and cardiometabolic disease associations.	Gamma gluatamyl transferase levels	12,526 European ancestry individuals	NR	12q24.31	12	120978847	HNF1A	HNF1A			6927			rs1169288-G	rs1169288	0	1169288	missense	0	0.31	2E-18	17.69897000433602		    .13	[0.10-0.16] unit decrease	Illumina [2,380,486](imputed)	N
12/08/2011	22010049	Middelberg RP	11/01/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010049	Loci affecting gamma-glutamyl transferase in adults and adolescents show age &#x000d7; SNP interaction and cardiometabolic disease associations.	Gamma gluatamyl transferase levels	12,526 European ancestry individuals	NR	14q32.32	14	103106478	C14orf73	EXOC3L4			91828			rs944002-G	rs944002	0	944002	intron	0	0.22	5E-13	12.30102999566398		    .13	[0.094-0.164] unit increase	Illumina [2,380,486](imputed)	N
12/08/2011	22010049	Middelberg RP	11/01/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010049	Loci affecting gamma-glutamyl transferase in adults and adolescents show age &#x000d7; SNP interaction and cardiometabolic disease associations.	Gamma gluatamyl transferase levels	12,526 European ancestry individuals	NR	15q22.2	15	60585831	RORA	RORA			6095			rs340005-G	rs340005	0	340005	intron	0	0.36	2E-8	7.698970004336018		    .08	[0.055-0.113] unit decrease	Illumina [2,380,486](imputed)	N
12/08/2011	22010049	Middelberg RP	11/01/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010049	Loci affecting gamma-glutamyl transferase in adults and adolescents show age &#x000d7; SNP interaction and cardiometabolic disease associations.	Gamma gluatamyl transferase levels (interaction with age)	12,526 European ancestry individuals	4,374 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,380,486](imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	11q13.5	11	76588150	C11orf30, LRRC32	C11orf30 - LRRC32	56946	2615		       35.25	       69.37	rs2155219-T	rs2155219	0	2155219	Intergenic	1	0.47	4E-8	7.397940008672037		   1.17	[1.11-1.24] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	5q22.1	5	110810746	TMEM232, SLCA25A46	SLC25A46 - TSLP	91137	85480		       45.59	      259.33	rs17513503-G	rs17513503	0	17513503	Intergenic	1	0.09	7E-7	6.154901959985743		   1.28	[1.16-1.41] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	20p11.21	20	25226018	ENTPD6	ENTPD6			955			rs1044573-A	rs1044573	0	1044573	UTR-3	0	0.51	1E-6	5.999999999999999		   1.15	[1.09-1.21] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	5q23.1	5	116639960	SEMA6A	RPS14P8 - RPS17P2	644146	6219		       76.90	       76.26	rs6898653-G	rs6898653	0	6898653	Intergenic	1	0.22	1E-6	5.999999999999999		   1.23	[1.13-1.34] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	16p13.13	16	11065028	CLEC16A	CLEC16A			23274			rs887864-A	rs887864	0	887864	intron	0	0.63	1E-6	5.999999999999999		   1.16	[1.09-1.23] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	14q23.1	14	60216712	PPM1A, DHRS7	RPL17P2 - PPM1A	652974	5494		        3.88	       29.04	rs216518-A	rs216518	0	216518	Intergenic	1	0.15	2E-6	5.698970004336018		   1.21	[1.12-1.31] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	7p14.1	7	42225080	GLI3	GLI3			2737			rs4724100-C	rs4724100	0	4724100	intron	0	0.45	2E-6	5.698970004336018		   1.14	[1.08-1.21] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	1p36.13	1	16889836	CROCC	TRNAN2 - RNU1-2	791226	26870		         .09	        6.14	rs6586513-C	rs6586513	0	6586513	Intergenic	1	0.29	4E-6	5.397940008672037		   1.24	[1.13-1.36] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NR	5q22.1	5	111072304	TSLP	TSLP			85480			rs1898671-T	rs1898671	0	1898671	intron	0	0.35	5E-6	5.301029995663981		   1.15	[1.08-1.22] 	Affymetrix & Illumina  [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	11q13.5	11	76588150	C11orf30, LRRC32	C11orf30 - LRRC32	56946	2615		       35.25	       69.37	rs2155219-T	rs2155219	0	2155219	Intergenic	1	0.47	1E-8	8		   1.22	[1.14-1.31] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	5q22.1	5	110810746	TMEM232, SLCA25A46	SLC25A46 - TSLP	91137	85480		       45.59	      259.33	rs17513503-G	rs17513503	0	17513503	Intergenic	1	0.09	1E-8	8		   1.39	[1.24-1.56] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	6p21.32	6	32690302	HLA region	TRNAI25			100189401			rs7775228-C	rs7775228	0	7775228		0	0.13	2E-9	8.698970004336019		   1.33	[1.21-1.45] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	4q27	4	122451978	IL2	IL2			3558			rs2069772-C	rs2069772	0	2069772	intron	0	0.30	1E-6	5.999999999999999		   1.19	[1.11-1.28] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	16p13.2	16	9305867	Intergenic	RPL21P119 - RNA5SP404	653737	100873656		      148.95	      294.23	rs631208-A	rs631208	0	631208	Intergenic	1	0.60	2E-6	5.698970004336018		   1.18	[1.10-1.26] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	1p32.3	1	51393570	EPS15	EPS15			2060			rs6673480-T	rs6673480	0	6673480	intron	0	0.07	2E-6	5.698970004336018		   1.35	[1.19-1.52] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	5p15.2	5	13740867	DNAH5	DNAH5			1767			rs6554809-C	rs6554809	0	6554809	intron	0	0.84	3E-6	5.522878745280337		   1.29	[1.16-1.43] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	3q22.1	3	133009059	TMEM108	NPHP3-AS1 - TMEM108	348808	66000		      134.85	       29.23	rs7617456-G	rs7617456	0	7617456	Intergenic	1	0.59	3E-6	5.522878745280337		   1.18	[1.10-1.26] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/01/2011	22036096	Ramasamy A	11/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22036096	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 Caucasian cases, 10,032 Caucasian controls	NR	1q25.2	1	179102621	ABL2	ABL2			27			rs1325195-A	rs1325195	0	1325195	UTR-3	0	0.59	5E-6	5.301029995663981		   1.17	[1.10-1.26] 	Affymetrix & Illumina [2,217,510] (imputed)	N
12/16/2011	22037903	Crosslin DR	10/30/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037903	Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.	White blood cell count	62 American Indian or Alaska Native ancestry individuals, 158 Asian ancestry individuals, 3,272 African American ancestry individuals, 114 other ancestry individuals, 23,244 European ancestry individuals, 996 unknown ancestry individuals	NR	1q23.2	1	159205564	DARC	ACKR1			2532			rs12075-?	rs12075	0	12075	missense	0	NR	5E-24	23.30102999566398	(AA)	   1.27	[1.03-1.51] K/ul increase	Illumina [532,566]	N
12/16/2011	22037903	Crosslin DR	10/30/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037903	Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.	White blood cell count	62 American Indian or Alaska Native ancestry individuals, 158 Asian ancestry individuals, 3,272 African American ancestry individuals, 114 other ancestry individuals, 23,244 European ancestry individuals, 996 unknown ancestry individuals	NR	17q21.1	17	39972395	GSDMA	GSDMA			284110			rs3859192-?	rs3859192	0	3859192	intron	0	NR	2E-12	11.69897000433602	(EA)	    .14	[0.10-0.18] K/ul increase	Illumina [532,566]	N
12/16/2011	22037903	Crosslin DR	10/30/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037903	Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.	White blood cell count	62 American Indian or Alaska Native ancestry individuals, 158 Asian ancestry individuals, 3,272 African American ancestry individuals, 114 other ancestry individuals, 23,244 European ancestry individuals, 996 unknown ancestry individuals	NR	1q23.2	1	159204893	DARC	ACKR1			2532			rs2814778-?	rs2814778	0	2814778	UTR-5	0	NR	7E-55	54.15490195998574	(AA)	   1.35	[1.19-1.51] K/ul increase	Illumina [532,566]	N
11/24/2011	22037553	Haiman CA	10/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037553	A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer.	Breast cancer	1,004 African ancestry cases, 2,745 African ancestry controls,1,718 European ancestry cases, 3,670 European ancestry controls	2,222 European ancestry cases, 16,363 European ancestry controls	5p15.33	5	1279675	TERT	TERT			7015			rs10069690-T 	rs10069690	0	10069690	intron	0	0.26	1E-10	10		   1.18	[1.13-1.25]  	Illumina [3,154,485] (imputed)	N
12/02/2011	22037551	Shi Y	10/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037551	A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1.	Gastric cancer	1,006 Chinese ancestry cases, 2,273 Chinese ancestry controls	3,288 Chinese ancestry cases, 3,609 Chinese ancestry controls	3q13.31	3	114643917	ZBTB20	ZBTB20;LOC102723469			26137;102723469			rs9841504-?	rs9841504	0	9841504	intron;intron	0	NR	2E-9	8.698970004336019		   1.32	[1.20-1.45] 	Affymetrix [555,896]	N
12/02/2011	22037551	Shi Y	10/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037551	A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1.	Gastric cancer	1,006 Chinese ancestry cases, 2,273 Chinese ancestry controls	3,288 Chinese ancestry cases, 3,609 Chinese ancestry controls	5p13.1	5	40791782	PRKAA1, PTGER4	PRKAA1			5562			rs13361707-?	rs13361707	0	13361707	intron	0	NR	8E-29	28.09691001300805		   1.41	[1.32-1.49] 	Affymetrix [555,896]	N
12/15/2011	22037555	Shi Y	10/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037555	Common variants on 8p12 and 1q24.2 confer risk of schizophrenia.	Schizophrenia	3,750 Chinese ancestry cases, 6,468 Chinese ancestry controls	4,383 Chinese ancestry cases, 4,539 Chinese ancestry controls	1q24.2	1	167933841	BRP44, DCAF6	MPC2			25874			rs10489202-A 	rs10489202	0	10489202	intron	0	0.141 	1E-8	8		   1.23	[1.15-1.32]  	Affymetrix [546,561]	N
12/15/2011	22037555	Shi Y	10/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037555	Common variants on 8p12 and 1q24.2 confer risk of schizophrenia.	Schizophrenia	3,750 Chinese ancestry cases, 6,468 Chinese ancestry controls	4,383 Chinese ancestry cases, 4,539 Chinese ancestry controls	8p11.23	8	38173827	LSM1, WHSC1L1	LSM1			27257			rs16887244-?	rs16887244	0	16887244	intron	0	0.683	1E-10	10		   1.19	[1.14-1.27] 	Affymetrix [546,561]	N
12/02/2011	22037552	Yue WH	10/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037552	Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2.	Schizophrenia	746 Chinese ancestry cases, 1,599 Chinese ancestry controls	4,027 Chinese ancestry cases, 5,603 Chinese ancestry controls	6p22.1	6	28259826	NKAPL	NKAPL;ZKSCAN4			222698;387032			rs1635-?	rs1635	0	1635	missense;nearGene-5	0	NR	7E-12	11.15490195998574		   1.28	[1.22-1.37] 	Illumina [493,203]	N
12/02/2011	22037552	Yue WH	10/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22037552	Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2.	Schizophrenia	746 Chinese ancestry cases, 1,599 Chinese ancestry controls	4,027 Chinese ancestry cases, 5,603 Chinese ancestry controls	11p11.2	11	44821583	TSPAN18	TSPAN18			90139			rs11038167-?	rs11038167	0	11038167	intron	0	NR	1E-11	11		   1.29	[1.23-1.36] 	Illumina [493,203]	N
12/13/2011	22032556	Brockschmidt FF	10/27/2011	Br J Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22032556	Susceptibility variants on chromosome 7p21.1 suggest HDAC9 as a new candidate gene for male-pattern baldness.	Male-pattern baldness	581 European ancestry male cases, 617 European ancestry male controls	461 European ancestry male cases, 151 European ancestry male controls	Xq12	23	67343176	AR, EDA2R	EDA2R - AR	60401	367		      703.88	      200.86	rs2497938	rs2497938	0	2497938	Intergenic	1	NR	3E-22	21.52287874528033		   6.50	[4.30-9.82] 	Illumina [560,387]	N
12/13/2011	22032556	Brockschmidt FF	10/27/2011	Br J Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/22032556	Susceptibility variants on chromosome 7p21.1 suggest HDAC9 as a new candidate gene for male-pattern baldness.	Male-pattern baldness	581 European ancestry male cases, 617 European ancestry male controls	461 European ancestry male cases, 151 European ancestry male controls	20p11.22	20	21872462	Intergenic	RPL41P1 - LINC00261	22971	140828		      116.81	      688.09	rs2180439-?	rs2180439	0	2180439	Intergenic	1	NR	4E-17	16.39794000867203		   2.08	[1.76-2.47] 	Illumina [560,387]	N
11/26/2011	22027810	Forstbauer LM	10/26/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22027810	Genome-wide pooling approach identifies SPATA5 as a new susceptibility locus for alopecia areata.	Alopecia areata	729 European ancestry cases, 656 European ancestry controls	991 European ancestry cases, 2,021 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [487,932] (pooled)	N
11/24/2011	22030708	Menke A	10/26/2011	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/22030708	Genome-wide association study of antidepressant treatment-emergent suicidal ideation.	Suicidal ideation	397 European ancestry depressive disorder cases	501 European ancestry depressive disorder cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [371,335]	N
11/30/2011	22029572	Simonson MA	10/26/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/22029572	Recent methods for polygenic analysis of genome-wide data implicate an important effect of common variants on cardiovascular disease risk.	Cardiovascular disease risk factors	1,772 European ancestry individuals	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [258,891]	N
11/24/2011	22019779	Takahashi Y	10/23/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22019779	A genome-wide association study identifies common variants near LBX1 associated with adolescent idiopathic scoliosis.	Scoliosis	1,033 Japanese ancestry adolescent female cases, 1,473 Japanese ancestry female controls	326 Japanese ancestry adolescent female cases, 9,823 Japanese ancestry female controls	10q24.31	10	101219450	LBX1	RNY5P7 - LBX1	100169835	10660		       53.17	        7.53	rs11190870-?	rs11190870	0	11190870	Intergenic	1	0.57	1E-19	19		   1.56	[1.41-1.71] 	Illumina [455,121]	N
11/24/2011	22019778	Zhang F	10/23/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22019778	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Chinese ancestry cases, 5,581 Chinese ancestry controls	3,301 Chinese ancestry cases, 5,299 Chinese ancestry controls	1p31.3	1	67131436	IL23R	C1orf141			400757			rs3762318-A	rs3762318	0	3762318	intron	0	0.10	3E-11	10.52287874528034		   1.45	[1.30-1.61] 	NR [1,701,673] (imputed)	N
11/24/2011	22019778	Zhang F	10/23/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22019778	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Chinese ancestry cases, 5,581 Chinese ancestry controls	3,301 Chinese ancestry cases, 5,299 Chinese ancestry controls	6q24.3	6	146597814	RAB32	ADGB;LOC101928661			79747;101928661			rs2275606-A	rs2275606	0	2275606	nearGene-5;intron	0	0.21	4E-14	13.39794000867204		   1.30	[1.21-1.39] 	NR [1,701,673] (imputed)	N
11/24/2011	22019778	Zhang F	10/23/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22019778	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Chinese ancestry cases, 5,581 Chinese ancestry controls	3,301 Chinese ancestry cases, 5,299 Chinese ancestry controls	11q13.1	11	64362250	RPS6KA4	RPS6KA4			8986			rs538147-A	rs538147	0	538147	intron	0	0.23	7E-6	5.154901959985742		   1.17	[1.09-1.25] 	NR [1,701,673] (imputed)	N
11/24/2011	22019778	Zhang F	10/23/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22019778	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Chinese ancestry cases, 5,581 Chinese ancestry controls	3,301 Chinese ancestry cases, 5,299 Chinese ancestry controls	16q12.1	16	50820507	CYLD	CYLD - RNA5SP426	1540	100873677		       18.57	       48.95	rs16948876-A	rs16948876	0	16948876	Intergenic	1	0.03	2E-10	9.698970004336017		   1.56	[1.36-1.79] 	NR [1,701,673] (imputed)	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	17q22	17	55680426	TMEM100, PCTP	MMD - TMEM100	23531	55273		      258.43	       39.20	rs1549519-T	rs1549519	0	1549519	Intergenic	1	0.20	6E-9	8.221848749616356		    .05	[0.024-0.072] unit decrease	Affymetrix [855,034]	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	Xp22.33	23	2967682	ARSE	ARSE			415			rs12393627-G	rs12393627	0	12393627	intron	0	0.37	5E-12	11.30102999566398		    .09	[0.056-0.130] unit increase	Affymetrix [855,034]	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	4p15.31	4	17918188	LCORL	LCORL			254251			rs925098-G	rs925098	0	925098	intron	0	0.35	3E-14	13.52287874528034		    .06	[0.036-0.076] unit increase	Affymetrix [855,034]	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	11q13.5	11	75565133	SERPINH1	SERPINH1			871			rs606452-C	rs606452	0	606452	intron	0	0.64	2E-9	8.698970004336019		    .04	[0.023-0.063] unit decrease	Affymetrix [855,034]	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	12q14.3	12	65978100	HMGA2	HMGA2 - MIR6074	8091	102464827		       11.81	       45.52	rs7968682-T	rs7968682	0	7968682	Intergenic	1	0.58	4E-10	9.397940008672037		    .04	[0.025-0.061] unit decrease	Affymetrix [855,034]	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	17q23.3	17	63685671	MAP3K3	MAP3K3;LOC101927898			4215;101927898			rs11658329-G	rs11658329	0	11658329	intron;intron	0	0.30	5E-10	9.301029995663981		    .05	[0.029-0.069] unit decrease	Affymetrix [855,034]	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	17q24.2	17	66783312	PRKCA	PRKCA			5578			rs3889237-C	rs3889237	0	3889237	intron	0	0.14	3E-8	7.522878745280337		    .06	[0.029-0.083] unit decrease	Affymetrix [855,034]	N
11/25/2011	22021425	Carty CL	10/21/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22021425	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American ancestry women	Up to 20,809 African American ancestry and African ancestry individuals	18q21.1	18	49061284	DYM	DYM			54808			rs1787200-T	rs1787200	0	1787200	intron	0	0.37	7E-10	9.154901959985741		    .04	[0.024-0.064] unit increase	Affymetrix [855,034]	N
11/24/2011	22020760	Won HH	10/21/2011	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22020760	Polymorphic markers associated with severe oxaliplatin-induced, chronic peripheral neuropathy in colon cancer patients.	Response to platinum-based agents	96 colon cancer cases 	247 colon cancer cases	7q21.3	7	97600466	TAC1	RPL7AP40 - TAC1	442712	6863		      399.00	      131.49	rs10486003-?	rs10486003	0	10486003	Intergenic	1	NR	5E-7	6.30102999566398		   3.13	[1.92-5.26] 	Affymetrix [656,843]	N
11/24/2011	22020760	Won HH	10/21/2011	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22020760	Polymorphic markers associated with severe oxaliplatin-induced, chronic peripheral neuropathy in colon cancer patients.	Response to platinum-based agents	96 colon cancer cases 	247 colon cancer cases	6p25.3	6	1573378	FOXC1, GMDS	ELF2P2 - FOXC1	260335	2296		       57.80	       37.07	rs2338-?	rs2338	0	2338	Intergenic	1	NR	5E-6	5.301029995663981		   2.27	[1.58-3.26] 	Affymetrix [656,843]	N
11/24/2011	22020760	Won HH	10/21/2011	Cancer	http://www.ncbi.nlm.nih.gov/pubmed/22020760	Polymorphic markers associated with severe oxaliplatin-induced, chronic peripheral neuropathy in colon cancer patients.	Response to platinum-based agents	96 colon cancer cases 	247 colon cancer cases	5q11.2	5	52724562	ITGA1, PELO	RPS17P11 - PELO	100271072	53918		      441.70	       63.38	rs830884-?	rs830884	0	830884	Intergenic	1	NR	2E-6	5.698970004336018		   3.13	[1.85-5.26] 	Affymetrix [656,843]	N
11/30/2011	22028671	Surakka I	10/20/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/22028671	A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.	Lipid traits	Up to 32,225 European ancestry individuals	22,702 European ancestry individuals	4p15.1	4	31395996	PCDH7	PCDH7 - MAPRE1P2	5099	642305		      249.20	     1613.27	rs6448771-?	rs6448771	0	6448771	Intergenic	1	NR	5E-9	8.301029995663981		    .03	[-0.00728-0.06328] unit increase	Affymetrix, Illumina & Perlegen [~2.5 million] (imputed)	N
11/30/2011	22012869	Hinney A	10/19/2011	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22012869	Genome-wide association study in German patients with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	495 European ancestry child and adolescent cases, 1,300 European ancestry adult controls	1023 individuals (from 320 families with at least one affected child), 896 controls and 2455 cases (from 2064 trios)	2p16.1	2	60535367	BCL11A	BCL11A			53335			rs2556378-T	rs2556378	0	2556378	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [487,484]	N
11/30/2011	22012869	Hinney A	10/19/2011	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/22012869	Genome-wide association study in German patients with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	495 European ancestry child and adolescent cases, 1,300 European ancestry adult controls	1023 individuals (from 320 families with at least one affected child), 896 controls and 2455 cases (from 2064 trios)	11q14.3	11	89008492	GRM5	GRM5			2915			rs5016282-A	rs5016282	0	5016282	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [487,484]	N
11/24/2011	22013104	Melka MG	10/19/2011	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/22013104	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity and blood pressure	598 European ancestry adolescent individuals	NR	9p13.2	9	36969208	PAX5	PAX5			5079			rs16933812-?	rs16933812	0	16933812	intron	0	NR	5E-6	5.301029995663981	(BMI)	NR	NR	Illumina [530,011]	N
11/24/2011	22013104	Melka MG	10/19/2011	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/22013104	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity and blood pressure	598 European ancestry adolescent individuals	NR	3q23	3	139185143	MRPS22	BPESC1 - PISRT1	60467	140464		       59.98	       47.85	rs7638110-?	rs7638110	0	7638110	Intergenic	1	NR	5E-8	7.30102999566398	(BMI)	NR	NR	Illumina [530,011]	N
11/24/2011	22013104	Melka MG	10/19/2011	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/22013104	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity and blood pressure	598 European ancestry adolescent individuals	NR	9p13.2	9	36969208	PAX5	PAX5			5079			rs16933812-?	rs16933812	0	16933812	intron	0	NR	9E-9	8.045757490560675	(TFM)	NR	NR	Illumina [530,011]	N
11/24/2011	22013104	Melka MG	10/19/2011	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/22013104	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity and blood pressure	598 European ancestry adolescent individuals	NR	3q23	3	139185143	MRPS22	BPESC1 - PISRT1	60467	140464		       59.98	       47.85	rs7638110-?	rs7638110	0	7638110	Intergenic	1	NR	2E-6	5.698970004336018	(TFM)	NR	NR	Illumina [530,011]	N
11/24/2011	22013104	Melka MG	10/19/2011	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/22013104	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity and blood pressure	598 European ancestry adolescent individuals	NR	18q21.32	18	60295884	MC4R	RPS3AP49 - MC4R	400652	4160		      145.48	       75.45	rs17773430-?	rs17773430	0	17773430	Intergenic	1	NR	6E-6	5.221848749616356	(BMI)	NR	NR	Illumina [530,011]	N
11/18/2011	22004471	Frank J	10/18/2011	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22004471	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry cases, 2,168 European ancestry controls	NR	2q35	2	216028914	NR	MREG - PECR	55686	55825		       15.29	        2.79	rs1344694-?	rs1344694	0	1344694	Intergenic	1	NR	5E-6	5.301029995663981		   1.27	[1.15-1.41] 	Illumina [463,044]	N
11/18/2011	22004471	Frank J	10/18/2011	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22004471	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry cases, 2,168 European ancestry controls	NR	3p22.3	3	32198627	GPD1L	RPSAP11 - CMTM8	645326	152189		        6.93	       40.05	rs9825310-?	rs9825310	0	9825310	Intergenic	1	NR	8E-6	5.096910013008055		   1.25	[1.14-1.38] 	Illumina [463,044]	N
11/18/2011	22004471	Frank J	10/18/2011	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22004471	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry cases, 2,168 European ancestry controls	NR	4p16.2	4	4717767	NR	STX18-AS1 - MSX1	100507266	4487		        6.83	      141.90	rs1000579-?	rs1000579	0	1000579	Intergenic	1	NR	4E-7	6.397940008672037		   1.30	[1.17-1.43] 	Illumina [463,044]	N
11/18/2011	22004471	Frank J	10/18/2011	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22004471	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry cases, 2,168 European ancestry controls	NR	4q23	4	99329262	ADH1B, ADH1C	ADH1B - ADH1C	125	126		        7.82	        7.23	rs1789891-?	rs1789891	0	1789891	Intergenic	1	NR	1E-8	8		   1.46	[1.28-1.67] 	Illumina [463,044]	N
11/18/2011	22004471	Frank J	10/18/2011	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22004471	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry cases, 2,168 European ancestry controls	NR	13q12.12	13	23180988	NR	SGCG			6445			rs4770403-?	rs4770403	0	4770403	intron	0	NR	6E-6	5.221848749616356		   1.33	[1.17-1.50] 	Illumina [463,044]	N
11/18/2011	22004471	Frank J	10/18/2011	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/22004471	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry cases, 2,168 European ancestry controls	NR	14q24.2	14	70928887	NR	PCNX			22990			rs2810114-?	rs2810114	0	2810114	intron	0	NR	4E-6	5.397940008672037		   1.29	[1.16-1.44] 	Illumina [463,044]	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	10q22.1	10	69778536	RP11-242G20.2	C10orf35 - RPL5P26	219738	100271206		      144.94	         .35	rs4746003-?	rs4746003	0	4746003	Intergenic	1	0.25	6E-6	5.221848749616356	(AD+PvControl)	   1.30	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	17q25.3	17	77948568	AC015804.1	FLJ45079 - TNRC6C	400624	57690		       64.48	       55.55	rs16970672-?	rs16970672	0	16970672	Intergenic	1	0.29	2E-6	5.698970004336018	(AD+PvControl)	   1.29	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	4p16.1	4	10060702	SLC2A9	RNA5SP154 - WDR1	100873420	9948		      267.84	       13.64	rs6834555-?	rs6834555	0	6834555	Intergenic	1	0.21	3E-7	6.522878745280337	(AD+PvControl)	   1.40	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	2p24.2	2	17593765	VSNL1	VSNL1			7447			rs4038131-?	rs4038131	0	4038131	intron	0	NR	6E-7	6.221848749616355	(AD+PvControl)	   1.54	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	9p21.1	9	31546474	RP11-291J9.2	LINC01243 - HMGB3P23	101929620	100288563		      164.98	       96.87	rs4576506-?	rs4576506	0	4576506	Intergenic	1	0.06	1E-6	5.999999999999999	(AD+PvControl)	   1.66	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	2q14.3	2	127094445	BIN1	BIN1			274			rs10207628-?	rs10207628	0	10207628	intron	0	NR	1E-6	5.999999999999999	(AD+PvControl)	   1.41	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	3q13.2	3	113103475	RP11-572M11.4	C3orf17 - BOC	25871	91653		       83.62	      108.01	rs9811423-?	rs9811423	0	9811423	Intergenic	1	0.47	4E-6	5.397940008672037	(AD+PvControl)	   1.28	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	4p16.1	4	10048517	SLC2A9	RNA5SP154 - WDR1	100873420	9948		      255.66	       25.82	rs733175-?	rs733175	0	733175	Intergenic	1	0.18	5E-6	5.301029995663981	(AD+PvControl)	   1.37	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	11q14.2	11	86127766	AP003097.1	PICALM - FNTAP1	8301	283226		       57.89	       67.37	rs10792830-?	rs10792830	0	10792830	Intergenic	1	0.44	6E-6	5.221848749616356	(AD+PvControl)	   1.25	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	12q24.33	12	130537465	RIMBP2	LOC102724399			102724399			rs1464108-?	rs1464108	0	1464108	intron	0	0.32	8E-6	5.096910013008055	(AD+PvControl)	   1.28	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	10p12.1	10	28216015	MPP7	MPP7			143098			rs11006923-?	rs11006923	0	11006923	intron	0	NR	9E-6	5.045757490560675	(AD+PvControl)	   1.59	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	4q12	4	55802265	AC110611.1	NMU - EXOC1	10874	55763		      165.97	       51.37	rs753129-?	rs753129	0	753129	Intergenic	1	NR	3E-7	6.522878745280337	(Unaffected controls)	   1.52	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	2p16.3	2	47658337	AC079250.1	KCNK12 - RPL18AP6	56660	285053		       88.01	       32.33	rs2969775-?	rs2969775	0	2969775	Intergenic	1	NR	2E-6	5.698970004336018	(Unaffected controls)	   1.47	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	5q23.2	5	123821728	AC008541.1	KRT18P16 - HMGB1P29	391827	100873892		      184.26	      398.85	rs257016-?	rs257016	0	257016	Intergenic	1	NR	4E-6	5.397940008672037	(Unaffected controls)	   1.43	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	19q13.41	19	52880932	ZNF320	ZNF320			162967			rs6509701-?	rs6509701	0	6509701	cds-synon	0	NR	5E-6	5.301029995663981	(Unaffected controls)	   1.41	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	9q31.1	9	103261938	RP11-341A22.2	LOC101928496			101928496			rs16922670-?	rs16922670	0	16922670	intron	0	0.14	7E-6	5.154901959985742	(Unaffected controls)	   1.63	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	19p13.3	19	1207239	STK11	STK11			6794			rs3764640-?	rs3764640	0	3764640	intron	0	NR	8E-6	5.096910013008055	(Unaffected controls)	   1.47	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005930	Hollingworth P	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005930	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Alzheimer's disease	1,299 European ancestry, African American ancestry and Native American ancestry cases with psychosis, 735 European ancestry, African American ancestry and Native American ancestry cases without psychosis, 5,659 European ancestry, African American ancestry and Native American ancestry controls	NR	10p15.3	10	520439	DIP2C	DIP2C			22982			rs11252926-?	rs11252926	0	11252926	intron	0	NR	8E-6	5.096910013008055	(Unaffected controls)	   1.39	[NR] 	Illumina [>1.8 million] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	3p26.1	3	6336008	NR	MRPS35P1 - MRPS36P1	339910	347705		      888.91	      437.03	rs271066-?	rs271066	0	271066	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	3p14.1	3	64941350	ADAMTS9	ADAMTS9-AS2			100507098			rs704454-?	rs704454	0	704454	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	4p15.1	4	33201518	NR	MAPRE1P2 - RPL31P31	642305	727792		      189.70	      766.63	rs10517270-?	rs10517270	0	10517270	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	4q31.3	4	154426241	DCHS2	DCHS2			54798			rs1466662-?	rs1466662	0	1466662	intron	0	NR	5E-7	6.30102999566398		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	6p21.31	6	33857581	MIR1275, LEMD2, MLN	TRNAI25			100189401			rs2104362-?	rs2104362	0	2104362		0	NR	7E-6	5.154901959985742		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	9p24.2	9	2742771	KCNV2, VLDLR	KCNV2 - KIAA0020	169522	9933		       12.73	       61.38	rs2034764-?	rs2034764	0	2034764	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	12q24.22	12	116857528	HRK, RNFT2	RPL21P105 - HRK	728693	8739		      101.61	        2.89	rs17429217-?	rs17429217	0	17429217	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	15q25.3	15	84887738	SLC28A1, ZNF592, ALPK3	SLC28A1			9154			rs3743162-?	rs3743162	0	3743162	intron	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	16q24.2	16	87078024	NR	FOXL1 - RPL39P30	2300	100271519		      496.33	      190.11	rs12933233-?	rs12933233	0	12933233	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	18q21.32	18	59084822	LOC390958, Sec11C	OACYLP - SEC11C	390858	90701		       31.61	       55.06	rs1037757-?	rs1037757	0	1037757	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	19q13.32	19	44888997	PVRL2	PVRL2			5819			rs6857-?	rs6857	0	6857	UTR-3	0	NR	2E-10	9.698970004336017		NR	NR	Illumina [2,543,888] (imputed)	N
11/19/2011	22005931	Kamboh MI	10/18/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/22005931	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	2,222 cases	NR	19q13.32	19	44919689	APOE, TOMM40, APOC1	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	NR	1E-12	12		NR	NR	Illumina [2,543,888] (imputed)	N
11/08/2011	21989058	Qin Y	10/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21989058	Association of 8q22.3 locus in Chinese Han with idiopathic premature ovarian failure (POF).	Premature ovarian failure	391 Chinese ancestry cases, 895 Chinese ancestry controls	400 Chinese ancestry cases, 800 Chinese ancestry controls	8q22.3	8	100800928	Intergenic	RPS20P23 - RPS26P6	100271089	392256		       24.06	       94.81	rs3847153-?	rs3847153	0	3847153	Intergenic	1	0.38	9E-8	7.045757490560674		   1.42	[NR] 	Affymetrix [642,069]	N
11/09/2011	22010048	Wu X	10/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010048	A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23.	Renal cell carcinoma	894 European ancestry cases, 1,516 European ancestry controls	3,772 European ancestry cases, 8,505 European ancestry controls	12p12.1	12	26300350	ITPR2	SSPN - ITPR2	8082	3709		       65.57	       35.00	rs718314-?	rs718314	0	718314	Intergenic	1	NR	9E-10	9.045757490560675		   1.19	[1.13-1.26] 	Illumina [533,191]	N
11/09/2011	22010048	Wu X	10/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010048	A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23.	Renal cell carcinoma	894 European ancestry cases, 1,516 European ancestry controls	3,772 European ancestry cases, 8,505 European ancestry controls	11q13.3	11	69419726	NR	IFITM9P - CCND1	390218	595		      115.92	      221.38	rs4980785-?	rs4980785	0	4980785	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [533,191]	N
11/09/2011	22010048	Wu X	10/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/22010048	A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23.	Renal cell carcinoma	894 European ancestry cases, 1,516 European ancestry controls	3,772 European ancestry cases, 8,505 European ancestry controls	6q22.31	6	118486684	NR	CEP85L			387119			rs25422-?	rs25422	0	25422	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [533,191]	N
11/15/2011	22006218	Yoon D	10/18/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22006218	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American ancestry individuals, 671 European ancestry individuals	5q33.2	5	155775518	Intergenic	PPIGP1 - SGCD	100131033	6444		      281.71	      259.62	rs11134474-?	rs11134474	0	11134474	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [352,228]	N
11/15/2011	22006218	Yoon D	10/18/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22006218	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American ancestry individuals, 671 European ancestry individuals	7q31.1	7	108904404	Intergenic	C7orf66 - EIF3IP1	154907	442720		       19.82	     1054.82	rs1404697-?	rs1404697	0	1404697	Intergenic	1	NR	8E-6	5.096910013008055	(Heaviness of Smoking Index)	NR	NR	Affymetrix [352,228]	N
11/15/2011	22006218	Yoon D	10/18/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22006218	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American ancestry individuals, 671 European ancestry individuals	7q31.1	7	108904404	Intergenic	C7orf66 - EIF3IP1	154907	442720		       19.82	     1054.82	rs1404697-?	rs1404697	0	1404697	Intergenic	1	NR	5E-6	5.301029995663981	(Fagerstrom test for nicotine dependence)	NR	NR	Affymetrix [352,228]	N
11/15/2011	22006218	Yoon D	10/18/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22006218	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American ancestry individuals, 671 European ancestry individuals	7q31.1	7	108908603	C7orf66, LOC154907, PNPLA8, THAP5, DNAJB9	C7orf66 - EIF3IP1	154907	442720		       24.02	     1050.62	rs848353-?	rs848353	0	848353	Intergenic	1	NR	2E-6	5.698970004336018	(Cigarettes smoked per day)	NR	NR	Affymetrix [352,228]	N
11/15/2011	22006218	Yoon D	10/18/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22006218	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American ancestry individuals, 671 European ancestry individuals	7q31.1	7	108908603	C7orf66, LOC154907, PNPLA8, THAP5, DNAJB9	C7orf66 - EIF3IP1	154907	442720		       24.02	     1050.62	rs848353-?	rs848353	0	848353	Intergenic	1	NR	9E-7	6.045757490560675	(Heaviness of Smoking Index)	NR	NR	Affymetrix [352,228]	N
11/15/2011	22006218	Yoon D	10/18/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/22006218	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Smoking behavior	8,842 Korean ancestry individuals	1,366 African American ancestry individuals, 671 European ancestry individuals	7q31.1	7	108908603	C7orf66, LOC154907, PNPLA8, THAP5, DNAJB9	C7orf66 - EIF3IP1	154907	442720		       24.02	     1050.62	rs848353-?	rs848353	0	848353	Intergenic	1	NR	3E-7	6.522878745280337	(Fagerstrom test for nicotine dependence)	NR	NR	Affymetrix [352,228]	N
11/12/2011	22004975	Li R	10/17/2011	Lupus	http://www.ncbi.nlm.nih.gov/pubmed/22004975	Association of CD247 with systemic lupus erythematosus in Asian populations.	Systemic lupus erythematosus	612 Chinese ancestry cases, 2,193 Chinese ancestry controls	3,339 Chinese ancestry cases and South Asian ancestry cases, 4,737 Chinese ancestry controls and South Asian ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	4q22.1	4	87292656	HSD17B13, MAPK10	GAPDHP60 - MIR5705	2601	100847027		       84.36	        7.84	rs6834314-A	rs6834314	0	6834314	Intergenic	1	0.75	3E-9	8.522878745280337		   2.60	[1.90-3.40] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	8q24.13	8	125469835	TRIB1	TRIB1 - LINC00861	10221	100130231		       31.43	      452.69	rs2954021-A	rs2954021	0	2954021	Intergenic	1	0.50	5E-9	8.301029995663981		   1.60	[0.60-2.60] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	10q24.2	10	100035604	CPN1	DNMBP-AS1 - CPN1	100188954	1369		       76.61	        6.70	rs10883437-T	rs10883437	0	10883437	Intergenic	1	0.64	4E-9	8.397940008672036		   2.30	[1.40-3.10] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	22q13.31	22	43928847	PNPLA3, SAMM50	PNPLA3			80339			rs738409-G	rs738409	0	738409	missense	0	0.23	1E-45	44.99999999999999		   6.00	[5.0-7.0] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	1p36.12	1	21439960	ALPL, NBPF3	NBPF3			84224			rs1976403-C	rs1976403	0	1976403	nearGene-5	0	0.40	2E-50	49.69897000433602		   3.60	[3.0-4.2] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	2q31.1	2	168984064	ABCB11	ABCB11			8647			rs16856332-T	rs16856332	0	16856332	intron	0	0.96	2E-9	8.698970004336019		   3.90	[1.20-6.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	6p22.3	6	24491247	ALDH5A1, GPLD1	GPLD1			2822			rs1883415-C	rs1883415	0	1883415	nearGene-5	0	0.33	6E-26	25.22184874961635		   3.10	[2.50-3.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	8p23.1	8	9320758	PPP1R3B	PPP1R3B - TNKS	79660	8658		      169.12	      234.49	rs6984305-A	rs6984305	0	6984305	Intergenic	1	0.11	2E-10	9.698970004336017		   2.70	[1.10-4.40] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	8q24.13	8	125469835	TRIB1	TRIB1 - LINC00861	10221	100130231		       31.43	      452.69	rs2954021-A	rs2954021	0	2954021	Intergenic	1	0.50	2E-13	12.69897000433602		   1.40	[0.50-2.30] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	9q31.1	9	101460951	ALDOB, C9orf125	ALDOB - TMEM246	229	84302		       25.17	       12.21	rs10819937-C	rs10819937	0	10819937	Intergenic	1	0.17	1E-9	8.999999999999998		   2.50	[1.40-3.60] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-T	rs579459	0	579459	Intergenic	1	0.80	3E-123	122.5228787452803		   8.80	[7.40-10.2] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	10q21.3	10	63374062	JMJD1C, NRBF2	JMJD1C;MIR1296			221037;100302150			rs7923609-G	rs7923609	0	7923609	intron;nearGene-5	0	0.50	6E-23	22.22184874961636		   2.20	[1.70-2.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	11q12.2	11	61855668	C11orf10, FADS1, FADS2	FADS2			9415			rs174601-T	rs174601	0	174601	intron	0	0.35	3E-9	8.522878745280337		   1.70	[0.80-2.60] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	11q24.2	11	126413890	ST3GAL4	ST3GAL4			6484			rs2236653-T	rs2236653	0	2236653	intron	0	0.42	2E-9	8.698970004336019		   1.50	[0.60-2.50] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	16q22.2	16	72186474	HPR, PMFBP1	PMFBP1 - KRT18P18	83449	342374		       14.02	      542.09	rs7186908-C	rs7186908	0	7186908	Intergenic	1	0.24	5E-9	8.301029995663981		   2.00	[1.10-2.90] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	17p13.1	17	7188331	ASGR1, DLG4	ASGR1 - DLG4	432	1742		        8.77	        1.56	rs314253-C	rs314253	0	314253	Intergenic	1	0.33	8E-12	11.09691001300806		   2.10	[1.50-2.80] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	19q13.33	19	48703346	FUT2	FUT2			2524			rs281377-T	rs281377	0	281377	cds-synon	0	0.43	1E-15	15		   1.80	[0.80-2.80] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	20p11.21	20	25317451	ABHD12,GINS1, PYGB	ABHD12			26090			rs7267979-G	rs7267979	0	7267979	intron	0	0.57	7E-10	9.154901959985741		   1.50	[0.90-2.0] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	1p36.13	1	16178825	RSG1, EPHA2	EPHA2 - ARHGEF19	1969	128272		       22.74	       19.28	rs1497406-G	rs1497406	0	1497406	Intergenic	1	0.56	3E-19	18.52287874528033		   3.80	[2.70-4.80] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	1p22.2	1	88680551	CCBL2, PKN2	LOC101927891			101927891			rs12145922-A	rs12145922	0	12145922	intron	0	0.61	4E-11	10.39794000867204		   2.80	[2.20-3.40] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	1p13.3	1	111141654	CEPT1, DENND2D	CEPT1;DRAM2			10390;128338			rs1335645-A	rs1335645	0	1335645	intron;nearGene-5	0	0.88	7E-9	8.154901959985743		   4.30	[3.50-5.20] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	1q22	1	155154472	DPM3, EFNA1, PKLR	HMGN2P18 - KRTCAP2	648822	200185		        4.19	       14.94	rs10908458-T	rs10908458	0	10908458	Intergenic	1	0.58	2E-15	14.69897000433602		   3.70	[3.10-4.20] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	2p23.3	2	27508073	C2orf16, GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.38	4E-13	12.39794000867204		   3.20	[2.40-4.0] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	2q32.3	2	191252512	MYO1B, STAT4	MYO1B			4430			rs13030978-T	rs13030978	0	13030978	intron	0	0.32	1E-11	11		   3.70	[2.80-4.6] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	2q37.1	2	232648465	EFHD1, LOC100129166	EFHD1			80303			rs2140773-A	rs2140773	0	2140773	intron	0	0.61	1E-9	8.999999999999998		   2.90	[2.30-3.50] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	3q26.2	3	171007753	SLC2A2	SLC2A2			6514			rs10513686-A	rs10513686	0	10513686	intron	0	0.14	6E-11	10.22184874961635		   4.90	[4.00-5.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	4q31.21	4	145873469	ZNF827	ZNF827			152485			rs4547811-C	rs4547811	0	4547811	intron	0	0.18	3E-27	26.52287874528033		   6.40	[5.00-7.90] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	5p13.3	5	31020414	CDH6	HPRTP2 - RPL19P11	3254	100270950		      770.93	       33.11	rs6888304-A	rs6888304	0	6888304	Intergenic	1	0.74	1E-9	8.999999999999998		   2.70	[2.00-3.50] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	5q11.2	5	52897294	ITGA1	ITGA1			3672			rs4074793-G	rs4074793	0	4074793	intron	0	0.07	3E-10	9.522878745280336		   5.50	[3.30-7.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	6p12.1	6	54059899	MLIP	MLIP			90523			rs9296736-T	rs9296736	0	9296736	intron	0	0.31	3E-9	8.522878745280337		   3.00	[2.10-4.00] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	7q11.23	7	73612048	MLXIPL	MLXIPL			51085			rs17145750-C	rs17145750	0	17145750	intron	0	0.86	3E-9	8.522878745280337		   4.50	[2.90-6.30] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	10q22.3	10	77920676	DLG5	DLG5			9231			rs754466-T	rs754466	0	754466	intron	0	0.24	6E-10	9.221848749616356		   3.50	[2.20-4.80] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	12q24.31	12	120987058	HNF1A, C12orf27	HNF1A			6927			rs7310409-G	rs7310409	0	7310409	intron	0	0.59	7E-45	44.15490195998574		   6.80	[5.70-7.80] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	14q32.32	14	103106478	C14orf73	EXOC3L4			91828			rs944002-G	rs944002	0	944002	intron	0	0.21	6E-29	28.22184874961635		   6.30	[4.90-7.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	15q22.2	15	60591082	RORA	RORA			6095			rs339969-A	rs339969	0	339969	intron	0	0.62	7E-20	19.15490195998574		   4.50	[3.90-5.10] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	15q24.1	15	73685996	CD276	CD276			80381			rs8038465-T	rs8038465	0	8038465	intron	0	0.39	1E-9	8.999999999999998		   2.40	[1.80-3.00] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	16q23.2	16	80463704	DYNLRB2	MAF - DYNLRB2	4094	83657		      862.98	       77.25	rs4581712-A	rs4581712	0	4581712	Intergenic	1	0.27	3E-9	8.522878745280337		   3.20	[2.50-3.90] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	17q24.3	17	72102020	FLJ37644, SOX9	SOX9-AS1			400618			rs9913711-C	rs9913711	0	9913711	intron	0	0.65	1E-9	8.999999999999998		   2.40	[1.80-3.00] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	18q21.31	18	57655270	ATP8B1	ATP8B1;LOC100505549			5205;100505549			rs12968116-C	rs12968116	0	12968116	missense;intron	0	0.87	9E-10	9.045757490560675		   4.80	[2.80-6.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	18q21.31	18	58416822	NEDD4L	NEDD4L - MIR122	23327	406906		       15.28	       34.25	rs4503880-T	rs4503880	0	4503880	Intergenic	1	0.21	3E-12	11.52287874528034		   3.60	[2.50-4.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	19q13.33	19	48702915	FUT2	FUT2			2524			rs516246-T	rs516246	0	516246	intron	0	0.47	8E-10	9.096910013008054		   2.30	[1.80-2.90] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	22q11.21	22	17957192	MICAL3	MICAL3			57553			rs1076540-C	rs1076540	0	1076540	intron	0	0.78	1E-16	16		   4.80	[3.50-6.10] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	22q11.23	22	23953099	DDT, DDTL, GSTT1, GSTT2B, MIF	MIF - GSTT2B	4282	653689		       57.88	        4.32	rs2739330-T	rs2739330	0	2739330	Intergenic	1	0.42	2E-9	8.698970004336019		   3.70	[2.70-4.60] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/18/2011	22001757	Chambers JC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001757	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian individuals	NR	22q11.23	22	24603137	GGT1, GGTLC2	GGT1			2678			rs2073398-G	rs2073398	0	2073398	intron	0	0.34	1E-109	109		  12.30	[10.90-13.70] % increase	Affymetrix, Illumina, and Perlegen [~2.6 million] (imputed)	N
11/09/2011	22001756	Khor CC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001756	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome 	2,008 Vietnamese ancestry cases, 2,018 Vietnamese ancestry controls	1,737 Vietnamese ancestry cases, 2,934 Vietnamese ancestry controls	6p21.33	6	31507709	MICB	MICB			4277			rs3132468-?	rs3132468	0	3132468	intron	0	0.13	4E-11	10.39794000867204		   1.34	[1.23-1.46] 	Illumina [481,342]	N
11/09/2011	22001756	Khor CC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001756	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome 	2,008 Vietnamese ancestry cases, 2,018 Vietnamese ancestry controls	1,737 Vietnamese ancestry cases, 2,934 Vietnamese ancestry controls	8q11.23	8	54527508	NR	SEC11B - RP1	157708	6101		        4.13	       88.56	rs10104997-?	rs10104997	0	10104997	Intergenic	1	NR	9E-7	6.045757490560675		   1.20	[NR] 	Illumina [481,342]	N
11/09/2011	22001756	Khor CC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001756	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome 	2,008 Vietnamese ancestry cases, 2,018 Vietnamese ancestry controls	1,737 Vietnamese ancestry cases, 2,934 Vietnamese ancestry controls	10q23.33	10	94298541	PLCE1	PLCE1			51196			rs3765524-?	rs3765524	0	3765524	missense	0	0.70	3E-10	9.522878745280336		   1.25	[1.16-1.33] 	Illumina [481,342]	N
11/09/2011	22001756	Khor CC	10/16/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/22001756	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome 	2,008 Vietnamese ancestry cases, 2,018 Vietnamese ancestry controls	1,737 Vietnamese ancestry cases, 2,934 Vietnamese ancestry controls	16p13.3	16	6767374	NR	RBFOX1			54715			rs6500818-?	rs6500818	0	6500818	intron	0	NR	2E-7	6.698970004336019		   1.31	[NR] 	Illumina [481,342]	N
11/15/2011	22003120	Burdon KP	10/14/2011	Invest Ophthalmol Vis Sci	http://www.ncbi.nlm.nih.gov/pubmed/22003120	Association of polymorphisms in the hepatocyte growth factor gene promoter with keratoconus.	Corneal structure	319 European ancestry cases, 3,462 European ancestry controls	615 European ancestry cases, 702 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [745,982] (pooled)	N
11/16/2011	22003152	Grallert H	10/14/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/22003152	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 Other ancestry individuals	NA	19q13.32	19	44919689	APOC1	APOC1			341			rs4420638-A	rs4420638	0	4420638	nearGene-3	0	0.84	5E-30	29.30102999566398	(Activity concentrations)	    .05	[0.044-0.064] unit decrease	Affymetrix & Illumina [2,661,766] (imputed)	N
11/16/2011	22003152	Grallert H	10/14/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/22003152	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 Other ancestry individuals	NA	6p12.3	6	46716485	PLA2G7	PLA2G7			7941			rs1805017-T	rs1805017	0	1805017	missense	0	0.26	2E-23	22.69897000433602	(Mass concentrations)	    .04	[0.035-0.051] unit increase	Affymetrix & Illumina [2,661,766] (imputed)	N
11/16/2011	22003152	Grallert H	10/14/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/22003152	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 Other ancestry individuals	NA	6p12.3	6	46707288	PLA2G7	PLA2G7			7941			rs7756935-A	rs7756935	0	7756935	intron	0	0.81	1E-10	10	(Activity concentrations)	    .03	[0.019-0.035] unit decrease	Affymetrix & Illumina [2,661,766] (imputed)	N
11/16/2011	22003152	Grallert H	10/14/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/22003152	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 Other ancestry individuals	NA	1p13.3	1	109274570	CELSR2	CELSR2			1952			rs7528419-A	rs7528419	0	7528419	UTR-3	0	0.79	1E-17	17	(Activity concentrations)	    .04	[0.027-0.043] unit increase	Affymetrix & Illumina [2,661,766] (imputed)	N
11/16/2011	22003152	Grallert H	10/14/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/22003152	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 Other ancestry individuals	NA	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.10	3E-11	10.52287874528034	(Activity concentrations)	    .05	[0.031-0.059] unit decrease	Affymetrix & Illumina [2,661,766] (imputed)	N
11/16/2011	22003152	Grallert H	10/14/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/22003152	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 Other ancestry individuals	NA	11q23.3	11	116778201	ZNF259	ZPR1			8882			rs964184-C	rs964184	0	964184	intron	0	0.86	8E-11	10.09691001300805	(Activity concentrations)	    .03	[0.022-0.042] unit decrease	Affymetrix & Illumina [2,661,766] (imputed)	N
11/16/2011	22003152	Grallert H	10/14/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/22003152	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 Other ancestry individuals	NA	16q13	16	56955678	CETP	HERPUD1 - CETP	9709	1071		       11.80	        6.25	rs247616-T	rs247616	0	247616	Intergenic	1	0.32	3E-8	7.522878745280337	(Mass concentrations)	    .02	[0.015-0.031] unit increase	Affymetrix & Illumina [2,661,766] (imputed)	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	7p14.3	7	33633653	Intergenic	RNA5SP229 - FLJ20712	100873487	55025		      455.82	       92.30	rs17170316-A	rs17170316	0	17170316	Intergenic	1	0.07	8E-7	6.096910013008056		    .33	[0.20-0.45] unit decrease	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	15q25.3	15	86510615	AGBL1	AGBL1			123624			rs2011905-C	rs2011905	0	2011905	intron	0	0.37	2E-6	5.698970004336018		    .22	[0.13-0.31] unit increase	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	20q12	20	40056900	Intergenic	HSPE1P1 - MAFB	140895	9935		      123.66	      628.95	rs2870137-A	rs2870137	0	2870137	Intergenic	1	0.12	3E-6	5.522878745280337		    .26	[0.15-0.36] unit decrease	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	1p13.3	1	110875293	CD53	CD53			963			rs2885805-A	rs2885805	0	2885805	intron	0	0.28	5E-6	5.301029995663981		    .21	[0.12-0.30] unit decrease	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	12p13.32	12	3640962	EFCAB4B	EFCAB4B			84766			rs4766152-G	rs4766152	0	4766152	intron	0	0.44	5E-6	5.301029995663981		    .22	[0.13-0.32] unit decrease	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	13q13.3	13	38796458	FREM2	FREM2			341640			rs9594293-A	rs9594293	0	9594293	intron	0	0.15	7E-6	5.154901959985742		    .23	[0.13-0.33] unit decrease	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	8p23.1	8	6493731	MCPH1	MCPH1			79648			rs17077154-G	rs17077154	0	17077154	intron	0	0.07	8E-6	5.096910013008055		    .30	[0.17-0.43] unit increase	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	6q16.1	6	98563625	Intergenic	EIF4EBP2P3 - POU3F2	100190924	5454		      383.79	      271.08	rs2086512-A	rs2086512	0	2086512	Intergenic	1	0.06	9E-6	5.045757490560675		    .32	[0.18-0.47] unit increase	Illumina [546,677]	N
11/18/2011	21993531	Kuparinen T	10/13/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21993531	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	14q32.11	14	90555841	TTC7B	TTC7B			145567			rs17793829-A	rs17793829	0	17793829	intron	0	0.26	9E-6	5.045757490560675		    .20	[0.11-0.29] unit increase	Illumina [546,677]	N
10/29/2011	21996601	Das K	10/11/2011	Hum Hered	http://www.ncbi.nlm.nih.gov/pubmed/21996601	Genome-wide association studies for bivariate sparse longitudinal data.	Blood pressure	500 European ancestry males, 477 European ancestry females	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	NR [~550,000]	N
11/04/2011	21990027	Drago A	10/11/2011	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21990027	The genetics of antipsychotic induced tremors: a genome-wide pathway analysis on the STEP-BD SCP sample.	Response to antipsychotic therapy (extrapyramidal side effects)	409 European or other ancestry bipolar cases 	NA	4p15.33	4	13912749	NR	LINC01182			101929071			rs10805321-?	rs10805321	0	10805321	intron	0	NR	9E-6	5.045757490560675		    .39	[NR] unit increase	Affymetrix [NR]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	2q33.1	2	201298088	CASP8	ALS2CR12			130540			rs13016963-A	rs13016963	0	13016963	intron	0	0.37	9E-10	9.045757490560675		   1.14	[1.09-1.19] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	11q22.3	11	108304735	ATM	ATM			472			rs1801516-?	rs1801516	0	1801516	missense	0	0.87	3E-9	8.522878745280337		   1.19	[1.12-1.27] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	21q22.3	21	41374154	MX2	MX2			4600			rs45430-?	rs45430	0	45430	intron	0	0.61	3E-9	8.522878745280337		   1.14	[1.09-1.18] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	5p15.33	5	1321972	TERT, CLPTM1L	CLPTM1L			81037			rs401681-A	rs401681	0	401681	intron	0	0.46	3E-8	7.522878745280337		   1.20	[1.12-1.28] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	5p13.2	5	33955221	SLC45A2	SLC45A2			51151			rs35390-?	rs35390	0	35390	intron	0	0.98	2E-7	6.698970004336019		   2.78	[1.89-4.35] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	9p21.3	9	21816529	CDKN2A, MTAP	MTAP			4507			rs7023329-?	rs7023329	0	7023329	intron	0	0.51	7E-9	8.154901959985743		   1.20	[1.14-1.28] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	11q14.3	11	89277878	TYR	TYR			7299			rs1393350-A	rs1393350	0	1393350	intron	0	0.28	2E-13	12.69897000433602		   1.30	[1.21-1.39] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	16q24.3	16	89689495	MC1R	CDK10			8558			rs258322-A	rs258322	0	258322	intron	0	0.11	3E-27	26.52287874528033		   1.70	[1.54-1.87] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	6q23.2	6	134577318	ASIP	LINC01010 - FAM8A6P	154092	114182		       73.30	       25.82	rs2284378-G	rs228437	0	228437	Intergenic	1	0.33	1E-7	7		   1.21	[1.13-1.29] 	Illumina [594,997]	N
12/10/2011	21983787	Barrett JH	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983787	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	22q13.1	22	38149612	PLA2G6	PLA2G6			8398			rs6001027-?	rs6001027	0	6001027	intron	0	0.65	2E-6	5.698970004336018		   1.18	[1.09-1.27] 	Illumina [594,997]	N
11/02/2011	21983785	Macgregor S	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983785	Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3.	Melanoma	2,168 European ancestry cases, 4,387 European ancestry controls	5,193 European ancestry cases, 15,144 European ancestry controls	1q21.3	1	150887995	ARNT, SETDB1, LASS2, ANXA9, MCL1, CTSK	LOC100996521			100996521			rs7412746-T	rs7412746	0	7412746	intron	0	0.55	9E-11	10.04575749056067		   1.15	[NR] 	Illumina [5,480,804] (imputed)	N
11/02/2011	21983785	Macgregor S	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983785	Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3.	Melanoma	2,168 European ancestry cases, 4,387 European ancestry controls	5,193 European ancestry cases, 15,144 European ancestry controls	1q42.12	1	226376990	PARP1	PARP1			142			rs3219090-C	rs3219090	0	3219090	intron	0	0.67	9E-8	7.045757490560674		   1.15	[NR] 	Illumina [5,480,804] (imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Gout	968 European ancestry cases, 40,000 European ancestry controls	NA	NR			ALDH16A1	 - 						c.1580C>G-G	c.1580C>G					0.019	2E-16			   3.12	[2.38-4.17] 	Illumina [15,957,390] (Imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Gout	968 European ancestry cases, 40,000 European ancestry controls	NA	4q22.1	4	88131171	ABCG2	ABCG2			9429			rs2231142-T	rs2231142	0	2231142	missense	0	0.101	3E-12	11.52287874528034		   1.67	[1.43-1.92] 	Illumina [15,957,390] (Imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Gout	968 European ancestry cases, 40,000 European ancestry controls	NA	4p16.1	4	9921380	SLC2A9	SLC2A9			56606			rs734553-T	rs734553	0	734553	intron	0	0.790	2E-7	6.698970004336019		   1.39	[1.23-1.59] 	Illumina [15,957,390] (Imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	NR			Intergenic	 - 						chr1_142697422-C	chr1_142697422					0.986	5E-16			    .48	[0.36-0.60] s.d. increase	Illumina [15,957,390] (Imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	NR			ALDH16A1	 - 						c.1580C>G-G	c.1580C>G					0.019	5E-21			    .36	[0.29-0.44] s.d. increase	Illumina [15,957,390] (Imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	4p16.1	4	9921380	SLC2A9	SLC2A9			56606			rs734553-T	rs734553	0	734553	intron	0	0.79	1E-80	80		    .24	[0.22-0.27] s.d. increase	Illumina [15,957,390] (Imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	4q22.1	4	88131171	ABCG2	ABCG2			9429			rs2231142-T	rs2231142	0	2231142	missense	0	0.101	2E-20	19.69897000433602		    .16	[0.12-0.19] s.d. increase	Illumina [15,957,390] (Imputed)	N
02/13/2014	21983786	Sulem P	10/09/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21983786	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	6p22.2	6	25812922	SLC17A cluster	SLC17A1			6568			rs1165196-A	rs1165196	0	1165196	missense	0	0.492	3E-6	5.522878745280337		    .05	[0.03-0.07] s.d. increase	Illumina [15,957,390] (Imputed)	N
12/10/2011	21981779	Denny JC	10/07/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21981779	Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.	Hypothyroidism	1,317 European ancestry cases, 5,053 European ancestry controls	263 European ancestry cases, 1,616 European ancestry controls	9q22.33	9	97786731	FOXE1	KRT18P13 - FOXE1	392371	2304		       85.93	       66.52	rs7850258-?	rs7850258	0	7850258	Intergenic	1	0.65	4E-9	8.397940008672036	(eMERGE)	   1.23	[1.04-1.47] 	Illumina [522,164]	N
11/04/2011	21979947	Li X	10/06/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21979947	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	2q21.3	2	135045855	RAB3GAP1	MAP3K19 - RAB3GAP1	80122	22930		       15.37	        6.41	rs4954218-?	rs4954218	0	4954218	Intergenic	1	NR	1E-9	8.999999999999998		   1.61	 	Illumina [~290,000]	N
11/04/2011	21979947	Li X	10/06/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21979947	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	19p12	19	22558873	Intergenic	LINC01233 - GOLGA2P9	100128139	440518		       21.83	       37.38	rs8111998-?	rs8111998	0	8111998	Intergenic	1	NR	8E-7	6.096910013008056		   1.71	 	Illumina [~290,000]	N
11/04/2011	21979947	Li X	10/06/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21979947	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	2q21.3	2	135749357	UBXD2	UBXN4			23190			rs6430585-?	rs6430585	0	6430585	intron	0	NR	1E-6	5.999999999999999		   1.39	 	Illumina [~290,000]	N
11/04/2011	21979947	Li X	10/06/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21979947	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	4q24	4	101116562	PPP3CA	PPP3CA			5530			rs2659546-?	rs2659546	0	2659546	intron	0	NR	4E-6	5.397940008672037		   1.63	 	Illumina [~290,000]	N
11/04/2011	21979947	Li X	10/06/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21979947	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	3p26.1	3	4972191	BHLHB2	BHLHE40-AS1 - BHLHE40	100507582	8553		       65.69	        7.22	rs6442925-?	rs6442925	0	6442925	Intergenic	1	NR	2E-6	5.698970004336018		   1.56	 	Illumina [~290,000]	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2q35	2	217258925	Intergenic	TNP1 - DIRC3	7141	729582		      398.87	       25.10	rs2553026-A	rs2553026	0	2553026	Intergenic	1	0.19	6E-8	7.221848749616355		    .06	[0.036-0.076] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2q35	2	217658439	Intergenic	DIRC3			729582			rs6435999-A	rs6435999	0	6435999	intron	0	0.64	7E-7	6.154901959985743		    .04	[0.025-0.057] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2q35	2	217865142	TNS1	TNS1			7145			rs3791950-A	rs3791950	0	3791950	intron	0	0.89	2E-6	5.698970004336018		    .06	[0.036-0.086] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2p16.1	2	55289187	CCDC88A	CCDC88A			55704			rs2589113-T	rs2589113	0	2589113	UTR-3	0	0.48	2E-8	7.698970004336018		    .04	[0.028-0.060] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2p13.3	2	69060811	ANTXR1	ANTXR1			84168			rs4315565-A	rs4315565	0	4315565	intron	0	0.20	1E-8	8		    .06	[0.039-0.079] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	22q12.3			SYN3	 - 						rs5749482-C	rs5749482					0.44	5E-7			    .04	[0.024-0.056] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	3q23	3	141375367	ZBTB38	ZBTB38			253461			rs6440003-A	rs6440003	0	6440003	intron	0	0.81	2E-10	9.698970004336017		    .07	[0.045-0.085] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	3p14.3	3	56701152	Intergenic	FAM208A - ARHGEF3	23272	50650		       17.91	       26.27	rs6773931-A	rs6773931	0	6773931	Intergenic	1	0.80	8E-8	7.096910013008055		    .05	[0.033-0.073] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	4p15.31	4	17991787	LCORL	LCORL			254251			rs724577-A	rs724577	0	724577	intron	0	0.31	1E-15	15		    .07	[0.051-0.083] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	4q21.21	4	81244636	Intergenic	PRKG2 - RASGEF1B	5593	153020		       29.52	      181.76	rs994014-T	rs994014	0	994014	Intergenic	1	0.29	8E-10	9.096910013008054		    .05	[0.036-0.072] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	5q23.3	5	128305169	FBN2	FBN2			2201			rs27855-A	rs27855	0	27855	intron	0	0.81	4E-6	5.397940008672037		    .05	[0.027-0.067] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	5p13.2	5	36473135	Intergenic	RANBP3L - RNA5SP181	202151	100873443		      171.23	       12.21	rs2937550-T	rs2937550	0	2937550	Intergenic	1	0.20	8E-6	5.096910013008055		    .05	[0.025-0.065] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6q22.32	6	126446454	Intergenic	CENPW			387103			rs1361108-T	rs1361108	0	1361108	intron	0	0.30	9E-6	5.045757490560675		    .04	[0.020-0.056] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p23	6	14173197	Intergenic	CD83 - LINC01108	9308	102216342		       36.28	      106.93	rs853356-A	rs853356	0	853356	Intergenic	1	0.29	3E-6	5.522878745280337		    .04	[0.022-0.058] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p21.31	6	34246545	HMGA1	HMGA1;C6orf1			3159;221491			rs1150781-C	rs1150781	0	1150781	intron;missense	0	0.42	2E-8	7.698970004336018		    .05	[0.030-0.066] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p21.31	6	35374073	PPARD	PPARD			5467			rs9470004-T	rs9470004	0	9470004	intron	0	0.17	1E-11	11		    .08	[0.057-0.105] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	6p25.1	6	5260703	LYRM4	FARS2;LYRM4			10667;57128			rs2224391-A	rs2224391	0	2224391	nearGene-5;missense	0	0.23	3E-6	5.522878745280337		    .05	[0.029-0.069] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	8q24.12	8	119635689	ENPP2	ENPP2			5168			rs7007970-C	rs7007970	0	7007970	intron	0	0.73	6E-6	5.221848749616356		    .04	[0.023-0.059] unit  decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	8q24.22	8	134626389	ZFAT1	ZFAT			57623			rs733254-A	rs733254	0	733254	intron	0	0.27	2E-6	5.698970004336018		    .04	[0.023-0.059] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	8q13.2	8	69500215	SULF1	SULF1			23213			rs6982250-T	rs6982250	0	6982250	intron	0	0.25	1E-6	5.999999999999999		    .05	[0.026-0.066] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	10q22.3	10	79379706	Intergenic	PPIF - ZCCHC24	10105	219654		       24.37	        2.62	rs941873-A	rs941873	0	941873	Intergenic	1	0.41	4E-7	6.397940008672037		    .04	[0.026-0.062] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	12q13.13	12	53522931	ATF7	ATF7			11016			rs12321906-T	rs12321906	0	12321906	intron	0	0.87	5E-6	5.301029995663981		    .05	[0.030-0.074] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	12q14.3	12	65833477	HMGA2	HMGA2			8091			rs7979673-T	rs7979673	0	7979673	intron	0	0.32	7E-10	9.154901959985741		    .06	[0.038-0.078] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	13q13.3	13	35902310	DCLK1	DCLK1			9201			rs6563210-A	rs6563210	0	6563210	intron	0	0.56	7E-7	6.154901959985743		    .04	[0.023-0.055] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	14q24.3	14	75663248	TTLL5	TTLL5			23093			rs724743-A	rs724743	0	724743	intron	0	0.94	1E-7	7		    .10	[0.064-0.138] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	15q26.1	15	88854874	ACAN	ACAN			176			rs2351491-T	rs2351491	0	2351491	cds-synon	0	0.25	2E-9	8.698970004336019		    .06	[0.037-0.077] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	15q26.1	15	89073850	Intergenic	LOC102724566			102724566			rs420017-T	rs420017	0	420017	intron	0	0.21	7E-6	5.154901959985742		    .04	[0.023-0.063] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	17q23.3	17	63685671	MAP3K3	MAP3K3;LOC101927898			4215;101927898			rs11658329-C	rs11658329	0	11658329	intron;intron	0	0.70	6E-10	9.221848749616356		    .05	[0.035-0.071] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	17q23.3	17	63899888	Intergenic	CSH1 - CSHL1	1442	1444		        3.23	        9.72	rs2854160-T	rs2854160	0	2854160	Intergenic	1	0.21	5E-8	7.30102999566398		    .05	[0.033-0.073] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	18q21.1	18	49061284	DYM	DYM			54808			rs1787200-A	rs1787200	0	1787200	intron	0	0.37	1E-10	10		    .05	[0.037-0.069] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	19p13.3	19	2275080	C19orf35	C19orf35			374872			rs2523178-A	rs2523178	0	2523178	UTR-3	0	0.67	8E-6	5.096910013008055		    .06	[0.031-0.079] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	Xp22.33	23	2967682	ARSE	ARSE			415			rs12393627-A	rs12393627	0	12393627	intron	0	0.63	6E-12	11.22184874961635		    .07	[0.052-0.092] unit decrease	Affymetrix & Illumina [3,310,998] (imputed)	N
11/08/2011	21998595	N'Diaye A	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998595	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	15q25.2	15	83854003	ADAMTSL3	ADAMTSL3			57188			rs1383484-T	rs1383484	0	1383484	intron	0	0.40	9E-7	6.045757490560675		    .04	[0.024-0.056] unit increase	Affymetrix & Illumina [3,310,998] (imputed)	N
11/15/2011	21998597	Ohlsson C	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998597	Genetic determinants of serum testosterone concentrations in men.	Testosterone levels	8,938 European ancestry males	5,491 European ancestry males	17p13.1	17	7618597	SHBG	SHBG			6462			rs12150660-T	rs12150660	0	12150660	intron	0	0.23	1E-41	41	(Testosterone)	  31.80	[27.29-36.31] ng/dl increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/15/2011	21998597	Ohlsson C	10/06/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21998597	Genetic determinants of serum testosterone concentrations in men.	Testosterone levels	8,938 European ancestry males	5,491 European ancestry males	17p13.1	17	7631360	SHBG	SHBG			6462			rs6258-T	rs6258	0	6258	missense	0	0.02	2E-22	21.69897000433602	(Testosterone)	  82.30	[65.64-98.96] ng/dl decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/04/2011	21977987	Trompet S	10/06/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21977987	Replication of LDL GWAs hits in PROSPER/PHASE as validation for future (pharmaco)genetic analyses.	LDL cholesterol	5,244 European ancestry individuals	10,754 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2.5 million] (imputed)	N
11/03/2011	21971053	Takeuchi F	10/05/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21971053	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	6p21.32	6	32701596	HLA, DRB-DQB	TRNAI25			100189401			rs11752643-T	rs11752643	0	11752643		0	0.06	5E-7	6.30102999566398		   1.26	[1.15-1.38] 	Illumina [451,382]	N
11/03/2011	21971053	Takeuchi F	10/05/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21971053	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	9p21.3	9	22115287	CDKN2A, CDKN2B	CDKN2B-AS1			100048912			rs944797-C	rs944797	0	944797	intron	0	0.46	6E-16	15.22184874961635		   1.25	[1.18-1.31] 	Illumina [451,382]	N
11/03/2011	21971053	Takeuchi F	10/05/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21971053	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-A	rs671	0	671	missense	0	0.23	2E-34	33.69897000433602		   1.43	[1.35-1.51] 	Illumina [451,382]	N
10/29/2011	21961650	Squassina A	10/03/2011	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/21961650	Evidence for association of an ACCN1 gene variant with response to lithium treatment in Sardinian patients with bipolar disorder.	Response to lithium treatment in bipolar disorder	26 European ancestry lithium treatment responders, 26 European ancestry lithium treatment non-responders	34 European ancestry lithium treatment responders, 118 European ancestry lithium treatment non-responders	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [645,148]	N
02/10/2014	21964575	Rafnar T	10/02/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21964575	Mutations in BRIP1 confer high risk of ovarian cancer.	Ovarian cancer	640 European ancestry cases, 41,607 European ancestry controls	NA	17q23.2	17	61803285	BRIP1	BRIP1			83990			rs34289250-C	rs34289250	0	34289250	intron	0	0.0089	6E-13	12.22184874961636		   7.95	[NR] 	Illumina [15,957,390] (Imputed)	N
11/04/2011	22004137	Liu L	10/01/2011	Viral Immunol	http://www.ncbi.nlm.nih.gov/pubmed/22004137	A genome-wide association study with DNA pooling identifies the variant rs11866328 in the GRIN2A gene that affects disease progression of chronic HBV infection.	Hepatitis B	1,944 Han Chinese ancestry progressed cases, 854 Han Chinese ancestry asymptomatic carriers 	NA	16p13.2	16	9768699	GRIN2A	GRIN2A			2903			rs11866328-G	rs11866328	0	11866328	intron	0	NR	2E-8	7.698970004336018		   1.68	[1.40-2.02] 	Affymetrix [NR] (pooled)	N
10/24/2011	21980348	Fox AA	09/30/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21980348	Genome-wide assessment for genetic variants associated with ventricular dysfunction after primary coronary artery bypass graft surgery.	Postoperative ventricular dysfunction 	76 European ancestry male cases, 1,123 European ancestry controls	188 European ancestry male cases, 1,200 European ancestry male controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [709,355]	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	13q22.2	13	75752146	LMO7	LMO7			4008			rs539514-?	rs539514	0	539514	intron	0	0.50	6E-11	10.22184874961635		   1.43	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	2p23.3	2	25078886	EFR3B, 3NCOA1, C2orf79, CENPO, ADCY3, DNAJC27, POMC, DNMT3A	EFR3B			22979			rs478222-?	rs478222	0	478222	intron	0	0.59	4E-9	8.397940008672036		   1.22	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	6q27	6	170063801	WDR27, C6orf120, PHF10, TCTE3, C6orf208, LOC154449, DLL1, FAM120B, PSMB1, TBP, PCD2	LINC00574 - RPL12P23	80069	100270925		      260.93	      135.99	rs924043-?	rs924043	0	924043	Intergenic	1	0.85	8E-9	8.096910013008056		   1.35	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	7p15.1	7	28189423	LOC100128081	JAZF1-AS1			100128081			rs550448-?	rs550448	0	550448	intron	0	0.86	5E-7	6.30102999566398		   1.32	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	8q24.12	8	118965098	TNFRSF11B	COLEC10			10584			rs12679857-?	rs12679857	0	12679857	intron	0	0.69	4E-7	6.397940008672037		   1.20	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	2p23.2	2	28423934	FOSL2	FOSL2 - SNRPGP7	2355	100874408		        6.62	       36.32	rs6547853-?	rs6547853	0	6547853	Intergenic	1	0.60	8E-7	6.096910013008056		   1.19	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	11q13.3	11	69781755	NR	FGF4 - FGF3	2249	2248		        6.35	       28.21	rs4084127-?	rs4084127	0	4084127	Intergenic	1	NR	3E-6	5.522878745280337		   1.11	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	10q24.2	10	98540425	NR	HPSE2			60495			rs10786436-T	rs10786436	0	10786436	intron	0	NR	8E-7	6.096910013008056		   1.10	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/26/2011	21980299	Bradfield JP	09/29/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21980299	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	14q11.2	14	23370824	NR	IL25			64806			rs10137082-?	rs10137082	0	10137082	nearGene-5	0	NR	6E-6	5.221848749616356		   1.10	[NR] 	Affymetrix & Illumina [~2.54 million] (imputed)	N
10/22/2011	21956439	Zuo L	09/28/2011	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21956439	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls, 681 African American cases, 508 African American controls	NA	3p25.1	3	15253857	SH3BP5	SH3BP5;SH3BP5-AS1			9467;100505696			rs1318937-?	rs1318937	0	1318937	nearGene-3;nearGene-5	0	NR	3E-6	5.522878745280337	(EA + AA)	NR	NR	Illumina [805,814]	N
10/22/2011	21956439	Zuo L	09/28/2011	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21956439	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls, 681 African American cases, 508 African American controls	NA	11q24.2	11	125308507	PKNOX2	PKNOX2			63876			rs10893366-?	rs10893366	0	10893366	intron	0	NR	8E-6	5.096910013008055	(EA + AA)	NR	NR	Illumina [805,814]	N
10/22/2011	21956439	Zuo L	09/28/2011	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21956439	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls, 681 African American cases, 508 African American controls	NA	2q22.1	2	138914385	NXPH2	AHCYP4 - MRPS18BP2	129560	359763		       11.64	      754.15	rs9636231-?	rs9636231	0	9636231	Intergenic	1	NR	8E-6	5.096910013008055	(EA + AA)	NR	NR	Illumina [805,814]	N
10/22/2011	21980494	Germain M	09/27/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21980494	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	1q24.2	1	169544768	F5, SLC19A2, NME7	F5			2153			rs1018827-A	rs1018827	0	1018827	intron	0	0.12	2E-26	25.69897000433602		   2.52	[NR] 	Illumina [481,002]	N
10/22/2011	21980494	Germain M	09/27/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21980494	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	4q31.3	4	154599778	FGG, FGA	FGA - FGG	2243	2266		        9.03	        4.36	rs7659024-A	rs7659024	0	7659024	Intergenic	1	0.25	2E-13	12.69897000433602		   1.53	[NR] 	Illumina [481,002]	N
10/22/2011	21980494	Germain M	09/27/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21980494	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	9q34.2	9	133273813	ABO	ABO			28			rs505922-C	rs505922	0	505922	intron	0	0.43	1E-34	34		   1.92	[NR] 	Illumina [481,002]	N
10/22/2011	21980494	Germain M	09/27/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21980494	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	4q35.2	4	186264231	F11	F11			2160			rs3756008-T	rs3756008	0	3756008	nearGene-5	0	0.44	6E-11	10.22184874961635		   1.40	[NR] 	Illumina [481,002]	N
11/16/2011	21991891	Tantisira KG	09/26/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21991891	Genomewide association between GLCCI1 and response to glucocorticoid therapy in asthma.	Asthma treatment response	1,169 European ancestry asthmatic children and parents	935 European ancestry asthmatic adults	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [534,290]	N
10/21/2011	21947420	Lei SF	09/25/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21947420	Genome-wide association study identifies HMGN3 locus for spine bone size variation in Chinese.	Spine bone size	1,627 Han Chinese ancestry individuals	1,728 European ancestry females	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [689,368]	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	1p36.13	1	16980180	MFAP2	MFAP2			4237			rs2284746-G	rs2284746	0	2284746	intron	0	0.52	8E-16	15.09691001300805	(FEV1/FVC)	    .04	[0.030-0.050] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	1q41	1	218686726	TGFB2	TGFB2 - LYPLAL1	7042	127018		      242.11	      487.12	rs993925-T	rs993925	0	993925	Intergenic	1	0.31	1E-8	8	(FEV1/FVC)	    .03	[0.022-0.046] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2p24.3	2	15786044	DDX1	DDX1 - RNU5E-7P	1653	100873836		      154.93	       78.89	rs2544527-T	rs2544527	0	2544527	Intergenic	1	NR	9E-6	5.045757490560675	(FEV1/FVC)	    .03	[0.014-0.038] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	3p24.2	3	25479091	RARB	RARB			5915			rs1529672-C	rs1529672	0	1529672	intron	0	0.83	4E-14	13.39794000867204	(FEV1/FVC)	    .05	[0.036-0.060] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	10p13	10	12235993	CDC123	CDC123			8872			rs7068966-T	rs7068966	0	7068966	intron	0	0.52	6E-13	12.22184874961636	(FEV1/FVC)	    .03	[0.023-0.043] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2q37.3	2	238955452	HDAC4	FLJ43879 - HDAC4	401039	9759		       29.18	       92.72	rs12477314-T	rs12477314	0	12477314	Intergenic	1	0.20	2E-12	11.69897000433602	(FEV1/FVC)	    .04	[0.029-0.053] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	16q23.1	16	75356418	CFDP1	CFDP1			10428			rs2865531-T	rs2865531	0	2865531	intron	0	0.42	2E-11	10.69897000433602	(FEV1/FVC)	    .03	[0.021-0.041] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	12q23.1	12	95877650	CCDC38	CCDC38			120935			rs1036429-T	rs1036429	0	1036429	intron	0	0.20	2E-11	10.69897000433602	(FEV1/FVC)	    .04	[0.026-0.050] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	6	31600692	NCR3	TRNAI25			100189401			rs2857595-G	rs2857595	0	2857595		0	0.81	2E-10	9.698970004336017	(FEV1/FVC)	    .04	[0.025-0.049] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6q21	6	108946847	ARMC2	ARMC2			84071			rs2798641-T	rs2798641	0	2798641	intron	0	0.18	8E-9	8.096910013008056	(FEV1/FVC)	    .04	[0.027-0.055] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	12q13.3	12	57133500	LRP1	LRP1			4035			rs11172113-T	rs11172113	0	11172113	intron	0	0.61	1E-8	8	(FEV1/FVC)	    .03	[0.020-0.044] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	5q15	5	95700996	SPATA9	SPATA9 - RHOBTB3	83890	22836		       17.82	       30.15	rs153916-T	rs153916	0	153916	Intergenic	1	0.55	2E-8	7.698970004336018	(FEV1/FVC)	    .03	[0.021-0.041] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	21q22.11	21	34279939	KCNE2	LINC00310 - KCNE2	114036	9992		       90.02	       84.09	rs9978142-T	rs9978142	0	9978142	Intergenic	1	0.16	3E-8	7.522878745280337	(FEV1/FVC)	    .04	[0.027-0.059] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	16q21	16	58041378	MMP15	MMP15			4324			rs12447804-T	rs12447804	0	12447804	intron	0	0.21	4E-8	7.397940008672037	(FEV1/FVC)	    .04	[0.024-0.052] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.3	6	22017509	AK026189	CASC15			401237			rs1928168-T	rs1928168	0	1928168	intron	0	NR	2E-7	6.698970004336019	(FEV1/FVC)	    .03	[0.018-0.038] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	5q11.2	5	52899203	ITGA1	ITGA1			3672			rs1551943-G	rs1551943	0	1551943	intron	0	NR	2E-6	5.698970004336018	(FEV1/FVC)	    .03	[0.014-0.038] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.32	6	32700133	HLA-DQB1	TRNAI25			100189401			rs2647044-G	rs2647044	0	2647044		0	NR	6E-6	5.221848749616356	(FEV1/FVC)	    .04	[0.024-0.064] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/16/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	12p12.3	12	19713195	AEBP2	RPL34P25 - TCP1P3	100271501	400013		      203.95	      228.00	rs4762767-G	rs4762767	0	4762767	Intergenic	1	NR	8E-6	5.096910013008055	(FEV1/FVC)	    .03	[0.015-0.039] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	10p13	10	12235993	CDC123	CDC123			8872			rs7068966-T	rs7068966	0	7068966	intron	0	0.52	3E-12	11.52287874528034	(FEV1)	    .03	[0.021-0.037] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	10q22.3	10	76555466	C10orf11	C10orf11			83938			rs11001819-G	rs11001819	0	11001819	intron	0	0.52	3E-12	11.52287874528034	(FEV1)	    .03	[0.021-0.037] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	6	28354519	ZKSCAN3, ZNF323	ZKSCAN3			80317			rs6903823-G	rs6903823	0	6903823	intron	0	0.21	2E-10	9.698970004336017	(FEV1)	    .04	[0.025-0.049] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	3q26.2	3	169582431	MECOM	MECOM			2122			rs1344555-T	rs1344555	0	1344555	intron	0	0.21	3E-8	7.522878745280337	(FEV1)	    .03	[0.022-0.046] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2q37.3	2	238440721	ASB1	ASB1			51665			rs3769124-G	rs3769124	0	3769124	intron	0	NR	7E-8	7.154901959985742	(FEV1)	    .05	[0.029-0.065] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2q37.3	2	238955452	HDAC4	FLJ43879 - HDAC4	401039	9759		       29.18	       92.72	rs12477314-T	rs12477314	0	12477314	Intergenic	1	0.20	1E-7	7	(FEV1)	    .03	[0.018-0.038] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p22.1	6	29387425	OR12D2	TRNAI25			100189401			rs3094548-G	rs3094548	0	3094548		0	NR	1E-7	7	(FEV1)	    .03	[0.019-0.039] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6p21.33	6	31504943	MICB	MICB			4277			rs2855812-T	rs2855812	0	2855812	intron	0	NR	2E-7	6.698970004336019	(FEV1)	    .03	[0.018-0.042] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	16q23.1	16	78154841	WWOX	WWOX			51741			rs12716852-G	rs12716852	0	12716852	intron	0	NR	2E-7	6.698970004336019	(FEV1)	    .03	[0.015-0.035] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	15q25.1	15	78606381	CHRNA3	CHRNA3			1136			rs12914385-T	rs12914385	0	12914385	intron	0	NR	5E-7	6.30102999566398	(FEV1)	    .03	[0.015-0.035] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	4q24	4	105127203	TET2	RPL6P14 - TET2	391679	54790		      240.25	       18.67	rs1541374-T	rs1541374	0	1541374	Intergenic	1	NR	6E-7	6.221848749616355	(FEV1)	    .03	[0.016-0.036] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	15q25.1	15	78559273	CHRNA5	PSMA4 - CHRNA5	5685	1138		       10.05	        6.25	rs2036527-G	rs2036527	0	2036527	Intergenic	1	NR	7E-7	6.154901959985743	(FEV1)	    .03	[0.016-0.036] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	3p22.3	3	32887623	TRIM71	TRIM71			131405			rs9310995-T	rs9310995	0	9310995	intron	0	NR	4E-6	5.397940008672037	(FEV1)	    .02	[0.013-0.033] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6q25.1	6	150249731	PPP1R14C	PPP1R14C			81706			rs3734729-G	rs3734729	0	3734729	UTR-3	0	NR	4E-6	5.397940008672037	(FEV1)	    .06	[0.031-0.079] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/18/2011	21946350	Soler Artigas M	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946350	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	6q21	6	108946847	ARMC2	ARMC2			84071			rs2798641-T	rs2798641	0	2798641	intron	0	0.18	5E-6	5.301029995663981	(FEV1)	    .03	[0.018-0.042] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2014	21946351	Stacey SN	09/25/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21946351	A germline variant in the TP53 polyadenylation signal confers cancer susceptibility.	Basal cell carcinoma 	2,121 European ancestry cases, 39,614 European ancestry controls	2,506 European and Other ancestry cases, 15,101 European and Other ancestry controls	17p13.1	17	7668434	TP53	TP53			7157			rs78378222-C	rs78378222	0	78378222	UTR-3	0	NR	2E-20	19.69897000433602		   2.16	[1.83-2.54] 	Illumina [~16 million] (Imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	1p13.3	1	109275216	CELSR2	CELSR2			1952			rs660240-T	rs660240	0	660240	UTR-3	0	0.22	2E-22	21.69897000433602	(LDL)	    .17	[0.14-0.20] mmol/l decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	2p24.1	2	21021128	APOB	APOB			338			rs10199768-T	rs10199768	0	10199768	intron	0	0.47	8E-15	14.09691001300805	(LDL)	    .11	[0.083-0.137] mmol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	3q26.1	3	165773492	BCHE	BCHE			590			rs1803274-T	rs1803274	0	1803274	missense	0	0.21	6E-92	91.22184874961634	(BCHE)	    .37	[0.33-0.40] units/l decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	4p16.1	4	10054752	WDR1	RNA5SP154 - WDR1	100873420	9948		      261.89	       19.59	rs7671266-T	rs7671266	0	7671266	Intergenic	1	0.21	9E-71	70.04575749056067	(UA)	    .31	[0.27-0.34] umol/l decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	4p16.1	4	10329670	Intergenic	RAF1P1 - ZNF518B	348910	85460		       73.01	      110.20	rs4698036-G	rs4698036	0	4698036	Intergenic	1	0.22	2E-52	51.69897000433601	(UA)	    .26	[0.22-0.29] umol/l decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	8p21.3	8	19992246	LPL	LPL - RPL30P9	4023	100270981		       24.99	      121.09	rs17091905-A	rs17091905	0	17091905	Intergenic	1	0.124	6E-12	11.22184874961635	(HDL)	    .15	[0.11-0.19] mmol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	8p21.3	8	19992246	LPL	LPL - RPL30P9	4023	100270981		       24.99	      121.09	rs17091905-A	rs17091905	0	17091905	Intergenic	1	0.12	5E-15	14.30102999566398	(TRIG)	    .17	[0.13-0.22] mmol/l decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	10p12.33			MRC1	 - 						rs2437258-T	rs2437258					0.23	3E-10		(AST)	    .10	[0.071-0.133] units/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	12q24.31	12	121033534	OASL	OASL			8638			rs3213545-A	rs3213545	0	3213545	cds-synon	0	0.30	4E-15	14.39794000867204	(GGT)	    .12	[0.092-0.150] units/l decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	15q21.3	15	58386313	LIPC	LOC102724766			102724766			rs10468017-T	rs10468017	0	10468017	intron	0	0.33	3E-12	11.52287874528034	(HDL)	    .10	[0.075-0.133] mmol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	16q13	16	56954132	CETP	HERPUD1 - CETP	9709	1071		       10.25	        7.79	rs173539-T	rs173539	0	173539	Intergenic	1	0.32	3E-65	64.52287874528034	(HDL)	    .26	[0.23-0.28] mmol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	19q13.32	19	44892362	TOMM40	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	0.15	2E-14	13.69897000433602	(LDL)	    .15	[0.11-0.19] mmol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	19q13.32	19	44892362	TOMM40	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	0.15	4E-8	7.397940008672037	(CRP)	    .12	[0.075-0.157] unit decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.40	2E-8	7.698970004336018	(TRIG)	    .08	[0.053-0.111] mmol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	1q23.3			ABCG2	 - 						rs2199936-A	rs2199936					0.12	2E-17		(UA)	    .19	[0.14-0.23] umol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	6p22.2	6	25776721	SLC17A4	SLC17A4			10050			rs11754288-A	rs11754288	0	11754288	missense	0	0.43	4E-9	8.397940008672036	(UA)	    .08	[0.057-0.111] umol/l decrease	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.08	5E-12	11.30102999566398	(FERR)	    .18	[0.13-0.23] mg/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	11q23.3	11	117204850	PCSK7	TAGLN;PCSK7			6876;9159			rs508487-T	rs508487	0	508487	nearGene-3;intron	0	0.04	2E-10	9.698970004336017	(TRIG)	    .24	[0.16-0.31] mmol/l increase	Illumina [NR] (imputed)	N
10/20/2011	21943158	Middelberg RP	09/24/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21943158	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.11	5E-11	10.30102999566398	(LDL)	    .15	[0.10-0.19] mmol/l decrease	Illumina [NR] (imputed)	N
10/07/2011	21926416	Amos CI	09/22/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926416	Genome-wide association study identifies novel loci predisposing to cutaneous melanoma.	Melanoma	1,804 European ancestry cases, 1,026 European ancestry controls	6,483 European and Middle East/North African ancestry cases, 23,324 European and Middle East/North African ancestry controls	1q21.3	1	150989393	ANXA9	ANXA9			8416			rs1722784-?	rs1722784	0	1722784	intron	0	NR	2E-6	5.698970004336018		   1.12	[NR] 	Illumina [818,977]	N
10/16/2011	21940970	Meschia JF	09/22/2011	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/21940970	Siblings with ischemic stroke study: results of a genome-wide scan for stroke loci.	Stroke	223 cases, 248 stroke-affected siblings, 84 stroke-unaffected siblings	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR]	N
10/16/2011	21957438	Meschia JF	09/21/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21957438	Genomic risk profiling of ischemic stroke: results of an international genome-wide association meta-analysis.	Stroke	1,470 European ancestry cases, 1,932 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [5,156,597] (imputed)	N
10/16/2011	21940522	Shaffer JR	09/21/2011	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/21940522	Genome-wide association scan for childhood caries implicates novel genes.	Dental caries	1,305 European ancestry children	1,695 European ancestry children	11p14.1	11	30445953	MPPED2	MPPED2			744			rs11031093-?	rs11031093	0	11031093	intron	0	NR	8E-6	5.096910013008055		   1.36	[-0.73720-3.45720] 	Illumina [1,450,678] (imputed)	N
10/16/2011	21940522	Shaffer JR	09/21/2011	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/21940522	Genome-wide association scan for childhood caries implicates novel genes.	Dental caries	1,305 European ancestry children	1,695 European ancestry children	17q22	17	58506844	Intergenic	MTMR4			9110			rs2302189-?	rs2302189	0	2302189	missense	0	NR	8E-6	5.096910013008055		   1.33	[-0.76720-3.42720] 	Illumina [1,450,678] (imputed)	N
10/16/2011	21940522	Shaffer JR	09/21/2011	J Dent Res	http://www.ncbi.nlm.nih.gov/pubmed/21940522	Genome-wide association scan for childhood caries implicates novel genes.	Dental caries	1,305 European ancestry children	1,695 European ancestry children	11p14.1	11	30486561	Intergenic	MPPED2			744			rs545610-?	rs545610	0	545610	intron	0	NR	9E-6	5.045757490560675		   1.34	[-0.75720-3.43720] 	Illumina [1,450,678] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	10q21.2	10	60586880	NR	ANK3			288			rs16915157-?	rs16915157	0	16915157	intron	0	NR	5E-6	5.301029995663981		   1.10	[1.06-1.14] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	10q24.32	10	103016151	CNNM2	CNNM2			54805			rs7914558-G	rs7914558	0	7914558	intron	0	0.59	2E-8	7.698970004336018		   1.22	[1.15-1.29] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	10q24.33	10	103146454	NT5C2	NT5C2			22978			rs11191580-T	rs11191580	0	11191580	intron	0	0.91	3E-8	7.522878745280337		   1.20	[1.13-1.26] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	11p15.1	11	17138601	NR	PIK3C2A			5286			rs4356203-?	rs4356203	0	4356203	intron	0	NR	1E-7	7		   1.09	[1.06-1.12] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	11q24.2	11	125591814	STT3A	STT3A			3703			rs548181-G	rs548181	0	548181	nearGene-5	0	0.88	1E-6	5.999999999999999		   1.10	[1.06-1.14] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	11q25	11	130960853	NR	SNX19 - NTM	399979	50863		       44.37	      409.62	rs10894294-?	rs10894294	0	10894294	Intergenic	1	NR	3E-6	5.522878745280337		   1.08	[1.05-1.12] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	12p13.33	12	2240418	CACNA1C	CACNA1C			775			rs4765905-?	rs4765905	0	4765905	intron	0	NR	2E-6	5.698970004336018		   1.08	[1.05-1.11] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	15q15.1	15	40303426	NR	PLCB2			5330			rs1869901-?	rs1869901	0	1869901	intron	0	NR	3E-6	5.522878745280337		   1.07	[1.04-1.09] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	15q22.2	15	61547904	NR	RNA5SP397 - VPS13C	100873650	54832		      811.02	      304.49	rs4775413-?	rs4775413	0	4775413	Intergenic	1	NR	2E-6	5.698970004336018		   1.08	[1.04-1.11] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	18q21.2	18	55084786	CCDC68	MAP1LC3P - RNA5SP459	387615	100873703		      129.75	       61.76	rs12966547-G	rs12966547	0	12966547	Intergenic	1	0.58	3E-8	7.522878745280337		   1.40	[1.28-1.52] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	18q21.2	18	55527730	TCF4	TCF4			6925			rs17512836-C	rs17512836	0	17512836	intron	0	0.02	1E-6	5.999999999999999		   1.23	[1.14-1.31] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1p21.3	1	98037378	MIR137	MIR137HG			400765			rs1625579-T	rs1625579	0	1625579	intron	0	0.80	2E-11	10.69897000433602		   1.12	[1.09-1.16] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1p35.2	1	29958713	NR	PTPRU - MATN1	10076	4146		      631.90	      752.56	rs1009080-?	rs1009080	0	1009080	Intergenic	1	NR	3E-6	5.522878745280337		   1.09	[1.05-1.13] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1p36.23	1	8362616	NR	RERE			473			rs2252865-?	rs2252865	0	2252865	intron	0	NR	3E-6	5.522878745280337		   1.08	[1.04-1.11] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1q43	1	243445665	NR	SDCCAG8			10806			rs6703335-?	rs6703335	0	6703335	intron	0	NR	5E-8	7.30102999566398		   1.09	[1.06-1.13] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	2q32.3	2	193119895	PCGEM1	RPS17P8 - GLULP6	100271070	343981		      345.47	     1009.40	rs17662626-A	rs17662626	0	17662626	Intergenic	1	0.91	5E-8	7.30102999566398		   1.20	[1.13-1.26] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	2q37.2	2	235886699	NR	AGAP1			116987			rs13025591-?	rs13025591	0	13025591	intron	0	NR	6E-6	5.221848749616356		   1.07	[1.04-1.11] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3p14.2	3	62079095	NR	PTPRG			5793			rs11130874-?	rs11130874	0	11130874	intron	0	NR	2E-6	5.698970004336018		   1.10	[1.06-1.14] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3p21.1	3	52821213	ITIH3, ITIH4	ITIH4			3700			rs2239547-?	rs2239547	0	2239547	intron	0	NR	6E-8	7.221848749616355		   1.10	[1.06-1.14] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3p22.2	3	36821489	NR	HSPD1P6 - TRANK1	645548	9881		       52.60	        5.33	rs4624519-?	rs4624519	0	4624519	Intergenic	1	NR	2E-7	6.698970004336019		   1.09	[1.05-1.12] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3q26.33	3	180833426	NR	LOC101928882			101928882			rs1879248-?	rs1879248	0	1879248	intron	0	NR	7E-6	5.154901959985742		   1.07	[1.04-1.11] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	6p22.1	6	30206354	TRIM26	TRIM26			7726			rs2021722-C	rs2021722	0	2021722	intron	0	0.78	2E-12	11.69897000433602		   1.15	[1.11-1.19] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	7q11.22	7	72286331	NR	CALN1			83698			rs12699131-?	rs12699131	0	12699131	intron	0	NR	2E-6	5.698970004336018		   1.08	[1.04-1.11] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	8p23.2	8	4323322	CSMD1	CSMD1			64478			rs10503253-A	rs10503253	0	10503253	intron	0	0.19	2E-8	7.698970004336018		   1.16	[1.11-1.21] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/17/2011	21926974	Ripke S	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926974	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	8q21.3	8	88748082	MMP16	RNA5SP272 - RIPK2	100873525	8767		      351.54	     1009.65	rs7004633-A	rs7004633	0	7004633	Intergenic	1	0.18	2E-7	6.698970004336019		   1.11	[1.07-1.15] 	Affymetrix & Illumina [1,252,901] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	12p13.33	12	2310730	CANCNA1C	CACNA1C			775			rs4765913-A	rs4765913	0	4765913	intron	0	NR	2E-8	7.698970004336018		   1.14	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	11q13.2	11	66783531	ZDHHC24, YIF1A, TMEM151A, SYT12, SPTBN2,SLC29A2, SF3B2, RIN1, RCE1, RBM4B, RBM4, RBM14, RAB1B, PELI3, PC, PACS1, NPAS4, MRPL11, LRFN4, KLC2, GAL3ST3, DPP3, CTSF, CNIH2, CD248, CCS, CCDC87, C11orf86, C11orf80, BRMS1, BBS1, B3GNT1, ACTN3	C11orf80			79703			rs10896135-G	rs10896135	0	10896135	intron	0	NR	2E-7	6.698970004336019		   1.12	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	12q13.12	12	48824388	RND1, DDX23, CANCNB3	CACNB3			784			rs2070615-G	rs2070615	0	2070615	intron	0	NR	1E-6	5.999999999999999		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	11q14.1	11	79366149	ODZ4	TENM4			26011			rs12576775-G	rs12576775	0	12576775	intron	0	NR	4E-8	7.397940008672037		   1.14	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	2p14	2	65531391	Intergenic	RPS15AP15 - KRT18P33	100130782	647162		       19.25	      135.04	rs3845817-T	rs3845817	0	3845817	Intergenic	1	NR	2E-6	5.698970004336018		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	2q32.3	2	194007459	Intergenic	RPS17P8 - GLULP6	100271070	343981		     1233.04	      121.84	rs2176528-C	rs2176528	0	2176528	Intergenic	1	NR	4E-6	5.397940008672037		   1.12	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	1p34.2	1	41374150	Intergenic	FOXO6			100132074			rs4660531-T	rs4660531	0	4660531	intron	0	NR	3E-6	5.522878745280337		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	2q11.2	2	98766429	TXNDC9, TSGA10, REV1, MRPL30, MITD1, MGAT4A, LYG1, LYG2, LIPT1, EIF5B, C2orf55, C2orf15	YWHAQP5 - KIAA1211L	100130391	343990		       70.94	       27.42	rs7578035-G	rs7578035	0	7578035	Intergenic	1	NR	3E-6	5.522878745280337		   1.09	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	19q13.33	19	48725015	SPHK2, SEC1, RPL18, RASIP1, NTN5, MAMSTR, IZUMO1, FUT2, FUT1, FGF21, FAM83E, DBP, CA11	RASIP1			54922			rs2287921-C	rs2287921	0	2287921	intron	0	NR	3E-6	5.522878745280337		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	8q24.3	8	141290216	LOC731779, GPR20	SLC45A4			57210			rs7827290-G	rs7827290	0	7827290	intron	0	NR	9E-6	5.045757490560675		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	1p31.1	1	78789077	Intergenic	RPL23P3 - ELTD1	100130630	64123		      122.38	      100.69	rs12730292-C	rs12730292	0	12730292	Intergenic	1	NR	5E-6	5.301029995663981		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	2q11.2	2	96745212	LMAN2L, FER1L5, CNNM4	LMAN2L - CNNM4	81562	26504		        5.14	       15.69	rs6746896-A	rs6746896	0	6746896	Intergenic	1	NR	2E-6	5.698970004336018		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	3p21.1	3	52801338	WDR82, TWF2, TNNC1, TMEM110, TLR9, STAB1,SPCS1, SNORD69, SNORD19, SNORD19B, SFMBT1, SEMA3G, RFT1, PRKCD, PPM1M, PHF7, PBRM1, NT5DC2, NISCH, NEK4, MUSTN1, LOC440957, ITIH1, ITIH3, ITIH4, GNL3, GLYCTK, GLT8D1, DNAH1, BAP1, ALAS1	ITIH3			3699			rs736408-C	rs736408	0	736408	intron	0	NR	2E-6	5.698970004336018		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	6q25.2	6	152469438	SYNE1	SYNE1			23345			rs9371601-T	rs9371601	0	9371601	intron	0	NR	7E-7	6.154901959985743		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	10q21.2	10	60519366	ANK3	ANK3			288			rs10994397-T	rs10994397	0	10994397	intron	0	NR	3E-7	6.522878745280337		   1.22	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	15q14	15	38694167	C15orf53	RASGRP1 - C15orf53	10125	400359		      129.36	        2.43	rs12912251-G	rs12912251	0	12912251	Intergenic	1	NR	3E-6	5.522878745280337		   1.10	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	7p22.3	7	1911173	MAD1L1	MAD1L1			8379			rs4332037-T	rs4332037	0	4332037	intron	0	NR	7E-6	5.154901959985742		   1.11	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/19/2011	21926972	Sklar P	09/18/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21926972	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	3p22.2	3	36822998	LBA1	HSPD1P6 - TRANK1	645548	9881		       54.11	        3.82	rs6550435-G	rs6550435	0	6550435	Intergenic	1	NR	9E-6	5.045757490560675		   1.09	[NR] 	Affymetrix & Illumina [2,415,422] (imputed)	N
10/06/2011	21935397	Paternoster L	09/15/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21935397	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adults, 2,740 European ancestry controls	29,181 European ancestry individuals	6p12.3	6	50868566	TFAP2B	TRNAI25			100189401			rs734597-A	rs734597	0	734597		0	NR	3E-8	7.522878745280337		NR	NR	Illumina [545,349]	N
10/06/2011	21935397	Paternoster L	09/15/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21935397	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adults, 2,740 European ancestry controls	29,181 European ancestry individuals	1q32.2	1	209553912	CAMK1G	MIR205 - CAMK1G	406988	57172		      121.67	       29.79	rs12130212-T	rs12130212	0	12130212	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [545,349]	N
10/06/2011	21935397	Paternoster L	09/15/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21935397	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adults, 2,740 European ancestry controls	29,181 European ancestry individuals	14q24.2	14	72225785	RGS6	RGS6			9628			rs699363-G	rs699363	0	699363	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [545,349]	N
10/06/2011	21935397	Paternoster L	09/15/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21935397	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adults, 2,740 European ancestry controls	29,181 European ancestry individuals	15q26.3	15	98332800	FLJ39743	ARRDC4 - FAM169B	91947	283777		      358.96	      104.36	rs970843-C	rs970843	0	970843	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [545,349]	N
10/07/2011	21912425	Tohkin M	09/13/2011	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/21912425	A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	14 Japanese ancestry cases, 991 Japanese ancestry controls	NA	6p21.33	6	31537703	BAT1, HCP5, MICC, PPIAP9, PSORS1C1, POLR2LP, CCHCR1, TCF19, POU5F1, HLA-C, HCP5, PSORS1C3, HLA-B*5801	DDX39B;SNORD117;ATP6V1G2-DDX39B			7919;692233;100532737			rs2734583-?	rs2734583	0	2734583	intron;nearGene-5;intron	0	0.0055	2E-8	7.698970004336018		  66.80	[19.8-225.0] 	Illumina [890,321]	N
10/05/2011	21909106	Arakawa S	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909106	Genome-wide association study identifies two susceptibility loci for exudative age-related macular degeneration in the Japanese population.	Age-related macular degeneration	827 Japanese ancestry cases, 3,323 Japanese ancestry controls	709 Japanese ancestry cases, 15,571 Japanese ancestry controls	8p21.3	8	23225458	TNFRSF10A, LOC389641	TNFRSF10A;LOC389641			8797;389641			rs13278062-T	rs13278062	0	13278062	nearGene-5;ncRNA	0	0.35	1E-12	12		   1.37	[1.25-1.49] 	Illumina [457,489]	N
10/05/2011	21909106	Arakawa S	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909106	Genome-wide association study identifies two susceptibility loci for exudative age-related macular degeneration in the Japanese population.	Age-related macular degeneration	827 Japanese ancestry cases, 3,323 Japanese ancestry controls	709 Japanese ancestry cases, 15,571 Japanese ancestry controls	4q12	4	56920284	REST, C4orf14, POLR2B, IGFBP7	REST			5978			rs1713985-G	rs1713985	0	1713985	intron	0	0.29	2E-8	7.698970004336018		   1.30	[1.19-1.42] 	Illumina [457,489]	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	8q24.13	8	122395852	ZHX2	MRPS36P3 - CDK5PS	347704	392265		      304.25	      373.38	rs11781551-A	rs11781551	0	11781551	Intergenic	1	0.48	2E-11	10.69897000433602	(cIMT)	    .01	[0.01-0.01] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	19q13.32	19	44912383	APOC1	APOC1			341			rs445925-A	rs445925	0	445925	nearGene-5	0	0.11	2E-8	7.698970004336018	(cIMT)	    .02	[0.01-0.03] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	8p23.1	8	10813762	PINX1	PINX1			54984			rs6601530-G	rs6601530	0	6601530	intron	0	0.45	2E-8	7.698970004336018	(cIMT)	    .01	[0.01-0.01] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	6p22.2	6	25771819	SLC17A4	SLC17A4			10050			rs4712972-A	rs4712972	0	4712972	intron	0	NR	8E-8	7.096910013008055	(cIMT)	    .01	[0.01-0.01] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	7q22.3	7	106769006	PIK3CG	CCDC71L - RNA5SP236	168455	100873494		      107.82	       12.59	rs17398575-A	rs17398575	0	17398575	Intergenic	1	0.25	2E-12	11.69897000433602	(Plaque)	    .16	[0.11-0.21] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	4q31.22	4	147472512	EDNRA	PRMT5P1 - EDNRA	100420927	1909		       13.19	        8.41	rs1878406-T	rs1878406	0	1878406	Intergenic	1	0.13	7E-12	11.15490195998574	(Plaque)	    .20	[0.14-0.26] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	NR	1E-7	7	(Plaque)	    .18	[0.11-0.25] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	3p14.1	3	66717940	LRIG1	RPL21P41 - KBTBD8	100271159	84541		       80.40	      280.36	rs17045031-A	rs17045031	0	17045031	Intergenic	1	NR	4E-7	6.397940008672037	(Plaque)	    .30	[0.18-0.42] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	19q13.32	19	44912383	APOC1	APOC1			341			rs445925-G	rs445925	0	445925	nearGene-5	0	0.89	4E-6	5.397940008672037	(plaque)	   1.22	[1.12-1.32] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	7q22.3	7	106769006	PIK3CG	CCDC71L - RNA5SP236	168455	100873494		      107.82	       12.59	rs17398575-A	rs17398575	0	17398575	Intergenic	1	0.25	3E-6	5.522878745280337	(cIMT)	    .01	[0.01-0.01] per unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2011	21909108	Bis JC	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909108	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	11,273 European ancestry individuals	4q31.22	4	147472512	EDNRA	PRMT5P1 - EDNRA	100420927	1909		       13.19	        8.41	rs1878406-T	rs1878406	0	1878406	Intergenic	1	0.13	7E-7	6.154901959985743	(cIMT)	    .01	[0.01-0.01] per unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q24.1	15	74785026	CYP1A1, ULK3	CSK			1445			rs1378942-C	rs1378942	0	1378942	intron	0	0.35	3E-26	25.52287874528034		    .42	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.47	4E-25	24.39794000867203		    .45	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q21.21	4	80243569	FGF5	PRDM8 - FGF5	56978	2250		       39.24	       23.02	rs1458038-T	rs1458038	0	1458038	Intergenic	1	0.29	9E-25	24.04575749056067		    .46	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20q13.32	20	59176062	GNAS, EDN3	ZNF831			128611			rs6015450-G	rs6015450	0	6015450	intron	0	0.12	6E-23	22.22184874961636		    .56	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q24	4	102267552	SLC39A8	SLC39A8			64116			rs13107325-T	rs13107325	0	13107325	missense	0	0.05	2E-17	16.69897000433602		    .68	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20p12.2	20	10988382	JAG1	FAT1P1 - RPS11P1	170513	128718		       99.29	      357.00	rs1327235-G	rs1327235	0	1327235	Intergenic	1	0.46	1E-15	15		    .30	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p22.2	6	26090951	HFE	HFE			3077			rs1799945-G	rs1799945	0	1799945	missense	0	0.14	2E-15	14.69897000433602		    .46	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q26.1	15	90894158	FURIN, FES	FES			2242			rs2521501-T	rs2521501	0	2521501	intron	0	0.31	2E-15	14.69897000433602		    .36	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11q22.1	11	100722807	FLJ32810, TMEM133	ARHGAP42			143872			rs633185-G	rs633185	0	633185	intron	0	0.28	2E-15	14.69897000433602		    .33	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5q33.3	5	158418394	EBF1	MARK2P11 - EBF1	100421484	1879		      428.41	      277.51	rs11953630-T	rs11953630	0	11953630	Intergenic	1	0.37	4E-13	12.39794000867204		    .28	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3q26.2	3	169383098	MECOM	MECOM			2122			rs419076-T	rs419076	0	419076	intron	0	0.47	2E-12	11.69897000433602		    .24	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5p13.3	5	32814922	NPR3, C5orf23	NPR3 - RPS8P8	4883	728553		       23.20	      347.23	rs1173771-G	rs1173771	0	1173771	Intergenic	1	0.60	9E-12	11.04575749056067		    .26	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	6	31648589	BAT2, BAT5	BAG6			7917			rs805303-G	rs805303	0	805303	intron	0	0.61	3E-11	10.52287874528034		    .23	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q32.1	4	155724361	GUCY1A3, GUCY1B3	GUCY1A3			2982			rs13139571-C	rs13139571	0	13139571	intron	0	0.76	2E-10	9.698970004336017		    .26	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10p12.33	10	18131043	CACNB2	SLC39A12 - CACNB2	221074	783		       87.75	        9.63	rs4373814-G	rs4373814	0	4373814	Intergenic	1	0.55	4E-10	9.397940008672037		    .22	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	1p13.2	1	112673921	MOV10	MOV10			4343			rs2932538-G	rs2932538	0	2932538	nearGene-5	0	0.75	1E-9	8.999999999999998		    .24	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3p24.1	3	27496418	SLC4A7	UBA52P4 - RPS27P11	100271030	100271115		        9.80	      127.73	rs13082711-T	rs13082711	0	13082711	Intergenic	1	0.78	4E-9	8.397940008672036		    .24	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11p15.4	11	10328991	ADM	CAND1.11			100130460			rs7129220-G	rs7129220	0	7129220	intron	0	0.89	6E-8	7.221848749616355		    .30	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q23.33	10	94136183	PLCE1	PLCE1			51196			rs932764-G	rs932764	0	932764	intron	0	0.44	8E-7	6.096910013008056		    .19	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20q13.32	20	59176062	GNAS, EDN3	ZNF831			128611			rs6015450-G	rs6015450	0	6015450	intron	0	0.12	4E-14	13.39794000867204		    .11	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11q22.1	11	100722807	FLJ32810, TMEM133	ARHGAP42			143872			rs633185-G	rs633185	0	633185	intron	0	0.28	5E-11	10.30102999566398		    .07	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	6	31648589	BAT2, BAT5	BAG6			7917			rs805303-G	rs805303	0	805303	intron	0	0.61	1E-10	10		    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p22.2	6	26090951	HFE	HFE			3077			rs1799945-G	rs1799945	0	1799945	missense	0	0.14	2E-10	9.698970004336017		    .10	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5p13.3	5	32814922	NPR3, C5orf23	NPR3 - RPS8P8	4883	728553		       23.20	      347.23	rs1173771-G	rs1173771	0	1173771	Intergenic	1	0.60	3E-10	9.522878745280336		    .06	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q23.33	10	94136183	PLCE1	PLCE1			51196			rs932764-G	rs932764	0	932764	intron	0	0.44	9E-9	8.045757490560675		    .06	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10p12.33	10	18131043	CACNB2	SLC39A12 - CACNB2	221074	783		       87.75	        9.63	rs4373814-G	rs4373814	0	4373814	Intergenic	1	0.55	9E-8	7.045757490560674		    .05	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5q33.3	5	158418394	EBF1	MARK2P11 - EBF1	100421484	1879		      428.41	      277.51	rs11953630-T	rs11953630	0	11953630	Intergenic	1	0.37	2E-7	6.698970004336019		    .05	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	1p13.2	1	112673921	MOV10	MOV10			4343			rs2932538-G	rs2932538	0	2932538	nearGene-5	0	0.75	3E-7	6.522878745280337		    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q24	4	102267552	SLC39A8	SLC39A8			64116			rs13107325-T	rs13107325	0	13107325	missense	0	0.05	5E-7	6.30102999566398		    .11	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q26.1	15	90894158	FURIN, FES	FES			2242			rs2521501-T	rs2521501	0	2521501	intron	0	0.31	7E-7	6.154901959985743		    .06	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q24.32	10	103086421	CYP17A1, NT5C2	CNNM2 - NT5C2	54805	22978		        7.83	        1.60	rs11191548-T	rs11191548	0	11191548	Intergenic	1	0.91	7E-26	25.15490195998574		   1.10	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q21.21	4	80243569	FGF5	PRDM8 - FGF5	56978	2250		       39.24	       23.02	rs1458038-T	rs1458038	0	1458038	Intergenic	1	0.29	2E-23	22.69897000433602		    .71	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20q13.32	20	59176062	GNAS, EDN3	ZNF831			128611			rs6015450-G	rs6015450	0	6015450	intron	0	0.12	4E-23	22.39794000867203		    .90	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q24.1	15	74785026	CYP1A1, ULK3	CSK			1445			rs1378942-C	rs1378942	0	1378942	intron	0	0.35	6E-23	22.22184874961636		    .61	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q26.1	15	90894158	FURIN, FES	FES			2242			rs2521501-T	rs2521501	0	2521501	intron	0	0.31	5E-19	18.30102999566398		    .65	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11q22.1	11	100722807	FLJ32810, TMEM133	ARHGAP42			143872			rs633185-G	rs633185	0	633185	intron	0	0.28	1E-17	17		    .57	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5p13.3	5	32814922	NPR3, C5orf23	NPR3 - RPS8P8	4883	728553		       23.20	      347.23	rs1173771-G	rs1173771	0	1173771	Intergenic	1	0.60	2E-16	15.69897000433602		    .50	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q23.33	10	94136183	PLCE1	PLCE1			51196			rs932764-G	rs932764	0	932764	intron	0	0.44	7E-16	15.15490195998574		    .48	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q24	4	102267552	SLC39A8	SLC39A8			64116			rs13107325-T	rs13107325	0	13107325	missense	0	0.05	3E-14	13.52287874528034		    .98	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3q26.2	3	169383098	MECOM	MECOM			2122			rs419076-T	rs419076	0	419076	intron	0	0.47	2E-13	12.69897000433602		    .41	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11p15.4	11	10328991	ADM	CAND1.11			100130460			rs7129220-G	rs7129220	0	7129220	intron	0	0.89	3E-12	11.52287874528034		    .62	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p22.2	6	26090951	HFE	HFE			3077			rs1799945-G	rs1799945	0	1799945	missense	0	0.14	8E-12	11.09691001300806		    .63	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	6p21.33	6	31648589	BAT2, BAT5	BAG6			7917			rs805303-G	rs805303	0	805303	intron	0	0.61	2E-11	10.69897000433602		    .38	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	5q33.3	5	158418394	EBF1	MARK2P11 - EBF1	100421484	1879		      428.41	      277.51	rs11953630-T	rs11953630	0	11953630	Intergenic	1	0.37	3E-11	10.52287874528034		    .41	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10p12.33	10	18131043	CACNB2	SLC39A12 - CACNB2	221074	783		       87.75	        9.63	rs4373814-G	rs4373814	0	4373814	Intergenic	1	0.55	5E-11	10.30102999566398		    .37	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	17q21.32	17	46935905	GOSR2	GOSR2			9570			rs17608766-T	rs17608766	0	17608766	intron	0	0.86	1E-10	10		    .56	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	1p13.2	1	112673921	MOV10	MOV10			4343			rs2932538-G	rs2932538	0	2932538	nearGene-5	0	0.75	1E-9	8.999999999999998		    .39	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20p12.2	20	10988382	JAG1	FAT1P1 - RPS11P1	170513	128718		       99.29	      357.00	rs1327235-G	rs1327235	0	1327235	Intergenic	1	0.46	2E-8	7.698970004336018		    .34	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	4q32.1	4	155724361	GUCY1A3, GUCY1B3	GUCY1A3			2982			rs13139571-C	rs13139571	0	13139571	intron	0	0.76	1E-6	5.999999999999999		    .32	[NR] mmHg increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/21/2011	21909115	Ehret GB	09/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21909115	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3p24.1	3	27496418	SLC4A7	UBA52P4 - RPS27P11	100271030	100271115		        9.80	      127.73	rs13082711-T	rs13082711	0	13082711	Intergenic	1	0.78	2E-6	5.698970004336018		    .32	[NR] mmHg decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	4q31.22	4	145900258	ZNF827	ZNF827			152485			rs4835265-T	rs4835265	0	4835265	intron	0	0.42	1E-14	14		    .00	[0.0031-0.0055] IU/L decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	7q11.23	7	73563568	TBL2	SPDYE9P			643909			rs12539316-C	rs12539316	0	12539316		0	0.10	6E-10	9.221848749616356		    .01	[0.0035-0.0067] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.11	12	110976657	MYL2	MYL2 - CUX2	4633	23316		       56.06	       57.37	rs12229654-G	rs12229654	0	12229654	Intergenic	1	0.14	9E-58	57.04575749056067		    .01	[0.011-0.013] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	0.15	3E-126	125.5228787452803		    .02	[0.015-0.017] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	12	112927816	Intergenic	OAS1 - OAS3	4938	4940		        7.91	       10.63	rs11066453-G	rs11066453	0	11066453	Intergenic	1	0.13	6E-44	43.22184874961636		    .01	[0.0083-0.0111] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.31	12	120986153	HNF1A	HNF1A			6927			rs2393791-G	rs2393791	0	2393791	intron	0	0.48	7E-30	29.15490195998574		    .01	[0.0062-0.0090] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	22q11.23	22	24594246	GGT1, C22orf36	GGT1;LRRC75B			2678;388886			rs4820599-G	rs4820599	0	4820599	intron;nearGene-5	0	0.24	7E-53	52.15490195998574		    .01	[0.0076-0.0100] IU/L decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.11	12	110976657	MYL2	MYL2 - CUX2	4633	23316		       56.06	       57.37	rs12229654-G	rs12229654	0	12229654	Intergenic	1	0.14	3E-23	22.52287874528034		    .03	[0.023-0.033] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	0.15	7E-37	36.15490195998574		    .04	[0.030-0.040] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	12	112971371	OAS3	OAS3			4940			rs2072134-A	rs2072134	0	2072134	UTR-3	0	0.11	6E-6	5.221848749616356		    .02	[0.012-0.029] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	8p21.3	8	19990179	LPL	LPL - RPL30P9	4023	100270981		       22.92	      123.16	rs10503669-T	rs10503669	0	10503669	Intergenic	1	0.12	8E-43	42.09691001300805		    .04	[0.037-0.049] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	9q31.1	9	104891145	ABCA1	ABCA1			19			rs12686004-T	rs12686004	0	12686004	intron	0	0.21	2E-18	17.69897000433602		    .02	[0.017-0.027] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	11q23.3	11	116746524	Intergenic	RPL15P15 - BUD13	100128347	84811		      795.72	        1.65	rs11216126-C	rs11216126	0	11216126	Intergenic	1	0.20	3E-34	33.52287874528034		    .03	[0.027-0.037] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	15q21.3	15	58401821	Intergenic	LOC102724766			102724766			rs16940212-T	rs16940212	0	16940212	intron	0	0.34	1E-24	24		    .02	[0.018-0.027] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	16q13	16	56978467	CETP	CETP			1071			rs12708980-C	rs12708980	0	12708980	intron	0	0.10	2E-28	27.69897000433602		    .04	[0.033-0.047] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	19q13.32	19	44873027	PVRL2, TOMM40, APOE	PVRL2			5819			rs519113-C	rs519113	0	519113	intron	0	0.15	8E-11	10.09691001300805		    .02	[0.012-0.023] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	9q34.2	9	133278431	ABO	ABO - SURF6	28	6838		        3.22	       52.28	rs651007-A	rs651007	0	651007	Intergenic	1	0.26	6E-9	8.221848749616356	(LDL)	   2.28	[1.51-3.05] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	1p13.3	1	109279544	CELSR2, PSRC1, SORT1	PSRC1			84722			rs599839-G	rs599839	0	599839	nearGene-3	0	0.06	2E-19	18.69897000433602	(LDL)	   5.23	[4.09-6.37] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	5q13.3	5	75352778	HMGCR	HMGCR			3156			rs12654264-T	rs12654264	0	12654264	intron	0	0.48	1E-20	20	(LDL)	   2.71	[2.14-3.28] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	19p13.2	19	11116650	LDLR	LDLR			3949			rs2738446-C	rs2738446	0	2738446	intron	0	0.14	2E-12	11.69897000433602	(LDL)	   2.95	[2.13-3.77] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2p21	2	44961214	SIX2, SIX3	SIX3 - SIX2	6496	10736		       15.14	       43.97	rs895636-A	rs895636	0	895636	Intergenic	1	0.38	1E-12	12	(FPG)	    .04	[0.029-0.050] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2q31.1	2	168927903	ABCB11	ABCB11			8647			rs16856247-T	rs16856247	0	16856247	intron	0	0.35	2E-15	14.69897000433602	(FPG)	    .06	[0.042-0.069] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	7p13	7	44189469	GCK	GCK			2645			rs1799884-A	rs1799884	0	1799884	nearGene-5	0	0.19	2E-19	18.69897000433602	(FPG)	    .06	[0.049-0.075] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	11q14.3	11	92965261	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      466.30	        4.36	rs10830962-C	rs10830962	0	10830962	Intergenic	1	0.45	1E-16	16	(FPG)	    .04	[0.034-0.055] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	19q13.33	19	49496752	RPS11	RPS11;SNORD35B			6205;84546			rs2280401-A	rs2280401	0	2280401	intron;nearGene-5	0	0.17	9E-13	12.04575749056067	(ALB)	    .03	[0.021-0.037] g/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2p23.3	2	27520287	GCKR	GCKR			2646			rs780092-G	rs780092	0	780092	intron	0	0.33	5E-18	17.30102999566398	(ALB)	    .02	[-0.02972-0.07612] g/dL decrea	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	6q22.33	6	127172466	RSPO3	RSPO3			84870			rs6569474-A	rs6569474	0	6569474	intron	0	0.47	1E-8	8	(BUN)	    .01	[0.0059-0.0121] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	3q27.3	3	187999752	Intergenic	BCL6 - LPP-AS2	604	339929		      254.03	      151.45	rs4686914-T	rs4686914	0	4686914	Intergenic	1	0.38	3E-21	20.52287874528034	(BUN)	    .02	[0.019-0.029] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	3p14.1	3	66759518	Intergenic	RPL21P41 - KBTBD8	100271159	84541		      121.98	      238.79	rs13069049-T	rs13069049	0	13069049	Intergenic	1	0.17	3E-18	17.52287874528034	(BUN)	    .02	[0.014-0.022] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	18q12.3	18	45622439	SLC14A2	SLC14A2			8170			rs7232775-C	rs7232775	0	7232775	intron	0	0.20	8E-14	13.09691001300805	(BUN)	    .01	[0.011-0.019] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	12	112379979	C12orf51	HECTD4			283450			rs11066280-A	rs11066280	0	11066280	intron	0	0.17	8E-22	21.09691001300805	(ALT)	    .00	[0.0035-0.0055] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	22q13.31	22	43930116	PNPLA3	PNPLA3			80339			rs12483959-A	rs12483959	0	12483959	intron	0	0.42	2E-18	17.69897000433602	(ALT)	    .00	[0.0031-0.0047] IU/L decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	12	112379979	C12orf51	HECTD4			283450			rs11066280-A	rs11066280	0	11066280	intron	0	0.17	3E-63	62.52287874528033	(ALT)	    .00	[0.0014-0.0018] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	22q13.31	22	43930116	PNPLA3	PNPLA3			80339			rs12483959-A	rs12483959	0	12483959	intron	0	0.42	2E-39	38.69897000433601	(ALT)	    .00	[0.00080-0.00120] IU/L increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2p23.3	2	27520287	GCKR	GCKR			2646			rs780092-G	rs780092	0	780092	intron	0	0.33	5E-27	26.30102999566398		    .05	[0.041-0.059] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	7q11.23	7	73573024	TBL2, MLXIPL	TBL2			26608			rs2286276-T	rs2286276	0	2286276	intron	0	0.10	1E-15	15		    .07	[0.049-0.081] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	8p21.3	8	19990179	LPL	LPL - RPL30P9	4023	100270981		       22.92	      123.16	rs10503669-T	rs10503669	0	10503669	Intergenic	1	0.12	7E-39	38.15490195998574		    .09	[0.073-0.098] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	8q24.13	8	125465736	Intergenic	TRIB1 - LINC00861	10221	100130231		       27.33	      456.79	rs2001945-C	rs2001945	0	2001945	Intergenic	1	0.42	1E-20	20		    .04	[0.032-0.049] mg/dL increase	Affymetrix [~2.2 million] (imputed)	N
10/11/2011	21909109	Kim YJ	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909109	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	11q23.3	11	116783719	ZNF259, APOA1, APOC3, APOA4, APOA5, BUD13	ZPR1			8882			rs603446-T	rs603446	0	603446	intron	0	0.23	2E-86	85.698970004336		    .09	[0.079-0.096] mg/dL decrease	Affymetrix [~2.2 million] (imputed)	N
10/06/2011	21909107	Lemaire SA	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909107	Genome-wide association study identifies a susceptibility locus for thoracic aortic aneurysms and aortic dissections spanning FBN1 at 15q21.1.	Thoracic aortic aneurysms and dissections	765 European ancestry cases, 874 European ancestry controls	548 European ancestry cases, 626 European ancestry controls	15q21.1	15	48622578	FBN1	FBN1			2200			rs1036476-?	rs1036476	0	1036476	intron	0	NR	6E-13	12.22184874961636		   1.90	[NR] 	Illumina [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	2q24.3	2	164058698	FIGN	FIGN - PRPS1P1	55137	100861436		      322.59	      154.84	rs13002573-G	rs13002573	0	13002573	Intergenic	1	0.20	2E-8	7.698970004336018	(Pulse Pressure)	    .31	[0.20-0.42] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q12	4	53933078	CHIC2	LNX1-AS2 - RPL21P44	100873955	402176		      327.70	       52.41	rs871606-T	rs871606	0	871606	Intergenic	1	0.85	1E-8	8	(Pulse Pressure)	    .43	[0.28-0.58] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	7q22.3	7	106771412	PIK3CG	CCDC71L - RNA5SP236	168455	100873494		      110.22	       10.19	rs17477177-T	rs17477177	0	17477177	Intergenic	1	0.72	2E-13	12.69897000433602	(Pulse Pressure)	    .42	[0.31-0.53] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	8q24.12	8	119423572	NOV	NOV			4856			rs2071518-T	rs2071518	0	2071518	UTR-3	0	0.17	4E-9	8.397940008672036	(Pulse Pressure)	    .31	[0.21-0.41] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11q24.3	11	130403335	ADAMTS-8	DDX18P5 - ADAMTS8	646378	11095		      105.95	        1.59	rs11222084-T	rs11222084	0	11222084	Intergenic	1	0.38	2E-11	10.69897000433602	(Pulse Pressure)	    .34	[0.24-0.44] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q23.33	10	94135420	PLCE-1	PLCE1			51196			rs9663362-G	rs9663362	0	9663362	intron	0	0.53	5E-9	8.301029995663981	(Pulse Pressure)	    .27	[0.18-0.36] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q21.33	12	89666809	ATP2B1	ATP2B1			490			rs17249754-G	rs17249754	0	17249754	intron	0	0.89	6E-10	9.221848749616356	(Pulse Pressure)	    .39	[0.27-0.52] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	17q21.32	17	46935905	GOSR2	GOSR2			9570			rs17608766-T	rs17608766	0	17608766	intron	0	0.91	6E-15	14.22184874961635	(Pulse Pressure)	    .53	[0.40-0.67] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	2q24.3	2	164106976	FIGN	FIGN - PRPS1P1	55137	100861436		      370.87	      106.56	rs1446468-T	rs1446468	0	1446468	Intergenic	1	0.53	6E-12	11.22184874961635	(Mean Arterial Pressure)	    .34	[0.24-0.44] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q25.3	10	114021768	ADRB1	NHLRC2 - ADRB1	374354	153		      109.26	       22.28	rs2782980-T	rs2782980	0	2782980	Intergenic	1	0.20	2E-9	8.698970004336019	(Mean Arterial Pressure)	    .34	[0.23-0.45] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	1p36.22	1	11802721	MTHFR, NPPB	MTHFR			4524			rs17367504-G	rs17367504	0	17367504	intron	0	0.17	2E-16	15.69897000433602	(Mean Arterial Pressure)	    .53	[0.40-0.66] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3p24.1	3	27496418	SLC4A7	UBA52P4 - RPS27P11	100271030	100271115		        9.80	      127.73	rs13082711-T	rs13082711	0	13082711	Intergenic	1	0.80	5E-9	8.301029995663981	(Mean Arterial Pressure)	    .34	[0.22-0.45] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q24	4	102267552	SLC39A8	SLC39A8			64116			rs13107325-T	rs13107325	0	13107325	missense	0	0.12	1E-10	10	(Mean Arterial Pressure)	    .63	[0.44-0.82] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	5p13.3	5	32814922	NPR3, C5orf23	NPR3 - RPS8P8	4883	728553		       23.20	      347.23	rs1173771-G	rs1173771	0	1173771	Intergenic	1	0.53	4E-9	8.397940008672036	(Mean Arterial Pressure)	    .28	[0.19-0.37] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	5q33.3	5	158377449	EBF1	LOC101927697			101927697			rs9313772-T	rs9313772	0	9313772	intron	0	0.32	1E-11	11	(Mean Arterial Pressure)	    .34	[0.24-0.44] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10p12.31	10	18439030	CACNB2	CACNB2			783			rs12258967-G	rs12258967	0	12258967	intron	0	0.36	2E-16	15.69897000433602	(Mean Arterial Pressure)	    .43	[0.33-0.53] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q21.2	10	61707795	C10orf107	C10orf107			219621			rs4590817-G	rs4590817	0	4590817	intron	0	0.83	2E-18	17.69897000433602	(Mean Arterial Pressure)	    .58	[0.45-0.71] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q24.33	10	103179458	CYP17A1, NT5C2	NT5C2			22978			rs11191593-T	rs11191593	0	11191593	intron	0	0.94	1E-15	15	(Mean Arterial Pressure)	    .66	[0.50-0.82] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q21.33	12	89666809	ATP2B1	ATP2B1			490			rs17249754-G	rs17249754	0	17249754	intron	0	0.89	1E-17	17	(Mean Arterial Pressure)	    .56	[0.43-0.69] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q24.12	12	111569952	ATXN2	ATXN2			6311			rs653178-T	rs653178	0	653178	intron	0	0.59	7E-20	19.15490195998574	(Mean Arterial Pressure)	    .43	[0.34-0.52] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	15q24.1	15	74785026	CSK	CSK			1445			rs1378942-C	rs1378942	0	1378942	intron	0	0.33	2E-15	14.69897000433602	(Mean Arterial Pressure)	    .39	[0.29-0.48] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	15q26.1	15	90894158	FES	FES			2242			rs2521501-T	rs2521501	0	2521501	intron	0	0.37	3E-8	7.522878745280337	(Mean Arterial Pressure)	    .34	[0.22-0.46] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	20p12.2	20	10988382	JAG1	FAT1P1 - RPS11P1	170513	128718		       99.29	      357.00	rs1327235-G	rs1327235	0	1327235	Intergenic	1	0.58	4E-8	7.397940008672037	(Mean Arterial Pressure)	    .26	[0.17-0.35] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3p21.31	3	47885994	MAP4	MAP4			4134			rs319690-T	rs319690	0	319690	intron	0	0.51	3E-8	7.522878745280337	(Mean Arterial Pressure)	    .30	[0.20-0.40] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	6p22.2	6	26107235	HFE	HIST1H1T			3010			rs198846-G	rs198846	0	198846	nearGene-3	0	0.86	2E-12	11.69897000433602	(Mean Arterial Pressure)	    .48	[0.35-0.61] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11p15.1	11	16880721	PLEKHA7	PLEKHA7			144100			rs381815-T	rs381815	0	381815	intron	0	0.30	3E-8	7.522878745280337	(Mean Arterial Pressure)	    .30	[0.19-0.41] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11p15.4	11	10328991	ADM	CAND1.11			100130460			rs7129220-G	rs7129220	0	7129220	intron	0	0.87	4E-7	6.397940008672037	(Pulse Pressure)	    .38	[0.23-0.53] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q24.32	10	103086421	CYP17A1, NT5C2	CNNM2 - NT5C2	54805	22978		        7.83	        1.60	rs11191548-T	rs11191548	0	11191548	Intergenic	1	0.94	8E-11	10.09691001300805	(Pulse Pressure)	    .53	[0.37-0.69] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	20q13.32	20	59176062	GNAS, EDN3	ZNF831			128611			rs6015450-G	rs6015450	0	6015450	intron	0	0.07	2E-6	5.698970004336018	(Pulse Pressure)	    .35	[0.21-0.49] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	5p13.3	5	32814922	NPR3, C5orf23	NPR3 - RPS8P8	4883	728553		       23.20	      347.23	rs1173771-G	rs1173771	0	1173771	Intergenic	1	0.53	5E-9	8.301029995663981	(Pulse Pressure)	    .28	[0.18-0.37] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11p15.1	11	16880721	PLEKHA7	PLEKHA7			144100			rs381815-T	rs381815	0	381815	intron	0	0.30	7E-6	5.154901959985742	(Pulse Pressure)	    .24	[0.13-0.34] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3p22.1	3	41835922	ULK4	ULK4			54986			rs3774372-T	rs3774372	0	3774372	missense	0	0.78	8E-7	6.096910013008056	(Pulse Pressure)	    .30	[0.18-0.42] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q21.21	4	80243569	FGF5	PRDM8 - FGF5	56978	2250		       39.24	       23.02	rs1458038-T	rs1458038	0	1458038	Intergenic	1	0.30	3E-14	13.52287874528034	(Mean Arterial Pressure)	    .40	[0.30-0.51] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11q22.1	11	100722807	FLJ32810, TMEM133	ARHGAP42			143872			rs633185-G	rs633185	0	633185	intron	0	0.32	7E-10	9.154901959985741	(Mean Arterial Pressure)	    .33	[0.22-0.43] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	20q13.32	20	59176062	GNAS, EDN3	ZNF831			128611			rs6015450-G	rs6015450	0	6015450	intron	0	0.07	2E-12	11.69897000433602	(Mean Arterial Pressure)	    .52	[0.38-0.67] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	17q21.32	17	46935905	GOSR2	GOSR2			9570			rs17608766-T	rs17608766	0	17608766	intron	0	0.91	2E-7	6.698970004336019	(Mean Arterial Pressure)	    .36	[0.23-0.50] mmHg decrease	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	4q32.1	4	155724361	GUCY1A3, GUCY1B3	GUCY1A3			2982			rs13139571-C	rs13139571	0	13139571	intron	0	0.74	3E-7	6.522878745280337	(Mean Arterial Pressure)	    .29	[0.18-0.40] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3q26.2	3	169383098	MECOM	MECOM			2122			rs419076-T	rs419076	0	419076	intron	0	0.44	8E-13	12.09691001300806	(Mean Arterial Pressure)	    .34	[0.25-0.43] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	1p13.2	1	112673921	MOV10	MOV10			4343			rs2932538-G	rs2932538	0	2932538	nearGene-5	0	0.74	8E-6	5.096910013008055	(Mean Arterial Pressure)	    .25	[0.14-0.36] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q24.21	12	114914926	TBX5, TBX3	TBX3 - UBA52P7	6926	100128617		      230.76	      677.68	rs2384550-G	rs2384550	0	2384550	Intergenic	1	0.66	4E-6	5.397940008672037	(Mean Arterial Pressure)	    .23	[0.13-0.32] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/11/2011	21909110	Wain LV	09/11/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21909110	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	17q21.33	17	49325445	ZNF652	ZNF652			22834			rs12940887-T	rs12940887	0	12940887	intron	0	0.42	2E-7	6.698970004336019	(Mean Arterial Pressure)	    .25	[0.16-0.35] mmHg increase	Affymetrix, Illumina, and Perlegen [NR] (imputed)	N
10/01/2011	21896673	Chen D	09/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21896673	Genome-wide association study of HPV seropositivity.	HPV seropositivity	1,286 European ancestry lung cancer cases, 679 European ancestry head and neck cancer cases, 811 European ancestry kidney cancer cases, 2,035 European ancestry controls	1,307 Hispanic head and neck cancer cases, 1,037 Hispanic controls	6p21.32	6	32697183	HLA-DQB1	TRNAI25			100189401			rs9357152-G	rs9357152	0	9357152		0	0.33	1E-14	14		NR	NR	Illumina [316,015]	N
09/30/2011	21907864	Ferreira MA	09/10/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21907864	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	13q21.31	13	63064196	PCDH20	RPL32P28 - LINC00395	100133193	100874157		      735.80	      603.49	rs3119939-?	rs3119939	0	3119939	Intergenic	1	0.51	8E-6	5.096910013008055		   1.08	[1.04-1.10] 	Illumina [NR] (imputed)	N
09/30/2011	21907864	Ferreira MA	09/10/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21907864	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	10q21.1	10	51733713	PRKG1	PRKG1			5592			rs7922491-A	rs7922491	0	7922491	intron	0	0.11	5E-7	6.30102999566398		   1.13	[1.08-1.19] 	Illumina [NR] (imputed)	N
09/30/2011	21907864	Ferreira MA	09/10/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21907864	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	1q21.3	1	154453788	IL6R	IL6R			3570			rs4129267-T	rs4129267	0	4129267	intron	0	0.37	2E-8	7.698970004336018		   1.09	[1.06-1.12] 	Illumina [NR] (imputed)	N
09/30/2011	21907864	Ferreira MA	09/10/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21907864	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	11q13.5	11	76559639	LRRC32	C11orf30 - LRRC32	56946	2615		        6.74	       97.89	rs7130588-G	rs7130588	0	7130588	Intergenic	1	0.34	2E-8	7.698970004336018		   1.09	[1.06-1.13] 	Illumina [NR] (imputed)	N
09/30/2011	21908515	Cai Q	09/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21908515	Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium.	Breast cancer	2,062 East Asian ancestry cases, 2,066 East Asian ancestry controls	15,091 East Asian ancestry cases, 14,877 East Asian ancestry controls	7q32.3	7	130969092	NR	LINC-PINT			378805			rs2048672-C	rs2048672	0	2048672	intron	0	0.45	6E-6	5.221848749616356		   1.11	[1.05-1.17] 	Affymetrix [684,457]	N
09/30/2011	21908515	Cai Q	09/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21908515	Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium.	Breast cancer	2,062 East Asian ancestry cases, 2,066 East Asian ancestry controls	15,091 East Asian ancestry cases, 14,877 East Asian ancestry controls	10q21.2	10	62492218	ZNF365	ZNF365			22891			rs10822013-T	rs10822013	0	10822013	intron	0	0.47	6E-9	8.221848749616356		   1.12	[1.06-1.18] 	Affymetrix [684,457]	N
10/04/2011	21912186	Smith AK	09/09/2011	Neuropsychobiology	http://www.ncbi.nlm.nih.gov/pubmed/21912186	Convergent genomic studies identify association of GRIK2 and NPAS2 with chronic fatigue syndrome.	Chronic fatigue syndrome	40 European ancestry cases, 40 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [93,508]	N
10/04/2011	21931568	Geller F	09/08/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21931568	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 Other ancestry individuals	12q14.3	12	65970729	HMGA2	HMGA2 - MIR6074	8091	102464827		        4.44	       52.89	rs12424086-C	rs12424086	0	12424086	Intergenic	1	0.18	2E-12	11.69897000433602		    .11	[0.08-0.14] unit decrease	Illumina [521,741]	N
10/04/2011	21931568	Geller F	09/08/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21931568	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 Other ancestry individuals	2q35	2	217030033	TNP1	TNP1 - DIRC3	7141	729582		      169.97	      253.99	rs4491709-T	rs4491709	0	4491709	Intergenic	1	0.71	2E-14	13.69897000433602		    .10	[0.07-0.13] unit decrease	Illumina [521,741]	N
10/04/2011	21931568	Geller F	09/08/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21931568	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 Other ancestry individuals	1q32.1	1	201112815	CACNA1S	CACNA1S			779			rs2281845-T	rs2281845	0	2281845	nearGene-5	0	0.38	8E-17	16.09691001300806		    .10	[0.08-0.12] unit decrease	Illumina [521,741]	N
10/04/2011	21931568	Geller F	09/08/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21931568	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 Other ancestry individuals	10q22.2	10	74536031	ADK	ADK			132			rs7924176-G	rs7924176	0	7924176	intron	0	0.43	6E-18	17.22184874961635		    .11	[0.08-0.13] unit decrease	Illumina [521,741]	N
09/30/2011	21900946	Nakabayashi K	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900946	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.32	6	32369853	MHC	C6orf10			10665			rs2273017-A	rs2273017	0	2273017	intron	0	0.51	2E-22	21.69897000433602		   1.53	[1.40-1.66] 	Perlgen [268,068]	N
09/30/2011	21900946	Nakabayashi K	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900946	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	6	29967473	MHC	TRNAI25			100189401			rs3893464-G	rs3893464	0	3893464		0	0.36	2E-20	19.69897000433602		   1.53	[1.39-1.67] 	Perlgen [268,068]	N
09/30/2011	21900946	Nakabayashi K	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900946	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p22.1	6	30006148	MHC	HLA-J;ZNRD1-AS1			3137;80862			rs4313034-T	rs4313034	0	4313034	intron;intron	0	0.83	2E-15	14.69897000433602		   1.67	[1.47-1.90] 	Perlgen [268,068]	N
09/30/2011	21900946	Nakabayashi K	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900946	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	6	30569829	MHC	ABCF1			23			rs3132613-C	rs3132613	0	3132613	nearGene-5	0	0.25	1E-13	13		   1.43	[1.30-1.57] 	Perlgen [268,068]	N
09/30/2011	21900946	Nakabayashi K	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900946	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.33	6	31034839	MHC	MUC22			100507679			rs4248154-C	rs4248154	0	4248154	cds-synon	0	0.54	1E-13	13		   1.38	[1.27-1.50] 	Perlgen [268,068]	N
09/30/2011	21900946	Nakabayashi K	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900946	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.31	6	33650385	MHC	ITPR3			3710			rs9394159-T	rs9394159	0	9394159	intron	0	0.53	4E-12	11.39794000867204		   1.36	[1.24-1.48] 	Perlgen [268,068]	N
09/30/2011	21900946	Nakabayashi K	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900946	Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.	Graves' disease	1,119 Japanese ancestry cases, 2,718 Japanese ancestry controls	432 Japanese ancestry cases, 1,157 Japanese ancestry controls	6p21.31	6	33850152	MHC	TRNAI25			100189401			rs4713693-T	rs4713693	0	4713693		0	0.65	7E-13	12.15490195998574		   1.40	[1.28-1.53] 	Perlgen [268,068]	N
02/10/2012	21931564	Nicholson G	09/08/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21931564	A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.	Metabolite levels	142 European ancestry female twins	202 European ancestry individuals	10q24.2	10	98397096	PYROXD2, C10orf33	PYROXD2;MIR1287			84795;100302133			rs7072216-C	rs7072216	0	7072216	intron;nearGene-5	0	NR	8E-15	14.09691001300805	(TMAu)	   1.19	[0.95-1.43] unit decrease	Illumina [2,541,644] (imputed)	N
02/10/2012	21931564	Nicholson G	09/08/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21931564	A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.	Metabolite levels	142 European ancestry female twins	202 European ancestry individuals	2p13.1	2	73516855	ALMS1, NAT8, TPRKB, DUSP11	ALMS1			7840			rs9309473-G	rs9309473	0	9309473	intron	0	NR	1E-11	11	(N-ACu)	   1.10	[0.85-1.35] unit increase	Illumina [2,541,644] (imputed)	N
02/10/2012	21931564	Nicholson G	09/08/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21931564	A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.	Metabolite levels	142 European ancestry female twins	202 European ancestry individuals	5p13.2	5	35037010	AGXT2	AGXT2			64902			rs37369-T	rs37369	0	37369	missense	0	NR	1E-6	5.999999999999999	(BAIBu)	   1.25	[0.80-1.70] unit increase	Illumina [2,541,644] (imputed)	N
09/28/2011	21900944	Shen H	09/08/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21900944	Genome-wide association study identifies genetic variants in GOT1 determining serum aspartate aminotransferase levels.	Aspartate aminotransferase 	866 Old Order Amish individuals	NA	10q24.2	10	98367794	GOT1	LOXL4 - PYROXD2	84171	84795		       99.54	       15.77	rs17109512	rs17109512	0	17109512	Intergenic	1	0.006	3E-14	13.52287874528034		NR	NR	Affymetrix [373,825]	N
09/30/2011	21900290	Qi Q	09/06/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/21900290	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q25.3	6	160320590	SLC22A3	SLC22A2 - SLC22A3	6582	6581		       61.66	       27.78	rs3120139-A	rs3120139	0	3120139	Intergenic	1	0.13	4E-9	8.397940008672036		    .32	[0.22-0.42] mg/dL increase	Illumina [~2.5 million] (imputed)	N
09/30/2011	21900290	Qi Q	09/06/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/21900290	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q25.3	6	160489485	LPAL2	LPAL2			80350			rs12214416-A	rs12214416	0	12214416	intron	0	0.04	5E-8	7.30102999566398		    .50	[0.32-0.68] decrease mg/dL	Illumina [~2.5 million] (imputed)	N
09/30/2011	21900290	Qi Q	09/06/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/21900290	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q26	6	160589086	LPA	LPA			4018			rs10455872-G	rs10455872	0	10455872	intron	0	0.07	5E-39	38.30102999566397		   1.28	[1.08-1.48] mg/dL increase	Illumina [~2.5 million] (imputed)	N
09/30/2011	21900290	Qi Q	09/06/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/21900290	Genetic variants, plasma lipoprotein(a) levels, and risk of cardiovascular morbidity and mortality among two prospective cohorts of type 2 diabetes.	Lp (a) levels	1,450 European ancestry individuals	NA	6q26	6	160716958	PLG	PLG			5340			rs783147-A	rs783147	0	783147	intron	0	0.45	3E-17	16.52287874528034		    .30	[0.22-0.38] mg/dL decrease	Illumina [~2.5 million] (imputed)	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	12q24.31	12	120722812	ACADS	UNC119B;MIR4700			84747;100616329			rs2066938-G	rs2066938	0	2066938	UTR-3;nearGene-5	0	0.252	4E-305	304.397940008672	(SM-1 + 12 other traits)	    .61	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2p13.1	2	73591809	NAT8	ALMS1			7840			rs13391552-A	rs13391552	0	13391552	intron	0	0.216	5E-252	251.301029995664	(SM-2 + 2 other traits)	    .37	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	11q12.2	11	61803311	FADS1	FADS1			3992			rs174547-C	rs174547	0	174547	intron	0	0.32	9E-116	115.0457574905607	(SM-3 + 152 other traits)	    .18	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2q37.1	2	233759924	UGT1A	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs887829-T	rs887829	0	887829	intron;intron;intron;intron;intron;intron;intron;nearGene-5;intron	0	0.337	3E-74	73.52287874528034	(SM-4 + 74 other traits)	    .29	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p31.1	1	75640990	ACADM	RPL29P5 - ACADM	646417	34		       58.32	       83.36	rs211718-T	rs211718	0	211718	Intergenic	1	0.304	2E-71	70.69897000433602	(SM-5 + 17 other traits)	    .16	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	8q24.3	8	144084619	OPLAH	GPAA1			8733			rs6558295-G	rs6558295	0	6558295	intron	0	0.083	2E-59	58.69897000433601	(5-oxoproline)	    .12	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	10q24.31	10	100315722	SCD	PKD2L1			9033			rs603424-A	rs603424	0	603424	intron	0	0.189	3E-57	56.52287874528033	(SM-6 + 94 other traits)	    .12	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	0.399	6E-53	52.22184874961636	(glucose/mannose + 54 other traits)	    .10	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	8p22	8	18415790	NAT2	NAT2 - PSD3	10	23362		       14.58	      111.51	rs1495743-G	rs1495743	0	1495743	Intergenic	1	0.188	2E-40	39.69897000433601	(SM-7 + 11 other traits)	    .26	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	7q22.1	7	99891948	CYP3A4	TRIM4			89122			rs17277546-A	rs17277546	0	17277546	UTR-3	0	0.045	9E-40	39.04575749056067	(androsterone sulfate + 2 other traits)	    .48	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	9q34.2	9	133268030	ABO	ABO			28			rs612169-G	rs612169	0	612169	intron	0	0.335	9E-40	39.04575749056067	(SM-8 + 3 other traits)	    .20	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4p16.1	4	9954455	SLC2A9	SLC2A9			56606			rs4481233-T	rs4481233	0	4481233	intron	0	0.193	6E-34	33.22184874961636	(urate, histidine)	    .07	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p33	1	46938514	CYP4A	CYP4A11			1579			rs9332998-C	rs9332998	0	9332998	intron	0	0.135	5E-32	31.30102999566398	(SM-9 + 17 other traits)	    .16	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2q34	2	210752170	CPS1	CPS1-IT1 - RPS27P10	29034	646233		      132.29	      546.71	rs2216405-G	rs2216405	0	2216405	Intergenic	1	0.177	2E-27	26.69897000433602	(glycine + 17 other traits)	    .12	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	15q22.2	15	63130573	LACTB	LACTB			114294			rs2652822-C	rs2652822	0	2652822	intron	0	0.467	7E-27	26.15490195998574	(succinylcarnitine)	    .09	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6q25.3	6	160143444	SLC22A1	SLC22A1			6580			rs662138-G	rs662138	0	662138	intron	0	0.163	7E-25	24.15490195998574	(isobutyrylcarnitine + 3 other traits)	    .16	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	12p12.1	12	21225087	SLCO1B1	SLCO1B1			10599			rs4149081-A	rs4149081	0	4149081	intron	0	0.205	3E-22	21.52287874528033	(SM-10 + 59 other traits)	    .21	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	19q13.33	19	48705753	FUT2	FUT2			2524			rs503279-C	rs503279	0	503279	UTR-3	0	0.464	4E-20	19.39794000867203	(SM-11 + 2 other traits)	    .13	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	17q23.3	17	63486097	ACE	ACE			1636			rs4329-G	rs4329	0	4329	intron	0	0.465	8E-20	19.09691001300806	(aspartylphenylalanine)	    .13	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p12	1	119714953	PHGDH	PHGDH			26227			rs477992-A	rs477992	0	477992	intron	0	0.313	3E-14	13.52287874528034	(serine)	    .05	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4q25	4	110413574	ENPEP	RPL7L1P13 - ZNF969P	100133103	100130995		       13.06	        2.69	rs2087160-G	rs2087160	0	2087160	Intergenic	1	0.207	7E-13	12.15490195998574	(SM-12 + 1 other trait)	    .12	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	10p15.1	10	5095844	AKR1C	AKR1C3			8644			rs2518049-A	rs2518049	0	2518049	intron	0	0.175	7E-13	12.15490195998574	(SM-13)	    .07	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6q14.3	6	85407411	NT5E	KRT18P30 - DUTP5	643858	100873911		      121.75	       19.24	rs494562-G	rs494562	0	494562	Intergenic	1	0.106	7E-13	12.15490195998574	(inosine + 1 other trait)	    .30	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	22q11.21	22	18984937	PRODH	DGCR5			26220;100996369			rs2023634-G	rs2023634	0	2023634	intron;nearGene-5	0	0.091	2E-22	21.69897000433602	(proline + 5 other traits)	    .11	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	11p15.1	11	18303599	HPS5	HPS5			11234			rs2403254-T	rs2403254	0	2403254	intron	0	0.525	1E-20	20	(alpha-hydroxyisovalerate + 6 other traits)	    .11	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p36.12	1	21494497	ALPL	PFN1P10 - ALPL	767853	249		       34.30	       14.49	rs10799701-A	rs10799701	0	10799701	Intergenic	1	0.435	3E-20	19.52287874528034	(SM-14 + 6 other traits)	    .13	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	16q22.1	16	68292297	SLC7A6	SLC7A6			9057			rs6499165-A	rs6499165	0	6499165	intron	0	0.266	1E-18	18	(glutaroyl carnitine/lysine + 3 other traits)	    .11	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4q35.2	4	186236304	KLKB1	KLKB1			3818			rs4253252-T	rs4253252	0	4253252	intron	0	0.492	7E-18	17.15490195998574	(bradykinin, des-arg(9))	    .24	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	12q13.3	12	56471554	GLS2	GLS2			27165			rs2657879-G	rs2657879	0	2657879	missense	0	0.187	3E-17	16.52287874528034	(glutamine + 7 other traits)	    .04	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	16p13.11	16	15036113	PDXDC1	PDXDC1			23042			rs7200543-G	rs7200543	0	7200543	cds-synon	0	0.304	5E-16	15.30102999566398	(SM-15 + 12 other traits)	    .07	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	5q31.1	5	132329685	SLC22A4	SLC22A4;LOC553103			6583;553103			rs272889-A	rs272889	0	272889	intron;intron	0	0.37	7E-16	15.15490195998574	(isovalerylcarnitine + 7 other traits)	    .08	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	7p21.1	7	17269655	AHR	RAD17P1 - AHR	9207	196		      403.29	       29.00	rs12670403-C	rs12670403	0	12670403	Intergenic	1	0.487	5E-15	14.30102999566398	(caffeine/quinate + 3 other traits)	    .29	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4q32.1	4	158709665	ETFDH	PPID			5481			rs8396-C	rs8396	0	8396	UTR-3	0	0.304	6E-15	14.22184874961635	(decanoylcarnitine + 25 other traits)	    .10	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6p24.2	6	11042676	ELOVL2	ELOVL2;ELOVL2-AS1			54898;100506409			rs9393903-A	rs9393903	0	9393903	intron;nearGene-5	0	0.242	2E-14	13.69897000433602	(SM-16 + 7 other traits)	    .06	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	10q21.2	10	59689806	SLC16A9	SLC16A9			220963			rs7094971-G	rs7094971	0	7094971	intron	0	0.147	3E-14	13.52287874528034	(carnitine)	    .05	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	15q15.1	15	40407823	IVD	IVD			3712			rs10518693-T	rs10518693	0	10518693	intron	0	0.396	1E-13	13	(SM-17 + 8 other traits)	    .09	[NR] unit increase	Affmyetrix & Illumina [534,665] 	N
02/24/2012	21886157	Suhre K	08/31/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21886157	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	6q21	6	111425880	SLC16A10	REV3L			5980			rs7760535-G	rs7760535	0	7760535	intron	0	0.401	1E-12	12	(isoleucine/tyrosine + 10 other traits)	    .04	[NR] unit decrease	Affmyetrix & Illumina [534,665] 	N
09/30/2011	21876539	Amin N	08/30/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21876539	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	15q24.1	15	74727108	CYP1A1, CYP1A2	CYP1A1			1543			rs2470893-T	rs2470893	0	2470893	nearGene-5	0	NR	2E-11	10.69897000433602		    .07	[0.05-0.09] unit increase	Affymetrix, Illumina & Perlgen [~2.6 million] (imputed)	N
09/30/2011	21876539	Amin N	08/30/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21876539	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	15q24.1	15	74833304	CPLX3, ULK3	CPLX3 - ULK3	594855	25989		        1.51	        2.81	rs6495122-A	rs6495122	0	6495122	Intergenic	1	NR	7E-9	8.154901959985743		    .05	[0.03-0.07] unit decrease	Affymetrix, Illumina & Perlgen [~2.6 million] (imputed)	N
09/30/2011	21876539	Amin N	08/30/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21876539	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	8q22.3	8	102040149	NCALD	NCALD			83988			rs16868941-A	rs16868941	0	16868941	intron	0	NR	8E-7	6.096910013008056		    .06	[0.04-0.08] unit increase	Affymetrix, Illumina & Perlgen [~2.6 million] (imputed)	N
09/30/2011	21876539	Amin N	08/30/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21876539	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	7q31.1	7	108141755	LAMB4, NRCAM	LAMB4 - NRCAM	22798	4897		       11.40	        5.87	rs382140-A	rs382140	0	382140	Intergenic	1	NR	4E-9	8.397940008672036		    .08	[0.05-0.11] unit increase	Affymetrix, Illumina & Perlgen [~2.6 million] (imputed)	N
09/28/2011	21878437	Mondul AM	08/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21878437	Genome-wide association study of circulating retinol levels.	Retinol levels	5,006 European ancestry individuals	1,124 European ancestry individuals, 3,764 Other ancestry individuals	10q23.33	10	93588425	RBP4	FFAR4			338557			rs10882272-C	rs10882272	0	10882272	UTR-3	0	0.35	7E-15	14.15490195998574		    .03	[0.02-0.04] ug/L decrease	Illumina [562,105]	N
09/28/2011	21878437	Mondul AM	08/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21878437	Genome-wide association study of circulating retinol levels.	Retinol levels	5,006 European ancestry individuals	1,124 European ancestry individuals, 3,764 Other ancestry individuals	18q12.1	18	31607316	TTR	TTR - B4GALT6	7276	9331		        8.29	       14.93	rs1667255-C	rs1667255	0	1667255	Intergenic	1	0.31	6E-14	13.22184874961636		    .03	[0.02-0.04] ug/L increase	Illumina [562,105]	N
09/28/2011	21878436	Sampietro ML	08/30/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21878436	A genome-wide association study identifies a region at chromosome 12 as a potential susceptibility locus for restenosis after percutaneous coronary intervention.	Coronary restenosis	295 European ancestry cases, 571 European ancestry controls	455 European ancestry cases, 2,880 European ancestry controls	12q23.3	12	103518728	C12orf42, STAB2, NT5DC3	C12orf42 - STAB2	374470	55576		       22.72	       68.56	rs10861032-C	rs10861032	0	10861032	Intergenic	1	NR	1E-7	7		NR	NR	Illumina [556,099]	N
09/28/2011	21874001	Kooner JS	08/28/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21874001	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	2q24.3	2	164645339	GRB14	EIF3EP3 - COBLL1	100462836	22837		       71.32	       34.85	rs3923113-A	rs3923113	0	3923113	Intergenic	1	0.74	1E-8	8		   1.09	[1.06-1.13] 	Illumina [568,976]	N
09/28/2011	21874001	Kooner JS	08/28/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21874001	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	3q27.3	3	186948673	ST6GAL1	ST6GAL1			6480			rs16861329-G	rs16861329	0	16861329	intron	0	0.75	3E-8	7.522878745280337		   1.09	[1.06-1.12] 	Illumina [568,976]	N
09/28/2011	21874001	Kooner JS	08/28/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21874001	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	10q22.1	10	69171718	VPS26A	VPS26A			9559			rs1802295-A	rs1802295	0	1802295	UTR-3	0	0.26	4E-8	7.397940008672037		   1.08	[1.05-1.12] 	Illumina [568,976]	N
09/28/2011	21874001	Kooner JS	08/28/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21874001	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	15q24.3	15	77454848	HMG20A	HMG20A			10363			rs7178572-G	rs7178572	0	7178572	intron	0	0.52	7E-11	10.15490195998574		   1.09	[1.06-1.12] 	Illumina [568,976]	N
09/28/2011	21874001	Kooner JS	08/28/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21874001	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	15q26.1	15	89831025	AP3S2	AP3S2;C15orf38-AP3S2			10239;100526783			rs2028299-C	rs2028299	0	2028299	ncRNA;UTR-3	0	0.31	2E-11	10.69897000433602		   1.10	[1.07-1.13] 	Illumina [568,976]	N
09/28/2011	21874001	Kooner JS	08/28/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21874001	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	20q13.12	20	44360627	HNF4A	HNF4A			3172			rs4812829-A	rs4812829	0	4812829	intron	0	0.29	3E-10	9.522878745280336		   1.09	[1.06-1.12] 	Illumina [568,976]	N
09/27/2011	21876473	Lydall GJ	08/26/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21876473	Confirmation of prior evidence of genetic susceptibility to alcoholism in a genome-wide association study of comorbid alcoholism and bipolar disorder.	Alcohol dependence	506 European ancestry cases, 510 European ancestry controls	NA	16p12.3	16	19144694	SYT17	ITPRIPL2 - SYT17	162073	51760		       23.06	       23.53	rs8062326-T	rs8062326	0	8062326	Intergenic	1	0.02	4E-6	5.397940008672037	(BPALC)	NR	NR	Affymetrix [372,193]	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	11q13.4	11	72721940	ARAP1	ARAP1			116985			rs11603334-A	rs11603334	0	11603334	intron	0	0.15	3E-102	101.5228787452803		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	11p11.2	11	47272248	MADD	MADD			8567			rs10501320-G	rs10501320	0	10501320	intron	0	0.72	1E-88	88		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	5q15	5	96393194	PCSK1	PCSK1;CTD-2337A12.1			5122;101929710			rs6235-G	rs6235	0	6235	missense;intron	0	0.28	1E-26	26		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.30	2E-20	19.69897000433602		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	15q22.2	15	62090956	VPS13C, C2CD4A, C2CD4B	NPM1P47 - C2CD4B	100129972	388125		        7.65	       72.58	rs4502156-T	rs4502156	0	4502156	Intergenic	1	0.58	4E-20	19.39794000867203		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	8q24.11	8	117173494	SLC30A8	SLC30A8			169026			rs11558471-A	rs11558471	0	11558471	UTR-3	0	0.69	3E-18	17.52287874528034		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	15q23	15	70816808	LARP6	RPL29P30 - LARP6	729611	55323		       19.66	       14.72	rs1549318-T	rs1549318	0	1549318	Intergenic	1	0.61	2E-10	9.698970004336017		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	17p13.3	17	2359409	SGSM2	SGSM2			9905			rs4790333-T	rs4790333	0	4790333	intron	0	0.45	3E-9	8.522878745280337		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	1p21.3	1	98711697	SNX7	SNX7			51375			rs9727115-G	rs9727115	0	9727115	intron	0	0.64	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21873549	Strawbridge RJ	08/26/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21873549	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	11p11.2	11	47291341	MADD	MADD			8567			rs10838687-T	rs10838687	0	10838687	intron	0	0.80	7E-12	11.15490195998574		NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/27/2011	21866343	Ahn MJ	08/25/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21866343	The 18p11.22 locus is associated with never smoker non-small cell lung cancer susceptibility in Korean populations.	Non-small cell lung cancer	445 Korean ancestry cases, 497 Korean ancestry controls	396 Korean ancestry cases, 998 Korean ancestry controls	18p11.22	18	10899030	APCDD1, NAPG, FAM38B	PIEZO2			63895			rs11080466-C	rs11080466	0	11080466	intron	0	NR	1E-6	5.999999999999999		   1.47	[1.27-1.72] 	Affymetrix [474,503]	N
09/23/2011	21871595	Day-Williams AG	08/25/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21871595	A variant in MCF2L is associated with osteoarthritis.	Osteoarthritis	3,177 European ancestry cases, 4,894 European ancestry controls	15,864 European ancestry cases, 19,610 European ancestry controls	13q34	13	113040195	MCF2L	MCF2L			23263			rs11842874-A	rs11842874	0	11842874	intron	0	0.07	2E-8	7.698970004336018		   1.17	[1.11-1.23] 	NR [7,258,070] (imputed)	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	15q12	15	26043247	ATP10A	LOC100128714			100128714			rs6576507-A	rs6576507	0	6576507	intron	0	0.13	4E-7	6.397940008672037	(Insulin)	  14.00	[8.00-20.00] % increase	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	5q14.1	5	77996116	AP3B1	ACTBP2 - AP3B1	62	8546		      209.52	        6.21	rs12655917-C	rs12655917	0	12655917	Intergenic	1	0.01	6E-7	6.221848749616355	(Insulin)	  40.00	[27 - 51] % decrease	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	21q22.3	21	45704264	PCBP3	SLC19A1 - PCBP3	6573	54039		      161.79	      145.70	rs4819143-C	rs4819143	0	4819143	Intergenic	1	0.06	1E-6	5.999999999999999	(Insulin)	  17.00	[10.00 - 23.00] % decrease	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	12q24.31	12	120442631	TRIAP1	COX6A1 - TRIAP1	1337	51499		        1.89	        1.33	rs17431357-C	rs17431357	0	17431357	Intergenic	1	0.01	1E-6	5.999999999999999	(Insulin)	  34.00	[22.00 - 44.00] % decrease	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	8p11.23	8	37094396	KCNU1	RPL26P25 - SMARCE1P4	100270966	642879		      105.90	         .70	rs2407103-C	rs2407103	0	2407103	Intergenic	1	0.09	2E-6	5.698970004336018	(Insulin)	  15.00	[9.00 - 23.00] % increase	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	3p21.1	3	53646097	CACNA1D	CACNA1D			776			rs1401492-C	rs1401492	0	1401492	intron	0	0.07	3E-6	5.522878745280337	(Insulin)	  15.00	[9.00 - 21.00] % decrease	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	22q12.1	22	26301229	SEZ6L	SEZ6L			23544			rs591044-A	rs591044	0	591044	intron	0	0.37	6E-6	5.221848749616356	(Insulin)	   9.00	[5.00 - 13.00] % increase	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	9q21.32	9	82521000	Intergenic	RPS2P34 - RPS6P12	442426	100270867		      389.33	      223.06	rs7043482-G	rs7043482	0	7043482	Intergenic	1	0.19	3E-6	5.522878745280337	(HOMA-IR)	  12.00	[7.00 - 18.00] % increase	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	6p21.2	6	38068644	ZFAND3	ZFAND3			60685			rs17589516-C	rs17589516	0	17589516	intron	0	0.02	4E-6	5.397940008672037	(HOMA-IR)	  45.00	[24.00 - 69.00] % increase	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	9q21.33	9	86958168	GAS1	LOC100506834			100506834			rs9792548-C	rs9792548	0	9792548	intron	0	0.15	4E-6	5.397940008672037	(HOMA-IR)	  12.00	[7.00 - 16.00] % decrease	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	3p21.1	3	53646097	CACNA1D	CACNA1D			776			rs1401492-C	rs1401492	0	1401492	intron	0	0.07	5E-6	5.301029995663981	(HOMA-IR)	  16.00	[9.00 - 22.00] % decrease	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	13q33.1	13	103534569	Intergenic	ATP6V1G1P7 - RPL7P45	100874514	100271225		       89.00	     1279.74	rs16962638-C	rs16962638	0	16962638	Intergenic	1	0.11	6E-6	5.221848749616356	(HOMA-IR)	  15.00	[8.00 - 22.00] % increase	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	15q12	15	26043247	ATP10A	LOC100128714			100128714			rs6576507-A	rs6576507	0	6576507	intron	0	0.13	7E-6	5.154901959985742	(HOMA-IR)	  13.00	[7.00 - 20.00] % increase	Affymetrix [872,243]	N
09/27/2011	21901158	Irvin MR	08/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21901158	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	8p23.2	8	4220831	CSMD1	CSMD1			64478			rs2407314-C	rs2407314	0	2407314	intron	0	0.47	8E-6	5.096910013008055	(HOMA-IR)	   9.00	[5.00 - 12.00] % decrease	Affymetrix [872,243]	N
09/22/2011	21862451	Benyamin B	08/23/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21862451	GWAS of butyrylcholinesterase activity identifies four novel loci, independent effects within BCHE and secondary associations with metabolic risk factors.	Butyrylcholinesterase levels	6,879 European ancestry adults	1,260 European ancestry adults, 652 European ancestry adolescents	3q26.1	3	165773492	BCHE	BCHE			590			rs1803274-T	rs1803274	0	1803274	missense	0	0.21	6E-262	261.2218487496164		    .71	[0.67-0.75] SD decrease	Illumina [2,383,238] (imputed)	N
09/22/2011	21862451	Benyamin B	08/23/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21862451	GWAS of butyrylcholinesterase activity identifies four novel loci, independent effects within BCHE and secondary associations with metabolic risk factors.	Butyrylcholinesterase levels	6,879 European ancestry adults	1,260 European ancestry adults, 652 European ancestry adolescents	1q32.1	1	201983446	RNPEP	RNPEP			6051			rs4950806-T	rs4950806	0	4950806	intron	0	0.40	9E-16	15.04575749056067		    .14	[0.10-0.18] SD decrease	Illumina [2,383,238] (imputed)	N
09/22/2011	21862451	Benyamin B	08/23/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21862451	GWAS of butyrylcholinesterase activity identifies four novel loci, independent effects within BCHE and secondary associations with metabolic risk factors.	Butyrylcholinesterase levels	6,879 European ancestry adults	1,260 European ancestry adults, 652 European ancestry adolescents	2q33.2	2	203384676	ABI2	ABI2			10152			rs11675251-A	rs11675251	0	11675251	intron	0	0.45	4E-18	17.39794000867204		    .15	[0.12-0.18] SD decrease	Illumina [2,383,238] (imputed)	N
05/17/2013	21886828	Wei W	08/19/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21886828	Characterisation of genome-wide association epistasis signals for serum uric acid in human population isolates.	Uric acid levels	1,201 European ancestry individuals	4,641 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [293913]	N
09/21/2011	21876681	Hamza TH	08/18/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21876681	Genome-wide gene-environment study identifies glutamate receptor gene GRIN2A as a Parkinson's disease modifier gene via interaction with coffee.	Parkinson's disease (interaction with coffee consumption)	1,458 European ancestry cases, 931 European ancestry controls	1,014 European ancestry cases, 1,917 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [811,597]	N
09/17/2011	21845381	Florez JC	08/16/2011	Curr Diab Rep	http://www.ncbi.nlm.nih.gov/pubmed/21845381	Does metformin work for everyone? A genome-wide association study for metformin response.	Response to metformin	1,014 European ancestry individuals, 10 individuals	2,896 European ancestry individuals	11q22.3	11	108412434	ATM	C11orf65			160140			rs11212617-A	rs11212617	0	11212617	intron	0	0.44	3E-9	8.522878745280337		NR	NR	Affymetrix [705,125]	N
09/17/2011	21844665	Hu HJ	08/16/2011	Exp Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/21844665	Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.	Rheumatoid arthritis	100 Korean ancestry cases, 600 Korean ancestry controls	578 Korean ancestry cases, 711 Korean ancestry controls	6p21.33	6	31654829	APOM	BAG6;APOM			7917;55937			rs805297-A	rs805297	0	805297	intron;intron	0	0.36	3E-10	9.522878745280336		   1.56	[1.36-1.80] 	Affymetrix [300,909]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	1q23.1	1	157699488	FCRL3	FCRL3			115352			rs3761959-A	rs3761959	0	3761959	intron	0	0.40	2E-13	12.69897000433602		   1.23	[1.17-1.30] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	2q33.2	2	203857029	CD28, CTLA4	NPM1P33 - CTLA4	100131478	1493		       83.53	       10.76	rs1024161-T	rs1024161	0	1024161	Intergenic	1	0.69	2E-17	16.69897000433602		   1.30	[1.23-1.38] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	4p14	4	40301616	RHOH, CHRNA9	LOC101930098			101930098			rs6832151-G	rs6832151	0	6832151	intron	0	0.35	1E-13	13		   1.24	[1.17-1.31] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	6	31090401	MUC21, C6orf15	TRNAI25			100189401			rs4947296-C	rs4947296	0	4947296		0	0.14	4E-51	50.39794000867204		   1.77	[1.65-1.91] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.33	6	31382927	HLA-B	TRNAI25			100189401			rs1521-T	rs1521	0	1521		0	0.79	2E-65	64.69897000433602		   1.92	[1.78-2.08] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	6	32696074	HLA, DRB1, DQA1, DQB1	TRNAI25			100189401			rs6457617-T	rs6457617	0	6457617		0	0.45	7E-33	32.15490195998574		   1.40	[1.32-1.48] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6p21.32	6	33092341	HLA, DPB1	TRNAI25			100189401			rs2281388-T	rs2281388	0	2281388		0	0.32	2E-65	64.69897000433602		   1.64	[1.55-1.74] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6q15	6	90212021	BACH2, MAP3K7	BACH2			60468			rs370409-T	rs370409	0	370409	intron	0	0.67	2E-6	5.698970004336018		   1.15	[1.09-1.22] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	6q27	6	166969587	RNASET2, FGFR1OP	RNASET2 - MIR3939	8635	100500857		       13.00	       28.22	rs9355610-G	rs9355610	0	9355610	Intergenic	1	0.47	7E-10	9.154901959985741		   1.19	[1.13-1.26] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	9q34.2	9	133273813	ABO	ABO			28			rs505922-T	rs505922	0	505922	intron	0	0.53	8E-6	5.096910013008055		   1.13	[1.07-1.20] 	Illumina [486,049]	N
09/21/2011	21841780	Chu X	08/14/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21841780	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	14q31.1	14	80984885	TSHR	TSHR			7253			rs12101261-T	rs12101261	0	12101261	intron	0	0.64	7E-24	23.15490195998574		   1.35	[1.28-1.43] 	Illumina [486,049]	N
09/23/2011	21835309	Larsson M	08/12/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21835309	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adults	2p13.1	2	74744954	AC007387.1	LOC102724497			102724497			rs205611-A	rs205611	0	205611	intron	0	NR	1E-6	5.999999999999999	(Crypts)	    .12	[0.06-0.18] unit decrease	Illumina [274,604] (imputed)	N
09/23/2011	21835309	Larsson M	08/12/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21835309	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adults	7q21.11	7	84027484	SEMA3A	SEMA3A			10371			rs10235789-C	rs10235789	0	10235789	intron	0	NR	7E-11	10.15490195998574	(Crypts)	    .12	[0.08-0.16] unit increase	Illumina [274,604] (imputed)	N
09/23/2011	21835309	Larsson M	08/12/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21835309	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adults	7q21.11	7	84027484	SEMA3A	SEMA3A			10371			rs10235789-C	rs10235789	0	10235789	intron	0	NR	3E-6	5.522878745280337	(Furrows)	    .09	[0.05-0.13] unit decrease	Illumina [274,604] (imputed)	N
09/23/2011	21835309	Larsson M	08/12/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21835309	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adults	2q37.3	2	238397627	TRAF3IP1	TRAF3IP1			26146			rs3739070-A	rs3739070	0	3739070	missense	0	NR	6E-6	5.221848749616356	(Crypts)	    .16	[0.10-0.22] unit decrease	Illumina [274,604] (imputed)	N
09/23/2011	21835309	Larsson M	08/12/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21835309	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adults	2q37.3	2	238397627	TRAF3IP1	TRAF3IP1			26146			rs3739070-A	rs3739070	0	3739070	missense	0	NR	2E-12	11.69897000433602	(Furrows)	    .25	[0.19-0.31] unit increase	Illumina [274,604] (imputed)	N
09/23/2011	21835309	Larsson M	08/12/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21835309	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adults	14q32.12	14	92297047	SLC324A4	CPSF2 - SLC24A4	53981	123041		      132.85	       25.53	rs4900109-G	rs4900109	0	4900109	Intergenic	1	NR	8E-21	20.09691001300805	(Pigmented Ring)	    .17	[0.13-0.21] unit increase	Illumina [274,604] (imputed)	N
09/23/2011	21835309	Larsson M	08/12/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21835309	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adults	15q22.31	15	63623587	HERC1	HERC1			8925			rs11630290-C	rs11630290	0	11630290	intron	0	NR	1E-6	5.999999999999999	(Iris Nevi)	    .09	[0.05-0.13] unit increase	Illumina [274,604] (imputed)	N
10/29/2011	21836138	Hadchouel A	08/11/2011	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/21836138	Identification of SPOCK2 as a susceptibility gene for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	22 European ancestry cases, 76 European ancestry controls, 21 African ancestry  cases, 86 African ancestry controls	84 European ancestry cases, 267 European ancestry controls, 15 African ancestry cases, 32 African ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to 660,918] (pooled)	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	12q14.1	12	57739473	AGAP2, CYP27B1	AGAP2			116986			rs12368653-A	rs12368653	0	12368653	intron	0	NR	2E-9	8.698970004336019	(Conditioned on rs7238078)	   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	6	135418217	AHI1	AHI1			54806			rs11154801-A	rs11154801	0	11154801	intron	0	NR	1E-13	13		   1.13	[1.11-1.15] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	18q21.32	18	58546158	ALPK2	ALPK2			115701			rs12456021-A	rs12456021	0	12456021	intron	0	NR	4E-6	5.397940008672037		   1.10	[1.08-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q15	6	90287050	BACH2	BACH2			60468			rs12212193-G	rs12212193	0	12212193	intron	0	NR	4E-8	7.397940008672037		   1.09	[1.08-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	14q24.3	14	75539214	BATF	BATF			10538			rs2300603-A	rs2300603	0	2300603	intron	0	NR	2E-8	7.698970004336018		   1.11	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1q32.1	1	200912467	C1orf106, KIF21B	C1orf106			55765			rs7522462-G	rs7522462	0	7522462	intron	0	NR	2E-9	8.698970004336019		   1.11	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	3	119501087	C3orf1, TMEM39A	TIMMDC1			51300			rs2293370-G	rs2293370	0	2293370	intron	0	NR	3E-9	8.522878745280337		   1.13	[1.11-1.15] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	11q12.2	11	61064810	CD5, CD6	TRNAA45P - CD5	100189469	921		       68.71	       37.65	rs650258-G	rs650258	0	650258	Intergenic	1	NR	2E-11	10.69897000433602		   1.12	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p13.1	1	116558335	CD58	CD58			965			rs1335532-A	rs1335532	0	1335532	intron	0	NR	3E-16	15.52287874528034		   1.22	[1.19-1.24] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	3	122077921	CD86	CD86			942			rs9282641-G	rs9282641	0	9282641	missense	0	NR	1E-11	11		   1.21	[1.18-1.24] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19p13.2	19	10409388	CDC37, TYK2	MIR1181 - PDE4A	100302213	5141		        5.85	        7.39	rs8112449-G	rs8112449	0	8112449	Intergenic	1	NR	1E-6	5.999999999999999		   1.08	[1.07-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	7p22.3	7	2408858	CHST12	CHST12			55501			rs6952809-A	rs6952809	0	6952809	intron	0	NR	4E-6	5.397940008672037	(Conditioned on rs1843938)	   1.08	[1.06-1.09] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16p13.13	16	11083944	CLEC16A	CLEC16A			23274			rs7200786-A	rs7200786	0	7200786	intron	0	NR	9E-17	16.04575749056067		   1.15	[1.13-1.16] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	12p13.31	12	9723495	CLECL1	CLECL1			160365			rs10466829-A	rs10466829	0	10466829	intron	0	NR	1E-8	8		   1.09	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	11q23.3	11	118883644	CXCR5	CXCR5			643			rs630923-C	rs630923	0	630923	nearGene-5	0	NR	3E-7	6.522878745280337		   1.12	[1.1-1.14] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	20q13.2	20	54174979	CYP24A1	CYP24A1			1591			rs2248359-G	rs2248359	0	2248359	nearGene-5	0	NR	3E-11	10.52287874528034		   1.12	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p22.3	1	85306326	DDAH1	BCL10 - DDAH1	8915	23576		       29.41	       12.16	rs233100-G	rs233100	0	233100	Intergenic	1	NR	1E-6	5.999999999999999		   1.08	[1.07-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.33	19	49365794	DKKL1	DKKL1			27120			rs2303759-C	rs2303759	0	2303759	missense	0	NR	5E-9	8.301029995663981		   1.11	[1.09-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	13q14.2	13	50267187	DLEU1	DLEU1			10301			rs806321-A	rs806321	0	806321	intron	0	NR	5E-7	6.30102999566398		   1.08	[1.07-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3p24.1	3	27747289	EOMES	EOMES - CMC1	8320	152100		       24.57	      494.06	rs11129295-A	rs11129295	0	11129295	Intergenic	1	NR	1E-9	8.999999999999998	(Conditioned on rs669607)	   1.11	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p22.1	1	92682820	EVI5	EVI5			7813			rs11810217-A	rs11810217	0	11810217	intron	0	NR	6E-15	14.22184874961635		   1.15	[1.13-1.16] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p21.2	1	100865980	EXTL2	VCAM1 - EXTL2	7412	2135		      126.94	        6.39	rs12048904-A	rs12048904	0	12048904	Intergenic	1	NR	4E-8	7.397940008672037		   1.09	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1q23.1	1	157699488	FCRL3	FCRL3			115352			rs3761959-G	rs3761959	0	3761959	intron	0	NR	3E-6	5.522878745280337		   1.08	[1.06-1.09] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	14q31.3	14	88021345	GPR65	LOC101928791			101928791			rs2119704-C	rs2119704	0	2119704	intron	0	NR	2E-10	9.698970004336017		   1.22	[1.19-1.25] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10q23.33	10	92722160	HHEX	HHEX - EXOC6	3087	54536		       26.51	      104.67	rs7923837-G	rs7923837	0	7923837	Intergenic	1	NR	5E-9	8.301029995663981		   1.10	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q25.33	3	159991864	IL12A	IL12A;IL12A-AS1			3592;101928376			rs2243123-G	rs2243123	0	2243123	intron;intron	0	NR	7E-6	5.154901959985742		   1.08	[1.06-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q33.3	5	159332892	IL12B	LOC285626			285626			rs2546890-A	rs2546890	0	2546890	ncRNA	0	NR	1E-11	11		   1.11	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	6	137131771	IL22RA2	IL20RA - IL22RA2	53832	116379		       86.59	       12.05	rs17066096-G	rs17066096	0	17066096	Intergenic	1	NR	6E-13	12.22184874961636		   1.14	[1.12-1.15] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10p15.1	10	6068866	IL2RA	IL2RA - RPL32P23	3559	644020		        6.50	        2.65	rs7090512-G	rs7090512	0	7090512	Intergenic	1	NR	5E-20	19.30102999566398	(Conditioned on rs3118470)	   1.19	[1.17-1.21] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5p13.2	5	35874473	IL7R	IL7R			3575			rs6897932-G	rs6897932	0	6897932	missense	0	NR	2E-8	7.698970004336018		   1.11	[1.09-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16q24.1	16	85977427	IRF8	MIR6774 - LINC01082	102466732	100506542		       59.01	      218.75	rs13333054-A	rs13333054	0	13333054	Intergenic	1	NR	1E-8	8		   1.11	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	13q14.11	13	41565109	KIAA0564	RGCC - VWA8	28984	23078		       94.23	        1.72	rs17594362-A	rs17594362	0	17594362	Intergenic	1	NR	4E-6	5.397940008672037		   1.11	[1.09-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16q23.2	16	79618644	MAF	MAF - DYNLRB2	4094	83657		       17.92	      922.31	rs386965-G	rs386965	0	386965	Intergenic	1	NR	4E-6	5.397940008672037		   1.09	[1.07-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	18q21.32	18	58716960	MALT1	MALT1			10892			rs7238078-A	rs7238078	0	7238078	intron	0	NR	3E-9	8.522878745280337		   1.12	[1.1-1.14] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.33	19	48711213	MAMSTR	FUT2 - MAMSTR	2524	284358		        5.28	        1.53	rs281380-G	rs281380	0	281380	Intergenic	1	NR	2E-6	5.698970004336018	(Conditioned on rs2303759)	   1.08	[1.07-1.09] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	4q24	4	102657480	MANBA, NFKB1	MANBA			4126			rs228614-G	rs228614	0	228614	intron	0	NR	1E-7	7		   1.09	[1.07-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	17q21.31	17	45325639	MAP3K14	MAP3K14 - ARHGAP27	9020	201176		        8.59	       68.26	rs4792814-G	rs4792814	0	4792814	Intergenic	1	NR	3E-6	5.522878745280337		   1.08	[1.06-1.09] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	22q11.21	22	21776836	MAPK1	MAPK1			5594			rs2283792-C	rs2283792	0	2283792	intron	0	NR	5E-9	8.301029995663981		   1.10	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2q13	2	111907624	MERTK	MERTK			10461			rs17174870-G	rs17174870	0	17174870	intron	0	NR	1E-8	8		   1.11	[1.09-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p36.32	1	2792599	MMEL1	TTC34 - ACTRT2	100287898	140625		        2.93	      228.88	rs4648356-C	rs4648356	0	4648356	Intergenic	1	NR	1E-14	14		   1.14	[1.12-1.16] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19p13.11	19	18193890	MPV17L2	MPV17L2			84769			rs874628-A	rs874628	0	874628	missense	0	NR	1E-8	8		   1.11	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	6	135173737	MYB	MIR3662 - MYB	100500880	4602		      194.31	        7.58	rs9321490-G	rs9321490	0	9321490	Intergenic	1	NR	2E-6	5.698970004336018	(Conditioned on rs11154801)	   1.10	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	8q24.21	8	127802783	MYC	MIR1204 - PVT1	100302185	5820		        6.76	       87.85	rs4410871-G	rs4410871	0	4410871	Intergenic	1	NR	8E-9	8.096910013008056		   1.11	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q26.2	3	169774313	MYNN	MYNN			55892			rs10936599-G	rs10936599	0	10936599	cds-synon	0	NR	7E-7	6.154901959985743		   1.10	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2p21	2	43131922	Intergenic	TRNAI13 - ZFP36L2	100189265	678		      321.29	       90.48	rs12466022-C	rs12466022	0	12466022	Intergenic	1	NR	6E-10	9.221848749616356		   1.11	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3p24.1	3	28029953	Intergenic	EOMES - CMC1	8320	152100		      307.24	      211.39	rs669607-C	rs669607	0	669607	Intergenic	1	NR	2E-15	14.69897000433602		   1.13	[1.12-1.15] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q23.3	6	137646077	OLIG3	BTF3L4P3 - TNFAIP3	391040	7128		      101.63	      221.11	rs13192841-A	rs13192841	0	13192841	Intergenic	1	NR	1E-8	8	(Conditioned on rs17066096)	   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	11q21	11	95578258	Intergenic	SESN3 - FGFR3P2	143686	100462815		      345.72	      178.70	rs4409785-G	rs4409785	0	4409785	Intergenic	1	NR	6E-7	6.221848749616355		   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	20q13.12	20	46073481	NCOA5, CD40	NCOA5			57727			rs2425752-A	rs2425752	0	2425752	intron	0	NR	5E-10	9.301029995663981		   1.11	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q31.3	5	142143435	NDFIP1	NDFIP1			80762			rs1062158-A	rs1062158	0	1062158	intron	0	NR	2E-6	5.698970004336018		   1.08	[1.07-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q12.3	3	102029794	NFKBIZ	NFKBIZ - ZPLD1	64332	131368		      168.77	      180.18	rs771767-A	rs771767	0	771767	Intergenic	1	NR	9E-9	8.045757490560675		   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	22q13.33	22	50532837	ODF3B, SCO2	ODF3B			440836			rs140522-A	rs140522	0	140522	nearGene-5	0	NR	2E-8	7.698970004336018		   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	8q21.12	8	78488803	PKIA, IL7	HIGD1AP18 - PKIA	100874456	5569		     1474.75	       27.30	rs1520333-G	rs1520333	0	1520333	Intergenic	1	NR	2E-7	6.698970004336019		   1.10	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3p24.3	3	16929446	PLCL2	PLCL2			23228			rs9821630-G	rs9821630	0	9821630	intron	0	NR	4E-6	5.397940008672037		   1.08	[1.07-1.1] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2p13.3	2	68419963	PLEK	PLEK - FBXO48	5341	554251		       22.51	       42.40	rs7595037-A	rs7595037	0	7595037	Intergenic	1	NR	5E-11	10.30102999566398		   1.11	[1.1-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5p13.1	5	40392626	PTGER4	LINC00603 - PTGER4	102467077	5734		      339.30	      287.30	rs4613763-G	rs4613763	0	4613763	Intergenic	1	NR	3E-16	15.52287874528034		   1.20	[1.18-1.22] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q22.33	6	127957653	PTPRK, THEMIS	MRPS17P5 - PTPRK	359758	5796		       47.64	       11.13	rs802734-A	rs802734	0	802734	Intergenic	1	NR	6E-9	8.221848749616356		   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.31	19	44642803	PVR	PVR			5817			rs7255066-G	rs7255066	0	7255066	nearGene-5	0	NR	1E-6	5.999999999999999		   1.09	[1.07-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	8q24.21	8	128180025	PVT1	MIR1208 - LINC01263	100302281	101927774		       29.84	      225.24	rs2019960-G	rs2019960	0	2019960	Intergenic	1	NR	5E-9	8.301029995663981	(Conditioned on rs4410871)	   1.12	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1q31.2	1	192571891	RGS1	RGS21 - RGS1	431704	5996		      204.61	        3.84	rs1323292-A	rs1323292	0	1323292	Intergenic	1	NR	2E-8	7.698970004336018		   1.12	[1.1-1.14] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q35.3	5	177357511	RGS14	RGS14			10636			rs4075958-A	rs4075958	0	4075958	nearGene-5	0	NR	5E-7	6.30102999566398		   1.09	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	17q23.1	17	59946914	RPS6KB1	RPS6KB1			6198			rs180515-G	rs180515	0	180515	intron	0	NR	9E-8	7.045757490560674		   1.09	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6p24.3	6	7118757	RREB1	RREB1			6239			rs11755724-A	rs11755724	0	11755724	intron	0	NR	3E-6	5.522878745280337		   1.08	[1.06-1.09] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.32	19	47158236	SAE1	SAE1			10055			rs307896-G	rs307896	0	307896	intron	0	NR	5E-7	6.30102999566398		   1.09	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p21.2	1	100941963	SLC30A7, VCAM1	SLC30A7			148867			rs11581062-G	rs11581062	0	11581062	intron	0	NR	3E-10	9.522878745280336		   1.12	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16p13.3	16	1023552	SOX8	SOX8 - SSTR5-AS1	30812	146336		       36.57	       40.53	rs2744148-G	rs2744148	0	2744148	Intergenic	1	NR	8E-8	7.096910013008055		   1.12	[1.1-1.14] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2q37.1	2	230242009	SP140	SP140			11262			rs10201872-A	rs10201872	0	10201872	intron	0	NR	2E-10	9.698970004336017		   1.14	[1.12-1.16] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	17q21.2	17	42355962	STAT3	STAT3			6774			rs9891119-C	rs9891119	0	9891119	intron	0	NR	2E-10	9.698970004336017		   1.11	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	9q22.2	9	90801254	SYK	SYK			6850			rs290986-A	rs290986	0	290986	nearGene-5	0	NR	9E-7	6.045757490560675		   1.10	[1.08-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	6q25.3	6	159044945	TAGAP	TAGAP			117289			rs1738074-G	rs1738074	0	1738074	UTR-5	0	NR	7E-15	14.15490195998574		   1.13	[1.12-1.15] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	5q31.1	5	134110884	TCF7	VDAC1 - TCF7	7416	6932		      105.50	        3.83	rs756699-A	rs756699	0	756699	Intergenic	1	NR	6E-7	6.221848749616355		   1.12	[1.1-1.14] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	12p13.31	12	6330843	TNFRSF1A	TNFRSF1A			7132			rs1800693-G	rs1800693	0	1800693	intron	0	NR	4E-14	13.39794000867204		   1.12	[1.11-1.14] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19p13.3	19	6668961	TNFSF14	TNFSF14			8740			rs1077667-G	rs1077667	0	1077667	intron	0	NR	9E-14	13.04575749056067		   1.16	[1.14-1.18] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	20q13.33	20	63778360	ZBTB46	ZBTB46			140685			rs6062314-A	rs6062314	0	6062314	intron	0	NR	1E-7	7		   1.16	[1.14-1.19] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	14q24.1	14	68787474	ZFP36L1	ZFP36L1			677			rs4902647-G	rs4902647	0	4902647	nearGene-3	0	NR	9E-12	11.04575749056067		   1.11	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10q22.3	10	79300560	ZMIZ1	ZMIZ1			57178			rs1250550-A	rs1250550	0	1250550	intron	0	NR	6E-9	8.221848749616356		   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10p11.22	10	31126177	ZNF438	DDX10P1 - RNA5SP309	100421371	100873583		      205.05	      133.42	rs793108-A	rs793108	0	793108	Intergenic	1	NR	3E-6	5.522878745280337		   1.08	[1.06-1.09] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	7q36.1	7	149592373	ZNF767, ZNF746	ZNF767P			79970			rs354033-G	rs354033	0	354033	intron	0	NR	5E-9	8.301029995663981		   1.11	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p21.2	1	100865980	EXTL2, VCAM1	VCAM1 - EXTL2	7412	2135		      126.94	        6.39	rs12048904-A	rs12048904	0	12048904	Intergenic	1	NR	4E-8	7.397940008672037	(Conditioned on rs11581062)	   1.09	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	3	121941817	SLC15A2, CD86	SLC15A2			6565			rs4285028-A	rs4285028	0	4285028	UTR-3	0	NR	2E-8	7.698970004336018	(Conditioned on rs9282641)	   1.10	[1.09-1.12] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	3	122074340	CD86	CD86			942			rs4308217-C	rs4308217	0	4308217	intron	0	NR	6E-8	7.221848749616355	(Conditioned on rs4285028, rs9282641)	   1.10	[1.08-1.11] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10p15.1	10	6059750	IL2RA	IL2RA			3559			rs3118470-G	rs3118470	0	3118470	intron	0	NR	3E-11	10.52287874528034		   1.12	[1.1-1.13] 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	NR			DRB1	 - 						DRB*15:01-?	DRB*15:01					NR	1E-132			   3.08	NR 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	NR			DRB1	 - 						DRB*13:03-?	DRB*13:03					NR	1E-11			   2.43	NR 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	NR			DRB1	 - 						DRB*03:01-?	DRB*03:01					NR	4E-10			   1.26	NR 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	NR			HLA	 - 						A*02:01-?	A*02:01					NR	9E-23			   1.37	NR 	Illumina [465,434]	N
10/24/2012	21833088	Sawcer S	08/11/2011	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21833088	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	NR			DRB1	 - 						DRB*08:01-?	DRB*08:01					NR	2E-7			   1.18	NR 	Illumina [465,434]	N
09/17/2011	21826061	Davies G	08/09/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21826061	Genome-wide association studies establish that human intelligence is highly heritable and polygenic.	Intelligence	3,511 European ancestry individuals	670 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [549,692]	N
09/16/2011	21826085	Tanaka S	08/09/2011	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/21826085	DPP6 as a candidate gene for neuroleptic-induced tardive dyskinesia.	Tardive dyskinesia 	61 Japanese ancestry schizophrenic cases, 61 Japanese ancestry cases schizophrenic controls	36 Japanese ancestry schizophrenic cases, 138 Japanese ancestry schizophrenic controls	7q36.2	7	154374935	DPP6	DPP6			1804			rs6977820-?	rs6977820	0	6977820	intron	0	NR	5E-6	5.301029995663981		   2.32	[1.61-3.34] 	Illumina [257,704]	N
09/21/2011	21827660	Yang TH	08/09/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21827660	Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk.	Glioma	781 European ancestry cases, 3,992 European ancestry controls	NA	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-?	rs2736100	0	2736100	intron	0	NR	7E-9	8.154901959985743		NR	NR	Illumina [489,781]	N
09/17/2011	21824976	Garcia-Closas M	08/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21824976	A genome-wide association study of bladder cancer identifies a new susceptibility locus within SLC14A1, a urea transporter gene on chromosome 18q12.3.	Bladder cancer	4,501 European ancestry cases, 6,076 European ancestry controls	1,382 European ancestry cases, 2,201 European ancestry controls	18q12.3	18	45737001	SLC14A1	SLC14A1			6563			rs7238033-?	rs7238033	0	7238033	intron	0	NR	9E-9	8.045757490560675		   1.20	[1.13-1.28] 	Illumina [555,912]	N
09/15/2011	21826682	Isackson PJ	08/08/2011	Muscle Nerve	http://www.ncbi.nlm.nih.gov/pubmed/21826682	Association of common variants in the human eyes shut ortholog (EYS) with statin-induced myopathy: evidence for additional functions of EYS.	Response to statin therapy	39 European ancestry severe statin myopathy cases, 40 European ancestry controls	67 European ancestry severe statin myopathy cases, 42 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [NR] (pooled)	N
09/08/2011	21829389	Barbalic M	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829389	Genome-wide association analysis of incident coronary heart disease (CHD) in African Americans: a short report.	Coronary heart disease	362 African American cases, 2,543 African American controls	862 African American female cases, 7,293 African American female controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	1q23.1	1	157701026	FCRL3	FCRL3			115352			rs7528684-T	rs7528684	0	7528684	nearGene-5	0	NR	1E-11	11	(I-A2A)	   1.52	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-A	rs2476601	0	2476601	missense;intron	0	NR	2E-111	110.698970004336	(T1D)	   2.00	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	1q32.1	1	206766559	IL10	RPS14P1 - IL10	100271063	3586		       70.26	        1.04	rs3024505-G	rs3024505	0	3024505	Intergenic	1	NR	5E-10	9.301029995663981	(T1D)	   1.20	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	2q24.2	2	162267541	IFIH1	IFIH1			64135			rs1990760-C	rs1990760	0	1990760	missense	0	NR	2E-14	13.69897000433602	(T1D)	   1.20	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	2q33.2	2	203874196	CTLA4	CTLA4			1493			rs3087243-A	rs3087243	0	3087243	nearGene-3	0	NR	2E-17	16.69897000433602	(T1D)	   1.20	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	4q27	4	122408207	ADAD1	ADAD1			132612			rs17388568-A	rs17388568	0	17388568	intron	0	NR	6E-6	5.221848749616356	(T1D)	   1.10	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	4q27	4	122456825	IL2	IL2			3558			rs2069762-A	rs2069762	0	2069762	nearGene-5	0	NR	5E-7	6.30102999566398	(T1D)	   1.12	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	6q15	6	90248512	BACH2	BACH2			60468			rs11755527-G	rs11755527	0	11755527	intron	0	NR	3E-8	7.522878745280337	(T1D)	   1.10	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	10p15.1	10	6055320	IL2RA	IL2RA			3559			rs12722495-A	rs12722495	0	12722495	intron	0	NR	1E-38	38	(T1D)	   1.61	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	11p15.5	11	2148913	IGF2AS	IGF2;IGF2-AS;INS-IGF2			3481;51214;723961			rs1004446-G	rs1004446	0	1004446	intron;intron;intron	0	NR	3E-23	22.52287874528034	(T1D)	   1.40	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	12q13.2	12	56018703	IKZF4	IKZF4			64375			rs1701704-T	rs1701704	0	1701704	intron	0	NR	5E-18	17.30102999566398	(T1D)	   1.25	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	12q13.2	12	56088396	ERBB3	ERBB3			2065			rs2292239-T	rs2292239	0	2292239	intron	0	NR	3E-27	26.52287874528033	(T1D)	   1.30	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	NR	2E-38	37.69897000433602	(T1D)	   1.30	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	16p13.13	16	11086016	CLEC16A	CLEC16A			23274			rs12708716-G	rs12708716	0	12708716	intron	0	NR	5E-14	13.30102999566398	(T1D)	   1.20	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	16p11.2	16	28528527	IL27	IL27 - NUPR1	246778	26471		       21.69	        8.81	rs4788084-C	rs4788084	0	4788084	Intergenic	1	NR	1E-8	8	(T1D)	   1.15	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	17q12	17	39884510	ORMDL3	ZPBP2 - GSDMB	124626	55876		        6.61	       20.09	rs2872507-A	rs2872507	0	2872507	Intergenic	1	NR	2E-6	5.698970004336018	(T1D)	   1.10	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	18p11.21	18	12779948	PTPN2	CEP76 - PTPN2	79959	5771		       77.17	        5.53	rs2542151-G	rs2542151	0	2542151	Intergenic	1	NR	4E-13	12.39794000867204	(T1D)	   1.30	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	18q22.2	18	69864406	CD226	CD226			10666			rs763361-C	rs763361	0	763361	missense	0	NR	1E-9	8.999999999999998	(T1D)	   1.12	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	19p13.2	19	10364976	TYK2	TYK2			7297			rs2304256-?	rs2304256	0	2304256	missense	0	NR	1E-10	10	(T1D)	NR	NR	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	21q22.3	21	42421219	UBASH3A	UBASH3A			53347			rs3788013-A	rs3788013	0	3788013	intron	0	NR	1E-7	7	(T1D)	   1.10	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	22q12.3	22	37155567	IL2RB	IL2RB - C1QTNF6	3560	114904		        5.65	       24.60	rs743777-G	rs743777	0	743777	Intergenic	1	NR	2E-6	5.698970004336018	(T1D)	   1.10	[NR] 	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	11p15.5	11	2160994	INS	INS;INS-IGF2			3630;723961			rs689-?	rs689	0	689	intron;intron	0	NR	5E-196	195.301029995664	(T1D)	NR	NR	Affymetrix and Illumina [NR]	N
09/21/2011	21829393	Plagnol V	08/04/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829393	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes autoantibodies	12,501 European ancestry cases	3,598 affected siblings	15q14	15	38614840	RASGRP1	RASGRP1 - C15orf53	10125	400359		       50.03	       81.76	rs7171171-C	rs7171171	0	7171171	Intergenic	1	NR	2E-7	6.698970004336019	(T1D)	NR	NR	Affymetrix and Illumina [NR]	N
09/14/2011	21812969	Liu X	08/03/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21812969	Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population.	Parkinson's disease	268 Ashkenazi Jewish cases, 178 Ashkenazi Jewish controls	1,782 European ancestry cases, 1,658 European ancestry controls	9p13.3	9	35269822	UNC13B	UNC13B			10497			rs10121009-A	rs10121009	0	10121009	intron	0	0.21	3E-6	5.522878745280337		NR	NR	Illumina [525,124]	N
09/14/2011	21812969	Liu X	08/03/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21812969	Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population.	Parkinson's disease	268 Ashkenazi Jewish cases, 178 Ashkenazi Jewish controls	1,782 European ancestry cases, 1,658 European ancestry controls	17q21.31	17	46710944	NSF	NSF			4905			rs183211-T	rs183211	0	183211	intron	0	0.24	3E-7	6.522878745280337		NR	NR	Illumina [525,124]	N
09/14/2011	21812969	Liu X	08/03/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21812969	Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population.	Parkinson's disease	268 Ashkenazi Jewish cases, 178 Ashkenazi Jewish controls	1,782 European ancestry cases, 1,658 European ancestry controls	17q21.31	17	46781778	WNT3	WNT3			7473			rs415430-T	rs415430	0	415430	intron	0	0.786	7E-7	6.154901959985743		NR	NR	Illumina [525,124]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	3q27.2	3	184796825	VPS8	MAGEF1 - VPS8	64110	23355		       84.78	       15.31	rs4686760-G	rs4686760	0	4686760	Intergenic	1	0.46	1E-6	5.999999999999999	(vWF level)	    .15	[0.09-0.21] IU/dL decrease	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	5q22.2	5	112357674	EPB41L4A	EPB41L4A			64097			rs379440-G	rs379440	0	379440	intron	0	0.04	1E-6	5.999999999999999	(vWF levels)	    .34	[0.20-0.48] IU/dL increase	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	12q21.33	12	90215240	dessert	MRPL2P1 - LINC00615	347894	439916		      461.39	      702.78	rs10745527-G	rs10745527	0	10745527	Intergenic	1	0.28	5E-6	5.301029995663981	(vWF levels)	    .16	[0.10-0.22] IU/dL increase	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	19p13.3	19	5582524	SAFB2	SNRPEP4 - SAFB2	100130109	9667		        5.57	        4.47	rs732505-A	rs732505	0	732505	Intergenic	1	0.09	9E-6	5.045757490560675	(vWF levels)	    .25	[0.13-0.37] IU/dL increase	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	2p23.1	2	30303914	LBH	LBH - LCLAT1	81606	253558		       43.88	      143.32	rs6708166-A	rs6708166	0	6708166	Intergenic	1	0.40	1E-6	5.999999999999999	(FVIII activity)	    .17	[0.09-0.25] IU/dL decrease	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	9q34.2	9	133858398	VAV2	VAV2			7410			rs12344583-G	rs12344583	0	12344583	intron	0	0.20	8E-6	5.096910013008055	(FVIII activity)	    .20	[0.12-0.28] IU/dL increase	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	17q11.2	17	33410403	ACCN1	ASIC2			40			rs1354492-A	rs1354492	0	1354492	intron	0	0.49	2E-6	5.698970004336018	(FVIII activity)	    .16	[0.10-0.22] IU/dL increase	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	6q15	6	89601247	ANKRD6	ANKRD6			22881			rs6454764-T	rs6454764	0	6454764	intron	0	0.06	5E-6	5.301029995663981	(vWF levels)	    .31	[0.17-0.45] IU/dL increase	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	9q21.31	9	78695764	KRT18P24	PSAT1 - MTND2P8	29968	100873178		      365.67	       45.96	rs1757948-G	rs1757948	0	1757948	Intergenic	1	0.27	7E-6	5.154901959985742	(vWF levels)	    .15	[0.09-0.21] IU/dL increase	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	18q12.1	18	27989094	CDH2	CDH2			1000			rs2298574-G	rs2298574	0	2298574	intron	0	0.08	6E-6	5.221848749616356	(vWF levels)	    .27	[0.15-0.39] IU/dL decrease	Illumina [442,728]	N
09/08/2011	21810271	Antoni G	08/02/2011	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21810271	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	12q23.3	12	103745256	STAB2	STAB2			55576			rs7306642-A	rs7306642	0	7306642	missense	0	0.07	3E-6	5.522878745280337	(FVIII Activity)	    .30	[0.18-0.42] IU/dL increase	Illumina [442,728]	N
09/13/2011	21810643	Bakken TE	08/01/2011	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21810643	Association of genetic variants on 15q12 with cortical thickness and cognition in schizophrenia.	Cortical thickness	573 European ancestry cases, 481 European ancestry controls	NA	15q12	15	26032398	LOC100128714	LOC100128714			100128714			rs4906844-?	rs4906844	0	4906844	intron	0	NR	1E-8	8		    .07	[NR] mm decrease	Affymetrix [597,198]	N
09/06/2011	21810746	Chantarangsu S	08/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21810746	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases	6p21.33	6	31150242	CCHCR1	CCHCR1			54535			rs1265112-G	rs1265112	0	1265112	intron	0	0.06	1E-8	8		   4.36	[2.58-7.36] 	Illumina [499,730]	N
09/06/2011	21810746	Chantarangsu S	08/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21810746	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases	5q14.3	5	90485154	POLR3G	POLR3G			10622			rs2562519-A	rs2562519	0	2562519	intron	0	0.5	5E-6	5.301029995663981		NR	NR	Illumina [499,730]	N
09/06/2011	21810746	Chantarangsu S	08/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21810746	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases	2p16.1	2	60307064	Intergenic	RNA5SP94 - MIR4432	100873327	100616473		      612.20	       80.30	rs6545803-G	rs6545803	0	6545803	Intergenic	1	0.50	6E-6	5.221848749616356		NR	NR	Illumina [499,730]	N
09/06/2011	21846871	Mehta NN	08/01/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21846871	A genome-wide association study in europeans and South asians identifies 5 new Loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 6,996 South Asian cases, 15,062 controls	21,408 cases, 19,185 controls	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-?	rs9349379	0	9349379	intron	0	NR	9E-26	25.04575749056067		NR	NR	Illumina [~575,00]	N
09/06/2011	21846871	Mehta NN	08/01/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21846871	A genome-wide association study in europeans and South asians identifies 5 new Loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 6,996 South Asian cases, 15,062 controls	21,408 cases, 19,185 controls	1p32.2	1	56500678	PPAP2B	PPAP2B			8613			rs17114046-?	rs17114046	0	17114046	intron	0	NR	3E-7	6.522878745280337		NR	NR	Illumina [~575,00]	N
09/03/2011	21804547	Dobbins SE	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804547	Common variation at 10p12.31 near MLLT10 influences meningioma risk.	Meningioma 	859 European ancestry cases, 704 European ancestry controls	774 European ancestry cases, 1,764 European ancestry controls	10p12.31	10	21541175	MLLT10	MLLT10			8028			rs11012732-A	rs11012732	0	11012732	intron	0	0.32	2E-14	13.69897000433602		   1.46	[1.32-1.61] 	Illumina [270,875]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	4q31.21	4	143082006	LOC729675	LSM3P4 - USP38	100130178	84640		      764.23	      102.91	rs7686660-T	rs7686660	0	7686660	Intergenic	1	0.27	2E-12	11.69897000433602		   1.16	[1.11-1.21] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	4q31.21	4	143436584	GAB1	GAB1			2549			rs3805236-G	rs3805236	0	3805236	intron	0	0.25	7E-8	7.154901959985742		   1.12	[1.08-1.17] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	5q22.1	5	111066174	TSLP	SLC25A46 - TSLP	91137	85480		      301.02	        3.91	rs1837253-C	rs1837253	0	1837253	Intergenic	1	0.35	1E-16	16		   1.17	[1.13-1.22] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32187804	PBX2	PBX2			5089			rs204993-A	rs204993	0	204993	intron	0	0.58	2E-15	14.69897000433602		   1.17	[1.12-1.21] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32216568	NOTCH4	NOTCH4			4855			rs404860-A	rs404860	0	404860	intron	0	0.50	4E-23	22.39794000867203		   1.21	[1.16-1.25] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32370918	C6orf10	C6orf10			10665			rs3129943-T	rs3129943	0	3129943	intron	0	0.62	3E-15	14.52287874528034		   1.17	[1.12-1.21] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32390736	BTNL2	HCG23			414764			rs3117098-G	rs3117098	0	3117098	ncRNA	0	0.25	5E-12	11.30102999566398		   1.16	[1.11-1.21] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32446496	HLA-DRA	TRNAI25			100189401			rs3129890-T	rs3129890	0	3129890		0	0.61	5E-13	12.30102999566398		   1.15	[1.11-1.20] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32690302	HLA-DQB1	TRNAI25			100189401			rs7775228-A	rs7775228	0	7775228		0	0.63	5E-15	14.30102999566398		   1.17	[1.12-1.21] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32720196	HLA-DQA2	TRNAI25			100189401			rs9275698-T	rs9275698	0	9275698		0	0.79	5E-12	11.30102999566398		   1.18	[1.12-1.24] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	6p21.32	6	32993584	HLA-DOA	TRNAI25			100189401			rs9500927-T	rs9500927	0	9500927		0	0.26	4E-9	8.397940008672036		   1.13	[1.09-1.18] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	10p14	10	8930055	LOC338591	RNA5SP299 - LINC00709	100873574	100507163		      273.22	      345.56	rs10508372-C	rs10508372	0	10508372	Intergenic	1	0.433	2E-15	14.69897000433602		   1.16	[1.12-1.21] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	12q13.2	12	55970537	CDK2	CDK2;PMEL			1017;6490			rs2069408-C	rs2069408	0	2069408	intron;intron	0	0.23	1E-10	10		   1.15	[1.10-1.20] 	Illumina [458,847]	N
08/27/2011	21804548	Hirota T	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804548	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	12q13.2	12	56018703	IKZF4	IKZF4			64375			rs1701704-G	rs1701704	0	1701704	intron	0	0.18	2E-13	12.69897000433602		   1.19	[1.14-1.25] 	Illumina [458,847]	N
08/20/2011	21804549	Torgerson DG	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804549	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	1q23.1	1	158962765	PYHIN1	PYHIN1			149628			rs1101999-?	rs1101999	0	1101999	intron	0	NR	4E-9	8.397940008672036		NR	NR	Affymetrix & Illumina [>2 million] (imputed)	N
08/20/2011	21804549	Torgerson DG	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804549	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	2q12.1	2	102337157	IL1RL1	IL1RL1			9173			rs3771180-?	rs3771180	0	3771180	intron	0	NR	2E-15	14.69897000433602		NR	NR	Affymetrix & Illumina [>2 million] (imputed)	N
08/20/2011	21804549	Torgerson DG	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804549	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	5q22.1	5	111066174	TSLP	SLC25A46 - TSLP	91137	85480		      301.02	        3.91	rs1837253-?	rs1837253	0	1837253	Intergenic	1	NR	1E-14	14		NR	NR	Affymetrix & Illumina [>2 million] (imputed)	N
08/20/2011	21804549	Torgerson DG	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804549	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	9p24.1	9	6193455	IL33	RANBP6 - GTF3AP1	26953	100135064		      177.82	        2.59	rs2381416-?	rs2381416	0	2381416	Intergenic	1	NR	2E-12	11.69897000433602		NR	NR	Affymetrix & Illumina [>2 million] (imputed)	N
08/20/2011	21804549	Torgerson DG	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804549	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	17q12	17	39908152	GSDMB	GSDMB			55876			rs11078927-?	rs11078927	0	11078927	intron	0	NR	2E-16	15.69897000433602		NR	NR	Affymetrix & Illumina [>2 million] (imputed)	N
08/20/2011	21804549	Torgerson DG	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804549	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	1q21.3	1	152520083	CRCT1	CRCT1 - LCE3E	54544	353145		        4.08	       45.62	rs4845783-?	rs4845783	0	4845783	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [>2 million] (imputed)	N
08/20/2011	21804549	Torgerson DG	07/31/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21804549	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	11q23.2	11	114360533	C11orf71	LOC101928940			101928940			rs11214966-?	rs11214966	0	11214966	intron	0	NR	6E-7	6.221848749616355		NR	NR	Affymetrix & Illumina [>2 million] (imputed)	N
08/18/2011	21801394	Genin E	07/29/2011	Orphanet J Rare Dis	http://www.ncbi.nlm.nih.gov/pubmed/21801394	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	6	31039078	C6orf205	TRNAI25			100189401			rs2844665-C	rs2844665	0	2844665		0	0.62	3E-7	6.522878745280337		   1.54	[1.30-1.82] 	Illumina [303,039]	N
08/18/2011	21801394	Genin E	07/29/2011	Orphanet J Rare Dis	http://www.ncbi.nlm.nih.gov/pubmed/21801394	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	6	31125810	PSORS1C1	PSORS1C1			170679			rs3815087-A	rs3815087	0	3815087	UTR-5	0	0.21	3E-7	6.522878745280337		   1.53	[1.29-1.80] 	Illumina [303,039]	N
08/18/2011	21801394	Genin E	07/29/2011	Orphanet J Rare Dis	http://www.ncbi.nlm.nih.gov/pubmed/21801394	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	6	31168676	POU5F1	POU5F1			5460			rs3130501-G	rs3130501	0	3130501	intron	0	0.74	2E-8	7.698970004336018		   1.74	[1.43-2.13] 	Illumina [303,039]	N
08/18/2011	21801394	Genin E	07/29/2011	Orphanet J Rare Dis	http://www.ncbi.nlm.nih.gov/pubmed/21801394	Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	424 European ancestry cases, 1,881 European ancestry controls	NA	6p21.33	6	31440051	HCP5	LINC01149			101929111			rs9469003-C	rs9469003	0	9469003	nearGene-5	0	0.15	2E-9	8.698970004336019		   1.73	[1.44-2.08] 	Illumina [303,039]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61790331	C11orf10	TMEM258			746			rs102275-T	rs102275	0	102275	intron	0	NR	7E-64	63.15490195998574	(ALA)	    .02	[NR] % dcrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61784455	C11orf9	MYRF			745			rs174536-A	rs174536	0	174536	intron	0	NR	1E-63	62.99999999999999	(a-linolenic acid)	    .02	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61650000	DAGLA	RPLP0P2 - DAGLA	113157	747		       10.55	       30.43	rs1692120-A	rs1692120	0	1692120	Intergenic	1	NR	1E-8	8	(ALA)	    .01	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61803311	FADS1	FADS1			3992			rs174547-T	rs174547	0	174547	intron	0	NR	3E-64	63.52287874528032	(ALA)	    .02	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61830500	FADS2	FADS2			9415			rs1535-A	rs1535	0	1535	intron	0	NR	3E-63	62.52287874528033	(ALA)	    .02	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61872101	FADS3	FADS2 - FADS3	9415	3995		        4.75	        1.42	rs174448-A	rs174448	0	174448	Intergenic	1	NR	4E-25	24.39794000867203	(ALA)	    .01	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61796827	FEN1	FEN1			2237			rs4246215-T	rs4246215	0	4246215	UTR-3	0	NR	9E-60	59.04575749056067	(ALA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	2q21.3	2	135787729	LCT	LCT			3938			rs16832011-A	rs16832011	0	16832011	nearGene-3	0	NR	3E-7	6.522878745280337	(ALA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	16p13.11	16	14989008	PDXDC1	PDXDC1			23042			rs4985167-T	rs4985167	0	4985167	intron	0	NR	3E-7	6.522878745280337	(ALA)	    .01	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61896219	RAB3IL1	MIR6746 - RAB3IL1	102465446	5866		       17.94	        1.02	rs174468-A	rs174468	0	174468	Intergenic	1	NR	1E-12	12	(ALA)	    .01	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61792609	C11orf10	TMEM258;FEN1;MIR611			746;2237;693196			rs174538-A	rs174538	0	174538	UTR-5;nearGene-5;nearGene-5	0	NR	5E-58	57.30102999566397	(EPA)	    .08	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61783884	C11orf9	MYRF			745			rs174535-T	rs174535	0	174535	cds-synon	0	NR	6E-58	57.22184874961634	(Eicosapentaenoic acid)	    .08	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61804006	FADS1	FADS1			3992			rs174550-T	rs174550	0	174550	intron	0	NR	1E-57	56.99999999999999	(EPA)	    .08	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61832870	FADS2	FADS2			9415			rs174574-A	rs174574	0	174574	intron	0	NR	4E-55	54.39794000867203	(EPA)	    .08	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61796827	FEN1	FEN1			2237			rs4246215-T	rs4246215	0	4246215	UTR-3	0	NR	6E-55	54.22184874961635	(EPA)	    .08	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61872101	FADS3	FADS2 - FADS3	9415	3995		        4.75	        1.42	rs174448-A	rs174448	0	174448	Intergenic	1	NR	7E-28	27.15490195998574	(EPA)	    .05	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61896219	RAB3IL1	MIR6746 - RAB3IL1	102465446	5866		       17.94	        1.02	rs174468-A	rs174468	0	174468	Intergenic	1	NR	2E-17	16.69897000433602	(EPA)	    .05	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	11008389	ELOVL2	ELOVL2			54898			rs3798713-C	rs3798713	0	3798713	intron	0	NR	2E-12	11.69897000433602	(EPA)	    .04	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	11075793	HERV, FRD	ELOVL2-AS1			100506409			rs1321535-T	rs1321535	0	1321535	intron	0	NR	5E-11	10.30102999566398	(EPA)	    .04	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.3	11	61955173	BEST1	BEST1			7439			rs1109748-A	rs1109748	0	1109748	cds-synon	0	NR	5E-9	8.301029995663981	(EPA)	    .05	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.3	11	62028114	FTH1	RPS2P37 - INCENP	390206	3619		       15.47	       95.86	rs11230874-T	rs11230874	0	11230874	Intergenic	1	NR	2E-8	7.698970004336018	(EPA)	    .07	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	10959925	SYCP2L	SYCP2L			221711			rs6918936-C	rs6918936	0	6918936	intron	0	NR	3E-8	7.522878745280337	(EPA)	    .03	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	5q34	5	165337081	MAT2B	RPS15P6 - RPL21P59	391845	100271174		      735.61	      568.00	rs1145652-A	rs1145652	0	1145652	Intergenic	1	NR	8E-8	7.096910013008055	(EPA)	    .04	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	21q22.12	21	35044035	RUNX1	RUNX1			861			rs9983044-C	rs9983044	0	9983044	intron	0	NR	2E-7	6.698970004336019	(EPA)	    .07	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	1p32.1	1	60739797	NFIA	LOC101926964			101926964			rs1514178-T	rs1514178	0	1514178	intron	0	NR	2E-7	6.698970004336019	(EPA)	    .07	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6q12	6	68627895	BAI3	RNA5SP208 - BAI3	100873468	577		     1160.59	        7.42	rs2585617-A	rs2585617	0	2585617	Intergenic	1	NR	6E-7	6.221848749616355	(EPA)	    .03	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	19q12	19	31105872	TSHZ3	ZNF536 - TSHZ3	9745	57616		      395.05	      169.07	rs12459897-T	rs12459897	0	12459897	Intergenic	1	NR	8E-7	6.096910013008056	(EPA)	    .09	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61803311	FADS1	FADS1			3992			rs174547-T	rs174547	0	174547	intron	0	NR	4E-154	153.397940008672	(DPA)	    .07	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61790331	C11orf10	TMEM258			746			rs102275-T	rs102275	0	102275	intron	0	NR	8E-153	152.0969100130081	(DPA)	    .07	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61830500	FADS2	FADS2			9415			rs1535-A	rs1535	0	1535	intron	0	NR	3E-152	151.5228787452803	(DPA)	    .07	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61783884	C11orf9	MYRF			745			rs174535-T	rs174535	0	174535	cds-synon	0	NR	1E-151	151	(DPA)	    .07	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61796827	FEN1	FEN1			2237			rs4246215-T	rs4246215	0	4246215	UTR-3	0	NR	1E-139	139	(DPA)	    .07	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61872101	FADS3	FADS2 - FADS3	9415	3995		        4.75	        1.42	rs174448-A	rs174448	0	174448	Intergenic	1	NR	3E-60	59.52287874528033	(DPA)	    .05	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	10982740	ELOVL2	ELOVL2			54898			rs3734398-T	rs3734398	0	3734398	UTR-3	0	NR	1E-43	43	(DPA)	    .04	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	11075793	HERV, FRD	ELOVL2-AS1			100506409			rs1321535-T	rs1321535	0	1321535	intron	0	NR	1E-38	38	(DPA)	    .04	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	10968908	SYCP2L	SYCP2L			221711			rs4713103-T	rs4713103	0	4713103	intron	0	NR	3E-36	35.52287874528034	(DPA)	    .04	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61896219	RAB3IL1	MIR6746 - RAB3IL1	102465446	5866		       17.94	        1.02	rs174468-A	rs174468	0	174468	Intergenic	1	NR	3E-35	34.52287874528033	(Docosapentaenoic acid)	    .04	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.3	11	61944003	BEST1	RAB3IL1 - BEST1	5866	7439		       23.73	        5.88	rs2521572-T	rs2521572	0	2521572	Intergenic	1	NR	2E-9	8.698970004336019	(DPA)	    .05	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.2	11	61723014	DAGLA	DAGLA			747			rs198426-T	rs198426	0	198426	intron	0	NR	3E-9	8.522878745280337	(DPA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	NR	9E-9	8.045757490560675	(DPA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.3	11	61978819	FTH1	FTH1 - RPS2P37	2495	390206		       11.16	       32.90	rs10792320-A	rs10792320	0	10792320	Intergenic	1	NR	8E-8	7.096910013008055	(DPA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	21q22.3	21	43984457	AGPAT3	AGPAT3			56894			rs7435-A	rs7435	0	7435	UTR-3	0	NR	2E-7	6.698970004336019	(DPA)	    .02	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	13q33.1	13	103407737	SLC10A2	SLC10A2 - ATP6V1G1P7	6555	100874514		      340.89	       36.28	rs9586179-T	rs9586179	0	9586179	Intergenic	1	NR	4E-7	6.397940008672037	(DPA)	    .05	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p21.33	6	32103240	TNXB	TNXB			7148			rs3117181-C	rs3117181	0	3117181	intron	0	NR	5E-7	6.30102999566398	(DPA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	14q12	14	28647489	FOXG1	EIF4A1P12 - BTF3P2	100462830	283631		       53.57	       25.49	rs12587311-T	rs12587311	0	12587311	Intergenic	1	NR	5E-7	6.30102999566398	(DPA)	    .01	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	11q12.3	11	62048331	INCENP	RPS2P37 - INCENP	390206	3619		       35.68	       75.64	rs4963452-T	rs4963452	0	4963452	Intergenic	1	NR	6E-7	6.221848749616355	(DPA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	4p15.2	4	26942692	STIM2	STIM2			57620			rs6844153-T	rs6844153	0	6844153	intron	0	NR	6E-7	6.221848749616355	(DPA)	    .02	[NR] % increase	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	10994782	ELOVL2	ELOVL2			54898			rs2236212-C	rs2236212	0	2236212	intron	0	NR	1E-15	15	(Lower docosahexaenoic acid)	    .11	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	10968908	SYCP2L	SYCP2L			221711			rs4713103-T	rs4713103	0	4713103	intron	0	NR	8E-14	13.09691001300805	(DHA)	    .11	[NR] % decrease	Affymetrix & Illumina [NR]	N
09/01/2011	21829377	Lemaitre RN	07/28/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21829377	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Phospholipid levels (plasma)	8,866 European ancestry individuals	NR	6p24.2	6	11074114	HERV, FRD	ELOVL2-AS1			100506409			rs4711171-T	rs4711171	0	4711171	intron	0	NR	5E-13	12.30102999566398	(DHA)	    .01	[NR] % decrease	Affymetrix & Illumina [NR]	N
08/19/2011	21795503	Alkelai A	07/27/2011	FASEB J	http://www.ncbi.nlm.nih.gov/pubmed/21795503	Identification of new schizophrenia susceptibility loci in an ethnically homogeneous, family-based, Arab-Israeli sample.	Schizophrenia	189 Arab-Israeli founder individuals from 57 families	627 European ancestry cases, 541 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [307,472]	N
09/08/2011	21799462	Srinivasan Y	07/27/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21799462	Genome-wide association study of epirubicin-induced leukopenia in Japanese patients.	Epirubicin-induced leukopenia 	67 Japanese ancestry cases, 203 Japanese ancestry controls	48 Japanese ancestry cases	8p23.1	8	6465757	MCPH1	MCPH1			79648			rs2916733-C	rs2916733	0	2916733	intron	0	0.39	2E-9	8.698970004336019		   2.74	[1.96-3.83] 	Illumina [478,359]	N
09/08/2011	21799462	Srinivasan Y	07/27/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21799462	Genome-wide association study of epirubicin-induced leukopenia in Japanese patients.	Epirubicin-induced leukopenia 	67 Japanese ancestry cases, 203 Japanese ancestry controls	48 Japanese ancestry cases	4q25	4	112406922	ALPK1	ALPK1			80216			rs6838440-C	rs6838440	0	6838440	intron	0	0.51	3E-6	5.522878745280337		   2.10	[1.49-2.96] 	Illumina [478,359]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-?	rs1800562	0	1800562	missense	0	NR	3E-7	6.522878745280337	(ferritin)	    .39	[0.24-0.54] ng/ml increase	Illumina [343,866]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-?	rs1800562	0	1800562	missense	0	NR	4E-9	8.397940008672036	(Iron)	    .44	[0.29-0.59] ng/ml increase	Illumina [343,866]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-?	rs1800562	0	1800562	missense	0	NR	5E-11	10.30102999566398	(Tf)	    .51	[0.36-0.66] ng/ml decrease	Illumina [343,866]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-?	rs1800562	0	1800562	missense	0	NR	3E-15	14.52287874528034	(Tf Sat)	    .61	[0.46-0.76] ng/ml increase	Illumina [343,866]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-?	rs855791	0	855791	missense	0	NR	9E-11	10.04575749056067	(Iron)	    .24	[0.17-0.31] ng/ml decrease	Illumina [343,866]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-?	rs855791	0	855791	missense	0	NR	4E-9	8.397940008672036	(Tf Sat)	    .22	[0.15-0.29] ng/ml decrease	Illumina [343,866]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-?	rs855791	0	855791	missense	0	NR	5E-7	6.30102999566398	(MCH)	    .19	[0.12-0.26] ng/ml decrease	Illumina [343,866]	N
08/18/2011	21785125	Traglia M	07/25/2011	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/21785125	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera individuals	NA	3q22.1	3	133765185	TF	TF			7018			rs3811647-?	rs3811647	0	3811647	intron	0	NR	2E-16	15.69897000433602	(Tf)	    .34	[0.26-0.42] ng/ml increase	Illumina [343,866]	N
08/18/2011	21799836	Cui B	07/22/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21799836	A genome-wide association study confirms previously reported loci for type 2 diabetes in Han Chinese.	Type 2 diabetes	793 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	4,445 Han Chinese ancestry cases, 4,458 Han Chinese ancestry controls	11p15.4	11	2822986	KCNQ1	KCNQ1			3784			rs163182-C	rs163182	0	163182	intron	0	0.34	2E-17	16.69897000433602		   1.28	[NR] 	Illumina [474,515]	N
08/18/2011	21799836	Cui B	07/22/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21799836	A genome-wide association study confirms previously reported loci for type 2 diabetes in Han Chinese.	Type 2 diabetes	793 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	4,445 Han Chinese ancestry cases, 4,458 Han Chinese ancestry controls	15q22.2	15	62121815	C2CD4A, C2CD4B	NPM1P47 - C2CD4B	100129972	388125		       38.51	       41.72	rs1436953-G	rs1436953	0	1436953	Intergenic	1	0.64	8E-6	5.096910013008055		   1.14	[NR] 	Illumina [474,515]	N
10/01/2011	21777205	Dumitrescu L	07/21/2011	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21777205	Evidence for age as a modifier of genetic associations for lipid levels.	Lipid traits	282 European ancestry children, 66 African American children, 63 Hispanic children	1,627 European ancestry individuals, 1,478 African ancestry individuals, 1,443 Hispanic individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [420,005]	N
09/02/2011	21814517	Noguchi E	07/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21814517	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	8q24.11	8	117013406	SLC30A8	SLC30A8			169026			rs3019885-G	rs3019885	0	3019885	intron	0	0.31	5E-13	12.30102999566398		   1.34	[1.24-1.45] 	Illumina [450,326]	N
09/02/2011	21814517	Noguchi E	07/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21814517	Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.	Asthma	938 Japanese ancestry cases, 2,376 Japanese ancestry controls	1653 East Asian ancestry cases, 1453 East Asian ancestry controls	6p21.32	6	33075103	HLA, DPB1	HLA-DPA1;HLA-DPB1			3113;3115			rs987870-C	rs987870	0	987870	intron;nearGene-5	0	0.14	2E-10	9.698970004336017		   1.40	[1.26-1.55] 	Illumina [450,326]	N
08/20/2011	21811574	van Manen D	07/21/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21811574	Genome-wide association scan in HIV-1-infected individuals identifying variants influencing disease course.	HIV-1 progression	404 Other ancestry cases	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [309,494]	N
10/01/2011	21775533	Tan XL	07/20/2011	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/21775533	Genetic variation predicting cisplatin cytotoxicity associated with overall survival in lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in small cell and non-small cell lung cancers	91 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	222 European ancestry small cell lung cancer cases, 961 European ancestry non-small cell lung cancer cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina and Affymetrix [1,348,798]	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to death)	25,007 European ancestry individuals	10,411 European ancestry individuals	11q24.2	11	124146786	VWA5A	VWA5A			4013			rs4936894-A	rs4936894	0	4936894	UTR-3	0	0.23	2E-6	5.698970004336018		    .09	[0.05-0.13] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to death)	25,007 European ancestry individuals	10,411 European ancestry individuals	3q26.1	3	162964207	OTOL1	TOMM22P6 - RPS6P4	100287573	100131548		      477.26	      137.83	rs1425609-A	rs1425609	0	1425609	Intergenic	1	0.38	1E-6	5.999999999999999		    .08	[0.04-0.12] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to death)	25,007 European ancestry individuals	10,411 European ancestry individuals	12q13.13	12	51310050	BIN2	BIN2			51411			rs766903-A	rs766903	0	766903	intron	0	0.83	2E-6	5.698970004336018		    .09	[0.05-0.13] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	19p13.3	19	3927773	ATCAY	ATCAY			85300			rs10412199-G	rs10412199	0	10412199	UTR-3	0	0.67	3E-6	5.522878745280337		   1.10	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	3q26.2	3	168968888	MECOM	RPL21P43 - MECOM	100271163	2122		      109.72	      114.61	rs16852912-T	rs16852912	0	16852912	Intergenic	1	0.08	3E-6	5.522878745280337		   1.18	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	13q14.2	13	47813587	SUCLA2	RPL27AP8 - SUCLA2	100271605	8803		       46.49	      129.07	rs8001976-T	rs8001976	0	8001976	Intergenic	1	0.44	3E-6	5.522878745280337		   1.09	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	1p31.1	1	80268896	ELTD1	ADH5P2 - HMGB1P18	343296	646526		      746.43	       14.46	rs11162963-T	rs11162963	0	11162963	Intergenic	1	0.63	4E-6	5.397940008672037		   1.09	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	12p13.1	12	13962548	GRIN2B	GRIN2B			2904			rs4764043-T	rs4764043	0	4764043	intron	0	0.08	6E-6	5.221848749616356		   1.17	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	5q33.1	5	153260117	GRIA1	TRNAC32P - GRIA1	100189508	2890		      650.91	      230.41	rs3112530-G	rs3112530	0	3112530	Intergenic	1	0.92	7E-6	5.154901959985742		   1.18	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	2q37.3	2	237362251	COL6A3	COL6A3			1293			rs10202497-C	rs10202497	0	10202497	intron	0	0.86	8E-6	5.096910013008055		   1.12	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2011	21782286	Walter S	07/20/2011	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/21782286	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	1p34.1	1	43750157	ST3GAL3	ST3GAL3			6487			rs2367725-T	rs2367725	0	2367725	intron	0	0.42	9E-6	5.045757490560675		   1.08	[NR] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/18/2011	21771975	Chung CM	07/19/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21771975	A genome-wide association study reveals a quantitative trait locus of adiponectin on CDH13 that predicts cardiometabolic outcomes.	Adiponectin levels	382 Han Chinese ancestry young-onset-hypertensive cases	559 Han Chinese ancestry young-onset-hypertensive cases	16q23.3	16	82628663	CDH13	CDH13			1012			rs4783244-T	rs4783244	0	4783244	intron	0	0.30	6E-17	16.22184874961636	(Second stage)	    .35	[0.24-0.46] ug/mL increase	Illumina [509,174]	N
09/03/2011	21771265	Yosifova A	07/19/2011	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/21771265	Genome-wide association study on bipolar disorder in the Bulgarian population.	Bipolar disorder	188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls	122 Bulgarian ancestry cases, 328 Bulgarian ancestry controls	19q13.2	19	42016956	GRIK5	GRIK5			2901			rs8099939-T	rs8099939	0	8099939	intron	0	0.39	2E-6	5.698970004336018		   1.95	[1.43-2.67] 	Illumina [497,732]	N
09/03/2011	21771265	Yosifova A	07/19/2011	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/21771265	Genome-wide association study on bipolar disorder in the Bulgarian population.	Bipolar disorder	188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls	122 Bulgarian ancestry cases, 328 Bulgarian ancestry controls	20q13.13	20	50758705	PARD6B	PARD6B - BCAS4	84612	55653		        4.96	       36.19	rs6122972-A	rs6122972	0	6122972	Intergenic	1	0.82	3E-6	5.522878745280337		   2.02	[1.46-2.80] 	Illumina [497,732]	N
09/03/2011	21771265	Yosifova A	07/19/2011	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/21771265	Genome-wide association study on bipolar disorder in the Bulgarian population.	Bipolar disorder	188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls	122 Bulgarian ancestry cases, 328 Bulgarian ancestry controls	15q25.1	15	78932341	CTSH	CTSH			1512			rs2289700-A	rs2289700	0	2289700	intron	0	0.07	9E-6	5.045757490560675		   2.13	[1.53-2.95] 	Illumina [497,732]	N
08/12/2011	21768215	Tin A	07/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21768215	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	6q23.2	6	134452416	Intergenic	LINC01010;LOC101928231			154092;101928231			rs9321453-T	rs9321453	0	9321453	intron;intron	0	0.42	1E-9	8.999999999999998	(AA)	    .14	[NR] mg/dl increase	Affymetrix [NR] (imputed)	N
08/12/2011	21768215	Tin A	07/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21768215	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	11	64591749	SLC22A12	SLC22A12			116085			rs12800450-T	rs12800450	0	12800450	missense	0	0.01	3E-16	15.52287874528034	(AA)	   1.19	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
08/12/2011	21768215	Tin A	07/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21768215	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	11	64778919	MEN1,SF1,MAP4K2,PYGM,RASGRP2,CDC42BPG,NRXN2	SF1			7536			rs606458-T	rs606458	0	606458	nearGene-5	0	0.35	6E-11	10.22184874961635	(AA)	    .18	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
08/12/2011	21768215	Tin A	07/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21768215	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	11	64789582	MAP4K2	MAP4K2			5871			rs493573-A	rs493573	0	493573	cds-synon	0	0.03	2E-17	16.69897000433602	(AA)	    .80	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
08/12/2011	21768215	Tin A	07/18/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21768215	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	11	64757744	Intergenic	PYGM			5837			rs589691-T	rs589691	0	589691	intron	0	0.33	9E-8	7.045757490560674	(AA)	    .15	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
08/15/2011	21761138	Peters U	07/15/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21761138	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	18q21.1	18	48927093	SMAD7	SMAD7			4092			rs4939827-?	rs4939827	0	4939827	intron	0	0.51	1E-7	7		   1.14	[1.08-1.18] 	Illumina [378,739]	N
08/15/2011	21761138	Peters U	07/15/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21761138	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	15q13.3	15	32702555	SCG5, GREM1	SCG5 - GREM1	6447	26585		        5.46	       15.42	rs4779584-?	rs4779584	0	4779584	Intergenic	1	0.19	2E-8	7.698970004336018		   1.18	[1.11-1.24] 	Illumina [378,739]	N
08/15/2011	21761138	Peters U	07/15/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21761138	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	8q23.3	8	116618444	EIF3H	LINC00536 - EIF3H	100859921	8667		      293.39	       26.37	rs16892766-?	rs16892766	0	16892766	Intergenic	1	0.08	4E-7	6.397940008672037		   1.24	[1.14-1.34] 	Illumina [378,739]	N
08/15/2011	21761138	Peters U	07/15/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21761138	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	11q23.1	11	111300984	LOC120376	COLCA2;COLCA1			120376;399948			rs3802842-?	rs3802842	0	3802842	intron;nearGene-5	0	0.28	4E-7	6.397940008672037		   1.14	[1.08-1.20] 	Illumina [378,739]	N
08/15/2011	21761138	Peters U	07/15/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21761138	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	12q24.21	12	115453598	MED13L	TBX3 - UBA52P7	6926	100128617		      769.43	      139.01	rs7315438-?	rs7315438	0	7315438	Intergenic	1	0.58	6E-6	5.221848749616356		   1.11	[1.06-1.15] 	Illumina [378,739]	N
08/06/2011	21764829	Png E	07/15/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21764829	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	6	32421871	HLA-DR	TRNAI25			100189401			rs3135363-?	rs3135363	0	3135363		0	NR	7E-22	21.15490195998574		   1.53	[1.35-1.74] 	Illumina [455,508]	N
08/06/2011	21764829	Png E	07/15/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21764829	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.32	6	33087084	HLA-DPB1	HLA-DPB1			3115			rs9277535-?	rs9277535	0	9277535	UTR-3	0	NR	3E-12	11.52287874528034		   1.39	[1.23-1.59] 	Illumina [455,508]	N
08/06/2011	21764829	Png E	07/15/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21764829	A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.	Hepatitis B vaccine response	1,683 Indonesian ancestry individuals	1,931 Indonesian ancestry individuals	6p21.33	6	31903079	HLA	C2;ZBTB12			717;221527			rs9267665-?	rs9267665	0	9267665	intron;nearGene-5	0	NR	1E-17	17		   2.05	[1.64-2.57] 	Illumina [455,508]	N
08/12/2011	21757650	Debette S	07/14/2011	Circ Res	http://www.ncbi.nlm.nih.gov/pubmed/21757650	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	6p21.1	6	43957789	MGC45491, MRPL14	TRNAI25			100189401			rs4513773-G	rs4513773	0	4513773		0	0.47	1E-584	584		NR	NR	Affymetrix [2,540,233] (imputed)	N
08/12/2011	21757650	Debette S	07/14/2011	Circ Res	http://www.ncbi.nlm.nih.gov/pubmed/21757650	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	8q23.1	8	105569300	ZFPM2, LRP12	ZFPM2			23414			rs6993770-T	rs6993770	0	6993770	intron	0	0.32	5E-23	22.30102999566398		NR	NR	Affymetrix [2,540,233] (imputed)	N
08/12/2011	21757650	Debette S	07/14/2011	Circ Res	http://www.ncbi.nlm.nih.gov/pubmed/21757650	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	9p24.2	9	2691186	KCNV2, VLDLR	VLDLR - KCNV2	7436	169522		       36.70	       26.34	rs10738760-A	rs10738760	0	10738760	Intergenic	1	0.49	1E-39	38.99999999999999		NR	NR	Affymetrix [2,540,233] (imputed)	N
08/12/2011	21757650	Debette S	07/14/2011	Circ Res	http://www.ncbi.nlm.nih.gov/pubmed/21757650	Identification of cis- and trans-acting genetic variants explaining up to half the variation in circulating vascular endothelial growth factor levels.	Vascular endothelial growth factor levels	3,527 European ancestry individuals	1,727 European ancestry individuals	6p21.1	6	43929990	MGC45491, VEGF	LOC100132354			100132354			rs9472155-T	rs9472155	0	9472155	intron	0	0.22	2E-26	25.69897000433602		NR	NR	Affymetrix [2,540,233] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	12p12.1	12	23793212	SOX5	SOX5			6660			rs11047102-?	rs11047102	0	11047102	intron	0	0.10	5E-6	5.301029995663981	(IcSSc)	   1.24	[1.13-1.35] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	16q24.1	16	85958099	IRF8	MIR6774 - LINC01082	102466732	100506542		       39.68	      238.08	rs11642873-?	rs11642873	0	11642873	Intergenic	1	0.81	2E-12	11.69897000433602	(IcSSc)	   1.33	[1.23-1.45] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7p12.1	7	50597225	GRB10	GRB10			2887			rs12540874-?	rs12540874	0	12540874	intron	0	0.40	1E-6	5.999999999999999	(IcSSc)	   1.15	[1.09-1.22] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	1q24.2	1	167451188	CD247	CD247			919			rs2056626-?	rs2056626	0	2056626	intron	0	NR	3E-6	5.522878745280337	(IcSSc)	   1.23	[1.12-1.33] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	2q32.3	2	191038032	STAT4	STAT4			6775			rs3821236-?	rs3821236	0	3821236	intron	0	NR	9E-8	7.045757490560674	(IcSSc)	   1.31	[1.19-1.48] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	7	128954129	IRF5	TNPO3			23534			rs10488631-?	rs10488631	0	10488631	nearGene-3	0	NR	2E-10	9.698970004336017	(IcSSc)	   1.50	[1.32-1.69] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	12q13.2	12	56124624	RPL41, ESYT1	ZC3H10 - ESYT1	84872	23344		        2.13	        3.58	rs11171747-?	rs11171747	0	11171747	Intergenic	1	0.39	6E-8	7.221848749616355	(dcSSc)	   1.23	[1.14-1.33] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	12p12.1	12	23793212	SOX5	SOX5			6660			rs11047102-?	rs11047102	0	11047102	intron	0	0.10	1E-7	7	(ACA positive)	   1.36	[1.21-1.52] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	7	128954129	IRF5	TNPO3			23534			rs10488631-?	rs10488631	0	10488631	nearGene-3	0	NR	1E-9	8.999999999999998	(dcSSc)	   1.61	[1.38-1.88] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	7	128954129	IRF5	TNPO3			23534			rs10488631-?	rs10488631	0	10488631	nearGene-3	0	NR	2E-7	6.698970004336019	(ACA positive)	   1.52	[1.30-1.79] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	7q32.1	7	128954129	IRF5	TNPO3			23534			rs10488631-?	rs10488631	0	10488631	nearGene-3	0	NR	8E-7	6.096910013008056	(ATA positive)	   1.63	[1.34-1.98] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	6	32222629	NOTCH4	NOTCH4			4855			rs443198-?	rs443198	0	443198	cds-synon	0	0.63	9E-21	20.04575749056067	(ACA positive)	   1.82	[1.59-2.04] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	6	32701379	HLA-DQB1	TRNAI25			100189401			rs9275390-?	rs9275390	0	9275390		0	0.75	1E-7	7	(ATA positive)	   1.61	[1.35-1.92] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	6	32701379	HLA-DQB1	TRNAI25			100189401			rs9275390-?	rs9275390	0	9275390		0	0.25	3E-54	53.52287874528033	(ACA positive)	   2.38	[2.13-2.67] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	6	32251212	NOTCH4	C6orf10			10665			rs9296015-?	rs9296015	0	9296015	intron	0	0.81	1E-8	8	(ATA positive)	   1.85	[1.49-2.27] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	6	32441753	HLA-DRA	HLA-DRA			3122			rs3129882-?	rs3129882	0	3129882	intron	0	0.44	2E-27	26.69897000433602	(ATA positive)	   2.17	[1.88-2.50] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	6	33075103	HLA-DPA1, HLA-DPB1	HLA-DPA1;HLA-DPB1			3113;3115			rs987870-?	rs987870	0	987870	intron;nearGene-5	0	0.15	2E-20	19.69897000433602	(ATA positive)	   2.09	[1.78-2.45] 	Illumina [NR] (imputed)	N
08/12/2011	21779181	Gorlova O	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779181	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	6p21.32	6	32623148	HLA-DQA1, HLA-DRB1	TRNAI25			100189401			rs3129763-?	rs3129763	0	3129763		0	0.25	1E-11	11	(ATA positive)	   1.65	[1.42-1.91] 	Illumina [NR] (imputed)	N
08/12/2011	21757653	Lovely RS	07/14/2011	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/21757653	Assessment of genetic determinants of the association of &#x003b3;' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	4	154621096	FGG	FGG - LRAT	2266	9227		        8.35	        5.87	rs7681423-T	rs7681423	0	7681423	Intergenic	1	0.23	1E-109	109		    .29	[0.26-0.32] g/L decrease	Affymetrix [~2.5 million] (imputed)	N
08/12/2011	21757653	Lovely RS	07/14/2011	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/21757653	Assessment of genetic determinants of the association of &#x003b3;' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	4	154586438	FGA	FGA			2243			rs6050-C	rs6050	0	6050	missense	0	0.24	9E-90	89.04575749056066		    .26	[0.23-0.29] g/L decrease	Affymetrix [~2.5 million] (imputed)	N
08/12/2011	21757653	Lovely RS	07/14/2011	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/21757653	Assessment of genetic determinants of the association of &#x003b3;' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	4	154562762	FGB	FGB			2244			rs1800788-T	rs1800788	0	1800788	nearGene-5	0	0.20	1E-39	38.99999999999999		    .19	[0.16-0.22] g/L decrease	Affymetrix [~2.5 million] (imputed)	N
08/12/2011	21757653	Lovely RS	07/14/2011	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/21757653	Assessment of genetic determinants of the association of &#x003b3;' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	4	154530607	PLRG1	DCHS2 - PLRG1	54798	5356		       38.83	        4.39	rs12511469-A	rs12511469	0	12511469	Intergenic	1	0.19	2E-36	35.69897000433601		    .18	[0.15-0.21] g/L decrease	Affymetrix [~2.5 million] (imputed)	N
08/12/2011	21757653	Lovely RS	07/14/2011	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/21757653	Assessment of genetic determinants of the association of &#x003b3;' fibrinogen in relation to cardiovascular disease.	Fibrinogen	3,042 individuals	NA	4q31.3	4	154379907	DCHS2	DCHS2			54798			rs12651106-A	rs12651106	0	12651106	intron	0	0.17	2E-12	11.69897000433602		    .14	[0.10-0.18] g/L decrease	Affymetrix [~2.5 million] (imputed)	N
08/15/2011	21779381	Schurks M	07/14/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21779381	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	4q22.1	4	87834676	MEPE	MEPE			56955			rs7698623-?	rs7698623	0	7698623	intron	0	NR	3E-7	6.522878745280337	(migraineurs with aura - ischemic stroke)	   6.37	[3.15-12.90] 	Illumina [339,596]	N
08/15/2011	21779381	Schurks M	07/14/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21779381	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	5p15.33	5	1877166	IRX4	IRX4			50805			rs4975709-?	rs4975709	0	4975709	intron	0	NR	8E-7	6.096910013008056	(migraineurs with aura - ischemic stroke)	   5.06	[2.66-9.62] 	Illumina [339,596]	N
08/15/2011	21779381	Schurks M	07/14/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21779381	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	6p21.1	6	41655295	MDF1	TRNAI25			100189401			rs2143678-?	rs2143678	0	2143678		0	NR	4E-7	6.397940008672037	(migraineurs with aura - major CVD)	   3.05	[1.98-4.96] 	Illumina [339,596]	N
08/15/2011	21779381	Schurks M	07/14/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21779381	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	20q13.33	20	63264568	Intergenic	FLJ16779 - ARFGAP1	100192386	55738		        2.95	        8.22	rs1406961-?	rs1406961	0	1406961	Intergenic	1	NR	5E-7	6.30102999566398	(migraineurs with aura - CVD death)	  12.33	[4.62-32.87] 	Illumina [339,596]	N
08/15/2011	21779381	Schurks M	07/14/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21779381	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	11q23.3	11	117286177	BACE1	BACE1;RNF214			23621;257160			rs1047964-?	rs1047964	0	1047964	UTR-3;intron	0	NR	8E-7	6.096910013008056	(any migraine - CVD death)	   4.67	[2.53-8.62] 	Illumina [339,596]	N
08/15/2011	21779176	Winkelmann J	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779176	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	2p14	2	66554321	MEIS1	MEIS1			4211			rs2300478-G	rs2300478	0	2300478	intron	0	0.24	3E-49	48.52287874528034		   1.68	[1.57-1.81] 	Affymetrix [301,406]	N
08/15/2011	21779176	Winkelmann J	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779176	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	6p21.2	6	38398097	BTBD9	BTBD9			114781			rs9357271-T	rs9357271	0	9357271	intron	0	0.76	8E-22	21.09691001300805		   1.47	[1.35-1.47] 	Affymetrix [301,406]	N
08/15/2011	21779176	Winkelmann J	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779176	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	9p24.1	9	8846955	PTPRD	PTPRD			5789			rs1975197-A	rs1975197	0	1975197	intron	0	0.16	3E-10	9.522878745280336		   1.29	[1.19-1.40] 	Affymetrix [301,406]	N
08/15/2011	21779176	Winkelmann J	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779176	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	15q23	15	67744514	MAP2K5, SKOR1	MAP2K5			5607			rs12593813-G	rs12593813	0	12593813	intron	0	0.68	1E-22	22		   1.41	[1.32-1.52] 	Affymetrix [301,406]	N
08/15/2011	21779176	Winkelmann J	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779176	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	2p14	2	67843093	Intergenic	ETAA1 - C1D	54465	10438		      432.69	      199.11	rs6747972-A	rs6747972	0	6747972	Intergenic	1	0.44	9E-11	10.04575749056067		   1.23	[1.16-1.31] 	Affymetrix [301,406]	N
08/15/2011	21779176	Winkelmann J	07/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21779176	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	16q12.2	16	52590826	TOX3, BC034767	CASC16			643714			rs3104767-G	rs3104767	0	3104767	intron	0	0.58	9E-19	18.04575749056067		   1.35	[1.27-1.43] 	Affymetrix [301,406]	N
08/12/2011	21784300	Mick E	07/13/2011	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21784300	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 Other ancestry ADHD case offspring from 339 trios	NA	1p31.1	1	69890298	LRRC7	LRRC7			57554			rs12037173-?	rs12037173	0	12037173	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [835,136]	N
08/12/2011	21784300	Mick E	07/13/2011	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21784300	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 Other ancestry ADHD case offspring from 339 trios	NA	7q21.11	7	83979723	SEMA3A	SEMA3A			10371			rs797820-?	rs797820	0	797820	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [835,136]	N
08/12/2011	21784300	Mick E	07/13/2011	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21784300	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 Other ancestry ADHD case offspring from 339 trios	NA	11q13.1	11	64196475	STIP1	STIP1			10963			rs11607165-?	rs11607165	0	11607165	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [835,136]	N
08/12/2011	21784300	Mick E	07/13/2011	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21784300	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 Other ancestry ADHD case offspring from 339 trios	NA	8q11.21	8	48140605	Intergenic	UBE2V2 - RPL29P19	7336	389655		       75.90	      243.93	rs11778329-?	rs11778329	0	11778329	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [835,136]	N
08/12/2011	21784300	Mick E	07/13/2011	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21784300	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 Other ancestry ADHD case offspring from 339 trios	NA	9q34.3	9	135383930	Intergenic	C9orf62 - SOCS5P2	157927	100128299		       37.37	       63.52	rs10858396-?	rs10858396	0	10858396	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [835,136]	N
08/12/2011	21784300	Mick E	07/13/2011	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21784300	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 Other ancestry ADHD case offspring from 339 trios	NA	11q13.1	11	64212171	FERMT3	FERMT3			83706			rs12575642-?	rs12575642	0	12575642	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [835,136]	N
08/12/2011	21784300	Mick E	07/13/2011	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21784300	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 Other ancestry ADHD case offspring from 339 trios	NA	11q13.1	11	64224329	TRPT1	FERMT3;TRPT1;NUDT22			83706;83707;84304			rs1059440-?	rs1059440	0	1059440	nearGene-3;missense;nearGene-5	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [835,136]	N
08/04/2011	21752600	Chen J	07/12/2011	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/21752600	Two non-synonymous markers in PTPN21, identified by genome-wide association study data-mining and replication, are associated with schizophrenia.	Schizophrenia	1,658 European ancestry cases, 1,655 European ancestry controls	5,995 European ancestry cases, 5,902 European ancestry controls, 455 European ancestry individuals, 1,142 African American cases, 985 African American controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix & Perlgen [up to 727,905]	N
08/05/2011	21750111	Mbarek H	07/12/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750111	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	6	33065245	HLA-DPA1	HLA-DPA1			3113			rs3077-G	rs3077	0	3077	UTR-3	0	0.60	2E-61	60.69897000433602		   1.87	[1.73-2.01] 	Illumina [423,627]	N
08/05/2011	21750111	Mbarek H	07/12/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750111	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	6	33087084	HLA-DPB1	HLA-DPB1			3115			rs9277535-G	rs9277535	0	9277535	UTR-3	0	0.57	3E-54	53.52287874528033		   1.77	[1.65-1.91] 	Illumina [423,627]	N
08/05/2011	21750111	Mbarek H	07/12/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750111	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	6	32702478	HLA-DQB1	TRNAI25			100189401			rs2856718-A	rs2856718	0	2856718		0	0.48	4E-37	36.39794000867203		   1.56	[1.45-1.67] 	Illumina [423,627]	N
08/05/2011	21750111	Mbarek H	07/12/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750111	A genome-wide association study of chronic hepatitis B identified novel risk locus in a Japanese population.	Hepatitis B	458 Japanese ancestry cases, 2,056 Japanese ancestry controls	2,209 Japanese ancestry cases, 4,440 Japanese ancestry controls	6p21.32	6	32762235	HAL-DQB2	HLA-DQB2			3120			rs7453920-G	rs7453920	0	7453920	intron	0	0.83	6E-28	27.22184874961636		   1.81	[1.62-2.01] 	Illumina [423,627]	N
08/05/2011	21750109	Rafnar T	07/12/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750109	European genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene.	Bladder cancer	2,234 European ancestry cases, 41,603 European ancestry controls	3,371 European ancestry cases, 10,261 European ancestry controls, 269 Iranian ancestry cases, 246 Iranian ancestry controls	18q12.3	18	45729946	SLC14A1	SLC14A1			6563			rs17674580-T	rs17674580	0	17674580	intron	0	0.33	8E-11	10.09691001300805		   1.17	[1.11-1.22] 	Illumina [5,340,737] (imputed)	N
08/17/2011	21747397	Rietschel M	07/12/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21747397	Association between genetic variation in a region on chromosome 11 and schizophrenia in large samples from Europe.	Schizophrenia	1,169 European ancestry cases. 3,714 European ancestry controls	7,303 European ancestry cases, 26,274 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [475,427]	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-G	rs11209026	0	11209026	missense	0	0.93	2E-17	16.69897000433602		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	1q32.1	1	200991179	KIF21B	KIF21B			23046			rs2297909-G	rs2297909	0	2297909	intron	0	0.68	5E-12	11.30102999566398		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	2p15	2	62324337	Intergenic	MIR5192 - TMEM17	100847087	200728		      118.42	      136.56	rs10865331-A	rs10865331	0	10865331	Intergenic	1	0.37	7E-34	33.15490195998574		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	5q15	5	96788627	ERAP1	ERAP1			51752			rs30187-T	rs30187	0	30187	missense	0	0.33	2E-27	26.69897000433602		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	6p21.33	6	31398010	HLA-B	MICA;LOC101929072			100507436;101929072			rs4349859-A	rs4349859	0	4349859	nearGene-5;intron	0	0.04	1E-200	200	(less than)	NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	21q22.2	21	39097594	Intergenic	RPSAP64 - RPL23AP12	100873797	391282		      202.40	       29.96	rs378108-G	rs378108	0	378108	Intergenic	1	0.48	2E-11	10.69897000433602		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	1p36.11	1	24970693	RUNX3	MIR6731 - MIR4425	102465437	100616365		       51.28	       52.81	rs11249215-A	rs11249215	0	11249215	Intergenic	1	0.47	9E-11	10.04575749056067		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	5q33.3	5	159391737	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		       73.57	      525.00	rs6556416-C	rs6556416	0	6556416	Intergenic	1	0.67	2E-8	7.698970004336018		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	12p13.31	12	6393576	LTBR-TNFRSF1A	LTBR - RPL31P10	4055	390283		        2.01	       16.02	rs11616188-A	rs11616188	0	11616188	Intergenic	1	0.43	4E-12	11.39794000867204		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	4q21.21	4	80025321	ANTXR2	ANTXR2			118429			rs4389526-A	rs4389526	0	4389526	intron	0	0.63	9E-8	7.045757490560674		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	5p13.1	5	40490688	PTGER4	LINC00603 - PTGER4	102467077	5734		      437.36	      189.24	rs10440635-A	rs10440635	0	10440635	Intergenic	1	0.60	3E-7	6.522878745280337		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	9q34.3	9	136374886	CARD9	CARD9			64170			rs10781500-T	rs10781500	0	10781500	nearGene-5	0	0.42	1E-6	5.999999999999999		NR	NR	Illumina [2,223,620] (imputed)	N
07/30/2011	21743469	Evans DM	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743469	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	17q21.32	17	47691470	TBKBP1	KPNB1 - TBKBP1	3837	9755		        7.83	        2.59	rs8070463-C	rs8070463	0	8070463	Intergenic	1	0.51	5E-8	7.30102999566398		NR	NR	Illumina [2,223,620] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	2p11.2	2	85567174	GGCX, VAMP8, VAMP5, RNF181	GGCX - VAMP8	2677	8673		        5.64	       10.32	rs10187424-A	rs10187424	0	10187424	Intergenic	1	0.59	3E-15	14.52287874528034		   1.09	[1.06-1.12] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	2q37.3	2	237478585	Intergenic	COL6A3 - MLPH	1293	79083		       64.38	        7.83	rs7584330-C	rs7584330	0	7584330	Intergenic	1	0.22	3E-9	8.522878745280337		   1.06	[1.02-1.09] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	3q23	3	141383991	ZBTB38	ZBTB38			253461			rs6763931-T	rs6763931	0	6763931	intron	0	0.45	2E-8	7.698970004336018		   1.04	[1.01-1.07] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	3q26.2	3	170412314	CLDN11, SKIL	SKIL - CLDN11	6498	5010		       15.47	        6.55	rs10936632-A	rs10936632	0	10936632	Intergenic	1	0.52	7E-22	21.15490195998574		   1.11	[1.08-1.14] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	5p15.33	5	1279913	TERT	TERT			7015			rs2242652-G	rs2242652	0	2242652	intron	0	0.81	3E-24	23.52287874528033		   1.15	[1.11-1.19] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	5p12	5	44365443	FGF10	FGF10			2255			rs2121875-G	rs2121875	0	2121875	intron	0	0.34	4E-8	7.397940008672037		   1.05	[1.02-1.08] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	6p21.33	6	31150734	CCHCR1	CCHCR1			54535			rs130067-G	rs130067	0	130067	missense	0	0.21	3E-8	7.522878745280337		   1.05	[1.02-1.09] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	12q13.12	12	49282227	PRPH	TUBA1C - PRPH	84790	5630		        8.90	       12.79	rs10875943-C	rs10875943	0	10875943	Intergenic	1	0.31	7E-12	11.15490195998574		   1.07	[1.04-1.10] 	NR [2.6 million] (imputed)	N
08/22/2011	21743467	Kote-Jarai Z	07/10/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743467	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 Other ancestry cases, 5,455 Other ancestry controls	Xq12	23	67801708	AR	AR - OPHN1	367	4983		       71.09	      240.64	rs5919432-A	rs5919432	0	5919432	Intergenic	1	0.81	1E-8	8		   1.06	[1.02-1.12] 	NR [2.6 million] (imputed)	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	2q37.3	2	237534583	MLPH	MLPH			79083			rs2292884-G	rs2292884	0	2292884	missense	0	0.25	4E-8	7.397940008672037		   1.14	[1.09-1.19] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	12q13.13	12	52880120	KRT8, EIF4B, TENC1	KRT78 - RPL7P41	196374	100271222		       31.13	        5.60	rs902774-A	rs902774	0	902774	Intergenic	1	0.17	5E-9	8.301029995663981		   1.17	[1.11-1.24] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	3p11.2	3	87192347	Intergenic	LINC00506 - MIR4795	100846978	100616161		       35.28	       33.84	rs7629490-T	rs7629490	0	7629490	Intergenic	1	NR	1E-7	7	(conditioned on rs2660753)	   1.06	[1.04-1.09] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	6q25.3	6	160160342	SLC22A1	SLC22A1 - SLC22A2	6580	6582		        1.23	       56.42	rs651164-G	rs651164	0	651164	Intergenic	1	NR	2E-10	9.698970004336017	(conditioned on rs9364554)	   1.15	[1.10-1.20] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	8	127082911	Intergenic	PRNCR1			101867536			rs13252298-A	rs13252298	0	13252298	ncRNA	0	NR	4E-6	5.397940008672037	(conditioned on 5 SNPs)	   1.12	[1.05-1.18] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	22q13.2	22	43122269	BIK	BIK			638			rs742134-G	rs742134	0	742134	intron	0	NR	6E-6	5.221848749616356	(conditioned on rs5759167)	   1.16	[1.01-1.23] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	8	127310936	Intergenic	LOC101930033			101930033			rs445114-T	rs445114	0	445114	intron	0	NR	5E-7	6.30102999566398		   1.22	[1.12-1.32] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	8	127401060	Intergenic	CCAT2;LOC101930033			101805488;101930033			rs6983267-G	rs6983267	0	6983267	ncRNA;intron	0	NR	9E-6	5.045757490560675		   1.20	[1.11-1.32] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	8	127506309	Intergenic	CASC8 - CASC11	727677	100270680		       24.17	      224.02	rs4242384-C	rs4242384	0	4242384	Intergenic	1	NR	3E-16	15.52287874528034		   1.56	[1.40-1.73] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	10q11.23	10	46046326	MSMB	MSMB			4477			rs10993994-T	rs10993994	0	10993994	nearGene-5	0	NR	5E-6	5.301029995663981		   1.18	[1.10-1.27] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	11q13.3	11	69228491	Intergenic	MIR3164 - MYEOV	100422846	26579		      145.23	       65.66	rs7130881-G	rs7130881	0	7130881	Intergenic	1	NR	9E-9	8.045757490560675		   1.31	[1.20-1.44] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	17q12	17	37741165	TCF2	HNF1B			6928			rs7501939-C	rs7501939	0	7501939	intron	0	NR	2E-6	5.698970004336018		   1.19	[1.11-1.28] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	17q24.3	17	71112612	Intergenic	CASC17			101928165			rs1859962-G	rs1859962	0	1859962	intron	0	NR	3E-11	10.52287874528034		   1.27	[1.18-1.37] 	Illumina [571,243]	N
07/30/2011	21743057	Schumacher FR	07/08/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21743057	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	8q24.21	8	127081052	Intergenic	PRNCR1			101867536			rs1016343-T	rs1016343	0	1016343	ncRNA	0	NR	4E-10	9.397940008672037		   1.31	[1.20-1.42] 	Illumina [571,243]	N
08/03/2011	21750679	Allanore Y	07/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750679	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.33	6	31138491	PSORS1C1	PSORS1C1;PSORS1C2			170679;170680			rs3130573-G	rs3130573	0	3130573	intron;intron	0	0.32	6E-10	9.221848749616356		   1.25	[1.17-1.35] 	Illumina [489,814]	N
08/03/2011	21750679	Allanore Y	07/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750679	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	6p21.32	6	32696074	HLA, DQB1	TRNAI25			100189401			rs6457617-T	rs6457617	0	6457617		0	0.50	2E-37	36.69897000433602		   1.61	[1.49-1.72] 	Illumina [489,814]	N
08/03/2011	21750679	Allanore Y	07/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750679	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	2p24.1	2	20488758	RHOB	RHOB - HS1BP3-IT1	388	100874343		       39.32	      102.02	rs13021401-T	rs13021401	0	13021401	Intergenic	1	0.23	3E-6	5.522878745280337		   1.21	[1.12-1.31] 	Illumina [489,814]	N
08/03/2011	21750679	Allanore Y	07/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750679	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	5q33.1	5	151060536	TNIP1	TNIP1			10318			rs2233287-A	rs2233287	0	2233287	intron	0	0.10	5E-9	8.301029995663981		   1.31	[1.15-1.43] 	Illumina [489,814]	N
08/03/2011	21750679	Allanore Y	07/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750679	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	1q24.2	1	167451188	CD247	CD247			919			rs2056626-T	rs2056626	0	2056626	intron	0	0.61	1E-6	5.999999999999999		   1.20	[1.12-1.30] 	Illumina [489,814]	N
08/03/2011	21750679	Allanore Y	07/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750679	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	0.22	2E-13	12.69897000433602		   1.38	[1.27-1.50] 	Illumina [489,814]	N
08/03/2011	21750679	Allanore Y	07/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21750679	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	7q32.1	7	128954129	TNPO3, IRF5	TNPO3			23534			rs10488631-C	rs10488631	0	10488631	nearGene-3	0	0.09	4E-7	6.397940008672037		   1.35	[1.20-1.51] 	Illumina [489,814]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	1p36.12	1	22371954	RP11-415K20.1, WNT4	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-G	rs7524102	0	7524102	Intergenic	1	0.21	3E-9	8.522878745280337		   1.28	[1.17-1.41] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	6q25.1	6	149441401	ZC3H12D, TAB2	SUMO4 - ZC3H12D	387082	340152		       40.36	        6.23	rs2179367-G	rs2179367	0	2179367	Intergenic	1	0.42	3E-7	6.522878745280337		   1.23	[1.14-1.32] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	7p14.1	7	37949493	EPDR1, SFRP4	EPDR1			54749			rs16879765-A	rs16879765	0	16879765	intron	0	0.19	6E-39	38.22184874961635		   1.98	[1.78-2.18] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	7q31.2	7	117277064	WNT2	WNT2			7472			rs4730775-?	rs4730775	0	4730775	ncRNA	0	0.59	3E-8	7.522878745280337		   1.20	[1.14-1.30] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	8q23.1	8	108215779	EIF3E, RSPO2	EIF3E			3646			rs611744-?	rs611744	0	611744	intron	0	0.60	8E-15	14.09691001300805		   1.33	[1.23-1.43] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	8q13.2	8	69080145	C8orf34, SULF1	LOC100505718			100505718			rs2912522-?	rs2912522	0	2912522	intron	0	0.80	2E-13	12.69897000433602		   1.39	[1.28-1.52] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	9p24.3	9	1202371	RP11-341G2.1, DMRT2	RPS27AP14 - RNA5SP279	100271378	100873532		       37.50	      131.47	rs10809650-?	rs10809650	0	10809650	Intergenic	1	0.76	6E-9	8.221848749616356		   1.25	[1.14-1.35] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	15q26.1	15	88702008	ISG20	ISG20 - ACAN	3669	176		       46.36	      101.43	rs4932194-?	rs4932194	0	4932194	Intergenic	1	0.69	8E-7	6.096910013008056		   1.22	[1.12-1.3] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	17q25.3	17	78885621	AC100788.1, TIMP2	TIMP2			7077			rs4789939-?	rs4789939	0	4789939	intron	0	0.86	6E-7	6.221848749616355		   1.22	[1.11-1.35] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	19q13.43	19	57166826	DUXA, ZNF264	DUXA			503835			rs11672517-A	rs11672517	0	11672517	intron	0	0.28	7E-14	13.15490195998574		   1.34	[1.25-1.45] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	20q12	20	40399796	AL049691.1, MAFB	HSPE1P1 - MAFB	140895	9935		      466.56	      286.05	rs8124695-A	rs8124695	0	8124695	Intergenic	1	0.10	8E-10	9.096910013008054		   1.48	[1.30-1.68] 	Illumina [234,939]	N
03/03/2012	21732829	Dolmans GH	07/06/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21732829	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	22q13.31	22	46025962	RP11-398F12.1, WNT7B	WNT7B - LINC00899	7477	100271722		       48.83	       13.95	rs6519955-A	rs6519955	0	6519955	Intergenic	1	0.47	3E-33	32.52287874528034		   1.54	[1.44-1.65] 	Illumina [234,939]	N
07/29/2011	21755009	Wheeler HE	07/06/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21755009	Genome-wide local ancestry approach identifies genes and variants associated with chemotherapeutic susceptibility in African Americans.	Chemotherapeutic susceptibility	83 African American lymphoblastoid cell lines, 176 African ancestry lymphoblastoid cell lines	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	NR [2,217,232] (imputed)	N
08/03/2011	21729881	Major JM	07/05/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21729881	Genome-wide association study identifies common variants associated with circulating vitamin E levels.	Vitamin E levels	2,402 European ancestry cases, 1612 European ancestry controls	475 European ancestry cases, 517 European ancestry controls, 1,416 Other ancestry cases, 1,359 Other ancestry controls	11q23.3	11	116778201	BUD13, ZNF259, APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.15	8E-12	11.09691001300806		    .04	[0.02-0.06] unit increase	Illumina [NR] (imputed)	N
08/03/2011	21729881	Major JM	07/05/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21729881	Genome-wide association study identifies common variants associated with circulating vitamin E levels.	Vitamin E levels	2,402 European ancestry cases, 1612 European ancestry controls	475 European ancestry cases, 517 European ancestry controls, 1,416 Other ancestry cases, 1,359 Other ancestry controls	19p13.12	19	15879621	CYP4F2	CYP4F2			8529			rs2108622-T	rs2108622	0	2108622	missense	0	0.21	1E-10	10		    .03	[0.01-0.05] unit increase	Illumina [NR] (imputed)	N
08/03/2011	21729881	Major JM	07/05/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21729881	Genome-wide association study identifies common variants associated with circulating vitamin E levels.	Vitamin E levels	2,402 European ancestry cases, 1612 European ancestry controls	475 European ancestry cases, 517 European ancestry controls, 1,416 Other ancestry cases, 1,359 Other ancestry controls	12q24.31	12	124822507	SCARB1	SCARB1			949			rs11057830-A	rs11057830	0	11057830	intron	0	0.15	8E-9	8.096910013008056		    .03	[0.01-0.05] unit increase	Illumina [NR] (imputed)	N
07/29/2011	21750702	Schosser A	07/05/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21750702	Genomewide association scan of suicidal thoughts and behaviour in major depression.	Suicidal ideation	2,023 European ancestry major depressive disorder cases	1,531 European ancestry major depressive disorder cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [532,774]	N
03/13/2012	22303337	Wang K	07/05/2011	Front Genet	http://www.ncbi.nlm.nih.gov/pubmed/22303337	Pathway-Wide Association Study Implicates Multiple Sterol Transport and Metabolism Genes in HDL Cholesterol Regulation.	HDL cholesterol	653 European ancestry high HDL-C individuals, 784 European ancestry low HDL-C individuals	496 European ancestry high HDL-C individuals, 373 European ancestry low HDL-C individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [681,050]	N
08/03/2011	21725308	Hu Z	07/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21725308	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	3q28	3	189638472	TP63	TP63			8626			rs4488809-C	rs4488809	0	4488809	intron	0	0.47	7E-26	25.15490195998574		   1.26	[1.21-1.32] 	Affymetrix [906,703]	N
08/03/2011	21725308	Hu Z	07/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21725308	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-C	rs2736100	0	2736100	intron	0	0.41	1E-27	27		   1.27	[1.22-1.33] 	Affymetrix [906,703]	N
08/03/2011	21725308	Hu Z	07/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21725308	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	13q12.12	13	23719720	MIPEP	TNFRSF19 - MIPEP	55504	4285		       43.62	       10.47	rs753955-G	rs753955	0	753955	Intergenic	1	0.29	2E-12	11.69897000433602		   1.18	[1.13-1.24] 	Affymetrix [906,703]	N
08/03/2011	21725308	Hu Z	07/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21725308	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	22q12.2	22	29941597	MTMR3	MTMR3			8897			rs36600-A	rs36600	0	36600	intron	0	0.09	6E-13	12.22184874961636		   1.29	[1.20-1.38] 	Affymetrix [906,703]	N
07/29/2011	21725309	Miki D	07/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21725309	Variation in the DEPDC5 locus is associated with progression to hepatocellular carcinoma in chronic hepatitis C virus carriers.	Chronic hepatitis C infection	212 Japanese ancestry chronic hepatitis C with hepatocellular carcinoma cases, 765 Japanese ancestry chronic hepatitis C without hepatocellular carcinoma cases	710 Japanses ancestry chronic hepatitis C with hepatocellular carcinoma cases, 1,625 Japanese ancestry chronic hepatitis C without hepatocellular carcinoma cases	22q12.3	22	31869917	DEPDC5	DEPDC5			9681			rs1012068-G	rs1012068	0	1012068	intron	0	0.12	1E-13	13		   1.75	[1.51-2.03] 	Illumina [467,538]	N
07/08/2011	21694509	Janicki PK	07/01/2011	Anesthesiology	http://www.ncbi.nlm.nih.gov/pubmed/21694509	Genome-wide Association study using pooled DNA to identify candidate markers mediating susceptibility to postoperative nausea and vomiting.	Postoperative nausea and vomiting 	122 European ancestry cases, 129 European ancestry controls	104 European ancestry cases, 104 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [NR] (pooled)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	3q21.3	3	128597592	LOC90246,C3orf27,RPN1	C3orf27 - RPN1	23434	6184		       21.51	       22.38	rs4328821-A	rs4328821	0	4328821	Intergenic	1	NR	4E-13	12.39794000867204	(Basophils)	    .01	[0.0073-0.0127] unit increase	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	6	31274397	PSORS1C3,HCG27,HLA-C, HLA-B	 - 						rs2524079-A	rs2524079	0	2524079	Intergenic	1	NR	1E-11	11	(Lymphocytes)	    .01	[0.010-0.019] unit increase	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	19p13.11	19	16437564	C19orf44,EPS15L1,CALR3	EPS15L1			58513			rs10411936-A	rs10411936	0	10411936	intron	0	NR	3E-12	11.52287874528034	(Lymphocytes)	    .02	[0.011-0.020] unit increase	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	2q31.3	2	181454574	ITGA4,CERKL	MIR4437 - ITGA4	100616213	3676		      148.92	        2.32	rs1449263-T	rs1449263	0	1449263	Intergenic	1	NR	3E-23	22.52287874528034	(Monocytes)	    .04	[0.029-0.044] unit increase	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	3q21.3	3	128578726	GATA2,LOC90246,C3orf27,RPN1	C3orf27 - RPN1	23434	6184		        2.64	       41.24	rs9880192-C	rs9880192	0	9880192	Intergenic	1	NR	6E-13	12.22184874961636	(Monocytes)	    .03	[0.020-0.036] unit decrease	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	8q24.21	8	129601368	MLZE,FAM49B	MIR3686 - GSDMC	100500839	56169		      117.23	      146.83	rs10098310-A	rs10098310	0	10098310	Intergenic	1	NR	3E-20	19.52287874528034	(Monocytes)	    .03	[0.027-0.041] unit decrease	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	9q31.3	9	111153625	EDG2,OR2K2	RNY4P18 - MIR7702	100379298	102465800		       56.21	      117.53	rs10980800-T	rs10980800	0	10980800	Intergenic	1	NR	2E-22	21.69897000433602	(Monocytes)	    .04	[0.034-0.050] unit decrease	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	17q21.1	17	40010626	GSDMB,ORMDL3,GSDMA,PSMD3,CSF3,MED24,SNORD124,THRA,NR1D1	PSMD3 - CSF3	5709	1440		       12.67	        4.74	rs8078723-T	rs8078723	0	8078723	Intergenic	1	NR	2E-31	30.69897000433602	(Neutrophils)	    .04	[0.034-0.048] unit decrease	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	6p21.33	6	31062345	MUC21,HCG22,C6orf15,CDSN,PSORS1C1,PSORS1C2,CCHCR1	TRNAI25			100189401			rs2517510-T	rs2517510	0	2517510		0	NR	4E-13	12.39794000867204	(WBC)	    .01	[0.0094-0.0164] unit decrease	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/21/2013	21738480	Nalls MA	07/01/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738480	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	17q21.1	17	40000459	CSF3, PSMD3, GSDM1, MED24, GSDMB, ORMDL3, GSDMA, SNORD124, THRA, NR1D1	PSMD3 - CSF3	5709	1440		        2.50	       14.90	rs4794822-T	rs4794822	0	4794822	Intergenic	1	NR	9E-35	34.04575749056067	(WBC)	    .02	[0.018-0.025] unit increase	Illumina & Affymetrix [>2.4 million](Imputed)	N
08/06/2011	21787189	Nyberg F	07/01/2011	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/21787189	Interstitial lung disease in gefitinib-treated Japanese patients with non-small-cell lung cancer: genome-wide analysis of genetic data.	Interstitial lung disease 	80 Japanese ancestry cases, 194 Japanese ancestry controls	NA	5q33.1	5	151964997	Intergenic	RNA5SP198 - CTB-12O2.1	100873460	101927115		       89.31	      302.27	rs170020-C	rs170020	0	170020	Intergenic	1	NR	4E-6	5.397940008672037		   2.96	[1.80-.5.00] 	Illumina & Perlgen [465,816]	N
08/06/2011	21787189	Nyberg F	07/01/2011	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/21787189	Interstitial lung disease in gefitinib-treated Japanese patients with non-small-cell lung cancer: genome-wide analysis of genetic data.	Interstitial lung disease 	80 Japanese ancestry cases, 194 Japanese ancestry controls	NA	1q23.2	1	159783393	DUSP23	DUSP23 - FCRL6	54935	343413		         .85	       17.10	rs4233356-T	rs4233356	0	4233356	Intergenic	1	NR	9E-6	5.045757490560675		   2.51	[1.64-3.84] 	Illumina & Perlgen [465,816]	N
07/19/2011	21738491	Arking DE	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738491	Identification of a sudden cardiac death susceptibility locus at 2q24.2 through genome-wide association in European ancestry individuals.	Sudden cardiac arrest	1,283 European ancestry cases, ~20,000 European ancestry controls	3,119 European ancestry cases, 11,146 European ancestry controls	2q24.2	2	159333698	BAZ2B	BAZ2B			29994			rs4665058-A	rs4665058	0	4665058	intron	0	0.014	2E-10	9.698970004336017		   1.92	[1.57-2.34] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	7q21.2	7	92779056	CDK6	CDK6			1021			rs445-C	rs445	0	445	intron	0	0.69	7E-10	9.154901959985741	(neutrophil count)	    .08	[0.06-0.10] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	17q21.1	17	40000459	PSMD3, CSF3	PSMD3 - CSF3	5709	1440		        2.50	       14.90	rs4794822-T	rs4794822	0	4794822	Intergenic	1	0.52	4E-16	15.39794000867204	(neutrophil count)	    .09	[0.07-0.11] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	2q31.3	2	181458938	ITGA4	ITGA4			3676			rs12988934-T	rs12988934	0	12988934	intron	0	0.27	2E-14	13.69897000433602	(monocyte count)	    .11	[0.08-0.14] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	6	31253891	MHC	TRNAI25			100189401			rs3095254-C	rs3095254	0	3095254		0	0.46	6E-11	10.22184874961635	(monocyte count)	    .07	[0.05-0.09] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	8q24.21	8	129559864	MLZE	MIR3686 - GSDMC	100500839	56169		       75.72	      188.33	rs10956483-C	rs10956483	0	10956483	Intergenic	1	0.44	2E-10	9.698970004336017	(monocyte count)	    .07	[0.05-0.09] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	14q12	14	25034593	STXBP6	STXBP6			29091			rs10147992-G	rs10147992	0	10147992	intron	0	0.47	1E-8	8	(monocyte count)	    .06	[0.04-0.08] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	1q32.1	1	205707135	SLC45A3, NUKS1	SLC45A3 - NUCKS1	85414	64710		       26.63	        5.68	rs12748961-T	rs12748961	0	12748961	Intergenic	1	0.51	4E-8	7.397940008672037	(basophil count)	    .06	[0.04-0.08] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	3q21.3	3	128597592	GATA2	C3orf27 - RPN1	23434	6184		       21.51	       22.38	rs4328821-A	rs4328821	0	4328821	Intergenic	1	0.66	5E-40	39.30102999566397	(basophil count)	    .16	[0.14-0.18] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	11q14.3	11	90142269	NAALAD2	NAALAD2			10003			rs11018874-G	rs11018874	0	11018874	intron	0	0.69	2E-9	8.698970004336019	(basophil count)	    .08	[0.05-0.11] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	21q22.2	21	38480628	ERG	ERG			2078			rs7275212-T	rs7275212	0	7275212	intron	0	0.08	2E-18	17.69897000433602	(basophil count)	    .20	[0.16-0.24] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	3q21.3	3	128597592	GATA2	C3orf27 - RPN1	23434	6184		       21.51	       22.38	rs4328821-A	rs4328821	0	4328821	Intergenic	1	0.66	3E-17	16.52287874528034	(eosinophil count)	    .10	[0.08-0.12] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6p21.33	6	31513522	MHC	TRNAI25			100189401			rs2516399-A	rs2516399	0	2516399		0	0.81	2E-12	11.69897000433602	(eosinophil count)	    .11	[0.08-0.14] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	6q23.3	6	135102071	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      122.64	       79.24	rs9373124-T	rs9373124	0	9373124	Intergenic	1	0.65	1E-10	10	(eosinophil count)	    .08	[0.06-0.10] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	2q13	2	111078961	ACOXL	ACOXL			55289			rs7578982-T	rs7578982	0	7578982	intron	0	0.55	4E-7	6.397940008672037	(monocyte count)	    .05	[0.03-0.07] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	20q13.31	20	57063481	BMP7	PTMAP6 - BMP7	170542	655		      361.97	      105.27	rs331615-T	rs331615	0	331615	Intergenic	1	0.37	9E-7	6.045757490560675	(eosinophil count)	    .06	[0.04-0.08] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	4q13.3	4	74090655	CXCL2	PPBPP2 - CXCL2	10895	2920		       35.26	        6.38	rs546829-A	rs546829	0	546829	Intergenic	1	0.43	3E-7	6.522878745280337	(neutrophil count)	    .06	[0.04-0.08] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	1p22.3	1	87239348	LMO4	LOC101927844			101927844			rs6576878-G	rs6576878	0	6576878	intron	0	0.43	6E-6	5.221848749616356	(eosinophil count)	    .05	[0.03-0.07] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	18p11.31	18	4773111	Intergenic	DLGAP1-AS5 - PPIAP14	284215	5486		      477.11	      229.40	rs7237848-T	rs7237848	0	7237848	Intergenic	1	0.33	2E-7	6.698970004336019	(lymphocyte count)	    .07	[0.04-0.10] unit increase	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	2q12.1	2	102475081	SLC9A4	SLC9A4			389015			rs17027258-G	rs17027258	0	17027258	intron	0	0.37	7E-6	5.154901959985742	(eosinophil count)	    .06	[0.04-0.08] unit decrease	Illumina [2,178,645] (imputed)	N
07/21/2011	21738478	Okada Y	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738478	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	1p36.31	1	6571371	TAS1R1	TAS1R1			80835			rs11587438-T	rs11587438	0	11587438	intron	0	0.83	4E-6	5.397940008672037	(basophil count)	    .08	[0.05-0.11] unit increase	Illumina [2,178,645] (imputed)	N
07/27/2011	21738479	Reiner AP	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738479	Genome-wide association study of white blood cell count in 16,388 African Americans: the continental origins and genetic epidemiology network (COGENT).	White blood cell count	16,388 African American individuals	3,551 Hispanic individuals, 14,767 Japanese ancestry individuals, 19,509 European ancestry individuals	7q21.2	7	92779056	CDK6	CDK6			1021			rs445-T	rs445	0	445	intron	0	0.19	4E-7	6.397940008672037		    .03	[0.02-0.04] liter decrease	Affymetrix & Illumina [2,489,215] (imputed)	N
07/27/2011	21738479	Reiner AP	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738479	Genome-wide association study of white blood cell count in 16,388 African Americans: the continental origins and genetic epidemiology network (COGENT).	White blood cell count	16,388 African American individuals	3,551 Hispanic individuals, 14,767 Japanese ancestry individuals, 19,509 European ancestry individuals	4q13.3	4	74112120	CXCL2	CXCL2 - MTHFD2L	2920	441024		       12.84	       11.18	rs1371799-?	rs1371799	0	1371799	Intergenic	1	NR	2E-17	16.69897000433602		NR	NR	Affymetrix & Illumina [2,489,215] (imputed)	N
07/27/2011	21738484	Smith EN	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738484	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	1p32.1	1	60593587	NFIA	PGBD4P8 - NFIA	100421185	4774		      495.61	      483.69	rs2989476-C	rs2989476	0	2989476	Intergenic	1	NR	3E-6	5.522878745280337		   1.16	[NR] 	Affymetrix [703,019]	N
07/27/2011	21738484	Smith EN	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738484	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	2q11.2	2	98623468	MGAT4A	MGAT4A			11320			rs12618769-T	rs12618769	0	12618769	intron	0	NR	1E-6	5.999999999999999		   1.25	[NR] 	Affymetrix [703,019]	N
07/27/2011	21738484	Smith EN	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738484	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	6q25.2	6	152470339	SYNE1	SYNE1			23345			rs7747960-A	rs7747960	0	7747960	intron	0	NR	9E-6	5.045757490560675		   1.23	[NR] 	Affymetrix [703,019]	N
07/27/2011	21738484	Smith EN	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738484	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	13q12.12	13	23118839	SGCG	NUS1P2 - HMGA1P6	646208	100130029		      201.49	       15.33	rs4770394-A	rs4770394	0	4770394	Intergenic	1	NR	9E-6	5.045757490560675		   1.59	[NR] 	Affymetrix [703,019]	N
07/27/2011	21738484	Smith EN	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738484	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	14q11.2	14	21257495	HNRNPC	HNRNPC			3183			rs17197037-A	rs17197037	0	17197037	intron	0	NR	2E-6	5.698970004336018		   1.17	[NR] 	Affymetrix [703,019]	N
07/27/2011	21738484	Smith EN	06/30/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738484	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	15q24.1	15	73720096	CD276	CD276 - C15orf59	80381	388135		        5.58	       15.34	rs1038094-G	rs1038094	0	1038094	Intergenic	1	NR	9E-6	5.045757490560675		   1.27	[NR] 	Affymetrix [703,019]	N
07/20/2011	21740922	Nebel A	06/29/2011	Mech Ageing Dev	http://www.ncbi.nlm.nih.gov/pubmed/21740922	A genome-wide association study confirms APOE as the major gene influencing survival in long-lived individuals.	Longevity	763 European ancestry individuals, 1,058 European ancestry individuals	754 European ancestry individuals, 860 European ancestry individuals	19q13.32	19	44919689	APOC1	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	0.81	2E-16	15.69897000433602		NR	NR	Affymetrix [664,472]	N
07/19/2011	21708048	Jiao H	06/28/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21708048	Genome wide association study identifies KCNMA1 contributing to human obesity.	Obesity	164 European ancestry morbidly obese  individuals, 163 European ancestry lean individuals	4,674 European ancestry morbidly obese individuals, 5,663 European ancestry lean individuals	10q22.3	10	76886778	KCNMA1	KCNMA1;LOC101929328			3778;101929328			rs2116830-G	rs2116830	0	2116830	intron;nearGene-5	0	0.80	3E-10	9.522878745280336		   1.26	[1.12-1.41] 	Affymetrix [406,177]	N
07/19/2011	21708048	Jiao H	06/28/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21708048	Genome wide association study identifies KCNMA1 contributing to human obesity.	Obesity	164 European ancestry morbidly obese  individuals, 163 European ancestry lean individuals	4,674 European ancestry morbidly obese individuals, 5,663 European ancestry lean individuals	11p14.1	11	27541835	BDNF	BDNF-AS			497258			rs988712-G	rs988712	0	988712	intron	0	0.75	5E-17	16.30102999566398		   1.36	[1.20-1.55] 	Affymetrix [406,177]	N
07/08/2011	21706003	Kilpelainen TO	06/26/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21706003	Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.	Adiposity	29,069 European ancestry individuals, 7,557 Indian Asian ancestry individuals	39,576 European ancestry individuals	2q36.3	2	226241205	IRS1	NYAP2 - MIR5702	57624	100847053		      587.19	      417.51	rs2943650-T	rs2943650	0	2943650	Intergenic	1	0.64	4E-11	10.39794000867204		    .03	[NR] % decrease	Affymetrix, Illumina, and Perlegen [~2.5 million] (imputed)	N
07/08/2011	21706003	Kilpelainen TO	06/26/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21706003	Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.	Adiposity	29,069 European ancestry individuals, 7,557 Indian Asian ancestry individuals	39,576 European ancestry individuals	13q31.1	13	80385072	SPRY2	SPRY2 - HNRNPA1P31	10253	100506925		       44.10	      233.70	rs534870-A	rs534870	0	534870	Intergenic	1	0.68	7E-8	7.154901959985742		    .03	[NR] % decrease	Affymetrix, Illumina, and Perlegen [~2.5 million] (imputed)	N
07/08/2011	21706003	Kilpelainen TO	06/26/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21706003	Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.	Adiposity	29,069 European ancestry individuals, 7,557 Indian Asian ancestry individuals	39,576 European ancestry individuals	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-C	rs8050136	0	8050136	intron	0	0.60	3E-26	25.52287874528034		    .06	[NR] % decrease	Affymetrix, Illumina, and Perlegen [~2.5 million] (imputed)	N
07/20/2011	21706340	Teerlink C	06/26/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21706340	A unique genome-wide association analysis in extended Utah high-risk pedigrees identifies a novel melanoma risk variant on chromosome arm 10q.	Melanoma	156 European ancestry cases from 34 high-risk families, 2,150 European ancestry controls	NA	10q25.1	10	105756594	NR	YWHAZP5 - RPL23AP59	86123	100271618		       66.87	      793.51	rs17119461-?	rs17119461	0	17119461	Intergenic	1	0.04	7E-12	11.15490195998574		   8.40	[4.20-17.0] 	Illumina [491,227]	N
04/24/2013	21705454	Huang RS	06/24/2011	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/21705454	Platinum sensitivity-related germline polymorphism discovered via a cell-based approach and analysis of its association with outcome in ovarian cancer patients.	Response to platinum-based agents	87 European ancestry lymphoblastoid cell lines	52 European ancestry lymphoblastoid cell lines	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	NR [2,286,186]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	12q12	12	40340400	LRRK2	LRRK2			120892			rs34637584-A	rs34637584	0	34637584	missense	0	0.002	2E-28	27.69897000433602		   9.62	[6.43-14.37] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	NR			GBA	 - 						i4000416-C	i4000416					0.005	5E-21			   4.05	[3.08-5.32] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	4q22.1	4	89720189	SNCA	GPRIN3 - SNCA	285513	6622		      412.18	        3.91	rs356220-T	rs356220	0	356220	Intergenic	1	0.375	2E-19	18.69897000433602		   1.29	[1.22-1.36] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	17q21.31	17	45846317	MAPT	SPPL2C;MAPT-AS1			162540;100128977			rs12185268-A	rs12185268	0	12185268	missense;intron	0	0.79	3E-14	13.52287874528034		   1.30	[1.22-1.39] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	3q27.1	3	183042285	MCCC1, LAMP3	MCCC1			56922			rs10513789-T	rs10513789	0	10513789	intron	0	0.80	3E-10	9.522878745280336		   1.25	[1.16-1.33] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	4q21.1	4	76277833	SCARB2	FAM47E;FAM47E-STBD1			100129583;100631383			rs6812193-C	rs6812193	0	6812193	intron;intron	0	0.64	8E-10	9.096910013008054		   1.19	[1.12-1.27] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	4p16.3	4	945325	GAK	TMEM175			84286			rs6599389-A	rs6599389	0	6599389	intron	0	0.075	4E-8	7.397940008672037		   1.31	[1.19-1.44] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	17p11.2	17	17811787	SREBF1, RAI1	SREBF1;RAI1			6720;10743			rs11868035-G	rs11868035	0	11868035	intron;nearGene-3	0	0.69	6E-8	7.221848749616355		   1.18	[1.11-1.25] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	1q32.1	1	205795512	SLC41A1	SLC41A1			254428			rs823156-A	rs823156	0	823156	intron	0	0.82	1E-7	7		   1.21	[1.12-1.30] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	18q12.3	18	43098270	RIT2, SYT4	RIT2			6014			rs4130047-C	rs4130047	0	4130047	intron	0	0.31	2E-7	6.698970004336019		   1.16	[1.10-1.23] 	Illumina [522,782]	N
07/20/2011	21738487	Do CB	06/23/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21738487	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	21q21.1	21	15542586	USP25	CYCSP42 - RAD23BLP	343727	54034		       51.80	      151.71	rs2823357-A	rs2823357	0	2823357	Intergenic	1	0.38	6E-7	6.221848749616355		   1.15	[1.09-1.21] 	Illumina [522,782]	N
07/14/2011	21701565	Malhotra A	06/23/2011	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/21701565	A genome-wide association study of BMI in American Indians.	Body mass index	1,120 Pima Indians ancestry individuals	2,133 Pima Indians ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [454,194]	N
07/13/2011	21700618	Nan H	06/23/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700618	Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma.	Basal cell carcinoma 	2,045 European ancestry cases, 6,013 European ancestry controls	1,426 cases, 4,845 controls	13q32.3	13	99389484	UBAC2	HMGB3P4 - CCR12P	100873890	100133168		       16.80	       18.44	rs7335046-G	rs7335046	0	7335046	Intergenic	1	0.12	3E-8	7.522878745280337		   1.26	[1.18-1.34] 	Affymetrix & Illumina [2,318,094] (imputed)	N
07/13/2011	21700618	Nan H	06/23/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700618	Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma.	Basal cell carcinoma 	2,045 European ancestry cases, 6,013 European ancestry controls	1,426 cases, 4,845 controls	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-T	rs1805007	0	1805007	missense	0	0.07	4E-17	16.39794000867203		   1.55	[1.45-1.66] 	Affymetrix & Illumina [2,318,094] (imputed)	N
07/13/2011	21700618	Nan H	06/23/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700618	Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma.	Basal cell carcinoma 	2,045 European ancestry cases, 6,013 European ancestry controls	1,426 cases, 4,845 controls	6p25.3	6	475489	EXOC2	IRF4 - EXOC2	3662	55770		       64.05	        9.65	rs12210050-T	rs12210050	0	12210050	Intergenic	1	0.17	1E-9	8.999999999999998		   1.24	[1.17-1.31] 	Affymetrix & Illumina [2,318,094] (imputed)	N
07/13/2011	21701570	Ng MC	06/23/2011	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/21701570	Genome-wide association of BMI in African Americans.	Body mass index	1,715 African American individuals	3,274 African American individuals	3q26.31	3	171840554	PP13439, TMEM212	PLD1 - TMEM212	5337	389177		       30.06	        2.80	rs6794092-G	rs6794092	0	6794092	Intergenic	1	0.90	2E-6	5.698970004336018		    .17	[0.10-0.24] s.d. increase	Affymetrix [746,626]	N
07/13/2011	21701570	Ng MC	06/23/2011	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/21701570	Genome-wide association of BMI in African Americans.	Body mass index	1,715 African American individuals	3,274 African American individuals	5q33.2	5	154130036	MFAP3, GALNT10	LOC101927169			101927169			rs2033195-C	rs2033195	0	2033195	intron	0	0.57	6E-6	5.221848749616356		    .09	[0.05-0.13] s.d. increase	Affymetrix [746,626]	N
07/13/2011	21700879	Qi L	06/23/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21700879	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry females	626 European ancestry individuals from 235 families	5q14.1	5	79549888	PAPD4	RPL7AP32 - PAPD4	133748	167153		       19.74	       62.53	rs13358260-C	rs13358260	0	13358260	Intergenic	1	0.93	5E-6	5.301029995663981		NR	NR	Affymetrix [2,543,887] (imputed)	N
07/13/2011	21700879	Qi L	06/23/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21700879	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry females	626 European ancestry individuals from 235 families	4p12	4	45362897	AC108043.3-1	PRKRIRP9 - GABRG1	100131309	2565		       36.87	      672.87	rs10517133-C	rs10517133	0	10517133	Intergenic	1	0.90	5E-6	5.301029995663981		NR	NR	Affymetrix [2,543,887] (imputed)	N
07/13/2011	21700879	Qi L	06/23/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21700879	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry females	626 European ancestry individuals from 235 families	5q21.3	5	108580035	FER	FBXL17 - RPS20P3	64839	6225		      197.47	       13.45	rs10447248-A	rs10447248	0	10447248	Intergenic	1	0.34	5E-8	7.30102999566398		NR	NR	Affymetrix [2,543,887] (imputed)	N
07/13/2011	21700879	Qi L	06/23/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21700879	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry females	626 European ancestry individuals from 235 families	8q24.3	8	139507274	KCNK9	COL22A1 - KCNK9	169044	51305		      593.28	       93.56	rs2468677-G	rs2468677	0	2468677	Intergenic	1	0.52	8E-7	6.096910013008056		NR	NR	Affymetrix [2,543,887] (imputed)	N
07/13/2011	21700879	Qi L	06/23/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21700879	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry females	626 European ancestry individuals from 235 families	3q27.3	3	186762417	ADIPOQ	PSMD10P2			280644			rs822354-A	rs822354	0	822354		0	0.68	4E-8	7.397940008672037		NR	NR	Affymetrix [2,543,887] (imputed)	N
07/13/2011	21700265	Kullo IJ	06/22/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700265	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1q32.2	1	207630250	CR1	CR1			1378			rs12034383-G	rs12034383	0	12034383	intron	0	0.41	2E-28	27.69897000433602		    .13	[NR] unit decrease	Illumina [476,395]	N
07/13/2011	21700265	Kullo IJ	06/22/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700265	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1p36.11	1	25243590	C1orf63	RSRP1			57035			rs1043879-?	rs1043879	0	1043879	missense	0	NR	2E-9	8.698970004336019		    .09	[NR] unit decrease	Illumina [476,395]	N
07/13/2011	21700265	Kullo IJ	06/22/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700265	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1p36.11	1	25348294	TMEM50A	TMEM50A			23585			rs3091242-?	rs3091242	0	3091242	intron	0	NR	2E-13	12.69897000433602		    .10	[NR] unit decrease	Illumina [476,395]	N
07/13/2011	21700265	Kullo IJ	06/22/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700265	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1p36.11	1	25442446	TMEM57	TMEM57			55219			rs10903129-?	rs10903129	0	10903129	intron	0	NR	5E-13	12.30102999566398		    .10	[NR] unit decrease	Illumina [476,395]	N
07/13/2011	21700265	Kullo IJ	06/22/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21700265	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1q32.2	1	207698945	CR1L	CR1L			1379			rs7527798-?	rs7527798	0	7527798	intron	0	NR	2E-9	8.698970004336019		    .10	[NR] unit increase	Illumina [476,395]	N
07/14/2011	21703634	Wang KS	06/22/2011	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/21703634	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Alcohol dependence	1,283 European ancestry cases, 1,416 European ancestry controls	1,650 European ancestry cases and 1,684 European ancestry controls from 778 nuclear families	1q25.1	1	175150943	KIAA0040	TNN - KIAA0040	63923	9674		        2.88	        6.04	rs6701037-C	rs6701037	0	6701037	Intergenic	1	0.46	2E-7	6.698970004336019		NR	NR	Illumina [up to 818,773]	N
07/14/2011	21703634	Wang KS	06/22/2011	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/21703634	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Alcohol dependence	1,283 European ancestry cases, 1,416 European ancestry controls	1,650 European ancestry cases and 1,684 European ancestry controls from 778 nuclear families	11q24.2	11	125302697	PKNOX2	PKNOX2			63876			rs750338-C	rs750338	0	750338	intron	0	0.22	1E-6	5.999999999999999		NR	NR	Illumina [up to 818,773]	N
07/08/2011	21682944	Alkelai A	06/20/2011	Int J Neuropsychopharmacol	http://www.ncbi.nlm.nih.gov/pubmed/21682944	DOCK4 and CEACAM21 as novel schizophrenia candidate genes in the Jewish population.	Schizophrenia	155 Jewish-Israeli ancestry cases and 176 Jewish-Israeli ancestry controls from 107 families	99 Arab-Israeli ancestry cases and 99 Arab-Israeli ancestry controls from 57 families	10p11.22	10	33799125	NRP1, PARD3	LINC00838 - RPL23P11	100505583	100271297		       26.45	       65.19	rs1412115-?	rs1412115	0	1412115	Intergenic	1	0.37	6E-6	5.221848749616356		NR	NR	Illumina [311,517]	N
07/08/2011	21682944	Alkelai A	06/20/2011	Int J Neuropsychopharmacol	http://www.ncbi.nlm.nih.gov/pubmed/21682944	DOCK4 and CEACAM21 as novel schizophrenia candidate genes in the Jewish population.	Schizophrenia	155 Jewish-Israeli ancestry cases and 176 Jewish-Israeli ancestry controls from 107 families	99 Arab-Israeli ancestry cases and 99 Arab-Israeli ancestry controls from 57 families	19q13.2	19	41559909	ATP5SL, CEACAM21	CEACAM21			90273			rs4803480-A	rs4803480	0	4803480	intron	0	0.13	1E-7	7		NR	NR	Illumina [311,517]	N
07/12/2011	21699788	Okada Y	06/20/2011	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/21699788	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Inflammatory bowel disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases, 905 Japanese ancestry controls	6p21.32	6	32619077	MHC	TRNAI25			100189401			rs9271366-C	rs9271366	0	9271366		0	0.21	2E-70	69.69897000433602	(UC vs. CD)	   4.44	[3.74-5.27] 	Illumina [461,368]	N
07/12/2011	21699788	Okada Y	06/20/2011	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/21699788	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Inflammatory bowel disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases, 905 Japanese ancestry controls	6p21.32	6	32619077	MHC	TRNAI25			100189401			rs9271366-C	rs9271366	0	9271366		0	0.21	3E-31	30.52287874528034	(UC vs. Control)	   2.41	[2.07-2.81] 	Illumina [461,368]	N
07/12/2011	21699788	Okada Y	06/20/2011	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/21699788	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Inflammatory bowel disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases, 905 Japanese ancestry controls	6p21.32	6	32619077	MHC	TRNAI25			100189401			rs9271366-T	rs9271366	0	9271366		0	0.79	8E-11	10.09691001300805	(CD vs. Control)	   1.79	[1.49-2.13] 	Illumina [461,368]	N
07/12/2011	21699788	Okada Y	06/20/2011	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/21699788	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Inflammatory bowel disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases, 905 Japanese ancestry controls	9q32	9	114830358	TNFSF15	TNFSF15 - TNFSF8	9966	944		       24.23	       62.99	rs2006996-T	rs2006996	0	2006996	Intergenic	1	0.47	4E-13	12.39794000867204	(UC vs. CD)	   1.67	[1.47-1.92] 	Illumina [461,368]	N
07/12/2011	21699788	Okada Y	06/20/2011	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/21699788	HLA-Cw*1202-B*5201-DRB1*1502 haplotype increases risk for ulcerative colitis but reduces risk for Crohn's disease.	Inflammatory bowel disease	372 Japanese ancestry Crohn's disease cases, 372 Japanese ancestry ulcerative colitis cases	607 Japanese ancestry Crohn's disease cases, 376 Japanese ancestry ulcerative colitis cases, 905 Japanese ancestry controls	9q32	9	114830358	TNFSF15	TNFSF15 - TNFSF8	9966	944		       24.23	       62.99	rs2006996-C	rs2006996	0	2006996	Intergenic	1	0.53	4E-16	15.39794000867204	(CD vs. Control)	   1.75	[1.53-1.99] 	Illumina [461,368]	N
07/13/2011	21696813	Schauberger EM	06/20/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/21696813	Identification of ATPAF1 as a novel candidate gene for asthma in children.	Asthma	112 European ancestry child cases, 165 European ancestry child controls	1,481 European ancestry individuals from 341 families, 429 European ancestry trios, 52 African American trios, 1,331 Hispanic trios, 46 Other ancestry trios, 6,475 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [98,921] (pooled)	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	1q25.3	1	180993146	STX6	STX6			10228			rs1411478-?	rs1411478	0	1411478	intron	0	0.58	4E-11	10.39794000867204		   1.27	[1.19-1.37] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	2p11.2	2	88595833	EIF2AK3	EIF2AK3			9451			rs7571971-?	rs7571971	0	7571971	intron	0	0.74	4E-13	12.39794000867204		   1.33	[1.22-1.43] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	3p22.1	3	39481512	MOBP	MOBP			4336			rs1768208-?	rs1768208	0	1768208	intron	0	0.71	5E-17	16.30102999566398		   1.37	[1.28-1.49] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	17q21.31	17	46003698	MAPT	MAPT			4137			rs8070723-?	rs8070723	0	8070723	intron	0	0.23	2E-118	117.698970004336		   5.11	[4.43-5.91] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	1q41	1	221991606	Intergenic	DUSP10 - QRSL1P2	11221	100422330		      249.43	      270.23	rs6687758-?	rs6687758	0	6687758	Intergenic	1	0.81	6E-8	7.221848749616355		   1.27	[1.16-1.39] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	10q11.21	10	42845657	BMS1	BMS1 - MIR5100	9790	100847014		       10.72	      151.91	rs2142991-?	rs2142991	0	2142991	Intergenic	1	0.17	3E-7	6.522878745280337		   1.30	[1.18-1.44] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	12p12.1	12	21304500	SLCO1A2	SLCO1A2			6579			rs11568563-?	rs11568563	0	11568563	missense	0	0.95	7E-8	7.154901959985742		   1.47	[1.28-1.69] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	4q27	4	122557561	IL2, IL21	IL2 - IL21	3558	59067		      101.07	       55.07	rs6852535-?	rs6852535	0	6852535	Intergenic	1	0.34	1E-7	7		   1.23	[1.13-1.32] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-?	rs12203592	0	12203592	intron	0	0.19	6E-15	14.22184874961635		   1.48	[1.34-1.63] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	2p11.2	2	86817193	CD8B	CD8B			926			rs6547705-?	rs6547705	0	6547705	intron	0	0.23	1E-8	8	(controlling for rs7571971)	   1.28	[1.18-1.40] 	Illumina [531,451]	N
07/14/2011	21685912	Hoglinger GU	06/19/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21685912	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 Other ancestry controls	1,051 European ancestry cases, 3,560 European ancestry controls	17q21.31	17	45942346	MAPT	MAPT			4137			rs242557-?	rs242557	0	242557	intron	0	0.35	9E-18	17.04575749056067	(controlling for rs8070723)	   1.43	[1.32-1.54] 	Illumina [531,451]	N
07/08/2011	21681796	Fornage M	06/16/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/21681796	Genome-wide association studies of cerebral white matter lesion burden: the CHARGE consortium.	White matter hyperintensity burden	9,361 European ancestry individuals	3,024 European ancestry individuals	17q25.1	17	75892591	TRIM65	TRIM65			201292			rs3744028-C	rs3744028	0	3744028	intron	0	0.18	4E-15	14.39794000867204		NR	NR	Affymetrix & Illumina [2,153,274] (imputed)	N
07/08/2011	21681796	Fornage M	06/16/2011	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/21681796	Genome-wide association studies of cerebral white matter lesion burden: the CHARGE consortium.	White matter hyperintensity burden	9,361 European ancestry individuals	3,024 European ancestry individuals	17q25.1	17	75876867	TRIM47	TRIM47			91107			rs1055129-G	rs1055129	0	1055129	intron	0	0.30	3E-11	10.52287874528034		NR	NR	Affymetrix & Illumina [2,153,274] (imputed)	N
07/12/2011	21698141	Freedman BI	06/16/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21698141	Differential effects of MYH9 and APOL1 risk variants on FRMD3 Association with Diabetic ESRD in African Americans.	End-stage renal disease	952 African American cases, 988 African American controls	640 African American cases, 683 African American controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [832,357]	N
07/08/2011	21679298	Ma X	06/16/2011	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/21679298	A genome-wide association study for quantitative traits in schizophrenia in China.	Schizophrenia	98 Chinese ancestry cases, 60 Chinese ancestry controls	NA	8p23.1	8	10165428	MSRA	MSRA			4482			rs7017212-?	rs7017212	0	7017212	intron	0	.41	4E-6	5.397940008672037		NR	NR	Illumina [464,301]	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	6p21.32	6	33497705	ZBTB9	TRNAI25			100189401			rs9394152-C	rs9394152	0	9394152		0	0.41	7E-8	7.154901959985742	(Age at smoking initiation)	  22.22	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	2q21.1	2	129710793	Intergenic	ISCA1P6 - RPL22P7	100130549	100129819		     1191.54	      229.06	rs10928927-C	rs10928927	0	10928927	Intergenic	1	0.16	3E-7	6.522878745280337	(Age at smoking initiation)	  17.54	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	6p25.1	6	4874525	CDYL	CDYL			9425			rs73717741-G	rs73717741	0	73717741	intron	0	0.07	3E-7	6.522878745280337	(Age at smoking initiation)	  11.90	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	6p21.32	6	33510719	Intergenic	TRNAI25			100189401			rs9296092-?	rs9296092	0	9296092		0	NR	6E-7	6.221848749616355	(Age at smoking initiation)	NR	NR	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	4q27	4	121686023	ANXA5	ANXA5			308			rs55645543-T	rs55645543	0	55645543	intron	0	0.98	5E-7	6.30102999566398	(Age at smoking initiation)	   4.39	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	15q25.1	15	78535289	AGPHD1	HYKK			123688			rs28675338-T	rs28675338	0	28675338	intron	0	0.11	1E-7	7	(Lifetime average CPD)	   5.21	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	10q23.33	10	94298879	PLCE1	PLCE1			51196			rs117607728-G	rs117607728	0	117607728	intron	0	0.98	4E-7	6.397940008672037	(Lifetime average CPD)	   3.00	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	1p32.3	1	53405413	FLJ40434	LRP8 - SLC25A3P1	7804	163742		       77.26	       32.96	rs114216682-G	rs114216682	0	114216682	Intergenic	1	0.97	7E-8	7.154901959985742	(Smoking cessation)	   4.49	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	3q13.13	3	111514392	CD96	PVRL3 - CD96	25945	10225		      320.22	       27.69	rs56238310-A	rs56238310	0	56238310	Intergenic	1	0.08	1E-7	7	(Current CPD)	   2.11	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	3q13.13	3	111482938	Intergenic	PVRL3 - CD96	25945	10225		      288.77	       59.14	rs76884941-G	rs76884941	0	76884941	Intergenic	1	0.08	1E-7	7	(Current CPD)	   2.11	[NR] 	Illumina [~6.3 million] (imputed)	N
07/14/2011	21685187	Siedlinski M	06/16/2011	Thorax	http://www.ncbi.nlm.nih.gov/pubmed/21685187	Genome-wide association study of smoking behaviours in patients with COPD.	Chronic obstructive pulmonary disease	3,441 European ancestry ever-smoker cases	NA	2p21	2	46795404	SOCS5	SOCS5 - LINC01118	9655	388948		       32.62	       21.26	rs76351433-A	rs76351433	0	76351433	Intergenic	1	0.96	2E-7	6.698970004336019	(Current CPD)	   1.45	[NR] 	Illumina [~6.3 million] (imputed)	N
06/29/2011	21653640	Eleftherohorinou H	06/13/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21653640	Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls, 908 Other ancestry cases, 1,260 Other ancestry controls	NA	6p21.32	6	32461866	HLA-DRA	TRNAI25			100189401			rs9268853-C	rs9268853	0	9268853		0	NR	5E-109	108.301029995664		   2.40	[2.20-2.60] 	Affymetrix & Illumina [NR]	N
06/29/2011	21653640	Eleftherohorinou H	06/13/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21653640	Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls, 908 Other ancestry cases, 1,260 Other ancestry controls	NA	6p21.32	6	32634492	HLA-DQA1	TRNAI25			100189401			rs9272219-?	rs9272219	0	9272219		0	NR	1E-45	44.99999999999999		   1.92	[1.75-2.08] 	Affymetrix & Illumina [NR]	N
06/29/2011	21653640	Eleftherohorinou H	06/13/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21653640	Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls, 908 Other ancestry cases, 1,260 Other ancestry controls	NA	6p21.33	6	31412154	MICA	MICA			100507436			rs1063635-?	rs1063635	0	1063635	missense	0	NR	1E-17	17		   1.35	[1.27-1.45] 	Affymetrix & Illumina [NR]	N
06/29/2011	21653640	Eleftherohorinou H	06/13/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21653640	Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls, 908 Other ancestry cases, 1,260 Other ancestry controls	NA	6p22.1	6	29821394	HLA-G	TRNAI25			100189401			rs1610677-?	rs1610677	0	1610677		0	NR	4E-15	14.39794000867204		   1.32	[1.79-1.41] 	Affymetrix & Illumina [NR]	N
06/29/2011	21653640	Eleftherohorinou H	06/13/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21653640	Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls, 908 Other ancestry cases, 1,260 Other ancestry controls	NA	22q12.3	22	37155567	IL2RB	IL2RB - C1QTNF6	3560	114904		        5.65	       24.60	rs743777-G	rs743777	0	743777	Intergenic	1	NR	2E-6	5.698970004336018		   1.19	[1.10-1.30] 	Affymetrix & Illumina [NR]	N
06/29/2011	21666691	Sun LD	06/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21666691	Genome-wide association study identifies two new susceptibility loci for atopic dermatitis in the Chinese Han population.	Atopic dermatitis	1,012 Han Chinese ancestry cases, 1,362 Han Chinese ancestry controls	3,624 Han Chinese ancestry cases, 12,197 Han Chinese ancestry controls, 1,806 European ancestry cases, 3,256 European ancestry controls	1q21.3	1	152328341	FLG	FLG-AS1			339400			rs3126085-A	rs3126085	0	3126085	intron	0	0.58	6E-12	11.22184874961635		   1.22	[NR] 	Illumina [491,905]	N
06/23/2011	21666692	Chasman DI	06/12/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21666692	Genome-wide association study reveals three susceptibility loci for common migraine in the general population.	Migraine	5,122 European ancestry cases, 18,108 European ancestry controls	3,831 European ancestry cases, 13,889 European ancestry controls	1p36.32	1	3167148	PRDM16	PRDM16			63976			rs2651899-C	rs2651899	0	2651899	intron	0	0.43	4E-9	8.397940008672036		   1.11	[1.07-1.15] 	Illumina and Affymetrix [2,608,509] (imputed)	N
06/23/2011	21666692	Chasman DI	06/12/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21666692	Genome-wide association study reveals three susceptibility loci for common migraine in the general population.	Migraine	5,122 European ancestry cases, 18,108 European ancestry controls	3,831 European ancestry cases, 13,889 European ancestry controls	2q37.1	2	233916448	TRPM8	TRPM8			79054			rs10166942-T	rs10166942	0	10166942	nearGene-5	0	0.81	6E-12	11.22184874961635		   1.18	[1.12-1.22] 	Illumina and Affymetrix [2,608,509] (imputed)	N
06/23/2011	21666692	Chasman DI	06/12/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21666692	Genome-wide association study reveals three susceptibility loci for common migraine in the general population.	Migraine	5,122 European ancestry cases, 18,108 European ancestry controls	3,831 European ancestry cases, 13,889 European ancestry controls	12q13.3	12	57133500	LRP1	LRP1			4035			rs11172113-T	rs11172113	0	11172113	intron	0	0.59	4E-9	8.397940008672036		   1.11	[1.08-1.15] 	Illumina and Affymetrix [2,608,509] (imputed)	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	6p12.3	6	51020055	Intergenic	TRNAI25			100189401			rs190759-?	rs190759	0	190759		0	0.18	5E-6	5.301029995663981	(Additive)	   1.11	[1.06-1.16] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q22	12	92496744	PLEKHG7	CLLU1 - C12orf74	574028	338809		       65.74	      206.10	rs10219495-?	rs10219495	0	10219495	Intergenic	1	0.10	5E-6	5.301029995663981	(Additive)	   1.14	[1.08-1.21] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q24.32	12	127308069	Intergenic	HSPE1P20 - FLJ37505	100288726	400087		      395.75	      573.55	rs1823172-?	rs1823172	0	1823172	Intergenic	1	0.08	5E-7	6.30102999566398	(Additive)	   1.17	[1.10-1.25] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	15q25.1	15	78633676	CHRNB4	CHRNB4			1143			rs950776-?	rs950776	0	950776	intron	0	0.68	4E-7	6.397940008672037	(Additive)	   1.09	[1.06-1.13] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	17q23.2	17	62701571	Intergenic	MARCH10			162333			rs2251393-?	rs2251393	0	2251393	UTR-3	0	0.15	4E-7	6.397940008672037	(Additive)	   1.13	[1.08-1.18] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	20q13.33	20	61668355	CDH4	CDH4			1002			rs944260-?	rs944260	0	944260	intron	0	0.24	2E-6	5.698970004336018	(Additive)	   1.10	[1.06-1.14] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2p25.1	2	11370822	E2F6	LOC650157			650157			rs6716724-?	rs6716724	0	6716724	intron	0	0.18	6E-7	6.221848749616355	(Recessive)	   1.39	[1.22-1.57] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2p16.2	2	54120613	ACYP2	ACYP2			98			rs1559040-?	rs1559040	0	1559040	intron	0	0.11	4E-8	7.397940008672037	(Recessive)	   1.54	[1.32-1.79] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q31.2	2	179701951	ZNF385B	ZNF385B			151126			rs16866933-?	rs16866933	0	16866933	intron	0	0.09	6E-14	13.22184874961636	(Recessive)	   1.69	[1.48-1.93] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	3p26.3	3	270666	CHL1	CHL1			10752			rs6764363-?	rs6764363	0	6764363	intron	0	0.36	6E-6	5.221848749616356	(Recessive)	   1.19	[1.10-1.28] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	22q13.1	22	39291479	Intergenic	PDGFB - RPL3	5155	6122		       46.53	       21.40	rs54211-?	rs54211	0	54211	Intergenic	1	0.13	8E-7	6.096910013008056	(Recessive)	   1.57	[1.32-1.88] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	4q26	4	116333133	Intergenic	MIR1973 - TRMT112P1	100302290	100288861		       33.37	       45.75	rs2389202-?	rs2389202	0	2389202	Intergenic	1	0.13	4E-7	6.397940008672037	(Recessive)	   1.43	[1.25-1.65] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	19q13.32	19	45804148	RSHL1	RSPH6A			81492			rs8111071-?	rs8111071	0	8111071	intron	0	0.09	4E-6	5.397940008672037	(Recessive)	   2.01	[1.50-2.70] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	5q22.2	5	113694467	Intergenic	YTHDC2 - KCNN2	64848	3781		       99.18	      667.38	rs4621553-?	rs4621553	0	4621553	Intergenic	1	0.22	4E-8	7.397940008672037	(Recessive)	   1.40	[1.24-1.58] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	13q22.1	13	74168185	Intergenic	KLF12 - RNY1P5	11278	100862667		       33.92	      120.92	rs12429889-?	rs12429889	0	12429889	Intergenic	1	0.16	5E-20	19.30102999566398	(Recessive)	   1.64	[1.48-1.81] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q21.2	12	75826838	Intergenic	RPL10P13 - PHLDA1	390345	22822		      137.74	      198.61	rs7307780-?	rs7307780	0	7307780	Intergenic	1	0.19	5E-15	14.30102999566398	(Recessive)	   1.45	[1.33-1.59] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	11q21	11	96133536	Intergenic	MAML2			84441			rs10765792-?	rs10765792	0	10765792	intron	0	0.11	8E-13	12.09691001300806	(Recessive)	   1.54	[1.37-1.72] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	5q33.2	5	153677988	GRIA1	GRIA1			2890			rs12189362-?	rs12189362	0	12189362	intron	0	0.12	3E-10	9.522878745280336	(Recessive)	   1.50	[1.32-1.69] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	6q25.1	6	151964552	ESR1	ESR1			2099			rs2982694-?	rs2982694	0	2982694	intron	0	0.14	7E-10	9.154901959985741	(Recessive)	   1.43	[1.28-1.60] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	10p12.31	10	18661626	Intergenic	ARL5B			221079			rs10829156-?	rs10829156	0	10829156	intron	0	0.20	4E-7	6.397940008672037	(Recessive)	   1.28	[1.16-1.41] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	18p11.31	18	6939948	Intergenic	SCML2P1 - LAMA1	100421167	284217		       11.73	        1.80	rs597503-?	rs597503	0	597503	Intergenic	1	0.13	2E-8	7.698970004336018	(Recessive)	   1.45	[1.27-1.65] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	18q11.2	18	26576461	KCTD1	KCTD1			284252			rs16942421-?	rs16942421	0	16942421	intron	0	0.08	8E-10	9.096910013008054	(Recessive)	   1.68	[1.43-1.98] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	14q31.3	14	87039904	Intergenic	FLRT2 - GALC	23768	2581		     1411.21	      797.92	rs11624056-?	rs11624056	0	11624056	Intergenic	1	0.11	3E-8	7.522878745280337	(Recessive)	   1.43	[1.26-1.62] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	7p12.3	7	46202985	Intergenic	TTC4P1 - HMGN1P19	222052	100874445		      202.21	      431.63	rs6964415-?	rs6964415	0	6964415	Intergenic	1	0.08	5E-7	6.30102999566398	(Recessive)	   1.42	[1.24-1.63] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	22q12.1	22	27694209	Intergenic	RPL15P22 - MN1	100130624	4330		      806.63	       54.07	rs5762311-?	rs5762311	0	5762311	Intergenic	1	0.09	7E-6	5.154901959985742	(Recessive)	   2.03	[1.49-2.75] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	15q26.2	15	94622351	MCTP2	RPL26P5 - LINC01197	654386	400456		      348.35	      656.94	rs1014922-?	rs1014922	0	1014922	Intergenic	1	0.10	3E-6	5.522878745280337	(Recessive)	   1.36	[1.20-1.55] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	17q24.3	17	70648048	Intergenic	CALM2P1 - CASC17	100128390	101928165		      405.67	      449.73	rs17718586-?	rs17718586	0	17718586	Intergenic	1	0.10	2E-8	7.698970004336018	(Recessive)	   1.53	[1.32-1.78] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	14q32.2	14	100159565	DEGS2	DEGS2			123099			rs7157599-?	rs7157599	0	7157599	missense	0	0.31	1E-7	7	(Dominant)	   1.13	[1.08-1.19] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	3q23	3	140456518	CLSTN2	CLSTN2			64084			rs11708189-?	rs11708189	0	11708189	intron	0	0.65	2E-6	5.698970004336018	(Dominant)	   1.12	[1.07-1.18] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	8q11.21	8	48899642	EFCAB1	EFCAB1 - SNAI2	79645	6591		      164.33	       18.04	rs12155623-?	rs12155623	0	12155623	Intergenic	1	0.57	3E-7	6.522878745280337	(Dominant)	   1.14	[1.09-1.20] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q21.33	12	91586597	DCN	DCN - C12orf79	1634	256021		      403.57	      398.38	rs10777317-?	rs10777317	0	10777317	Intergenic	1	0.60	5E-6	5.301029995663981	(Dominant)	   1.12	[1.07-1.18] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q23.1	12	97295990	Intergenic	TRNAQ46P - RMST	100189509	196475		      199.00	      169.03	rs10777845-?	rs10777845	0	10777845	Intergenic	1	0.66	5E-6	5.301029995663981	(Dominant)	   1.12	[1.07-1.17] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q24.1	2	157923692	Intergenic	ACVR1 - UPP2	90	151531		       47.83	       71.49	rs10183640-?	rs10183640	0	10183640	Intergenic	1	0.35	5E-7	6.30102999566398	(Dominant)	   1.12	[1.08-1.18] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	1q24.3	1	171292054	FMO1	HMGB1P11 - FMO4	100419996	2329		       20.47	       22.13	rs6660565-?	rs6660565	0	6660565	Intergenic	1	0.72	2E-6	5.698970004336018	(Dominant)	   1.12	[1.07-1.18] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	17p13.3	17	2868218	GARNL4	RAP1GAP2			23108			rs12603284-?	rs12603284	0	12603284	intron	0	0.08	3E-6	5.522878745280337	(Recessive)	   1.89	[1.45-2.47] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	16p13.2	16	9650238	Intergenic	RNA5SP404 - GRIN2A	100873656	2903		       50.01	      103.17	rs17550532-?	rs17550532	0	17550532	Intergenic	1	0.21	2E-6	5.698970004336018	(Recessive)	   1.33	[1.18-1.49] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	15q24.2	15	75426328	SIN3A	SIN3A			25942			rs8028182-?	rs8028182	0	8028182	intron	0	0.18	3E-6	5.522878745280337	(Recessive)	   1.36	[1.19-1.54] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	14q11.2	14	23563861	AP1G2	AP1G2;LOC102724814			8906;102724814			rs2281680-?	rs2281680	0	2281680	ncRNA;intron	0	0.21	6E-8	7.221848749616355	(Recessive)	   1.38	[1.23-1.54] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	13q12.12	13	24508492	PARP4	PARP4			143			rs9581094-?	rs9581094	0	9581094	intron	0	0.15	7E-7	6.154901959985743	(Recessive)	   1.70	[1.38-2.10] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q13.12	12	50819650	ATF1	ATF1			466			rs17291650-?	rs17291650	0	17291650	cds-synon	0	0.10	3E-7	6.522878745280337	(Recessive)	   1.43	[1.25-1.64] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	11p14.3	11	23023046	Intergenic	CCDC179 - MIR8054	100500938	102465860		      162.62	      396.06	rs10833905-?	rs10833905	0	10833905	Intergenic	1	0.22	7E-7	6.154901959985743	(Recessive)	   1.32	[1.18-1.47] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	10q23.33	10	94276223	PLCE1	PLCE1			51196			rs11187837-?	rs11187837	0	11187837	intron	0	0.12	4E-7	6.397940008672037	(Recessive)	   1.79	[1.43-2.24] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	8q22.3	8	104945312	ZFPM2	LRP12 - RPL23P9	29967	100129377		      356.29	       35.83	rs16872085-?	rs16872085	0	16872085	Intergenic	1	0.09	1E-6	5.999999999999999	(Recessive)	   1.83	[1.44-2.33] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	8q21.12	8	77768114	PXMP3	HIGD1AP18 - PKIA	100874456	5569		      754.06	      747.99	rs3864663-?	rs3864663	0	3864663	Intergenic	1	0.15	2E-6	5.698970004336018	(Recessive)	   1.40	[1.22-1.61] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	7q21.3	7	97991379	OCM2	OCM2			4951			rs13438327-?	rs13438327	0	13438327	nearGene-5	0	0.09	2E-6	5.698970004336018	(Recessive)	   2.05	[1.53-2.76] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	7p21.3	7	12892424	Intergenic	ARL4A - RBMX2P4	10124	100862677		      201.49	       29.92	rs732577-?	rs732577	0	732577	Intergenic	1	0.50	4E-6	5.397940008672037	(Recessive)	   1.15	[1.08-1.22] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q32.3	2	192090779	TMEFF2	TMEFF2			23671			rs13007495-?	rs13007495	0	13007495	intron	0	0.14	4E-6	5.397940008672037	(Recessive)	   1.47	[1.25-1.73] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q24.2	2	159213245	Intergenic	TANC1			85461			rs13022357-?	rs13022357	0	13022357	intron	0	0.09	1E-6	5.999999999999999	(Recessive)	   1.72	[1.38-2.14] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q24.1	2	154370165	Intergenic	GALNT13			114805			rs707040-?	rs707040	0	707040	intron	0	0.38	6E-6	5.221848749616356	(Recessive)	   1.17	[1.10-1.26] 	Affymetrix [319,222]	N
07/20/2011	21658281	Aouizerat BE	06/10/2011	BMC Cardiovasc Disord	http://www.ncbi.nlm.nih.gov/pubmed/21658281	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q24.1	2	154370165	Intergenic	GALNT13			114805			rs707040-?	rs707040	0	707040	intron	0	0.38	6E-6	5.221848749616356	(Recessive)	   1.17	[1.10-1.26] 	Affymetrix [319,222]	N
06/29/2011	21665993	Han S	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665993	Association of variants in FRAP1 and PDGFRA with corneal curvature in Asian populations from Singapore.	Corneal curvature	2,008 Chinese ancestry inidividuals, 2,281 Malay ancestry individuals	2,142 Asian Indian ancestry individuals, 929 Chinese ancestry children	1p36.22	1	11111169	FRAP1	MTOR			2475			rs17036350-T	rs17036350	0	17036350	intron	0	0.20	4E-13	12.39794000867204		    .18	[0.11-0.25] unit increase	Illumina [462,291]	N
06/29/2011	21665993	Han S	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665993	Association of variants in FRAP1 and PDGFRA with corneal curvature in Asian populations from Singapore.	Corneal curvature	2,008 Chinese ancestry inidividuals, 2,281 Malay ancestry individuals	2,142 Asian Indian ancestry individuals, 929 Chinese ancestry children	4q12	4	54226459	PDGFRA	RPL22P13 - PDGFRA	442108	5156		        4.99	        2.64	rs2114039-C	rs2114039	0	2114039	Intergenic	1	0.30	1E-9	8.999999999999998		    .13	[0.07-0.19] unit decrease	Illumina [462,291]	N
06/18/2011	21665988	Horne BD	06/10/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665988	Genome-wide significance and replication of the chromosome 12p11.22 locus near the PTHLH gene for peripartum cardiomyopathy.	Peripartum cardiomyopathy	36 European ancestry female cases, 5 Other ancestry female cases, 703 European ancestry female controls	59 European ancestry female cases, 303 European ancestry female controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [541,327]	N
07/07/2011	21665994	Kutalik Z	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665994	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	1p31.3	1	63661797	PGM1	PGM1 - ROR1	5236	4919		        1.55	      112.22	rs2749097-G	rs2749097	0	2749097	Intergenic	1	0.19	2E-9	8.698970004336019	(CDT percent)	    .12	[0.08-0.16] unit decrease	Affymetrix [390,631] (imputed)	N
07/07/2011	21665994	Kutalik Z	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665994	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	3	133775510	TF	TF			7018			rs1049296-T	rs1049296	0	1049296	missense	0	0.17	5E-43	42.30102999566397	(CDT percent)	    .29	[0.25-0.33] unit decrease	Affymetrix [390,631] (imputed)	N
07/07/2011	21665994	Kutalik Z	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665994	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	3	133756968	TF	TF			7018			rs1799899-A	rs1799899	0	1799899	missense	0	0.06	1E-9	8.999999999999998	(CDT concentration)	    .40	[0.27-0.53] unit decrease	Affymetrix [390,631] (imputed)	N
07/07/2011	21665994	Kutalik Z	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665994	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	3	133818223	SRPRB	SRPRB			58477			rs1534166-A	rs1534166	0	1534166	intron	0	0.30	2E-17	16.69897000433602	(CDT concentration)	    .29	[0.22-0.36] unit decrease	Affymetrix [390,631] (imputed)	N
07/07/2011	21665994	Kutalik Z	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665994	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	3	133765185	TF	TF			7018			rs3811647-A	rs3811647	0	3811647	intron	0	0.32	1E-35	35	(Total transferrin)	    .36	[0.30-0.42] unit increase	Affymetrix [390,631] (imputed)	N
07/07/2011	21665994	Kutalik Z	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665994	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.045	2E-32	31.69897000433602	(Total transferrin)	    .63	[0.53-0.73] unit decrease	Affymetrix [390,631] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6q22.1	6	116065971	FRK, COL10A1	FRK			2444			rs1999930-?	rs1999930	0	1999930	intron	0	0.70	1E-8	8		   1.15	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.1	6	43860845	VEGFA	TRNAI25			100189401			rs4711751-T	rs4711751	0	4711751		0	0.50	9E-9	8.045757490560675		   1.15	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	10q26.13	10	122454932	HTRA1	ARMS2			387715			rs10490924-T	rs10490924	0	10490924	missense	0	0.21	4E-322	321.397940008672		   2.94	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	1q31.3	1	196690107	CFH	CFH			3075			rs1061170-C	rs1061170	0	1061170	missense	0	0.37	1E-261	261		   2.41	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	6	31946403	CFB	CFB			629			rs641153-?	rs641153	0	641153	missense	0	0.90	6E-31	30.22184874961636		   1.85	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	19p13.3	19	6718376	C3	C3			718			rs2230199-C	rs2230199	0	2230199	missense	0	0.19	5E-29	28.30102999566398		   1.53	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	6p21.33	6	31936027	C2	C2;LOC102060414			717;102060414			rs9332739-?	rs9332739	0	9332739	missense;intron	0	0.96	2E-23	22.69897000433602		   2.17	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	22q12.3			TIMP3	 - 						rs9621532-?	rs9621532					0.95	2E-15			   1.59	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	15q21.3	15	58386313	LIPC	LOC102724766			102724766			rs10468017-?	rs10468017	0	10468017	intron	0	0.71	3E-12	11.52287874528034		   1.19	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	4q25	4	109737911	CFI	PLA2G12A - CFI	81579	3426		        7.83	        2.78	rs10033900-T	rs10033900	0	10033900	Intergenic	1	0.46	4E-10	9.397940008672037		   1.18	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/29/2011	21665990	Yu Y	06/10/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21665990	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.33	7E-9	8.154901959985743		   1.15	[NR] 	Affymetrix [6,036,699] (imputed)	N
06/25/2011	21654844	Briggs FB	06/09/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21654844	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	4q31.3	4	153232848	TRIM2	TRIM2			23321			rs12644284-?	rs12644284	0	12644284	intron	0	0.67	4E-6	5.397940008672037	(Extreme)	   2.04	[NR] 	Affymetrix [2,110,417] (imputed)	N
06/25/2011	21654844	Briggs FB	06/09/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21654844	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	7	76348912	YWHAG	YWHAG			7532			rs17149161-A	rs17149161	0	17149161	intron	0	0.2	6E-6	5.221848749616356	(Extreme)	   1.87	[NR] 	Affymetrix [2,110,417] (imputed)	N
06/25/2011	21654844	Briggs FB	06/09/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21654844	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	7	76321913	LOC100289506	HSPB1 - YWHAG	3315	7532		       17.62	        4.88	rs7789940-G	rs7789940	0	7789940	Intergenic	1	0.19	6E-6	5.221848749616356	(Extreme)	   1.87	[NR] 	Affymetrix [2,110,417] (imputed)	N
06/25/2011	21654844	Briggs FB	06/09/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21654844	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	7	76323980	LOC100289506	HSPB1 - YWHAG	3315	7532		       19.68	        2.81	rs758944-T	rs758944	0	758944	Intergenic	1	0.2	8E-6	5.096910013008055	(Continuous)	    .48	[NR] unit increase	Affymetrix [2,110,417] (imputed)	N
06/25/2011	21654844	Briggs FB	06/09/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21654844	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	7q11.23	7	76346269	YWHAG	YWHAG			7532			rs7779014-T	rs7779014	0	7779014	intron	0	0.2	8E-6	5.096910013008055	(Continuous)	    .48	[NR] unit increase	Affymetrix [2,110,417] (imputed)	N
06/25/2011	21654844	Briggs FB	06/09/2011	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/21654844	Genome-wide association study of severity in multiple sclerosis.	Multiple sclerosis	1,470 European ancestry cases	NA	6q21	6	105164345	POPDC3	POPDC3;BVES-AS1			64208;154442			rs11962089-G	rs11962089	0	11962089	intron;intron	0	0.16	8E-6	5.096910013008055	(Continuous)	    .69	[NR] unit decrease	Affymetrix [2,110,417] (imputed)	N
07/08/2011	21694764	Martin NW	06/09/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21694764	Educational attainment: a genome wide association study in 9538 Australians.	Educational attainment	9,538 European ancestry individuals	968 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,493,946] (imputed)	N
06/25/2011	21659334	Tanaka Y	06/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21659334	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	20	3204477	DDRGK1	DDRGK1			65992			rs11697186-T	rs11697186	0	11697186	intron	0	0.15	5E-17	16.30102999566398	(Decrease of PLT)	   4.50	[3.10-6.50] 	Affymetrix [595,052]	N
06/25/2011	21659334	Tanaka Y	06/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21659334	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	20	3207087	ITPA	ITPA			3704			rs6139030-C	rs6139030	0	6139030	nearGene-5	0	0.17	1E-15	15	(Decrease of PLT)	   3.90	[2.80-5.50] 	Affymetrix [595,052]	N
06/25/2011	21659334	Tanaka Y	06/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21659334	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	20	3204477	DDRGK1	DDRGK1			65992			rs11697186-A	rs11697186	0	11697186	intron	0	0.85	9E-25	24.04575749056067	(Change in Hb)	  33.33	[12.50-100] 	Affymetrix [595,052]	N
06/25/2011	21659334	Tanaka Y	06/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21659334	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	20	3207087	ITPA	ITPA			3704			rs6139030-T	rs6139030	0	6139030	nearGene-5	0	0.83	2E-25	24.69897000433602	(Change of Hb)	  25.00	[11.11-50.0] 	Affymetrix [595,052]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	1q41	1	214657274	CENPF	CENPF			1063			rs438034-T	rs438034	0	438034	missense	0	NR	5E-6	5.301029995663981		   1.88	[1.44-2.46] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	1q42.2	1	231763958	DISC1	DISC1;TSNAX-DISC1			27185;100303453			rs2793086-C	rs2793086	0	2793086	intron;intron	0	NR	9E-6	5.045757490560675		   3.01	[1.51-6.01] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	3q25.2	3	152954990	Intergenic	P2RY1 - HMGN2P13	5028	100289682		      116.93	      112.17	rs6785504-T	rs6785504	0	6785504	Intergenic	1	NR	7E-6	5.154901959985742		   2.11	[1.51-2.94] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	3q25.2	3	153004186	Intergenic	P2RY1 - HMGN2P13	5028	100289682		      166.13	       62.97	rs9883654-T	rs9883654	0	9883654	Intergenic	1	NR	2E-6	5.698970004336018		   2.20	[1.57-3.08] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	4p16.1	4	8501632	C4orf23, ACOX3	TRMT44			152992			rs1949733-A	rs1949733	0	1949733	intron	0	NR	8E-7	6.096910013008056		   2.36	[1.60-3.47] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	8q11.23	8	53497648	Intergenic	OPRK1 - RPL21P79	4986	100271188		      245.95	       35.64	rs10958369-?	rs10958369	0	10958369	Intergenic	1	NR	2E-6	5.698970004336018		   2.33	[1.64-3.33] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	9q31.1	9	102972913	Intergenic	ZYG11AP1 - CYLC2	100131879	1539		      360.94	       22.40	rs1342899-?	rs1342899	0	1342899	Intergenic	1	NR	8E-7	6.096910013008056		   3.13	[1.85-5.26] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	14q13.2	14	35928474	Intergenic	BRMS1L - ILF2P2	84312	644616		       56.51	      125.52	rs1168987-A	rs1168987	0	1168987	Intergenic	1	NR	5E-6	5.301029995663981		   2.27	[0.31-0.63] 	Illumina [326,385]	N
06/25/2011	21659360	Wade R	06/09/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21659360	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestary cases	380 European ancestry cases	14q23.2	14	63486804	PPP2R5E	PPP2R5E			5529			rs11158493-?	rs11158493	0	11158493	intron	0	NR	9E-7	6.045757490560675		   2.00	[1.56-2.56] 	Illumina [326,385]	N
06/18/2011	21647700	Below JE	06/07/2011	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/21647700	Genome-wide association and meta-analysis in populations from Starr County, Texas, and Mexico City identify type 2 diabetes susceptibility loci and enrichment for expression quantitative trait loci in top signals.	Type 2 diabetes	837 Mexican-American cases, 436 Mexican-American controls	967 Mexican ancestry cases, 343 Mexican ancestry controls	9p23	9	10430602	PTPRD	PTPRD			5789			rs649891-C	rs649891	0	649891	intron	0	0.35	6E-6	5.221848749616356		NR	NR	Affymetrix [1,829,586] (imputed)	N
06/18/2011	21647738	Wu Y	06/07/2011	Inflammation	http://www.ncbi.nlm.nih.gov/pubmed/21647738	Genome-wide association with C-reactive protein levels in CLHNS: evidence for the CRP and HNF1A loci and their interaction with exposure to a pathogenic environment.	C-reactive protein	1,709 Filipino ancestry females	NA	1q23.2	1	159705143	CRP	CRPP1			171422			rs876537-C	rs876537	0	876537		0	0.43	1E-9	8.999999999999998		    .29	[0.20-0.38] unit increase	Affymetrix [2,073,674] (imputed)	N
06/18/2011	21647738	Wu Y	06/07/2011	Inflammation	http://www.ncbi.nlm.nih.gov/pubmed/21647738	Genome-wide association with C-reactive protein levels in CLHNS: evidence for the CRP and HNF1A loci and their interaction with exposure to a pathogenic environment.	C-reactive protein	1,709 Filipino ancestry females	NA	12q24.31	12	120965129	HNF1A	RPL12P33 - HNF1A-AS1	643550	283460		       47.85	        4.71	rs7305618-T	rs7305618	0	7305618	Intergenic	1	0.52	1E-8	8		    .27	[0.18-0.36] unit increase	Affymetrix [2,073,674] (imputed)	N
06/18/2011	21647738	Wu Y	06/07/2011	Inflammation	http://www.ncbi.nlm.nih.gov/pubmed/21647738	Genome-wide association with C-reactive protein levels in CLHNS: evidence for the CRP and HNF1A loci and their interaction with exposure to a pathogenic environment.	C-reactive protein	1,709 Filipino ancestry females	NA	6q16.1	6	93142534	NR	COPS5P1 - EPHA7	135270	2045		       49.58	       97.49	rs1408282-A	rs1408282	0	1408282	Intergenic	1	0.10	1E-6	5.999999999999999		    .41	[0.24-0.58] unit increase	Affymetrix [2,073,674] (imputed)	N
06/20/2011	21646302	Bielinski SJ	06/06/2011	Mayo Clin Proc	http://www.ncbi.nlm.nih.gov/pubmed/21646302	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	2q37.1	2	233764663	UGT1A	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs4148325-?	rs4148325	0	4148325	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.33	5E-62	61.30102999566397		    .17	[0.15-0.19] mg/dL increase	Illumina [583,129]	N
06/20/2011	21646302	Bielinski SJ	06/06/2011	Mayo Clin Proc	http://www.ncbi.nlm.nih.gov/pubmed/21646302	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	2q37.1	2	233790144	LOC339766	MROH2A			339766			rs2361502-?	rs2361502	0	2361502	intron	0	0.29	7E-23	22.15490195998574		    .10	[0.08-0.12] mg/dL increase	Illumina [583,129]	N
06/20/2011	21646302	Bielinski SJ	06/06/2011	Mayo Clin Proc	http://www.ncbi.nlm.nih.gov/pubmed/21646302	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	12p12.1	12	21215788	SLCO1B1	SLCO1B1			10599			rs4363657-?	rs4363657	0	4363657	intron	0	0.17	5E-8	7.30102999566398		    .06	[0.04-0.08] mg/dL increase	Illumina [583,129]	N
06/20/2011	21646302	Bielinski SJ	06/06/2011	Mayo Clin Proc	http://www.ncbi.nlm.nih.gov/pubmed/21646302	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	2q37.1	2	233498009	USP40	USP40			55230			rs6704644-?	rs6704644	0	6704644	intron	0	0.11	8E-8	7.096910013008055		    .08	[0.05-0.11] mg/dL increase	Illumina [583,129]	N
06/20/2011	21646302	Bielinski SJ	06/06/2011	Mayo Clin Proc	http://www.ncbi.nlm.nih.gov/pubmed/21646302	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	8p23.3	8	495601	C8orf42	TDRP			157695			rs17665859-?	rs17665859	0	17665859	intron	0	0.07	5E-7	6.30102999566398		    .09	[0.06-0.12] mg/dL decrease	Illumina [583,129]	N
06/23/2011	21674006	Yamada K	06/06/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21674006	Genome-wide association study of schizophrenia in Japanese population.	Schizophrenia	120 Japanese ancestry trios	1,083 East Asian ancestry cases, 1,092 East Asian ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [97,963]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	12q24.13	12	112379979	RPL6	HECTD4			283450			rs11066280-A	rs11066280	0	11066280	intron	0	0.21	2E-15	14.69897000433602		   1.30	[1.22-1.38] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	0.13	2E-31	30.69897000433602		   1.56	[1.45-1.68] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	5q32	5	149524529	CSNK1A1	CSNK1A1			1452			rs10058728-T	rs10058728	0	10058728	intron	0	0.98	5E-9	8.301029995663981		   2.04	[1.61-2.56] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	3q26.31	3	175929377	TBL1XR1	UBE2V1P2 - EI24P1	730052	100129423		      210.70	      138.66	rs6772209-G	rs6772209	0	6772209	Intergenic	1	0.97	3E-7	6.522878745280337		   1.49	[1.28-1.75] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	3q21.1	3	123012063	SEMA5B	SEMA5B			54437			rs9868873-G	rs9868873	0	9868873	intron	0	0.82	1E-7	7		   1.19	[1.11-1.27] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	15q23	15	68766745	ANP32A	CORO2B - ANP32A	10391	8125		       38.94	       11.79	rs8030672-A	rs8030672	0	8030672	Intergenic	1	0.03	1E-11	11		   1.56	[1.37-1.78] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	10q23.33	10	94306584	PLCE1	PLCE1			51196			rs2274223-G	rs2274223	0	2274223	missense	0	0.21	4E-20	19.39794000867203		   1.34	[1.26-1.42] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	5q11.2	5	59111944	PDE4D	PDE4D			5144			rs10052657-C	rs10052657	0	10052657	intron	0	0.78	2E-19	18.69897000433602		   1.49	[1.37-1.61] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	12q24.12	12	111730205	ACAD10	ACAD10			80724			rs11066015-A	rs11066015	0	11066015	intron	0	0.19	7E-21	20.15490195998574		   1.38	[1.29-1.48] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	21q22.12	21	34985564	RUNX1	RUNX1			861			rs2014300-G	rs2014300	0	2014300	intron	0	0.83	8E-22	21.09691001300805		   1.43	[1.33-1.54] 	Affymetrix [666,141]	N
06/16/2011	21642993	Wu C	06/05/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21642993	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	6p21.1	6	40834522	UNC5CL	TRNAI25			100189401			rs10484761-G	rs10484761	0	10484761		0	0.09	7E-12	11.15490195998574		   1.33	[1.23-1.45] 	Affymetrix [666,141]	N
06/17/2011	21640322	Shi Y	06/02/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21640322	Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population.	Myopia (pathological)	419 Han Chinese ancestry high myopia cases, 669 Han Chinese ancestry controls	2,803 East Asian ancestry high myopia cases, 5,642 East Asian ancestry controls	13q12.12	13	23858328	MIPEP, C1QTNF9B-AS1, C1QTNF9B	MIPEP			4285			rs9318086-A	rs9318086	0	9318086	intron	0	0.44	2E-16	15.69897000433602		   1.32	[1.19-1.46] 	Illumina [493,947]	N
06/23/2011	21627779	Antunez C	05/31/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21627779	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 Other ancestry cases, 3,374 Other ancestry controls	11q12.2	11	60255614	MS4A	MIR6503 - MS4A4A	102465250	51338		       46.46	       24.93	rs1562990-?	rs1562990	0	1562990	Intergenic	1	0.58	4E-11	10.39794000867204		   1.14	[1.10-1.18] 	Affymetrix and Illumina [696,707](imputed)	N
06/23/2011	21627779	Antunez C	05/31/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21627779	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 Other ancestry cases, 3,374 Other ancestry controls	19q13.32	19	44892009	APOE	TOMM40			10452			rs157580-?	rs157580	0	157580	intron	0	NR	8E-89	88.09691001300804		   1.69	[NR] 	Affymetrix and Illumina [696,707](imputed)	N
06/23/2011	21627779	Antunez C	05/31/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21627779	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 Other ancestry cases, 3,374 Other ancestry controls	11q14.2	11	86076782	PICALM	PICALM - FNTAP1	8301	283226		        6.90	      118.35	rs536841-?	rs536841	0	536841	Intergenic	1	NR	3E-9	8.522878745280337		   1.16	[NR] 	Affymetrix and Illumina [696,707](imputed)	N
06/23/2011	21627779	Antunez C	05/31/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21627779	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 Other ancestry cases, 3,374 Other ancestry controls	8p21.1	8	27630273	CLU	MIR6843 - SCARA3	102465508	51435		       19.52	        3.31	rs569214-?	rs569214	0	569214	Intergenic	1	NR	4E-8	7.397940008672037		   1.14	[NR] 	Affymetrix and Illumina [696,707](imputed)	N
06/23/2011	21627779	Antunez C	05/31/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21627779	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 Other ancestry cases, 3,374 Other ancestry controls	2q14.3	2	127137039	BIN1	BIN1 - CYP27C1	274	339761		       29.71	       46.80	rs744373-?	rs744373	0	744373	Intergenic	1	NR	2E-9	8.698970004336019		   1.18	[NR] 	Affymetrix and Illumina [696,707](imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	1p13.3	1	109809855	CSF1, EPS8LS	EPS8L3 - CSF1	79574	1435		       45.83	      100.76	rs10494112-G	rs10494112	0	10494112	Intergenic	1	0.20	7E-35	34.15490195998574		   1.72	[1.57-1.87] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	6p22.3	6	22303975	PRL	PRL			5617			rs1341239-T	rs1341239	0	1341239	nearGene-5	0	0.38	4E-6	5.397940008672037		   1.20	[NR] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	7q33	7	135608380	NUP205	NUP205			23165			rs4294134-G	rs4294134	0	4294134	intron	0	0.84	8E-10	9.096910013008054		   1.45	[1.29-1.63] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	8q22.3	8	104347204	TM7SF4	DCSTAMP			81501			rs2458413-A	rs2458413	0	2458413	intron	0	0.58	7E-17	16.15490195998574		   1.40	[1.29-1.51] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	10p13	10	13113726	OPTN	OPTN			10133			rs1561570-T	rs1561570	0	1561570	intron	0	0.53	4E-38	37.39794000867204		   1.67	[1.54-1.80] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	14q32.12	14	92636964	RIN3	RIN3			79890			rs10498635-C	rs10498635	0	10498635	intron	0	0.82	3E-11	10.52287874528034		   1.44	[1.29-1.60] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	15q24.1	15	74044292	PML	PML			5371			rs5742915-C	rs5742915	0	5742915	missense	0	0.45	2E-14	13.69897000433602		   1.34	[1.25-1.45] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	18q21.33	18	62414860	TNFRSF11A	TNFRSF11A - RPL17P44	8792	100129584		       27.15	         .78	rs3018362-A	rs3018362	0	3018362	Intergenic	1	0.36	8E-21	20.09691001300805		   1.45	[1.34-1.56] 	Illumina [2,487,078] (imputed)	N
06/08/2011	21623375	Albagha OM	05/29/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21623375	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	Xq24	23	119433739	SLC25A43	SLC25A43			203427			rs5910578-C	rs5910578	0	5910578	intron	0	0.74	1E-7	7		   1.34	[NR] 	Illumina [2,487,078] (imputed)	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Coronary heart disease	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	1q21.1[rs12091564]; 1q21.1[rs10218795]			HFE2	 - 						2-SNP haplotype-1	rs12091564, rs10218795					(CC)	2E-7		(Coronary artery disease)	NR	NR	Affymetrix [407,576]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Coronary heart disease	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	3q26.1[rs11924705]; 3q26.1[rs6789378]			Intergenic	 - 						2-SNP haplotype-2	rs11924705, rs6789378					(CA)	4E-14		(Coronary artery disease)	NR	NR	Affymetrix [407,576]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Coronary heart disease	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	4p16.2[rs7697839]; 4p16.2[rs7673097]			STK32B	 - 						2-SNP haplotype-3	rs7697839, rs7673097					(GG)	2E-11		(Coronary artery disease)	NR	NR	Affymetrix [407,576]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Coronary heart disease	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	9p21.3[rs1333048]; 9p21.3[rs1333049]			CDKN2B, CDKN2A	 - 						2-SNP haplotype-4	rs1333048, rs1333049					(GG)	7E-14		(Coronary artery disease)	NR	NR	Affymetrix [407,576]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Coronary heart disease	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	12q23.3[rs1165668]; 12q23.3[rs1165669]			HSP90B1	 - 						2-SNP haplotype-5	rs1165668, rs1165669					(GC)	3E-9		(Coronary artery disease)	NR	NR	Affymetrix [407,576]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	2p12[rs10496288]; 2p12[rs10496289]			Intergenic	 - 						2-SNP haplotype-1	rs10496288, rs10496289					(GC)	2E-9			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	2q21.2[rs13420028]; 2q21.2[rs10188442]			GPR39	 - 						2-SNP haplotype-2	rs13420028, rs10188442					(AA)	1E-10			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	5p13.2[rs7735940]; 5p13.2[rs12522034]			RANBP3L	 - 						2-SNP haplotype-3	rs7735940, rs12522034					(AC)	5E-13			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	5q14.2[rs6452524]; 5q14.2[rs6887846]			XRCC4	 - 						2-SNP haplotype-4	rs6452524, rs6887846					(GA)	2E-7			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	6q14.1[rs3798440]; 6q14.1[rs9350602]			MYO6	 - 						2-SNP haplotype-5	rs3798440, rs9350602					(AC)	3E-10			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	8q24.12[rs2469997];			NOV	 - 						2-SNP haplotype-6	rs2469997, rs6469823					(GC)	3E-16			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	8q24.22[rs7827545]; 8q24.22[rs1372662]			ZFAT	 - 						2-SNP haplotype-7	rs7827545, rs1372662					(CG)	2E-44			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	12q12[rs7960483]; 12q12[rs10785581]			AN06	 - 						2-SNP haplotype-8	rs7960483, rs10785581					(TC)	1E-7			NR	NR	Affymetrix [405,022]	N
06/16/2011	21626137	Slavin TP	05/28/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21626137	Two-marker association tests yield new disease associations for coronary artery disease and hypertension.	Hypertension	~2,000 European ancestry cases, ~3,000 European ancestry controls	NA	20p12.1[rs200752]; 20p12.1[rs200759]			MACROD2	 - 						2-SNP haplotype-9	rs200752, rs200759					(TA)	7E-9			NR	NR	Affymetrix [405,022]	N
06/14/2011	21621269	Aragam N	05/26/2011	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/21621269	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 Other ancestry cases, 1,630 Other ancestry controls	NA	7p14.3	7	31115733	ADCYAP1R1	ADCYAP1R1 - NEUROD6	117	63974		        4.25	      221.73	rs1558477-?	rs1558477	0	1558477	Intergenic	1	NR	3E-7	6.522878745280337		NR	NR	Perlegen [433,556]	N
06/14/2011	21621269	Aragam N	05/26/2011	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/21621269	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 Other ancestry cases, 1,630 Other ancestry controls	NA	2p24.1	2	20061924	LAPTM4A	LAPTM4A - RPS16P2	9741	402069		        9.90	       93.65	rs7565124-?	rs7565124	0	7565124	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Perlegen [433,556]	N
06/14/2011	21621269	Aragam N	05/26/2011	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/21621269	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 Other ancestry cases, 1,630 Other ancestry controls	NA	10p11.22	10	33968684	PARD3	RPL23P11 - PARD3	100271297	56288		      103.96	      140.88	rs1780436-?	rs1780436	0	1780436	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Perlegen [433,556]	N
06/14/2011	21621269	Aragam N	05/26/2011	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/21621269	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 Other ancestry cases, 1,630 Other ancestry controls	NA	7q21.11	7	82820719	PCLO	PCLO			27445			rs2715148-?	rs2715148	0	2715148	intron	0	NR	1E-6	5.999999999999999		NR	NR	Perlegen [433,556]	N
06/14/2011	21621269	Aragam N	05/26/2011	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/21621269	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 Other ancestry cases, 1,630 Other ancestry controls	NA	15q21.1	15	48900594	SHC4	SHC4			399694			rs8023445-?	rs8023445	0	8023445	intron	0	NR	2E-6	5.698970004336018		NR	NR	Perlegen [433,556]	N
05/14/2013	21618603	Beaty TH	05/26/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21618603	Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate.	Orofacial clefts (interaction)	272 European ancestry trios, 259 Asian ancestry trios, 19 African ancestry or other ancestry trios	NA	6p24.1	6	11729849	C6orf105	ADTRP			84830			rs2294426-?	rs2294426	0	2294426	intron	0	NR	4E-8	7.397940008672037	(Maternal alcohol consumption, 1df)	NR	NR	Illumina [~498,000]	N
05/14/2013	21618603	Beaty TH	05/26/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21618603	Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate.	Orofacial clefts (interaction)	272 European ancestry trios, 259 Asian ancestry trios, 19 African ancestry or other ancestry trios	NA	9q31.1	9	104031445	SMC2	RNA5SP291 - SMC2	100873544	10592		      341.87	       62.82	rs1536895-C	rs1536895	0	1536895	Intergenic	1	0.065	3E-7	6.522878745280337	(Maternal alcohol consumption, 1df)	NR	NR	Illumina [~498,000]	N
06/14/2011	21612516	Malovini A	05/25/2011	Rejuvenation Res	http://www.ncbi.nlm.nih.gov/pubmed/21612516	Association study on long-living individuals from Southern Italy identifies rs10491334 in the CAMKIV gene that regulates survival proteins.	Longevity	410 European ancestry long-living individuals, 553 European ancestry young individuals	116 European ancestry long-living individuals, 160 European ancestry young individuals	5q22.1	5	111436706	CAMKIV	CAMK4			814			rs10491334-C	rs10491334	0	10491334	intron	0	0.82	2E-6	5.698970004336018		   1.82	[1.43-2.33] 	Illumina [298,715]	N
06/08/2011	21611967	Gupta M	05/24/2011	J Bone Miner Res	http://www.ncbi.nlm.nih.gov/pubmed/21611967	Identification of homogeneous genetic architecture of multiple genetically correlated traits by block clustering of genome-wide associations.	Fracture-related traits	2,038 indivduals	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [433,510]	N
06/04/2011	21606135	Wild PS	05/23/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21606135	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	9p21.3	9	22125504	Intergenic	UBA52P6 - DMRTA1	100130239	63951		      112.97	      321.34	rs1333049-C	rs1333049	0	1333049	Intergenic	1	0.49	7E-58	57.15490195998574		   1.27	[1.23-1.31] 	Affymetrix [608,247]	N
06/04/2011	21606135	Wild PS	05/23/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21606135	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	9p21.3	9	22031006	MTAP	CDKN2B-AS1			100048912			rs7865618-A	rs7865618	0	7865618	intron	0	0.59	2E-27	26.69897000433602		   1.18	[1.14-1.21] 	Affymetrix [608,247]	N
06/04/2011	21606135	Wild PS	05/23/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21606135	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	10q23.31	10	89243170	LIPA	LIPA			3988			rs1412444-T	rs1412444	0	1412444	intron	0	0.32	4E-8	7.397940008672037		   1.10	[1.07-1.14] 	Affymetrix [608,247]	N
06/04/2011	21606135	Wild PS	05/23/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21606135	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	6q25.3	6	159225301	FNDC1	FNDC1			84624			rs365302-C	rs365302	0	365302	intron	0	0.24	8E-7	6.096910013008056		   1.11	[1.06-1.15] 	Affymetrix [608,247]	N
06/04/2011	21606135	Wild PS	05/23/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21606135	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	6q14.1	6	81805598	Intergenic	FAM46A - IBTK	55603	25998		       52.89	      364.64	rs16893526-G	rs16893526	0	16893526	Intergenic	1	0.91	5E-6	5.301029995663981		   1.13	[1.07-1.21] 	Affymetrix [608,247]	N
06/03/2011	21602798	Haiman CA	05/22/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21602798	Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21.	Prostate cancer	3,425 African American cases, 3,290 African American controls	1,500 African American/Afro-Caribbean cases, 1,908 African American/Afro-Caribbean controls, 344 Sub-Saharan African ancestry cases, 1,361 Sub-Saharan African ancestry controls	17q21.33	17	49359387	ZNF652	ZNF652;LOC102724596			22834;102724596			rs7210100-?	rs7210100	0	7210100	intron;nearGene-5	0	0.05	3E-13	12.52287874528034		   1.51	[1.35-1.69] 	Illumina [1,047,1986]	N
06/07/2011	21602797	Wright FA	05/22/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21602797	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	11p13	11	34812657	APIP, EHF	NDUFB8P3 - APIP	100132286	51074		      102.39	       69.64	rs12793173-C	rs12793173	0	12793173	Intergenic	1	0.24	1E-9	8.999999999999998	p.Phe508del/p.Phe508del only	NR	NR	Illumina [~2,609,000] (imputed)	N
06/07/2011	21602797	Wright FA	05/22/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21602797	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	Xq23	23	116170939	AGTR2	AGTR2			186			rs1403543-A	rs1403543	0	1403543	intron	0	0.51	2E-6	5.698970004336018		NR	NR	Illumina [~2,609,000] (imputed)	N
06/07/2011	21602797	Wright FA	05/22/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21602797	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	6p21.32	6	32464300	HLA-DRA	TRNAI25			100189401			rs9268905-C	rs9268905	0	9268905		0	0.32	1E-7	7		NR	NR	Illumina [~2,609,000] (imputed)	N
06/07/2011	21602797	Wright FA	05/22/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21602797	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	14q24.2	14	70050466	SLC8A3	SLC8A3			6547			rs12883884-T	rs12883884	0	12883884	intron	0	0.61	8E-6	5.096910013008055		NR	NR	Illumina [~2,609,000] (imputed)	N
06/07/2011	21602797	Wright FA	05/22/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21602797	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	5p15.33	5	428121	AHRR	AHRR			57491			rs12188164-A	rs12188164	0	12188164	intron	0	0.38	4E-6	5.397940008672037		NR	NR	Illumina [~2,609,000] (imputed)	N
06/07/2011	21602797	Wright FA	05/22/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21602797	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	16q21	16	62343249	CDH8	RNU6-21P - RPS15AP34	100302738	390735		      155.60	     1007.51	rs11645366-C	rs11645366	0	11645366	Intergenic	1	0.77	7E-6	5.154901959985742		NR	NR	Illumina [~2,609,000] (imputed)	N
06/14/2011	21625490	Andiappan AK	05/20/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21625490	Genome-wide association study for atopy and allergic rhinitis in a Singapore Chinese population.	Atopy	515 Chinese ancestry cases, 486 Chinese ancestry controls	2,323 Chinese ancestry cases, 511 Chinese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [460,183]	N
07/30/2011	21703177	Thompson AJ	05/20/2011	J Hepatol	http://www.ncbi.nlm.nih.gov/pubmed/21703177	Genome-wide association study of interferon-related cytopenia in chronic hepatitis C patients.	IFN-related cytopenia	984 European ancestry with genotype 1 HCV cases, 201 African American genotype 1 HCV cases, 99 Hispanic genotype 1 HCV cases	NA	20p13	20	3400902	ITPA	C20orf194			25943			rs965469-?	rs965469	0	965469	intron	0	NR	1E-9	8.999999999999998	(IFN-related thrombocytopenia at wk 4)	NR	NR	Illumina [565,759]	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p13.2	1	112648185	ST7L, CAPZA1	CAPZA1			829			rs17030613-C	rs17030613	0	17030613	intron	0	0.49	8E-6	5.096910013008055	(Systolic)	    .49	[0.27-0.71] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	2q24.3	2	164050310	FIGN, GRB14	FIGN - PRPS1P1	55137	100861436		      314.20	      163.23	rs16849225-C	rs16849225	0	16849225	Intergenic	1	0.61	4E-11	10.39794000867204	(Systolic)	    .75	[0.53-0.97] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	4q25	4	110460482	ENPEP	ZNF969P - ENPEP	100130995	2028		       41.98	       15.59	rs6825911-C	rs6825911	0	6825911	Intergenic	1	0.51	7E-8	7.154901959985742	(Systolic)	    .60	[0.38-0.82] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	5p13.3	5	32804422	NPR3	NPR3 - RPS8P8	4883	728553		       12.70	      357.73	rs1173766-C	rs1173766	0	1173766	Intergenic	1	0.60	2E-8	7.698970004336018	(Systolic)	    .63	[0.41-0.85] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.13	12	112379979	RPL6, PTPN11, ALDH2	HECTD4			283450			rs11066280-T	rs11066280	0	11066280	intron	0	0.75	8E-31	30.09691001300805	(Systolic)	   1.56	[1.31-1.81] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.21	12	115114632	TBX3	TBX3 - UBA52P7	6926	100128617		      430.47	      477.97	rs35444-A	rs35444	0	35444	Intergenic	1	0.75	8E-7	6.096910013008056	(Systolic)	    .63	[0.38-0.88] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q21.33	12	89666809	ATP2B1	ATP2B1			490			rs17249754-G	rs17249754	0	17249754	intron	0	0.64	8E-20	19.09691001300806	(Systolic)	   1.17	[0.92-1.42] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p13.2	1	112648185	ST7L, CAPZA1	CAPZA1			829			rs17030613-C	rs17030613	0	17030613	intron	0	0.49	1E-8	8	(Diastolic)	    .38	[0.24-0.52] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	4q25	4	110460482	ENPEP	ZNF969P - ENPEP	100130995	2028		       41.98	       15.59	rs6825911-C	rs6825911	0	6825911	Intergenic	1	0.51	9E-9	8.045757490560675	(Diastolic)	    .39	[0.25-0.53] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	5p13.3	5	32804422	NPR3	NPR3 - RPS8P8	4883	728553		       12.70	      357.73	rs1173766-C	rs1173766	0	1173766	Intergenic	1	0.60	1E-7	7	(Diastolic)	    .36	[0.22-0.50] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.13	12	112379979	RPL6, PTPN11, ALDH2	HECTD4			283450			rs11066280-T	rs11066280	0	11066280	intron	0	0.75	1E-35	35	(Diastolic)	   1.01	[0.85-1.17] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.21	12	115114632	TBX3	TBX3 - UBA52P7	6926	100128617		      430.47	      477.97	rs35444-A	rs35444	0	35444	Intergenic	1	0.75	1E-10	10	(Diastolic)	    .50	[0.34-0.66] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q21.33	12	89666809	ATP2B1	ATP2B1			490			rs17249754-G	rs17249754	0	17249754	intron	0	0.64	2E-13	12.69897000433602	(Diastolic)	    .58	[0.42-0.74] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p36.22	1	10736809	CASZ1	CASZ1			54897			rs880315-C	rs880315	0	880315	intron	0	0.65	7E-7	6.154901959985743	(Systolic)	    .74	[0.45-1.03] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	10q24.32	10	103086421	CNNM2, NT5C2, CYP17A1	CNNM2 - NT5C2	54805	22978		        7.83	        1.60	rs11191548-T	rs11191548	0	11191548	Intergenic	1	0.74	4E-17	16.39794000867203	(Systolic)	   1.18	[0.91-1.45] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p36.22	1	10736809	CASZ1	CASZ1			54897			rs880315-C	rs880315	0	880315	intron	0	0.65	3E-10	9.522878745280336	(Diastolic)	    .56	[0.38-0.74] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
07/13/2011	21572416	Kato N	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572416	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	10q24.32	10	103086421	CNNM2, NT5C2, CYP17A1	CNNM2 - NT5C2	54805	22978		        7.83	        1.60	rs11191548-T	rs11191548	0	11191548	Intergenic	1	0.74	7E-12	11.15490195998574	(Diastolic)	    .58	[0.42-0.74] mm Hg increase	Affymetrix & Illumina [1.7 million] (imputed)	N
06/03/2011	21573128	Kou I	05/15/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21573128	Common variants in a novel gene, FONG on chromosome 2q33.1 confer risk of osteoporosis in Japanese.	Osteoporosis	190 Japanese ancestry cases, 1,557 Japanese ancestry controls	2,089 Japanese ancestry cases, 3,114 Japanese ancestry controls	2q33.1	2	199812203	LOC348751, FONG	FTCDNL1			348751			rs7605378-?	rs7605378	0	7605378	intron	0	0.56	2E-8	7.698970004336018		   1.25	[1.16-1.35] 	Perlegen [224,507]	N
06/03/2011	21573907	Parra EJ	05/15/2011	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/21573907	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	(NR) European ancestry individuals	3q27.2	3	185813873	IGF2BP2	IGF2BP2			10644			rs1374910-T	rs1374910	0	1374910	intron	0	NR	1E-7	7		   1.24	[1.15-1.34] 	Affymetrix [315,658]	N
06/03/2011	21573907	Parra EJ	05/15/2011	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/21573907	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	(NR) European ancestry individuals	9p21.3	9	22136490	CDKN2A, CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      123.95	      310.35	rs1333051-A	rs1333051	0	1333051	Intergenic	1	NR	6E-10	9.221848749616356		   1.22	[1.15-1.30] 	Affymetrix [315,658]	N
06/03/2011	21573907	Parra EJ	05/15/2011	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/21573907	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	(NR) European ancestry individuals	11p15.4	11	2818521	KCNQ1	KCNQ1			3784			rs2237892-C	rs2237892	0	2237892	intron	0	NR	4E-6	5.397940008672037		   1.20	[1.11-1.29] 	Affymetrix [315,658]	N
06/03/2011	21573907	Parra EJ	05/15/2011	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/21573907	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	(NR) European ancestry individuals	12q24.31	12	120965129	HNF1A	RPL12P33 - HNF1A-AS1	643550	283460		       47.85	        4.71	rs7305618-C	rs7305618	0	7305618	Intergenic	1	NR	2E-8	7.698970004336018		   1.14	[1.09-1.20] 	Affymetrix [315,658]	N
06/03/2011	21573907	Parra EJ	05/15/2011	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/21573907	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	(NR) European ancestry individuals	14q32.2	14	100676553	C14orf70	LINC00523 - DLK1	283601	8788		        3.81	       50.31	rs730570-G	rs730570	0	730570	Intergenic	1	NR	8E-6	5.096910013008055		   1.14	[1.08-1.21] 	Affymetrix [315,658]	N
06/01/2011	21572414	Suhre K	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572414	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry males	1,862 European ancestry individuals	5p13.2	5	35037010	AGXT2	AGXT2			64902			rs37369-T	rs37369	0	37369	missense	0	0.092	2E-182	181.698970004336	(3-Aminoisobutyrate concentration)	NR	NR	Affymetrix [645,249]	N
06/01/2011	21572414	Suhre K	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572414	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry males	1,862 European ancestry individuals	8p22	8	18414928	NAT2	NAT2 - PSD3	10	23362		       13.72	      112.38	rs4921914-C	rs4921914	0	4921914	Intergenic	1	0.23	1E-28	28	(Formate/succinate ratio)	NR	NR	Affymetrix [645,249]	N
06/01/2011	21572414	Suhre K	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572414	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry males	1,862 European ancestry individuals	12q24.31	12	121957871	WDR66, HPD	WDR66			144406			rs830124-A	rs830124	0	830124	intron	0	0.152	1E-46	45.99999999999999	(2-Hydroxyisobutyrate concentration)	NR	NR	Affymetrix [645,249]	N
06/01/2011	21572414	Suhre K	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572414	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry males	1,862 European ancestry individuals	19q13.11	19	32873722	SLC7A9	SLC7A9 - CEP89	11136	84902		        3.95	        5.28	rs8101881-C	rs8101881	0	8101881	Intergenic	1	0.35	6E-27	26.22184874961635	(Lysine/valine ratio)	NR	NR	Affymetrix [645,249]	N
06/01/2011	21572414	Suhre K	05/15/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21572414	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry males	1,862 European ancestry individuals	3p21.31	3	45772602	SLC6A20	SLC6A20			54716			rs17279437-A	rs17279437	0	17279437	missense	0	0.115	3E-19	18.52287874528033	(Alanine/N,N-dimethylglycine ratio)	NR	NR	Affymetrix [645,249]	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	1	19512621	CAPZB	CAPZB - MINOS1	832	440574		       26.98	       84.36	rs12138950-A	rs12138950	0	12138950	Intergenic	1	0.847	3E-18	17.52287874528034	(thyroid volume)	    .10	[0.08-0.12] unit decrease	Affymetrix [2,748,910] (imputed)	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	15q21.2	15	49443100	C15orf33, FGF7	FGF7;FAM227B			2252;196951			rs4338740-T	rs4338740	0	4338740	intron;intron	0	0.738	1E-12	12	(thyroid volume)	    .07	[0.05-0.09] unit decrease	Affymetrix [2,748,910] (imputed)	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	16q23.2	16	79710651	MAF	MAF - DYNLRB2	4094	83657		      109.93	      830.31	rs17767419-T	rs17767419	0	17767419	Intergenic	1	0.321	9E-15	14.04575749056067	(thyroid volume)	    .07	[0.05-0.09] unit increase	Affymetrix [2,748,910] (imputed)	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	1	19516860	CAPZB	CAPZB - MINOS1	832	440574		       31.22	       80.12	rs10917468-C	rs10917468	0	10917468	Intergenic	1	0.217	1E-14	14	(goiter)	   1.52	[1.37-1.69] 	Affymetrix [2,748,910] (imputed)	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	15q21.2	15	49443100	C15orf33, FGF7	FGF7;FAM227B			2252;196951			rs4338740-C	rs4338740	0	4338740	intron;intron	0	0.261	3E-13	12.52287874528034	(goiter)	   1.45	[1.32-1.59] 	Affymetrix [2,748,910] (imputed)	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	16q23.2	16	79715379	MAF	MAF - DYNLRB2	4094	83657		      114.65	      825.58	rs3813579-A	rs3813579	0	3813579	Intergenic	1	0.518	4E-10	9.397940008672037	(goiter)	   1.32	[1.21-1.44] 	Affymetrix [2,748,910] (imputed)	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	1	19439024	CAPZB	CAPZB			832			rs12045440-T	rs12045440	0	12045440	intron	0	0.664	3E-14	13.52287874528034	(thyroid volume)	    .07	[0.05-0.09] unit increase	Affymetrix [2,748,910] (imputed)	N
06/01/2011	21565293	Teumer A	05/13/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21565293	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	1	19439024	CAPZB	CAPZB			832			rs12045440-T	rs12045440	0	12045440	intron	0	0.664	2E-11	10.69897000433602	(goiter)	   1.38	[1.26-1.51] 	Affymetrix [2,748,910] (imputed)	N
05/27/2011	21573004	Prescott J	05/10/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21573004	Genome-wide association study of relative telomere length.	Telomere length	3,554 European ancestry individuals	2,460 European ancestry individuals	3q26.2	3	169763483	TERC	SDHDP3 - TERC	29771	7012		       52.91	        1.13	rs12696304-G	rs12696304	0	12696304	Intergenic	1	0.27	2E-14	13.69897000433602		    .03	[0.02-0.04] unit decrease	Illumina [2,608,509] (imputed)	N
05/27/2011	21551455	Kanetsky PA	05/06/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21551455	A second independent locus within DMRT1 is associated with testicular germ cell tumor susceptibility.	Testicular cancer	349 European ancestry cases, 919 European ancestry controls	439 European ancestry cases,960 European ancestry controls	9p24.3	9	845516	DMRT1	DMRT1			1761			rs7040024-A	rs7040024	0	7040024	intron	0	NR	1E-11	11		   1.70	[1.46-1.99] 	Affymetrix [609,482]	N
05/27/2011	21551455	Kanetsky PA	05/06/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21551455	A second independent locus within DMRT1 is associated with testicular germ cell tumor susceptibility.	Testicular cancer	349 European ancestry cases, 919 European ancestry controls	439 European ancestry cases,960 European ancestry controls	9p24.3	9	863635	DMRT1	DMRT1			1761			rs755383-T	rs755383	0	755383	intron	0	NR	9E-10	9.045757490560675		   1.50	[1.32-1.71] 	Affymetrix [609,482]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2p24.1	2	22964632	KLHL29	RNA5SP87 - KLHL29	100873320	114818		      625.63	      420.80	rs2681019-?	rs2681019	0	2681019	Intergenic	1	0.28	8E-8	7.096910013008055		   2.58	[1.82-3.66] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	20q12	20	39061821	LOC339568, DHX35	NPM1P19 - ATG3P1	10828	100135756		       83.31	      267.03	rs926392-?	rs926392	0	926392	Intergenic	1	0.29	5E-7	6.30102999566398		   2.37	[1.69-3.33] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	4q13.3	4	72917687	COX18, ADAMTS3	HNRNPA1P67 - RNU6ATAC5P	728019	100151688		      109.30	      109.06	rs6816344-?	rs6816344	0	6816344	Intergenic	1	0.49	1E-6	5.999999999999999		   1.70	[1.37-2.12] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	6q16.1	6	93138166	EPHA7	COPS5P1 - EPHA7	135270	2045		       45.21	      101.85	rs594442-?	rs594442	0	594442	Intergenic	1	0.05	1E-6	5.999999999999999		   1.99	[1.50-2.64] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	14q32.12	14	92170369	SLC24A4, CPSF2	CPSF2 - SLC24A4	53981	123041		        6.17	      152.21	rs1009170-?	rs1009170	0	1009170	Intergenic	1	0.57	2E-6	5.698970004336018		   2.00	[1.49-2.63] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	21q21.3	21	27372037	NCRNA00113, ADAMTS5	EIF4A1P1 - RPL10P1	54052	100288252		        4.06	       48.18	rs1452093-?	rs1452093	0	1452093	Intergenic	1	0.23	2E-6	5.698970004336018		   1.59	[1.31-1.94] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2p13.1	2	74018650	TET3, DGUOK	TET3			200424			rs6546886-?	rs6546886	0	6546886	intron	0	0.29	3E-6	5.522878745280337		   2.13	[1.55-2.93] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	1q41	1	217353682	GPATCH2, ESRRG	ESRRG - GPATCH2	2104	55105		      215.93	       76.81	rs1497828-?	rs1497828	0	1497828	Intergenic	1	0.63	4E-6	5.397940008672037		   1.41	[1.22-1.64] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	7p15.3	7	22474434	IL6, RAPGEF5	STEAP1B			256227			rs17364464-?	rs17364464	0	17364464	intron	0	0.08	4E-6	5.397940008672037		   1.76	[1.38-2.25] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	21q21.3	21	27362678	NCRNA00113, ADAMTS5	GPX1P2 - EIF4A1P1	2884	54052		      218.68	        4.33	rs9977499-?	rs9977499	0	9977499	Intergenic	1	0.24	4E-6	5.397940008672037		   1.57	[1.29-1.91] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	8q24.13	8	121610260	HAS2	RPL35AP19 - HAS2	100271322	3037		      229.72	        2.77	rs17232789-?	rs17232789	0	17232789	Intergenic	1	0.63	6E-6	5.221848749616356		   1.59	[1.30-1.92] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	9q21.13	9	76423254	GCNT1, RPSAP9	RPSAP9 - GCNT1	653162	2650		       23.22	       18.41	rs6560517-?	rs6560517	0	6560517	Intergenic	1	0.71	7E-6	5.154901959985742		   1.56	[1.28-1.89] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	14q32.12	14	92505818	RIN3, SLC24A4	SLC24A4 - RIN3	123041	79890		        4.34	        7.96	rs4904947-?	rs4904947	0	4904947	Intergenic	1	0.05	8E-6	5.096910013008055		   1.90	[1.43-2.52] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	16q12.2	16	54460512	IRX5, IRX3	IRX3 - CRNDE	79191	643911		      173.70	      458.35	rs9921518-?	rs9921518	0	9921518	Intergenic	1	0.28	9E-6	5.045757490560675		   2.11	[1.52-2.93] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	1q32.1	1	199387388	Intergenic	FLJ43585			400800			rs16844716-?	rs16844716	0	16844716	intron	0	0.09	9E-6	5.045757490560675		   1.65	[1.32-2.07] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	3p13	3	73570410	PDZRN3	PDZRN3			23024			rs11128347-?	rs11128347	0	11128347	intron	0	0.89	6E-7	6.221848749616355		   1.85	[1.45-2.33] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2p21	2	47171925	CALM2	CALM2			805			rs815815-?	rs815815	0	815815	intron	0	0.19	7E-7	6.154901959985743		   1.51	[1.28-1.77] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	11p14.3	11	22808211	GAS2	GAS2			2620			rs7111546-?	rs7111546	0	7111546	intron	0	0.44	2E-6	5.698970004336018		   1.72	[1.37-2.16] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	22q12.2	22	30196080	LOC729980	RPS3AP51 - LIF	100271600	3976		       58.68	       44.37	rs2412980-?	rs2412980	0	2412980	Intergenic	1	0.09	4E-6	5.397940008672037		   1.65	[1.33-2.04] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	18p11.23	18	8209271	PTPRM	PTPRM			5797			rs8098064-?	rs8098064	0	8098064	intron	0	0.26	4E-6	5.397940008672037		   1.42	[1.22-1.65] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	1p22.1	1	93997213	ABCA4	ABCA4			24			rs17110736-?	rs17110736	0	17110736	intron	0	0.35	5E-6	5.301029995663981		   2.08	[1.52-2.86] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	20p12.1	20	17376928	PCSK2	PCSK2			5126			rs4814615-?	rs4814615	0	4814615	intron	0	0.19	5E-6	5.301029995663981		   1.59	[1.30-1.95] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	11p14.3	11	22821609	SVIP	SVIP			258010			rs712022-?	rs712022	0	712022	intron	0	0.53	6E-6	5.221848749616356		   1.61	[1.32-1.96] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	8p12	8	32554841	NRG1	NRG1			3084			rs2439312-?	rs2439312	0	2439312	intron	0	0.24	7E-6	5.154901959985742		   2.36	[1.62-3.45] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	18p11.23	18	7755773	PTPRM	PTPRM			5797			rs7243299-?	rs7243299	0	7243299	intron	0	0.10	8E-6	5.096910013008055		   1.63	[1.31-2.03] 	Affymetrix [832,357]	N
05/27/2011	21546767	Murea M	05/05/2011	Am J Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21546767	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2q37.2	2	234991527	SH3BP4	SH3BP4			23677			rs11676855-?	rs11676855	0	11676855	intron	0	0.67	9E-6	5.045757490560675		   1.43	[1.22-1.67] 	Affymetrix [832,357]	N
06/01/2011	21546496	Guerrero JA	05/03/2011	Haematologica	http://www.ncbi.nlm.nih.gov/pubmed/21546496	Novel loci involved in platelet function and platelet count identified by a genome-wide study performed in children.	Platelet function and related traits	70 children	286 children	5q35.3	5	177415473	F12	F12 - GRK6	2161	2870		        5.90	       11.02	rs2731672-?	rs2731672	0	2731672	Intergenic	1	NR	1E-6	5.999999999999999	(FXII levels)	NR	NR	Illumina [320,610]	N
06/01/2011	21540310	Hofmann S	05/03/2011	Eur Respir J	http://www.ncbi.nlm.nih.gov/pubmed/21540310	A genome-wide association study reveals evidence of association with sarcoidosis at 6p12.1.	Sarcoidosis	381 European ancestry cases, 392 European ancestry controls	1,582 European ancestry cases, 1,783 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [97,088]	N
06/01/2011	21540461	Kim DH	05/03/2011	Blood	http://www.ncbi.nlm.nih.gov/pubmed/21540461	A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia.	Chronic myeloid leukemia	201 Korean ancestry cases, 497 Korean ancestry controls	237 Korean ancestry cases, 1,000 Korean ancestry controls, 232 European ancestry cases, 576 European ancestry controls	6q25.1	6	151586613	MTHFD1L, AKAP12, ZBTB2, RMND1, C6orf211, C6orf97, ESR1	CCDC170			80129			rs4869742-T	rs4869742	0	4869742	intron	0	0.77	2E-6	5.698970004336018		   1.67	[1.35-2.04] 	Affymetrix [456,522]	N
06/01/2011	21540461	Kim DH	05/03/2011	Blood	http://www.ncbi.nlm.nih.gov/pubmed/21540461	A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia.	Chronic myeloid leukemia	201 Korean ancestry cases, 497 Korean ancestry controls	237 Korean ancestry cases, 1,000 Korean ancestry controls, 232 European ancestry cases, 576 European ancestry controls	17q11.1	17	27214252	WSB1, FAM27L	TUFMP1 - RPL34P31	645668	729536		      130.13	       59.86	rs4795519-C	rs4795519	0	4795519	Intergenic	1	0.48	1E-12	12		   1.85	[1.56-2.17] 	Affymetrix [456,522]	N
06/01/2011	21532571	Burdon KP	05/01/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21532571	Genome-wide association study identifies susceptibility loci for open angle glaucoma at TMCO1 and CDKN2B-AS1.	Glaucoma	590 European ancestry cases, 3,956 European ancestry controls	892 European ancestry advanced cases, 4,582 European ancestry less severe cases	1q24.1	1	165717968	TMCO1	RPL21P27 - TMCO1	100270952	54499		       41.15	        6.32	rs4656461-G	rs4656461	0	4656461	Intergenic	1	0.12	6E-14	13.22184874961636		   1.51	[1.35-1.68] 	Illumina [298,778]	N
06/01/2011	21532571	Burdon KP	05/01/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21532571	Genome-wide association study identifies susceptibility loci for open angle glaucoma at TMCO1 and CDKN2B-AS1.	Glaucoma	590 European ancestry cases, 3,956 European ancestry controls	892 European ancestry advanced cases, 4,582 European ancestry less severe cases	9p21.3	9	22068653	CDKN2B-AS1	CDKN2B-AS1;LOC102724137			100048912;102724137			rs4977756-A	rs4977756	0	4977756	intron;intron	0	0.60	1E-14	14		   1.39	[1.28-1.51] 	Illumina [298,778]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	1q23.2	1	159204893	DARC	ACKR1			2532			rs2814778-?	rs2814778	0	2814778	UTR-5	0	NR	1E-8	8		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	2p25.1	2	8808940	KIDINS220	KIDINS220			57498			rs7587928-?	rs7587928	0	7587928	intron	0	NR	2E-7	6.698970004336019		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	3q22.1	3	132095056	CPNE4	MIR5704 - TRNAC14	100847040	100189179		      109.13	      134.04	rs6775745-?	rs6775745	0	6775745	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	11q22.3	11	103718366	PDGFD	MTND1P36 - MIR4693	100506721	100616457		      309.99	      131.54	rs1917445-?	rs1917445	0	1917445	Intergenic	1	NR	6E-7	6.221848749616355		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	21q22.2	21	40803034	DSCAM	DSCAM			1826			rs2837828-?	rs2837828	0	2837828	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	8p23.1	8	11780735	NEIL2	NEIL2			252969			rs6601606-?	rs6601606	0	6601606	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	8q21.13	8	80557885	RP11-48B3.1, RPSAP47	ZBTB10 - RPSAP47	65986	389672		       31.62	         .91	rs272594-?	rs272594	0	272594	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	1p32.1	1	59618844	FGGY	FGGY			55277			rs12727131-?	rs12727131	0	12727131	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	8p22	8	18924537	PSD3	PSD3			23362			rs4921617-?	rs4921617	0	4921617	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	6q24.2	6	142501080	AL161904.1, RP11-440G9.1	GPR126 - HIVEP2	57211	3097		       54.81	      250.39	rs9496398-?	rs9496398	0	9496398	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	3q13.13	3	110208529	AC078918.1, RP11-696F10.1	MIR4445 - RPSAP29	100616129	389141		      605.63	      473.69	rs13323983-?	rs13323983	0	13323983	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	2p13.3	2	70509087	TGFA	TGFA			7039			rs454305-?	rs454305	0	454305	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	2q33.1	2	198123211	PLCL1	PLCL1			5334			rs988583-?	rs988583	0	988583	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	10p12.31	10	20385724	AL353790.1, RP11-337N19.1	AMD1P1 - MIR4675	100133024	100616383		       34.62	      166.25	rs12772794-?	rs12772794	0	12772794	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	15q21.3	15	55164312	RSL24D1	HNRNPA1P74 - RSL24D1	100421430	51187		      842.65	       17.00	rs16976033-?	rs16976033	0	16976033	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	6p21.1	6	41957566	CCND3	CCND3			896			rs11968166-?	rs11968166	0	11968166	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	14q32.2	14	96879469	VRK1	VRK1			7443			rs4905558-?	rs4905558	0	4905558	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	4q26	4	117730668	AC109592.1, AC092661.1	NT5C3AP1 - NDST3	90859	9348		      154.48	      302.85	rs4422476-?	rs4422476	0	4422476	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	6p22.3	6	24749185	AL133264.1, RP3-369A17.4	C6orf62 - GMNN	81688	51053		       28.35	       25.75	rs17419851-?	rs17419851	0	17419851	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	14q32.13	14	95739733	AL139020.1	TCL1A - TUNAR	8115	100507043		       25.54	      137.04	rs2369304-?	rs2369304	0	2369304	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	16p12.2	16	23754453	AC130454.2, AC130454.1	CHP2			63928			rs4968031-?	rs4968031	0	4968031	nearGene-5	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	12q24.31	12	122973072	ABCB9	OGFOD2			79676			rs7296418-?	rs7296418	0	7296418	nearGene-5	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	5q35.3	5	181168138	AC008620.2	TRNAL43P - TRNAV3	100189493	7241		        3.49	        1.47	rs1279750-?	rs1279750	0	1279750	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	12q24.31	12	123091195	PITPNM2	PITPNM2			57605			rs1727307-?	rs1727307	0	1727307	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	1q43	1	239438669	CHRM3	CHRM3			1131			rs6677208-?	rs6677208	0	6677208	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	1p34.2	1	40773839	NFYC	MIR30C1 - KCNQ4	407031	9132		       16.47	       10.17	rs4660456-?	rs4660456	0	4660456	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	7p14.2	7	36152090	EEPD1	EEPD1			80820			rs4302748-?	rs4302748	0	4302748	nearGene-5	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	18q21.31	18	58442627	AC105105.1	NEDD4L - MIR122	23327	406906		       41.09	        8.45	rs8099014-?	rs8099014	0	8099014	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	12q24.13	12	112735689	AC007425.1	MIR1302-1 - RPH3A	100302227	22895		       40.51	       56.06	rs3803064-?	rs3803064	0	3803064	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [874,956]	N
06/01/2011	21507922	Ramsuran V	05/01/2011	Clin Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21507922	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet counts	115 African ancestry HIV-negative individuals	NA	1p21.3	1	97354111	DPYD	DPYD			1806			rs11165846-?	rs11165846	0	11165846	intron	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [874,956]	N
06/01/2011	21502085	Troyer JL	05/01/2011	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21502085	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	2q33.3	2	205453869	PARD3B	PARD3B			117583			rs11884476-?	rs11884476	0	11884476	intron	0	0.94	3E-9	8.522878745280337		   3.32	[NR] 	Affymetrix [700,022]	N
06/01/2011	21502085	Troyer JL	05/01/2011	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21502085	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	7q33	7	137519073	DGKI	DGKI			9162			rs6467710-?	rs6467710	0	6467710	intron	0	0.02	6E-7	6.221848749616355		   4.30	[NR] 	Affymetrix [700,022]	N
06/01/2011	21502085	Troyer JL	05/01/2011	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21502085	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	1q21.1	1	147089017	NBPF14	TRNAN5			100189005			rs11239930-?	rs11239930	0	11239930		0	0.58	2E-6	5.698970004336018		   1.47	[NR] 	Affymetrix [700,022]	N
06/01/2011	21502085	Troyer JL	05/01/2011	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21502085	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	17p13.3	17	189133	RPH3AL	LOC100506371			100506371			rs7217319-?	rs7217319	0	7217319	nearGene-5	0	0.63	4E-6	5.397940008672037		   1.48	[NR] 	Affymetrix [700,022]	N
06/01/2011	21502085	Troyer JL	05/01/2011	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21502085	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	3p21.31	3	46386699	CCRL2	LOC102724297			102724297			rs6441975-?	rs6441975	0	6441975	intron	0	0.31	5E-6	5.301029995663981		   1.48	[NR] 	Affymetrix [700,022]	N
06/01/2011	21502085	Troyer JL	05/01/2011	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21502085	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	5q31.1	5	135132010	H2AFY	C5orf66			100996485			rs477687-?	rs477687	0	477687	intron	0	0.18	6E-6	5.221848749616356		   1.55	[NR] 	Affymetrix [700,022]	N
06/01/2011	21502085	Troyer JL	05/01/2011	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/21502085	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	3p21.31	3	46410189	LTF	CCRL2 - LTF	9034	4057		         .67	       25.82	rs1015164-?	rs1015164	0	1015164	Intergenic	1	0.31	9E-6	5.045757490560675		   1.46	[NR] 	Affymetrix [700,022]	N
06/01/2011	21531791	Sanson M	04/29/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21531791	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	7p11.2	7	55091656	EGFR	EGFR			1956			rs11979158-A	rs11979158	0	11979158	intron	0	0.83	7E-8	7.154901959985742		   1.23	[1.15-1.35] 	Illumina [424,460]	N
06/01/2011	21531791	Sanson M	04/29/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21531791	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	8q24.21	8	129673211	CCDC26	MIR3686 - GSDMC	100500839	56169		      189.07	       74.99	rs4295627-?	rs4295627	0	4295627	Intergenic	1	NR	5E-21	20.30102999566398		   1.40	[NR] 	Illumina [424,460]	N
06/01/2011	21531791	Sanson M	04/29/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21531791	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	9p21.3	9	22033367	CDKN2A, CDKN2B	CDKN2B-AS1			100048912			rs2157719-?	rs2157719	0	2157719	intron	0	NR	5E-16	15.30102999566398		   1.26	[NR] 	Illumina [424,460]	N
06/01/2011	21531791	Sanson M	04/29/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21531791	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	11q23.3	11	118606652	PHLDB1	PHLDB1			23187			rs498872-?	rs498872	0	498872	UTR-5	0	NR	5E-11	10.30102999566398		   1.22	[NR] 	Illumina [424,460]	N
06/01/2011	21531791	Sanson M	04/29/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21531791	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	20q13.33	20	63678486	RTEL1	RTEL1;RTEL1-TNFRSF6B			51750;100533107			rs6010620-?	rs6010620	0	6010620	intron;intron	0	NR	2E-9	8.698970004336019		   1.24	[NR] 	Illumina [424,460]	N
06/01/2011	21531791	Sanson M	04/29/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21531791	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-?	rs2736100	0	2736100	intron	0	NR	1E-14	14		   1.25	[NR] 	Illumina [424,460]	N
06/01/2011	21531791	Sanson M	04/29/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21531791	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	7p11.2	7	54911231	EGFR	SEC61G - EGFR	23480	1956		      151.99	      107.80	rs2252586-T	rs2252586	0	2252586	Intergenic	1	0.296	8E-8	7.096910013008055		   1.18	[1.11-1.25] 	Illumina [424,460]	N
06/01/2011	21521612	Kohli MA	04/28/2011	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/21521612	The neuronal transporter gene SLC6A15 confers risk to major depression.	Major depressive disorder	353 European ancestry cases, 366 European ancestry controls	991 African Americans, 4,308 European ancestry cases, 9,661 European ancestry controls	12q21.31	12	84170289	SLC6A15	RPL6P25 - SLC6A15	401725	55117		     1018.06	      689.20	rs1545843-A	rs1545843	0	1545843	Intergenic	1	NR	1E-9	8.999999999999998		   1.40	[1.254-1.557] 	Illumina [365,676]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	16q12.2	16	53779455	FTO	FTO			79068			rs17817449-?	rs17817449	0	17817449	intron	0	NR	2E-12	11.69897000433602	(obesity)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	2q31.3	2	180497652	UBE2E3	CWC22 - SCHLAP1	57703	101669767		      490.36	      194.45	rs16867321-?	rs16867321	0	16867321	Intergenic	1	NR	2E-6	5.698970004336018	(obesity)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	4q35.2	4	186757712	FAT1, MTNR1A	FAT1 - MRPS36P2	2195	347706		       30.99	      143.03	rs925642-?	rs925642	0	925642	Intergenic	1	NR	7E-6	5.154901959985742	(obesity)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	8p22	8	18120141	ASAH1	MRPS18CP3 - NAT1	359764	9		       32.45	       50.32	rs17126232-?	rs17126232	0	17126232	Intergenic	1	NR	4E-7	6.397940008672037	(BMI)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	7q22.3	7	104863366	LHFPL3	LHFPL3			375612			rs10953454-?	rs10953454	0	10953454	intron	0	NR	7E-7	6.154901959985743	(HIP)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	8p22	8	18120141	ASAH1	MRPS18CP3 - NAT1	359764	9		       32.45	       50.32	rs17126232-?	rs17126232	0	17126232	Intergenic	1	NR	2E-7	6.698970004336019	(HIP)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	16q23.1	16	78918542	WWOX	WWOX			51741			rs9923451-?	rs9923451	0	9923451	intron	0	NR	8E-7	6.096910013008056	(HIP)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	22q12.1	22	27982484	PITPNB	TTC28;TTC28-AS1			23331;284900			rs5762430-?	rs5762430	0	5762430	cds-synon;intron	0	NR	7E-7	6.154901959985743	(HIP)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	21q21.1	21	21317024	NCAM2	NCAM2			4685			rs11088859-?	rs11088859	0	11088859	intron	0	NR	4E-8	7.397940008672037	(waist)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	8p22	8	18120141	ASAH1	MRPS18CP3 - NAT1	359764	9		       32.45	       50.32	rs17126232-?	rs17126232	0	17126232	Intergenic	1	NR	8E-8	7.096910013008055	(weight)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	13q21.32	13	66393490	PCDH9	PCDH9			5101			rs17081231-?	rs17081231	0	17081231	intron	0	NR	7E-7	6.154901959985743	(weight)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	2q14.2	2	120437605	INHBB	INHBB - LINC01101	3625	84931		       85.80	       26.73	rs7581710-?	rs7581710	0	7581710	Intergenic	1	NR	2E-7	6.698970004336019	(WHR)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	6q23.2	6	131488780	ARG1	RPL21P67 - ARG1	100271180	383		       19.21	       84.42	rs2807278-?	rs2807278	0	2807278	Intergenic	1	NR	3E-7	6.522878745280337	(WHR)	NR	NR	Illumina [~550,000]	N
05/28/2011	21552555	Wang K	04/28/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21552555	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	14q24.3	14	78319734	NRXN3	NRXN3			9369			rs11624704-?	rs11624704	0	11624704	intron	0	NR	3E-9	8.522878745280337	(WHR)	NR	NR	Illumina [~550,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (12-month weekly alcohol consumption)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	7q11.23	7	75582098	HIP1	HIP1			3092			rs237238-A	rs237238	0	237238	cds-synon	0	0.07	7E-6	5.154901959985742		    .16	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (12-month weekly alcohol consumption)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	14q21.1	14	42186072	Intergenic	OR10V7P - YWHAQP1	403225	319121		       79.90	      621.05	rs2154294-G	rs2154294	0	2154294	Intergenic	1	0.44	3E-6	5.522878745280337		    .08	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	2q23.3	2	150269889	Intergenic	MMADHC - TRNAE38P	27249	100189494		      682.07	       92.87	rs6716455-G	rs6716455	0	6716455	Intergenic	1	0.13	9E-6	5.045757490560675		    .11	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	6p21.31	6	35007638	ANKS1	ANKS1A			23294			rs2140418-C	rs2140418	0	2140418	intron	0	0.22	4E-6	5.397940008672037		    .10	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	7q31.32	7	121635175	Intergenic	RPL18P4 - PNPT1P2	392979	100533721		      193.91	      208.27	rs10253361-T	rs10253361	0	10253361	Intergenic	1	0.38	6E-6	5.221848749616356		    .08	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	13q32.1	13	97364162	MBNL2	MBNL2			10150			rs9556711-G	rs9556711	0	9556711	intron	0	0.08	8E-7	6.096910013008056		    .17	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	15q26.2	15	95509513	Intergenic	LINC00924 - NR2F2-AS1	145820	644192		        1.67	      756.87	rs933769-T	rs933769	0	933769	Intergenic	1	0.19	7E-6	5.154901959985742		    .10	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	21q22.3	21	46025877	Intergenic	COL6A1 - PSMA6P3	1291	100874510		       20.83	       46.21	rs4293630-A	rs4293630	0	4293630	Intergenic	1	0.14	7E-6	5.154901959985742		    .11	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	2q23.3	2	150269889	Intergenic	MMADHC - TRNAE38P	27249	100189494		      682.07	       92.87	rs6716455-G	rs6716455	0	6716455	Intergenic	1	0.13	7E-7	6.154901959985743		    .12	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	3q27.1	3	184498342	Intergenic	CHRD - EPHB3	8646	2049		      108.51	       63.46	rs3930234-C	rs3930234	0	3930234	Intergenic	1	0.15	8E-6	5.096910013008055		    .10	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	5p13.1	5	40134675	Intergenic	LINC00603 - PTGER4	102467077	5734		       81.35	      545.26	rs2548145-G	rs2548145	0	2548145	Intergenic	1	0.47	2E-6	5.698970004336018		    .08	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	6p21.31	6	35007638	ANKS1	ANKS1A			23294			rs2140418-C	rs2140418	0	2140418	intron	0	0.22	4E-6	5.397940008672037		    .10	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	13q32.1	13	97364162	MBNL2	MBNL2			10150			rs9556711-G	rs9556711	0	9556711	intron	0	0.08	2E-6	5.698970004336018		    .16	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	18q21.2	18	52759028	DCC	DCC			1630			rs768048-C	rs768048	0	768048	intron	0	0.12	8E-6	5.096910013008055		    .11	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	1p13.2	1	115191470	Intergenic	TSPAN2 - NGF	10100	4803		      101.97	       94.45	rs195204-T	rs195204	0	195204	Intergenic	1	0.24	9E-6	5.045757490560675		    .10	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	3q22.1	3	132974744	Intergenic	NPHP3-AS1 - TMEM108	348808	66000		      100.54	       63.54	rs2369955-A	rs2369955	0	2369955	Intergenic	1	0.16	2E-6	5.698970004336018		    .14	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	4q13.3	4	70463773	Intergenic	MUC7			4589			rs1109501-G	rs1109501	0	1109501	intron	0	0.24	5E-6	5.301029995663981		    .10	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	9q22.2	9	89634669	Intergenic	GADD45G - UNQ6494	10912	100129066		       28.11	        5.11	rs10908907-G	rs10908907	0	10908907	Intergenic	1	0.25	6E-6	5.221848749616356		    .10	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	13q12.2	13	27346474	Intergenic	RASL11A - GTF3A	387496	2971		       72.71	       78.07	rs9512637-C	rs9512637	0	9512637	Intergenic	1	0.32	1E-7	7		    .11	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	14q22.1	14	53606140	Intergenic	DDHD1 - RPS3AP46	80821	100271596		      452.81	        6.66	rs1380131-C	rs1380131	0	1380131	Intergenic	1	0.07	9E-6	5.045757490560675		    .15	[NR] unit increase	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	15q26.1	15	92501109	C15orf32	C15orf32			145858			rs8040009-T	rs8040009	0	8040009	UTR-3	0	0.21	3E-7	6.522878745280337		    .12	[NR] unit decrease	Illumina [~300,000]	N
05/28/2011	21529783	Heath AC	04/27/2011	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	21q21.1	21	22259356	Intergenic	LINC00308 - MAPK6PS2	54143	254664		      142.83	      175.68	rs2827312-G	rs2827312	0	2827312	Intergenic	1	0.32	8E-6	5.096910013008055		    .09	[NR] unit increase	Illumina [~300,000]	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	2q24.3	2	165726734	GALNT3	CSRNP3 - GALNT3	80034	2591		       37.33	       21.07	rs6710518-T	rs6710518	0	6710518	Intergenic	1	NR	5E-10	9.301029995663981	(femoral neck)	    .06	[NR] unit decrease	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	4q22.1	4	87811540	IBSP	IBSP			3381			rs1054627-G	rs1054627	0	1054627	missense	0	NR	8E-7	6.096910013008056	(femoral neck)	    .05	[NR] unit decrease	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	6p22.3	6	21384382	SOX4	RPL36AP25 - LINC00581	100271331	100874531		      661.81	      101.68	rs9466056-G	rs9466056	0	9466056	Intergenic	1	NR	4E-6	5.397940008672037	(femoral neck)	    .05	[NR] unit increase	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	6q22.33	6	126845927	RSPO3	RPS4XP9 - RSPO3	442257	84870		      162.02	      272.77	rs13204965-C	rs13204965	0	13204965	Intergenic	1	NR	3E-8	7.522878745280337	(femoral neck)	    .07	[NR] unit decrease	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	1p36.12	1	22371954	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-G	rs7524102	0	7524102	Intergenic	1	NR	9E-7	6.045757490560675	(total hip)	    .44	[NR] unit decrease	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	5q14.3	5	89080244	MEF2C	MEF2C-AS1 - MIR3660	101929423	100500825		       47.87	      936.38	rs1366594-C	rs1366594	0	1366594	Intergenic	1	NR	8E-10	9.096910013008054	(femoral neck)	    .14	[NR] unit increase	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	13q14.11	13	42378009	RANKL	FABP3P2 - TNFSF11	56677	8600		        8.25	      184.73	rs9594738-T	rs9594738	0	9594738	Intergenic	1	NR	4E-6	5.397940008672037	(lumbar spine)	    .15	[NR] unit increase	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	5q14.3	5	89080244	MEF2C	MEF2C-AS1 - MIR3660	101929423	100500825		       47.87	      936.38	rs1366594-C	rs1366594	0	1366594	Intergenic	1	NR	1E-7	7	(total hip)	    .35	[NR] unit increase	Illumina [2,543,887] (imputed)	N
05/27/2011	21533022	Duncan EL	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533022	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry females with low hip bone mineral density, 1,055 European ancestry females with high hip bone mineral density	20,898 European ancestry females	1p36.12	1	22371954	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-G	rs7524102	0	7524102	Intergenic	1	NR	1E-6	5.999999999999999	(femoral neck)	    .14	[NR] unit decrease	Illumina [2,543,887] (imputed)	N
05/27/2011	21533024	Pare G	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533024	Genome-wide association analysis of soluble ICAM-1 concentration reveals novel associations at the NFKBIK, PNPLA3, RELA, and SH2B3 loci.	Soluble ICAM-1	22,435 European ancestry females	9,813 Other ancestry individuals	9q34.2	9	133273983	ABO	ABO			28			rs507666-A	rs507666	0	507666	intron	0	0.20	3E-91	90.52287874528034		  17.30	[NR] ng/mL decrease	Illumina [334,295]	N
05/27/2011	21533024	Pare G	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533024	Genome-wide association analysis of soluble ICAM-1 concentration reveals novel associations at the NFKBIK, PNPLA3, RELA, and SH2B3 loci.	Soluble ICAM-1	22,435 European ancestry females	9,813 Other ancestry individuals	19p13.2	19	10284116	ICAM1	ICAM1			3383			rs1799969-A	rs1799969	0	1799969	missense	0	0.11	1E-120	120		  24.90	[NR] ng/mL decrease	Illumina [334,295]	N
05/27/2011	21533024	Pare G	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533024	Genome-wide association analysis of soluble ICAM-1 concentration reveals novel associations at the NFKBIK, PNPLA3, RELA, and SH2B3 loci.	Soluble ICAM-1	22,435 European ancestry females	9,813 Other ancestry individuals	19p13.2	19	10285007	ICAM1	ICAM1;ICAM4			3383;3386			rs5498-G	rs5498	0	5498	missense;nearGene-5	0	0.43	6E-89	88.22184874961636		  13.80	[NR] ng/mL increase	Illumina [334,295]	N
05/26/2011	21493818	Shaw SY	04/21/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21493818	Genetic and clinical correlates of early-outgrowth colony-forming units.	Monocyte early outgrowth colony forming units	1,654 European ancestry individuals	NA	1q41	1	220803991	MOSC1	MARC1			64757			rs6693017-G	rs6693017	0	6693017	intron	0	0.15	3E-7	6.522878745280337		    .24	[0.14-0.34] unit increase	Affymetrix [~2.5 million] (imputed)	N
05/26/2011	21493818	Shaw SY	04/21/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21493818	Genetic and clinical correlates of early-outgrowth colony-forming units.	Monocyte early outgrowth colony forming units	1,654 European ancestry individuals	NA	6q25.3	6	160368264	SLC22A, LPAL2, LPA	SLC22A3			6581			rs402219-G	rs402219	0	402219	intron	0	0.3	6E-7	6.221848749616355		    .19	[0.11-0.27] unit increase	Affymetrix [~2.5 million] (imputed)	N
05/26/2011	21493818	Shaw SY	04/21/2011	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/21493818	Genetic and clinical correlates of early-outgrowth colony-forming units.	Monocyte early outgrowth colony forming units	1,654 European ancestry individuals	NA	2p16.1	2	60054473	BCL11A	RNA5SP94 - MIR4432	100873327	100616473		      359.60	      332.89	rs6712720-C	rs6712720	0	6712720	Intergenic	1	0.49	4E-6	5.397940008672037		    .16	[0.08-0.24] unit increase	Affymetrix [~2.5 million] (imputed)	N
05/25/2011	21533074	Smedby KE	04/21/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533074	GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.	Follicular lymphoma	379 European ancestry cases, 791 European ancestry controls	1,049 European ancestry cases, 3,952 European ancestry controls	6p21.32	6	32696681	HLA-DQB1	TRNAI25			100189401			rs2647012-G	rs2647012	0	2647012		0	0.56	2E-21	20.69897000433602		   1.56	[1.43-1.72] 	Illumina [298,168]	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1q24.2	1	169508336	F5	SLC19A2 - F5	10560	2153		       22.37	        3.62	rs6687813-A	rs6687813	0	6687813	Intergenic	1	0.06	2E-14	13.69897000433602		  10.10	[2.7-17.9] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1p21.3	1	94587797	F3	F3 - KATNBL1P2	2152	100130235		       45.94	       62.76	rs12029080-G	rs12029080	0	12029080	Intergenic	1	0.31	6E-52	51.22184874961635		  10.40	[6.6-14.3] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	4q31.3	4	154593727	FGA, FGG	FGA - FGG	2243	2266		        2.98	       10.41	rs13109457-A	rs13109457	0	13109457	Intergenic	1	0.25	3E-18	17.52287874528034		   6.30	[2.3-10.4] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1p22.1	1	94145744	ABCA4, ARHGAP29	ABCA4 - ARHGAP29	24	9411		       24.60	       23.16	rs2774920-G	rs2774920	0	2774920	Intergenic	1	0.085	1E-6	5.999999999999999		    .05	[NR] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1q24.2	1	169165889	NME7	NME7			29922			rs16861990-C	rs16861990	0	16861990	intron	0	0.061	2E-6	5.698970004336018		    .06	[NR] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	5q13.2	5	73919412	RGNEF	ARHGEF28			64283			rs16871023-G	rs16871023	0	16871023	intron	0	0.046	1E-6	5.999999999999999		    .08	[NR] % decrease	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	9p21.3	9	24092074	Intergenic	ELAVL2 - IZUMO3	1993	100129669		      265.73	      451.12	rs4246856-C	rs4246856	0	4246856	Intergenic	1	0.201	6E-6	5.221848749616356		    .03	[NR] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	9q34.2	9	133261662	ABO	ABO			28			rs687621-G	rs687621	0	687621	intron	0	0.317	7E-6	5.154901959985742		    .03	[NR] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	11	46871557	LRP4	LRP4;LRP4-AS1			4038;100507401			rs2306029-C	rs2306029	0	2306029	missense;intron	0	0.448	8E-6	5.096910013008055		    .03	[NR] % decrease	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	11	47105602	C11orf49	C11orf49			79096			rs7117404-G	rs7117404	0	7117404	intron	0	0.153	9E-6	5.045757490560675		    .04	[NR] % decrease	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	11	48185707	PTPRJ	MIR3161 - OR4B1	100423000	119765		       88.85	       31.10	rs11039571-G	rs11039571	0	11039571	Intergenic	1	0.131	9E-6	5.045757490560675		    .04	[NR] % decrease	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	11	48360919	OR4C45	OR4C4P - OR4C5	79550	79346		        8.47	        4.48	rs1351696-G	rs1351696	0	1351696	Intergenic	1	0.135	8E-6	5.096910013008055		    .04	[NR] % decrease	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	16q23.3	16	82485623	CDH13	MPHOSPH6 - CDH13	10200	1012		      315.40	      141.17	rs1991867-C	rs1991867	0	1991867	Intergenic	1	0.111	4E-6	5.397940008672037		    .04	[NR] % decrease	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	18q22.1	18	65331539	Intergenic	LINC00305 - CDH7	221241	1005		     1182.51	      418.71	rs8083346-G	rs8083346	0	8083346	Intergenic	1	0.346	6E-6	5.221848749616356		    .03	[NR] % decrease	Affymetrix & Illumina [2,522,393] (imputed)	N
05/25/2011	21502573	Smith NL	04/21/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21502573	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	20q11.22	20	35176751	PROCR	PROCR			10544			rs867186-G	rs867186	0	867186	missense	0	0.091	4E-6	5.397940008672037		    .05	[NR] % increase	Affymetrix & Illumina [2,522,393] (imputed)	N
05/26/2011	21544081	Dorajoo R	04/19/2011	Int J Obes (Lond)	http://www.ncbi.nlm.nih.gov/pubmed/21544081	Replication of 13 obesity loci among Singaporean Chinese, Malay and Asian-Indian populations.	Obesity	5,429 Chinese anacestry individuals, 2,431 Malay ancestry individuals, 2,531 Asian Indian ancestry individuals	NA	16q12.2	16	53769662	FTO	FTO			79068			rs1558902-T	rs1558902	0	1558902	intron	0	NR	1E-7	7		    .09	[0.06-0.12] unit decrease	Illumina [1,283,957] (imputed)	N
05/13/2011	21505071	Li Z	04/19/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21505071	A genome-wide association study reveals association between common variants in an intergenic region of 4q25 and high-grade myopia in the Chinese Han population.	Myopia (pathological)	102 Han Chinese ancestry cases, 335 Han Chinese ancestry controls	2,891 Han Chinese ancestry cases, 10,071 Han Chinese ancestry controls	4q25	4	111690594	MYP11	RPL36AP23 - CCDC34P1	729075	100288584		      138.37	      377.41	rs10034228-?	rs10034228	0	10034228	Intergenic	1	0.50	8E-13	12.09691001300806		   1.23	[1.16-1.32] 	Affymetrix [681,783]	N
05/13/2011	21505071	Li Z	04/19/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21505071	A genome-wide association study reveals association between common variants in an intergenic region of 4q25 and high-grade myopia in the Chinese Han population.	Myopia (pathological)	102 Han Chinese ancestry cases, 335 Han Chinese ancestry controls	2,891 Han Chinese ancestry cases, 10,071 Han Chinese ancestry controls	4q25	4	111781479	MYP11	RPL36AP23 - CCDC34P1	729075	100288584		      229.25	      286.53	rs1585471-?	rs1585471	0	1585471	Intergenic	1	0.50	2E-6	5.698970004336018		   1.15	[1.09-1.22] 	Affymetrix [681,783]	N
05/26/2011	21502949	Stein JL	04/19/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21502949	Discovery and replication of dopamine-related gene effects on caudate volume in young and elderly populations (N=1198) using genome-wide search.	Caudate nucleus volume	734 European ancestry individuals	464 European ancestry individuals 	6p25.3	6	2235399	GMDS	GMDS			2762			rs9378688-A	rs9378688	0	9378688	intron	0	0.12	6E-6	5.221848749616356	(Left caudate)	 154.20	[87.56-220.84] mm3 decrease	Illumina [520,459]	N
05/26/2011	21502949	Stein JL	04/19/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21502949	Discovery and replication of dopamine-related gene effects on caudate volume in young and elderly populations (N=1198) using genome-wide search.	Caudate nucleus volume	734 European ancestry individuals	464 European ancestry individuals 	5q13.3	5	77485646	WDR41,PDE8B	WDR41			55255			rs163030-A	rs163030	0	163030	intron	0	0.50	2E-7	6.698970004336019	(Right caudate)	 117.50	[73.01-161.99] mm3 increase	Illumina [520,459]	N
05/25/2011	21505073	Terao C	04/19/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21505073	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	21q22.3	21	44289270	AIRE, PFKL	AIRE			326			rs2075876-A	rs2075876	0	2075876	intron	0	0.34	4E-9	8.397940008672036		   1.18	[1.11-1.24] 	Illumina [241,523]	N
05/25/2011	21505073	Terao C	04/19/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21505073	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	6p21.32	6	32251212	HLA locus	C6orf10			10665			rs9296015-?	rs9296015	0	9296015	intron	0	NR	2E-38	37.69897000433602		NR	NR	Illumina [241,523]	N
05/25/2011	21505073	Terao C	04/19/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21505073	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	1p36.13	1	17348042	PADI4	PADI4			23569			rs2240335-?	rs2240335	0	2240335	cds-synon	0	NR	2E-8	7.698970004336018		NR	NR	Illumina [241,523]	N
05/25/2011	21502966	Weber F	04/19/2011	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/21502966	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-&#x003b2; therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	6p21.32	6	32632222	HLA-DQA1, HLA-DRB1	TRNAI25			100189401			rs9272105-A	rs9272105	0	9272105		0	0.44	4E-10	9.397940008672037		    .26	[NR] unit increase	Illumina [~317,000]	N
05/25/2011	21502966	Weber F	04/19/2011	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/21502966	Single-nucleotide polymorphisms in HLA- and non-HLA genes associated with the development of antibodies to interferon-&#x003b2; therapy in multiple sclerosis patients.	Response to interferon beta therapy	178 European ancestry antibody-positive individuals, 184 European ancestry antibody-negative individuals	350 European ancestry antibody-positive individuals, 468 European ancestry antibody-negative individuals	8q24.3	8	141094845	DENND3, PTK2	RNA5SP278 - DENND3	100873531	22898		      154.18	       33.78	rs4961252-G	rs4961252	0	4961252	Intergenic	1	0.40	3E-8	7.522878745280337		    .23	[NR] unit increase	Illumina [~317,000]	N
05/11/2011	21499248	Kumar V	04/17/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21499248	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.32	6	32711222	HLA-DQ, HLA-DR	TRNAI25			100189401			rs9275572-A	rs9275572	0	9275572		0	0.36	6E-9	8.221848749616356		   1.30	[1.19-1.42] 	Illumina [432,703]	N
05/11/2011	21499248	Kumar V	04/17/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21499248	Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.	Hepatocellular carcinoma	721 Japanese ancestry cases, 2,890 Japanese ancestry controls	673 Japanese ancestry cases, 2,596 Japanese ancestry controls	6p21.33	6	31398818	MICA	MICA;LOC101929072			100507436;101929072			rs2596542-A	rs2596542	0	2596542	nearGene-5;intron	0	0.33	4E-13	12.39794000867204		   1.39	[1.27-1.52] 	Illumina [432,703]	N
05/24/2011	21499250	Spurdle AB	04/17/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21499250	Genome-wide association study identifies a common variant associated with risk of endometrial cancer.	Endometrial cancer	1,265 European ancestry cases, 5,190 European ancestry controls	3,957 European ancestry cases, 6,886 European ancestry controls	17q12	17	37738049	HNF1B	HNF1B			6928			rs4430796-A	rs4430796	0	4430796	intron	0	0.52	7E-10	9.154901959985741		   1.19	[1.12-1.27] 	Illumina [519,655]	N
05/24/2011	21499250	Spurdle AB	04/17/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21499250	Genome-wide association study identifies a common variant associated with risk of endometrial cancer.	Endometrial cancer	1,265 European ancestry cases, 5,190 European ancestry controls	3,957 European ancestry cases, 6,886 European ancestry controls	1p34.3	1	35222214	SFPQ	SFPQ - ZMYM4	6421	9202		       29.06	       46.64	rs673604-?	rs673604	0	673604	Intergenic	1	NR	6E-6	5.221848749616356		   1.21	[1.12-1.32] 	Illumina [519,655]	N
05/13/2011	21497890	Orange JS	04/15/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/21497890	Genome-wide association identifies diverse causes of common variable immunodeficiency.	Common variable immunodeficiency	179 European ancestry cases, 1,917 European ancestry controls	109 European ancestry cases, 1,114 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [610,000]	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	7q22.1	7	99521178	ZKSCAN5	ZKSCAN5			23660			rs11761528-T	rs11761528	0	11761528	intron	0	0.08	3E-36	35.52287874528034		    .16	[0.14-0.18] umol/L decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	19q13.33	19	47898636	SULT2A1	SULT2A1 - SNAR-A12	6822	100126800		       12.24	        9.04	rs2637125-A	rs2637125	0	2637125	Intergenic	1	0.15	3E-19	18.52287874528033		    .09	[0.07-0.11] umol/L decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	15q15.1	15	40068540	BMF	SRP14-AS1 - BMF	100131089	90427		        1.03	       19.35	rs7181230-G	rs7181230	0	7181230	Intergenic	1	0.33	5E-11	10.30102999566398		    .05	 [0.03-0.07 u mol/L increase	Affymetrix & Illumina [~2.5 million](imputed)	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	10q23.33	10	92725454	HHEX	HHEX - EXOC6	3087	54536		       29.80	      101.38	rs2497306-C	rs2497306	0	2497306	Intergenic	1	0.49	5E-9	8.301029995663981		    .04	[0.02-0.06] umol/L decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	10q23.33	10	94991513	CYP2C9	MTND4P20 - CYP2C59P	100873352	100874505		       50.02	       15.89	rs2185570-C	rs2185570	0	2185570	Intergenic	1	0.13	2E-8	7.698970004336018		    .06	[0.04-0.08] u mol/L decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	7q22.1	7	99891948	TRIM4, CYP3A43	TRIM4			89122			rs17277546-A	rs17277546	0	17277546	UTR-3	0	0.05	2E-11	10.69897000433602		    .11	[0.07-0.15] umol/L decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	2q13	2	111191750	BCL2L11	BCL2L11 - RPS14P4	10018	100132382		       23.31	      103.81	rs6738028-G	rs6738028	0	6738028	Intergenic	1	0.40	2E-8	7.698970004336018		    .04	[0.02-0.06] umol/L decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
05/26/2011	21533175	Zhai G	04/14/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21533175	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	7q22.1	7	99360257	ARPC1A	ARPC1A			10552			rs740160-T	rs740160	0	740160	intron	0	0.05	2E-16	15.69897000433602		    .15	[0.11-0.19] umol/L increase	Affymetrix & Illumina [~2.5 million](imputed)	N
05/11/2011	21483430	Carless MA	04/12/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21483430	Impact of DISC1 variation on neuroanatomical and neurocognitive phenotypes.	Neuranatomic and neurocognitive phenotypes	857 Mexican American individuals	NA	1q42.2	1	231681096	DISC1	DISC1;TSNAX-DISC1			27185;100303453			rs12042938-C	rs12042938	0	12042938	intron;intron	0	0.48	4E-36	35.39794000867203		NR	NR	Illumina [543,031]	N
05/27/2011	21570397	Lucena MI	04/12/2011	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/21570397	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p21.32	6	32665055	HLA-DRB1-DQB1	HLA-DQB1			3119			rs9274407-?	rs9274407	0	9274407	missense	0	NR	5E-14	13.30102999566398		   3.10	[2.30-4.20] 	Illumina [822,927]	N
05/27/2011	21570397	Lucena MI	04/12/2011	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/21570397	Susceptibility to amoxicillin-clavulanate-induced liver injury is influenced by multiple HLA class I and II alleles.	Drug-induced liver injury (amoxicillin-clavulanate)	201 European ancestry cases, 532 European ancestry controls	NA	6p22.1	6	29860883	HLA-A	TRNAI25			100189401			rs2523822-?	rs2523822	0	2523822		0	NR	2E-10	9.698970004336017		   2.30	[1.80-2.90] 	Illumina [822,927]	N
05/11/2011	21483023	Wu X	04/11/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21483023	Genome-wide association study of survival in non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	327 European ancestry individuals	735 European ancestry individuals	12q23.3	12	108305255	CMKLR1	CMKLR1			1240			rs1878022-?	rs1878022	0	1878022	intron	0	NR	5E-7	6.30102999566398		   1.33	[1.19-1.48] 	Illumina [307,260]	N
05/11/2011	21478494	Nan H	04/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21478494	Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk.	Cutaneous nevi	9,136 European ancestry individuals	3,581 European ancestry individuals	1q42.3	1	236016569	NID1	NID1			4811			rs3768080-A	rs3768080	0	3768080	intron	0	0.51	7E-8	7.154901959985742		    .07	[0.05-0.09] unit decrease	Affymetrix and Illumina [2,318,094] (imputed)	N
05/11/2011	21478494	Nan H	04/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21478494	Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk.	Cutaneous nevi	9,136 European ancestry individuals	3,581 European ancestry individuals	11p12	11	37849431	C11orf74	RPL7AP56 - RPL18P8	100271536	100129670		      122.94	     1312.01	rs16930685-C	rs16930685	0	16930685	Intergenic	1	0.10	2E-6	5.698970004336018		    .10	[0.06-0.14] unit increase	Affymetrix and Illumina [2,318,094] (imputed)	N
05/11/2011	21478494	Nan H	04/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21478494	Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk.	Cutaneous nevi	9,136 European ancestry individuals	3,581 European ancestry individuals	22q13.1	22	38172999	PLA2G6	PLA2G6			8398			rs738322-G	rs738322	0	738322	intron	0	0.46	1E-6	5.999999999999999		    .06	[0.04-0.08] unit decrease	Affymetrix and Illumina [2,318,094] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	7p21.1	7	17244953	AHR	RAD17P1 - AHR	9207	196		      378.58	       53.70	rs4410790-T	rs4410790	0	4410790	Intergenic	1	0.38	2E-19	18.69897000433602		    .15	[0.11-0.19] mg/day decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	15q24.1	15	74727108	LMAN1L, EDC3, CYP1A2, CYP1A1, CSK	CYP1A1			1543			rs2470893-T	rs2470893	0	2470893	nearGene-5	0	0.31	5E-14	13.30102999566398		    .12	[0.08-0.16] mg/day increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	15q24.1	15	74833304	ULK3, SCAMP2, MP1, LMAN1L, CYP1A2, CSK, COX5A, CPLX3, C14orf17	CPLX3 - ULK3	594855	25989		        1.51	        2.81	rs6495122-A	rs6495122	0	6495122	Intergenic	1	0.43	6E-7	6.221848749616355		    .07	[0.05-0.09] mg/day decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	15q24.2	15	75090201	SCAMP5, PPCDC	PPCDC - RPL36AP45	60490	441727		       39.48	       96.45	rs12148488-T	rs12148488	0	12148488	Intergenic	1	0.50	6E-7	6.221848749616355		    .07	[0.05-0.09] mg/day decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	14q24.3	14	74856091	NR	PROX2			283571			rs8014204-A	rs8014204	0	8014204	intron	0	0.53	5E-6	5.301029995663981		    .07	[0.04-0.10] mg/day increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	16q24.3	16	89784625	NR	FANCA			2175			rs16966142-T	rs16966142	0	16966142	intron	0	0.08	6E-6	5.221848749616356		    .12	[0.07-0.17] mg/day increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	4q22.1	4	87997954	Intergenic	SPP1 - PKD2	6696	5311		       14.54	        9.69	rs2725236-A	rs2725236	0	2725236	Intergenic	1	0.48	5E-6	5.301029995663981		    .07	[0.04-0.10] mg/day decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	5q21.3	5	105532235	NR	RAB9BP1 - RNA5SP189	9366	100873451		      432.14	      390.76	rs7447447-T	rs7447447	0	7447447	Intergenic	1	0.13	7E-6	5.154901959985742		    .15	[0.08-0.22] mg/day increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	15q24.1	15	74751897	CYP1A2	CYP1A2			1544			rs2472304-A	rs2472304	0	2472304	intron	0	0.65	3E-7	6.522878745280337		    .08	[0.06-0.10] mg/day increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/26/2011	21490707	Cornelis MC	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490707	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NR	7q11.23	7	73441939	NR	BAZ1B			9031			rs2240466-A	rs2240466	0	2240466	intron	0	0.12	1E-6	5.999999999999999		    .11	[0.07-0.15] mg/day increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/11/2011	21473668	Fliers EA	04/07/2011	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21473668	Genome-wide association study of motor coordination problems in ADHD identifies genes for brain and muscle function.	Attention deficit hyperactivity disorder motor coordination	890 European ancestry children	296 European ancestry children	4p15.1	4	29901430	Intergenic	EEF1A1P21 - RPS3AP17	100421807	100271130		      151.33	       61.61	rs7442317-?	rs7442317	0	7442317	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Perlegen [384,401]	N
05/26/2011	21471979	Kumar V	04/07/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21471979	Common variants on 14q32 and 13q12 are associated with DLBCL susceptibility.	Large B-cell lymphoma	74 Japanese ancestry cases, 934 Japanese ancestry controls	325 Japanese ancestry cases, 3,309 Japanese ancestry controls	13q12.2	13	27623299	LNX2	POLR1D			51082			rs7097-?	rs7097	0	7097	intron	0	NR	7E-6	5.154901959985742		   1.44	[1.23-1.67] 	Illumina [444,361]	N
05/26/2011	21471979	Kumar V	04/07/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21471979	Common variants on 14q32 and 13q12 are associated with DLBCL susceptibility.	Large B-cell lymphoma	74 Japanese ancestry cases, 934 Japanese ancestry controls	325 Japanese ancestry cases, 3,309 Japanese ancestry controls	14q32.32	14	103018488	CDC42BPB	CDC42BPB			9578			rs751837-?	rs751837	0	751837	intron	0	NR	3E-7	6.522878745280337		   3.51	[2.13-5.88] 	Illumina [444,361]	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	15q24.3	15	77485290	HMG20A	HMG20A			10363			rs7119-T	rs7119	0	7119	UTR-3	0	0.19	5E-7	6.30102999566398	(Chinese+Malay+Indian)	   1.24	[1.14-1.34] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	3q12.3	3	102484201	ZPLD1	ZPLD1 - NDUFA4P2	131368	100287880		        4.36	      756.79	rs2063640-A	rs2063640	0	2063640	Intergenic	1	0.17	3E-6	5.522878745280337	(Chinese+Malay+Indian)	   1.23	[1.13-1.34] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	21q22.11	21	32012873	HUNK	HUNK - LINC00159	30811	100551499		        8.81	       67.61	rs2833610-A	rs2833610	0	2833610	Intergenic	1	0.57	4E-6	5.397940008672037	(Chinese+Malay+Indian)	   1.17	[1.09-1.24] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	10q23.33	10	92588073	KIF11	IDE - KIF11	3416	3832		       13.98	        5.00	rs6583826-G	rs6583826	0	6583826	Intergenic	1	0.26	7E-6	5.154901959985742	(Chinese+Malay+Indian)	   1.18	[1.10-1.27] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	6p22.3	6	20652486	CDKAL1	CDKAL1			54901			rs9295474-G	rs9295474	0	9295474	intron	0	0.36	9E-6	5.045757490560675	(Chinese+Malay+Indian)	   1.16	[1.09-1.24] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	3q26.33	3	179943530	PEX5L	PEX5L			51555			rs7630877-A	rs7630877	0	7630877	intron	0	0.17	7E-6	5.154901959985742	(Chinese)	   1.32	[1.17-1.49] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	1q42.2	1	233204408	PCNXL2	PCNXL2;LOC101927736			80003;101927736			rs12027542-A	rs12027542	0	12027542	intron;intron	0	0.61	4E-7	6.397940008672037	(Malay)	   1.41	[1.23-1.61] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	1q32.2	1	207478831	CR2	CR2			1380			rs17045328-G	rs17045328	0	17045328	intron	0	0.30	7E-6	5.154901959985742	(Malay)	   1.38	[1.20-1.59] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	18p11.31	18	2948031	LPIN2	LPIN2;LOC727896			9663;727896			rs10460009-C	rs10460009	0	10460009	intron;nearGene-5	0	0.60	9E-6	5.045757490560675	(Malay)	   1.35	[1.18-1.54] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	6q13	6	70579486	C6orf57	C6orf57			135154			rs1048886-G	rs1048886	0	1048886	missense	0	0.18	3E-8	7.522878745280337	(Indian)	   1.54	[1.32-1.80] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	6q24.1	6	139952510	Intergenic	ATP5F1P6 - RNA5SP220	645440	100873480		      337.31	      206.08	rs642858-A	rs642858	0	642858	Intergenic	1	0.40	2E-6	5.698970004336018	(Indian)	   1.35	[1.19-1.53] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	2p25.3	2	3793830	Intergenic	DCDC2C			728597			rs11677370-T	rs11677370	0	11677370	intron	0	0.40	3E-6	5.522878745280337	(Indian)	   1.35	[1.19-1.53] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	7q22.1	7	100892456	ACHE	ACHE			43			rs7636-A	rs7636	0	7636	cds-synon	0	0.06	5E-6	5.301029995663981	(Indian)	   1.85	[1.42-2.41] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	10q26.3	10	131149699	TCERG1L	TCERG1L			256536			rs10741243-G	rs10741243	0	10741243	intron	0	0.93	5E-6	5.301029995663981	(Indian)	   1.75	[1.38-2.23] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	3q23	3	142712158	PLS1	PLS1			5357			rs3773506-C	rs3773506	0	3773506	UTR-3	0	0.06	9E-6	5.045757490560675	(Indian)	   1.81	[1.39-2.35] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	19q13.2	19	39090097	FLJ16165	PAPL			390928			rs472265-G	rs472265	0	472265	intron	0	0.22	9E-6	5.045757490560675	(Indian)	   1.39	[1.20-1.61] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21490949	Sim X	04/07/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21490949	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	4q32.3	4	163611649	MARCH1	MARCH1			55016			rs3792615-T	rs3792615	0	3792615	intron	0	0.95	9E-6	5.045757490560675	(Indian)	   1.93	[1.45-2.59] 	Illumina [~2,000,000] (imputed)	N
05/24/2011	21471458	Schumann G	04/06/2011	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/21471458	Genome-wide association and genetic functional studies identify autism susceptibility candidate 2 gene (AUTS2) in the regulation of alcohol consumption.	Alcohol consumption	26,316 European ancestry individuals	21,185 European ancestry individuals	7q11.22	7	70341037	AUTS2	AUTS2			26053			rs6943555-A	rs6943555	0	6943555	intron	0	0.24	4E-8	7.397940008672037	(quantile transformation)	    .01	[-0.003-0.028] unit decrease	Affymetrix, Illumina, and Perlegen [~2.5 million] (imputed)	N
05/20/2011	21467234	FitzGerald LM	04/05/2011	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/21467234	Genome-wide association study identifies a genetic variant associated with risk for more aggressive prostate cancer.	Prostate cancer	202 European ancestry more aggressive cases, 100 European ancestry controls	527 European ancestry more aggressive cases, 595 European ancestry less aggressive cases, 1,167 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [387,384]	N
05/02/2011	21460842	Cha PC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460842	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	10q24.33	10	103954641	SLK, OBFC1	LOC102724351			102724351			rs7913069-A	rs7913069	0	7913069	intron	0	0.07	9E-14	13.04575749056067		   1.47	[1.23-1.75] 	Illumina [457,044]	N
05/02/2011	21460842	Cha PC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460842	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	22q13.1	22	40256869	TNRC6B	TNRC6B			23112			rs12484776-G	rs12484776	0	12484776	intron	0	0.36	3E-12	11.52287874528034		   1.23	[1.11-1.37] 	Illumina [457,044]	N
05/02/2011	21460842	Cha PC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460842	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	11p15.5	11	203788	ODF3, BET1L, RIC8A, SIRT3	BET1L			51272			rs2280543-G	rs2280543	0	2280543	UTR-3	0	0.88	4E-12	11.39794000867204		   1.39	[1.17-1.64] 	Illumina [457,044]	N
05/02/2011	21460842	Cha PC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460842	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	2p16.1	2	59055456	NR	LINC01122			400955			rs991964-A	rs991964	0	991964	intron	0	0.34	9E-6	5.045757490560675		   1.15	[1.03-1.28] 	Illumina [457,044]	N
05/02/2011	21460842	Cha PC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460842	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	12q23.2	12	102731912	NR	IGF1 - LINC00485	3479	283432		      251.31	       77.37	rs2172873-A	rs2172873	0	2172873	Intergenic	1	0.22	2E-6	5.698970004336018		   1.18	[1.04-1.34] 	Illumina [457,044]	N
05/02/2011	21460840	Hollingworth P	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460840	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	19p13.3	19	1046521	ABCA7	ABCA7			10347			rs3764650-?	rs3764650	0	3764650	intron	0	0.10	5E-17	16.30102999566398		   1.23	[1.18-1.30] 	Affymetrix & Illumina [496,763]	N
05/02/2011	21460840	Hollingworth P	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460840	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	11q12.2	11	60171834	MS4A6A, MS4A4E	MS4A6A			64231			rs610932-?	rs610932	0	610932	UTR-3	0	0.58	2E-14	13.69897000433602		   1.11	[1.09-1.15] 	Affymetrix & Illumina [496,763]	N
05/02/2011	21460840	Hollingworth P	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460840	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	1q32.2	1	207611623	CR1	CR1			1378			rs3818361-?	rs3818361	0	3818361	intron	0	0.19	4E-14	13.39794000867204		   1.18	[1.13-1.24] 	Affymetrix & Illumina [496,763]	N
05/02/2011	21460840	Hollingworth P	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460840	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	2q14.3	2	127137039	BIN1	BIN1 - CYP27C1	274	339761		       29.71	       46.80	rs744373-?	rs744373	0	744373	Intergenic	1	0.29	3E-14	13.52287874528034		   1.17	[1.12-1.21] 	Affymetrix & Illumina [496,763]	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	6p12.3	6	47485642	CD2AP	CD2AP			23607			rs9349407-C	rs9349407	0	9349407	intron	0	0.27	9E-9	8.045757490560675		   1.11	[1.07-1.15] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	7q35	7	143412046	EPHA1	EPHA1-AS1			285965			rs11767557-?	rs11767557	0	11767557	intron	0	0.81	6E-10	9.221848749616356		   1.11	[1.08-1.16] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	11q12.2	11	60266956	MS4A4A	MIR6503 - MS4A4A	102465250	51338		       57.80	       13.59	rs4938933-?	rs4938933	0	4938933	Intergenic	1	0.61	8E-12	11.09691001300806		   1.12	[1.09-1.15] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	19q13.41	19	51224706	CD33	CD33			945			rs3865444-?	rs3865444	0	3865444	nearGene-5	0	0.70	2E-9	8.698970004336019		   1.10	[1.08-1.14] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	1q32.2	1	207612944	CR1	CR1			1378			rs6701713-A	rs6701713	0	6701713	intron	0	0.20	5E-10	9.301029995663981		   1.16	[1.11-1.22] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	2q14.3	2	127132061	BIN1	BIN1 - CYP27C1	274	339761		       24.73	       51.78	rs7561528-A	rs7561528	0	7561528	Intergenic	1	0.35	4E-14	13.39794000867204		   1.17	[1.13-1.22] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	8p21.1	8	27608798	CLU	CLU			1191			rs1532278-?	rs1532278	0	1532278	intron	0	0.64	8E-8	7.096910013008055		   1.12	[1.08-1.18] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	11q14.2	11	86089237	PICALM	PICALM - FNTAP1	8301	283226		       19.36	      105.89	rs561655-?	rs561655	0	561655	Intergenic	1	0.66	7E-11	10.15490195998574		   1.15	[1.10-1.19] 	Affymetrix & Illumina [2,324,889] (imputed)	N
05/24/2011	21460841	Naj AC	04/03/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21460841	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	19p13.3	19	1056493	ABCA7	ABCA7			10347			rs3752246-G	rs3752246	0	3752246	missense	0	0.19	6E-7	6.221848749616355		   1.15	[1.09-1.21] 	Affymetrix & Illumina [2,324,889] (imputed)	N
04/29/2011	21460395	Gu J	04/02/2011	Cancer Prev Res (Phila)	http://www.ncbi.nlm.nih.gov/pubmed/21460395	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 Other ancestry individuals	1,160 Other ancestry individuals	20q12	20	39500359	DHX35	ATG3P1 - HSPE1P1	100135756	140895		      170.36	      432.56	rs6028466-?	rs6028466	0	6028466	Intergenic	1	NR	3E-7	6.522878745280337		    .19	[NR] unit increase	Illumina [312,531]	N
04/29/2011	21460395	Gu J	04/02/2011	Cancer Prev Res (Phila)	http://www.ncbi.nlm.nih.gov/pubmed/21460395	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 Other ancestry individuals	1,160 Other ancestry individuals	1p34.2	1	43179740	WDR65	WDR65			149465			rs621559-?	rs621559	0	621559	intron	0	NR	2E-6	5.698970004336018		    .16	[NR] unit increase	Illumina [312,531]	N
04/29/2011	21460395	Gu J	04/02/2011	Cancer Prev Res (Phila)	http://www.ncbi.nlm.nih.gov/pubmed/21460395	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 Other ancestry individuals	1,160 Other ancestry individuals	14q22.3	14	56058851	PELI2	LINC00520 - PELI2	645687	57161		      262.18	       59.52	rs398652-?	rs398652	0	398652	Intergenic	1	NR	2E-6	5.698970004336018		    .12	[NR] unit increase	Illumina [312,531]	N
04/29/2011	21460395	Gu J	04/02/2011	Cancer Prev Res (Phila)	http://www.ncbi.nlm.nih.gov/pubmed/21460395	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 Other ancestry individuals	1,160 Other ancestry individuals	6q22.1	6	116765215	KPNA5	FAM162B			221303			rs654128-?	rs654128	0	654128	missense	0	NR	3E-6	5.522878745280337		    .12	[NR] unit increase	Illumina [312,531]	N
04/29/2011	21452313	Freudenberg J	04/01/2011	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/21452313	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	8p23.1	8	11502129	BLK	BLK			640			rs1600249-?	rs1600249	0	1600249	intron	0	0.67	5E-6	5.301029995663981		   1.30	[1.16-1.45] 	Illumina [441,398]	N
04/29/2011	21452313	Freudenberg J	04/01/2011	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/21452313	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	12q21.1	12	72330254	TRHDE	TRHDE			29953			rs12831974-?	rs12831974	0	12831974	intron	0	0.42	6E-6	5.221848749616356		   1.27	[1.14-1.40] 	Illumina [441,398]	N
04/29/2011	21452313	Freudenberg J	04/01/2011	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/21452313	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	3p14.3	3	56932218	ARHGEF3	ARHGEF3			50650			rs2062583-?	rs2062583	0	2062583	intron	0	0.90	2E-6	5.698970004336018		   1.59	[1.30-1.92] 	Illumina [441,398]	N
04/29/2011	21452313	Freudenberg J	04/01/2011	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/21452313	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	6p21.32	6	32713151	HLA-DRB1	TRNAI25			100189401			rs7765379-?	rs7765379	0	7765379		0	NR	5E-23	22.30102999566398		   2.51	[NR] 	Illumina [441,398]	N
04/29/2011	21452313	Freudenberg J	04/01/2011	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/21452313	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	1p36.13	1	17348042	PADI4	PADI4			23569			rs2240335-?	rs2240335	0	2240335	cds-synon	0	0.397	2E-8	7.698970004336018		   1.50	[NR] 	Illumina [441,398]	N
04/29/2011	21459883	Villard E	04/01/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/21459883	A genome-wide association study identifies two loci associated with heart failure due to dilated cardiomyopathy.	Dilated cardiomyopathy	1,179 European ancestry cases, 1,108 European ancestry controls	1,165 European ancestry cases, 1,302 European ancestry controls	10q26.11	10	119670121	BAG3	BAG3			9531			rs2234962-?	rs2234962	0	2234962	missense	0	NR	4E-12	11.39794000867204		   1.52	[1.22-1.89] 	Illumina [517,382](pooled)	N
04/29/2011	21459883	Villard E	04/01/2011	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/21459883	A genome-wide association study identifies two loci associated with heart failure due to dilated cardiomyopathy.	Dilated cardiomyopathy	1,179 European ancestry cases, 1,108 European ancestry controls	1,165 European ancestry cases, 1,302 European ancestry controls	1p36.13	1	15972817	ZBTB17	ZBTB17			7709			rs10927875-?	rs10927875	0	10927875	intron	0	NR	1E-9	8.999999999999998		   1.32	[1.19-1.43] 	Illumina [517,382](pooled)	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron deficiency	336 European ancestry cases, 343 European ancestry controls	71 European ancestry cases, 161 European ancestry controls	22q11.22	22	22158022	Intergenic	IGL			3535			rs987710-?	rs987710	0	987710		0	NR	1E-6	5.999999999999999	(Case-control)	   1.67	[NR] 	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	2p14	2	64276761	Intergenic	LINC00309 - MIR4433B	150992	102465833		       71.28	       63.99	rs2698530-C	rs2698530	0	2698530	Intergenic	1	NR	4E-6	5.397940008672037	(Transferrin saturation)	  20.00	[NR] unit decrease	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	2p14	2	64276761	Intergenic	LINC00309 - MIR4433B	150992	102465833		       71.28	       63.99	rs2698530-C	rs2698530	0	2698530	Intergenic	1	NR	2E-7	6.698970004336019	(Total iron-binding capacity)	  20.72	[NR] ug/dL increase	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	2p14	2	64276761	Intergenic	LINC00309 - MIR4433B	150992	102465833		       71.28	       63.99	rs2698530-C	rs2698530	0	2698530	Intergenic	1	NR	1E-7	7	(Unsaturated iron-binding capacity)	  28.75	[NR] ug/dL increase	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	3q22.1	3	133765185	TF	TF			7018			rs3811647-A	rs3811647	0	3811647	intron	0	NR	5E-10	9.301029995663981	(Total iron-binding capacity)	  21.49	[NR] ug/dL increase	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	3q22.1	3	133765185	TF	TF			7018			rs3811647-A	rs3811647	0	3811647	intron	0	NR	8E-6	5.096910013008055	(Unsaturated iron-binding capacity)	  21.62	[NR] ug/dL increase	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	3E-8	7.522878745280337	(Total iorn-binding capacity)	  35.36	[NR] ug/dL decrease	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	6E-10	9.221848749616356	(Unsaturated iron-binding capacity)	  44.27	[NR] ug/dL decrease	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	22q11.22	22	22158022	Intergenic	IGL			3535			rs987710-G	rs987710	0	987710		0	NR	5E-7	6.30102999566398	(Body iron)	   2.01	[NR] unit increase	Illumina [331,060]	N
04/24/2013	21483845	McLaren CE	03/31/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21483845	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	22q11.22	22	22158022	Intergenic	IGL			3535			rs987710-G	rs987710	0	987710		0	NR	1E-6	5.999999999999999	(Serum ferritin concentration)	    .44	[NR] unit increase	Illumina [331,060]	N
04/13/2011	21448238	Ligthart L	03/30/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21448238	Meta-analysis of genome-wide association for migraine in six population-based European cohorts.	Migraine	2,116 European ancestry cases, 7,318 European ancestry controls, 330 Dutch founder cases, 1,216 Dutch founder controls	2,957 European ancestry cases, 5,774 European ancestry controls	15q25.3	15	87152280	AGBL1	AGBL1-AS1 - LINC00052	727915	145978		      835.31	      424.65	rs11636768-A	rs11636768	0	11636768	Intergenic	1	0.15	5E-7	6.30102999566398		   1.25	[NR] 	Affymetrix, Illumina & Perlegen [~2.5 million] (imputed)	N
04/13/2011	21448238	Ligthart L	03/30/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21448238	Meta-analysis of genome-wide association for migraine in six population-based European cohorts.	Migraine	2,116 European ancestry cases, 7,318 European ancestry controls, 330 Dutch founder cases, 1,216 Dutch founder controls	2,957 European ancestry cases, 5,774 European ancestry controls	22q11.23	22	23580796	IGLL1	IGLL1;LOC102724759			3543;102724759			rs140174-G	rs140174	0	140174	nearGene-5;nearGene-3	0	0.26	8E-6	5.096910013008055		   1.08	[NR] 	Affymetrix, Illumina & Perlegen [~2.5 million] (imputed)	N
04/13/2011	21441931	Okamoto K	03/27/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441931	Common variation in GPC5 is associated with acquired nephrotic syndrome.	Nephrotic syndrome (acquired)	195 Japanese ancestry cases, 1,546 Japanese ancestry controls	662 Japanese ancestry cases, 4,919 Japanese ancestry controls	13q31.3	13	91551559	GPC5	GPC5			2262			rs16946160-A	rs16946160	0	16946160	intron	0	0.17	3E-7	6.522878745280337		   1.39	[1.22-1.57] 	Perlegen [205,203]	N
04/13/2011	21441931	Okamoto K	03/27/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441931	Common variation in GPC5 is associated with acquired nephrotic syndrome.	Nephrotic syndrome (acquired)	195 Japanese ancestry cases, 1,546 Japanese ancestry controls	662 Japanese ancestry cases, 4,919 Japanese ancestry controls	20q13.13	20	48150492	SULF2, PREX1	RNA5SP486 - LINC00494	100873728	284749		      277.22	      209.42	rs11086243-T	rs11086243	0	11086243	Intergenic	1	0.23	3E-6	5.522878745280337		   1.37	[1.20-1.57] 	Perlegen [205,203]	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	1q44	1	244013122	AKT3, ZNF238	LOC339529			339529			rs476141-A	rs476141	0	476141	intron	0	0.51	1E-7	7		   1.37	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	16p13.3	16	7365551	A2BP1, LOC100131413, LOC100131080	RBFOX1			54715			rs4787008-G	rs4787008	0	4787008	intron	0	0.17	6E-7	6.221848749616355		   1.47	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	3q25.31	3	157136953	LEKR1, CCNL1	LINC00881 - CCNL1	100498859	57018		       35.82	        9.41	rs13064954-G	rs13064954	0	13064954	Intergenic	1	0.04	7E-7	6.154901959985743		   1.02	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	3q25.31	3	157232790	KRT18P34, VEPH1	LOC101928236			101928236			rs9866141-T	rs9866141	0	9866141	intron	0	0.04	9E-7	6.045757490560675		   1.02	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	5q34	5	166962488	LOC441114, ODZ2	CTB-7E3.1 - TENM2	102557615	57451		       36.12	       16.59	rs17404956-A	rs17404956	0	17404956	Intergenic	1	0.90	1E-6	5.999999999999999		   1.16	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	1q44	1	244010570	AKT3, ZNF238	LOC339529			339529			rs10927101-A	rs10927101	0	10927101	intron	0	0.38	2E-6	5.698970004336018		   1.33	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	19q12	19	29588697	VSTM2B	VSTM2B - POP4	342865	10775		       24.15	       17.57	rs10403021-C	rs10403021	0	10403021	Intergenic	1	0.66	2E-6	5.698970004336018		   1.01	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	16q24.1	16	86331965	IRF8, LOC732275	LINC00917			732275			rs2696835-C	rs2696835	0	2696835	ncRNA	0	0.03	3E-6	5.522878745280337		   2.27	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	19p13.2	19	7196554	INSR, LOC100131165, LOC100128567	INSR			3643			rs2115386-C	rs2115386	0	2115386	intron	0	0.55	3E-6	5.522878745280337		   1.12	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	6q25.1	6	149113975	LOC729200, MAP3K7IP2	UST - TAB2	10090	23118		       36.99	      204.33	rs7772697-T	rs7772697	0	7772697	Intergenic	1	0.58	3E-6	5.522878745280337		   1.35	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	2p25.3	2	2515741	MYT1L, LOC7029897	MYT1L-AS1 - LINC01250	730811	101927554		      188.63	      379.31	rs10199521-T	rs10199521	0	10199521	Intergenic	1	0.22	3E-6	5.522878745280337		   1.46	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	18q21.2	18	55195877	CCDC68, TCF4	RNA5SP459 - TCF4	100873703	6925		       49.23	       26.45	rs1970671-G	rs1970671	0	1970671	Intergenic	1	0.29	3E-6	5.522878745280337		   1.37	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	1q25.1	1	173332377	TNFSF4, LOC730070	LOC100506023			100506023			rs1342038-G	rs1342038	0	1342038	intron	0	0.64	4E-6	5.397940008672037		   1.49	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	1p34.3	1	36439119	C1orf102, LSCM10, MRPS15	OSCP1			127700			rs6702784-C	rs6702784	0	6702784	intron	0	0.07	4E-6	5.397940008672037		   1.08	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	1p36.13	1	18468761	IGSF21, KLHDC7A	IGSF21 - KLHDC7A	84966	127707		       90.28	       12.17	rs3007729-T	rs3007729	0	3007729	Intergenic	1	0.65	5E-6	5.301029995663981		   1.35	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	1q42.2	1	233508110	KIAA1804, KCNK1	KIAA1804 - KCNK1	84451	3775		      122.96	      105.89	rs10910200-G	rs10910200	0	10910200	Intergenic	1	0.25	6E-6	5.221848749616356		   1.35	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	7p15.1	7	28351523	CREB5, tcag7.873, LOC401317	CREB5			9586			rs11765845-A	rs11765845	0	11765845	intron	0	0.29	7E-6	5.154901959985742		   1.02	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	17p11.2	17	17030090	LOC100128283, TNFRSF13B, MPRIP	TNFRSF13B - MPRIP	23495	23164		       58.00	       12.39	rs11867934-C	rs11867934	0	11867934	Intergenic	1	0.79	7E-6	5.154901959985742		   1.43	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21441570	Grassi MA	03/26/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21441570	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy 	973 European ancestry cases, 1,856 European ancestry controls	NA	5q23.2	5	125983763	LOC100130551, GRAMD3	RPSAP37 - GRAMD3	100270915	65983		       16.26	      376.33	rs1073203-G	rs1073203	0	1073203	Intergenic	1	0.13	9E-6	5.045757490560675		   1.54	[NR] 	Affymetrix & Illumina [2,543,887] (imputed)	N
04/13/2011	21396408	Miller EK	03/25/2011	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/21396408	Atopy history and the genomics of wheezing after influenza vaccination in children 6-59 months of age.	Vaccine-related adverse events 	6 European ancestry cases,55 European ancestry controls	NA	1q23.2	1	159740727	Intergenic	CRP - RPL27P2	1401	646446		       26.14	       18.42	rs11265263-?	rs11265263	0	11265263	Intergenic	1	0.04	3E-6	5.522878745280337	(wheezing)	NR	NR	Illumina [468,458]	N
04/13/2011	21396408	Miller EK	03/25/2011	Vaccine	http://www.ncbi.nlm.nih.gov/pubmed/21396408	Atopy history and the genomics of wheezing after influenza vaccination in children 6-59 months of age.	Vaccine-related adverse events 	6 European ancestry cases,55 European ancestry controls	NA	7p11.2	7	54114239	Intergenic	FLJ45974 - HPVC1	401337	3262		      302.31	       86.99	rs6593122-?	rs6593122	0	6593122	Intergenic	1	0.11	4E-6	5.397940008672037	(influenza)	NR	NR	Illumina [468,458]	N
04/13/2011	21423239	Willour VL	03/25/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21423239	A genome-wide association study of attempted suicide.	Suicide attempts in bipolar disorder	1,201 European and unknown ancestry attempters, 1,497 European and unknown ancestry non-attempters	1,295 attempters, 1,822 non-attempters	2p25.3	2	112496	Intergenic	FAM110C - SH3YL1	642273	26751		       65.90	      105.64	rs300774-A	rs300774	0	300774	Intergenic	1	0.18	5E-8	7.30102999566398		   1.22	[NR] 	Affymetrix & Illumina [2,408,051] (imputed)	N
04/13/2011	21423239	Willour VL	03/25/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21423239	A genome-wide association study of attempted suicide.	Suicide attempts in bipolar disorder	1,201 European and unknown ancestry attempters, 1,497 European and unknown ancestry non-attempters	1,295 attempters, 1,822 non-attempters	11p13	11	33566664	C11orf41	KIAA1549L			25758			rs10437629-?	rs10437629	0	10437629	intron	0	NR	4E-6	5.397940008672037		   1.34	[NR] 	Affymetrix & Illumina [2,408,051] (imputed)	N
04/13/2011	21423239	Willour VL	03/25/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21423239	A genome-wide association study of attempted suicide.	Suicide attempts in bipolar disorder	1,201 European and unknown ancestry attempters, 1,497 European and unknown ancestry non-attempters	1,295 attempters, 1,822 non-attempters	12q24.32	12	128610527	TMEM132C	TMEM132C			92293			rs7296262-T	rs7296262	0	7296262	intron	0	0.51	1E-6	5.999999999999999		   1.22	[NR] 	Affymetrix & Illumina [2,408,051] (imputed)	N
04/13/2011	21428769	McCormack M	03/24/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21428769	HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans.	Adverse response to carbamapezine	65 European ancestry cases, 3,987 European ancestry controls	80 European ancestry cases, 257 European ancestry controls	6p22.1	6	29945521	HLA-A*3101	HLA-A			3105			rs1061235-?	rs1061235	0	1061235	ncRNA	0	NR	1E-7	7		   9.12	[4.03-20.65] 	Illumina [~1.2 million] (imputed)	N
04/23/2013	21418511	Deelen J	03/21/2011	Aging Cell	http://www.ncbi.nlm.nih.gov/pubmed/21418511	Genome-wide association study identifies a single major locus contributing to survival into old age; the APOE locus revisited.	Longevity	403 European ancestry cases, 1,670 European ancestry controls	1,578 European ancestry cases, 1,997 European ancestry controls, 1,208 Other ancestry cases, 2,090 Other ancestry controls, 960 cases, 1,825 controls	19q13.32	19	44892362	TOMM40, APOE	TOMM40			10452			rs2075650-?	rs2075650	0	2075650	intron	0	0.855	3E-17	16.52287874528034		   1.41	[1.30-1.54] 	Illumina [516,721]	N
04/13/2011	21424380	Sehrawat B	03/19/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21424380	Potential novel candidate polymorphisms identified in genome-wide association study for breast cancer susceptibility.	Breast cancer	302 European ancestry female cases, 321 European ancestry female controls	1,153 European ancestry female cases, 1,215 European ancestry female controls	5p15.2	5	10467590	ROPN1L	ROPN1L			83853			rs1092913-T	rs1092913	0	1092913	intron	0	0.13	2E-6	5.698970004336018		   1.45	[1.24-1.69] 	Affymetrix [782,838]	N
04/13/2011	21424380	Sehrawat B	03/19/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21424380	Potential novel candidate polymorphisms identified in genome-wide association study for breast cancer susceptibility.	Breast cancer	302 European ancestry female cases, 321 European ancestry female controls	1,153 European ancestry female cases, 1,215 European ancestry female controls	19q13.41	19	51869723	ZNF577	ZNF577			84765			rs10411161-T	rs10411161	0	10411161	intron	0	0.13	7E-6	5.154901959985742		   1.42	[1.22-1.65] 	Affymetrix [782,838]	N
04/13/2011	21437268	McKay JD	03/17/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21437268	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Upper aerodigestive tract cancers	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q23	4	99318162	ADH1B	ADH1B			125			rs1229984-T	rs1229984	0	1229984	missense	0	0.94	1E-20	20		   1.56	[1.41-1.69] 	Illumina [294,620]	N
04/13/2011	21437268	McKay JD	03/17/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21437268	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Upper aerodigestive tract cancers	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q23	4	99420704	ADH7	ADH7			131			rs971074-G	rs971074	0	971074	cds-synon	0	NR	9E-17	16.04575749056067		   1.33	[1.25-1.43] 	Illumina [294,620]	N
04/13/2011	21437268	McKay JD	03/17/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21437268	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Upper aerodigestive tract cancers	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q23	4	99353129	ADH1C	ADH1C			126			rs1789924-C	rs1789924	0	1789924	nearGene-5	0	NR	3E-7	6.522878745280337		   1.12	[1.07-1.17] 	Illumina [294,620]	N
04/13/2011	21437268	McKay JD	03/17/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21437268	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Upper aerodigestive tract cancers	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	4q21.23	4	83453327	HEL308, ADH, FAM175A	HELQ			113510			rs1494961-C	rs1494961	0	1494961	missense	0	0.49	1E-8	8		   1.12	[1.08-1.17] 	Illumina [294,620]	N
04/13/2011	21437268	McKay JD	03/17/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21437268	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Upper aerodigestive tract cancers	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	12q24.13	12	112083644	ALDH2	NAA25			80018			rs4767364-A	rs4767364	0	4767364	intron	0	0.29	2E-8	7.698970004336018		   1.13	[1.08-1.18] 	Illumina [294,620]	N
04/12/2011	21399633	Gharavi AG	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399633	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	1q31.3	1	196717788	CFH, CFHR3, CFHR1, CFHR4, CHFR2, CFHR5	CFH			3075			rs6677604-?	rs6677604	0	6677604	intron	0	0.77 (EA)	3E-10	9.522878745280336		   1.47	[NR] 	Illumina [498,322]	N
04/12/2011	21399633	Gharavi AG	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399633	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	6	32842071	TAP2, TAP1, PSMB8, PSMB9	PSMB8			5696			rs9357155-?	rs9357155	0	9357155	intron	0	0.87 (EA)	2E-12	11.69897000433602		   1.41	[NR] 	Illumina [498,322]	N
04/12/2011	21399633	Gharavi AG	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399633	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	6	33118671	HLA-DPA1, HLA-DPB1, HLA-DPB2	TRNAI25			100189401			rs1883414-?	rs1883414	0	1883414		0	0.67 (EA)	5E-9	8.301029995663981		   1.28	[NR] 	Illumina [498,322]	N
04/12/2011	21399633	Gharavi AG	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399633	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	22q12.2	22	30098382	HORMAD2, MTMR3, LIF, OSM	HORMAD2			150280			rs2412971-?	rs2412971	0	2412971	intron	0	0.49 (EA)	2E-9	8.698970004336019		   1.25	[NR] 	Illumina [498,322]	N
04/12/2011	21399633	Gharavi AG	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399633	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	6p21.32	6	32713854	HLA-DRB1, HLA-DQA1, HLA-DQB1	TRNAI25			100189401			rs9275596-?	rs9275596	0	9275596		0	0.73 (EA)	2E-26	25.69897000433602		   1.59	[NR] 	Illumina [498,322]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	1q31.3	1	197812068	DENND1B	FAM204BP - C1orf53	100420875	388722		       64.62	       90.48	rs12134279-T	rs12134279	0	12134279	Intergenic	1	0.20	2E-14	13.69897000433602		   1.34	[1.25-1.45] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	2q32.2	2	190673836	STAT4	NAB1			4664			rs10931468-A	rs10931468	0	10931468	intron	0	0.12	2E-19	18.69897000433602		   1.50	[1.37-1.64] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	3q13.33	3	119501087	CD80	TIMMDC1			51300			rs2293370-G	rs2293370	0	2293370	intron	0	0.80	3E-11	10.52287874528034		   1.35	[1.23-1.47] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	4q24	4	102630446	NFKB1	NFKB1 - MANBA	4790	4126		       13.14	        1.04	rs7665090-C	rs7665090	0	7665090	Intergenic	1	0.52	4E-12	11.39794000867204		   1.26	[1.18-1.34] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	5p13.2	5	35942940	IL7R	CAPSL - UGT3A1	133690	133688		        4.16	       10.15	rs860413-A	rs860413	0	860413	Intergenic	1	0.72	1E-11	11		   1.30	[1.21-1.40] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	7p14.1	7	37334906	Intergenic	ELMO1			9844			rs6974491-A	rs6974491	0	6974491	intron	0	0.17	4E-8	7.397940008672037		   1.25	[1.16-1.36] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	11q23.3	11	118873063	CXCR5	SETP16 - CXCR5	649925	643		       38.50	       10.70	rs6421571-C	rs6421571	0	6421571	Intergenic	1	0.81	3E-12	11.52287874528034		   1.37	[1.25-1.50] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	12p13.31	12	6330843	TNFRSF1A	TNFRSF1A			7132			rs1800693-C	rs1800693	0	1800693	intron	0	0.40	2E-9	8.698970004336019		   1.22	[1.14-1.30] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	14q24.1	14	68286876	RAD51L1	RAD51B			5890			rs911263-T	rs911263	0	911263	intron	0	0.71	2E-11	10.69897000433602		   1.29	[1.20-1.39] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	16p13.13	16	11093926	CLEC16A	CLEC16A			23274			rs12924729-G	rs12924729	0	12924729	intron	0	0.68	3E-12	11.52287874528034		   1.29	[1.20-1.38] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	16q24.1	16	85985665	Intergenic	MIR6774 - LINC01082	102466732	100506542		       67.25	      210.52	rs11117432-G	rs11117432	0	11117432	Intergenic	1	0.76	5E-11	10.30102999566398		   1.31	[1.21-1.43] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	22q13.1	22	39274846	MAP3K7IP1	PDGFB - RPL3	5155	6122		       29.89	       38.04	rs968451-T	rs968451	0	968451	Intergenic	1	0.19	1E-9	8.999999999999998		   1.27	[1.18-1.38] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	1p31.3			IL12RB2	 - 						rs17129789-C	rs17129789					0.18	9E-20			   1.52	[1.39-1.67] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	3q25.33	3	160028076	IL12A	LINC01100;IL12A-AS1			730109;101928376			rs485499-T	rs485499	0	485499	intron;intron	0	0.57	2E-16	15.69897000433602		   1.38	[1.28-1.50] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	6p21.32	6	32689801	MHC	TRNAI25			100189401			rs7774434-C	rs7774434	0	7774434		0	0.38	4E-34	33.39794000867203		   1.60	[1.48-1.73] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	7q32.1	7	128977412	IRF5	TNPO3			23534			rs12531711-G	rs12531711	0	12531711	intron	0	0.11	9E-17	16.04575749056067		   1.58	[1.41-1.76] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	17q12	17	39387196	ORMDL3	FBXL20			84961			rs7208487-T	rs7208487	0	7208487	intron	0	0.84	8E-7	6.096910013008056		   1.32	[1.18-1.48] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	19q13.33	19	50423485	SPIB	SPIB			6689			rs3745516-A	rs3745516	0	3745516	intron	0	0.23	2E-13	12.69897000433602		   1.38	[1.32-1.44] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	3p24.3	3	16913767	PLCL2	PLCL2			23228			rs1372072-A	rs1372072	0	1372072	intron	0	0.37	2E-8	7.698970004336018		   1.20	[1.12-1.27] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	11q13.1	11	64362250	RPS6KA4	RPS6KA4			8986			rs538147-G	rs538147	0	538147	intron	0	0.61	2E-10	9.698970004336017		   1.23	[1.15-1.31] 	Illumina [507,467]	N
04/12/2011	21399635	Mells GF	03/13/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21399635	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	14q32.32	14	103096858	TNFAIP2	RPL13P6 - EXOC3L4	100129176	91828		       54.76	        2.76	rs8017161-A	rs8017161	0	8017161	Intergenic	1	0.40	3E-13	12.52287874528034		   1.22	[1.16-1.27] 	Illumina [507,467]	N
04/11/2011	21423719	Speliotes EK	03/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21423719	Genome-wide association analysis identifies variants associated with nonalcoholic fatty liver disease that have distinct effects on metabolic traits.	Nonalcoholic fatty liver disease	880 Amish individuals, 6,296 European ancestry individuals	592 European ancestry cases, 1,405 European ancestry controls	22q13.31	22	43928847	PNPLA3	PNPLA3			80339			rs738409-G	rs738409	0	738409	missense	0	0.23	4E-34	33.39794000867203		    .26	[0.22-0.30] unit increase (GOLD)	Affymetrix & Illumina [~2.4 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	8p21.3	8	19966981	LPL	LPL			4023			rs13702-A	rs13702	0	13702	UTR-3	0	NR	1E-16	16		    .29	[0.23-0.35] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	16q13	16	56954132	CETP	HERPUD1 - CETP	9709	1071		       10.25	        7.79	rs173539-C	rs173539	0	173539	Intergenic	1	NR	5E-16	15.30102999566398		    .26	[0.20-0.32] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	11q23.3	11	116768388	BUD13	BUD13			84811			rs10790162-A	rs10790162	0	10790162	intron	0	NR	3E-15	14.52287874528034		    .38	[0.28-0.48] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	11q23.3	11	116782580	ZNF259	ZPR1			8882			rs2075290-C	rs2075290	0	2075290	intron	0	NR	2E-14	13.69897000433602		    .39	[0.29-0.49] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	11q23.3	11	116789970	APOA5	ZPR1;APOA5			8882;116519			rs2266788-C	rs2266788	0	2266788	nearGene-5;UTR-3	0	NR	5E-13	12.30102999566398		    .39	[0.29-0.49] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	8q24.13	8	125472284	TRIB1	TRIB1 - LINC00861	10221	100130231		       33.88	      450.24	rs2954026-G	rs2954026	0	2954026	Intergenic	1	NR	8E-9	8.096910013008056		    .16	[0.10-0.22] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	19q13.32	19	44911194	LOC100129500	APOE - APOC1	348	341		        1.80	        3.13	rs439401-C	rs439401	0	439401	Intergenic	1	NR	1E-8	8		    .24	[0.16-0.32] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NR	8p23.1	8	9325848	LOC100129150	LOC157273			157273			rs9987289-A	rs9987289	0	9987289	intron	0	NR	1E-8	8		    .25	[0.17-0.33] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	8p21.3	8	19958727	LPL	LPL			4023			rs295-A	rs295	0	295	intron	0	NR	2E-9	8.698970004336019		    .17	[0.11-0.23] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	11q23.3	11	116789970	APOA5	ZPR1;APOA5			8882;116519			rs2266788-C	rs2266788	0	2266788	nearGene-5;UTR-3	0	NR	2E-9	8.698970004336019		    .26	[0.18-0.34] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	11q23.3	11	116782580	ZNF259	ZPR1			8882			rs2075290-C	rs2075290	0	2075290	intron	0	NR	2E-9	8.698970004336019		    .26	[0.18-0.34] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	11q23.3	11	116768388	BUD13	BUD13			84811			rs10790162-A	rs10790162	0	10790162	intron	0	NR	5E-9	8.301029995663981		    .25	[0.17-0.33] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	16q13	16	56954132	CETP	HERPUD1 - CETP	9709	1071		       10.25	        7.79	rs173539-C	rs173539	0	173539	Intergenic	1	NR	9E-9	8.045757490560675		    .16	[0.10-0.22] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q14.3	11	92940662	LOC100128354	RPS3AP42 - MTNR1B	100271597	4544		      441.70	       28.96	rs1387153-C	rs1387153	0	1387153	Intergenic	1	NR	8E-9	8.096910013008056	(BP-GLUC)	    .19	[0.13-0.25] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-G	rs3764261	0	3764261	Intergenic	1	NR	3E-13	12.52287874528034	(BP-HDLC)	    .29	[0.21-0.37] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p21.3	8	20010875	LPL	LPL - RPL30P9	4023	100270981		       43.62	      102.46	rs1441756-G	rs1441756	0	1441756	Intergenic	1	NR	3E-8	7.522878745280337	(BP-HDLC)	    .18	[0.12-0.24] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	16q13	16	56968820	CETP	CETP			1071			rs9939224-G	rs9939224	0	9939224	intron	0	0.46	7E-12	11.15490195998574	(HDLC-GLUC)	    .31	[0.21-0.41] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q14.3	11	92940662	LOC100128354	RPS3AP42 - MTNR1B	100271597	4544		      441.70	       28.96	rs1387153-C	rs1387153	0	1387153	Intergenic	1	NR	2E-9	8.698970004336019	(HDLC-GLUC)	    .21	[0.15-0.27] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	15q21.3	15	58388755	LIPC	LOC102724766			102724766			rs2043085-A	rs2043085	0	2043085	intron	0	NR	1E-8	8	(HDLC-GLUC)	    .17	[0.11-0.23] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	2q31.1	2	168926370	ABCB11	ABCB11			8647			rs569805-A	rs569805	0	569805	intron	0	NR	9E-8	7.045757490560674	(HDLC-GLUC)	    .16	[0.10-0.22] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	16q13	16	56954132	CETP	HERPUD1 - CETP	9709	1071		       10.25	        7.79	rs173539-C	rs173539	0	173539	Intergenic	1	NR	1E-16	16	(HDLC-WC)	    .29	[0.23-0.35] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p21.3	8	19959423	LPL	LPL			4023			rs301-C	rs301	0	301	intron	0	NR	3E-11	10.52287874528034	(HDLC-WC)	    .22	[0.16-0.28] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p23.1	8	9325848	LOC100129150	LOC157273			157273			rs9987289-A	rs9987289	0	9987289	intron	0	NR	4E-8	7.397940008672037	(HDLC-WC)	    .24	[0.16-0.32] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	15q21.3	15	58386313	LIPC	LOC102724766			102724766			rs10468017-C	rs10468017	0	10468017	intron	0	NR	6E-8	7.221848749616355	(HDLC-WC)	    .16	[0.10-0.22] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q14.3	11	92947847	LOC100128354	RPS3AP42 - MTNR1B	100271597	4544		      448.89	       21.78	rs10830956-C	rs10830956	0	10830956	Intergenic	1	NR	5E-11	10.30102999566398	(TG-GLUC)	    .20	[0.14-0.26] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	8p21.3	8	19968862	LPL	LPL - RPL30P9	4023	100270981		        1.60	      144.47	rs2197089-C	rs2197089	0	2197089	Intergenic	1	NR	2E-9	8.698970004336019	(TG-GLUC)	    .18	[0.12-0.24] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q23.3	11	116763146	BUD13	BUD13			84811			rs11820589-A	rs11820589	0	11820589	missense	0	NR	6E-9	8.221848749616356	(TG-GLUC)	    .32	[0.20-0.44] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q23.3	11	116781491	ZNF259	ZPR1			8882			rs12286037-C	rs12286037	0	12286037	intron	0	NR	1E-8	8	(TG-GLUC)	    .32	[0.20-0.44] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	6p12.3	6	50830813	TFAP2B	TFAP2B			7021			rs2206277-A	rs2206277	0	2206277	intron	0	NR	1E-7	7	(WC-GLUC)	    .17	[0.11-0.23] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	8p21.3	8	19967156	LPL	LPL			4023			rs15285-A	rs15285	0	15285	UTR-3	0	NR	1E-10	10		    .27	[0.19-0.35] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	2p23.3	2	27519736	GCKR	GCKR			2646			rs780093-A	rs780093	0	780093	intron	0	NR	3E-10	9.522878745280336		    .18	[0.12-0.24] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	11q23.3	11	116778419	ZNF259	ZPR1			8882			rs11823543-A	rs11823543	0	11823543	intron	0	NR	3E-9	8.522878745280337		    .35	[0.23-0.47] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	11q23.3	11	116755542	BUD13	BUD13			84811			rs11825181-A	rs11825181	0	11825181	intron	0	NR	3E-9	8.522878745280337		    .32	[0.22-0.42] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	8q24.13	8	125481504	TRIB1	TRIB1 - LINC00861	10221	100130231		       43.10	      441.02	rs2954033-A	rs2954033	0	2954033	Intergenic	1	NR	9E-9	8.045757490560675		    .17	[0.11-0.23] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	11q23.3	11	116789970	APOA5	ZPR1;APOA5			8882;116519			rs2266788-C	rs2266788	0	2266788	nearGene-5;UTR-3	0	NR	4E-8	7.397940008672037		    .37	[0.23-0.51] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	11q23.3	11	116782580	ZNF259	ZPR1			8882			rs2075290-C	rs2075290	0	2075290	intron	0	NR	1E-16	16		    .41	[0.31-0.51] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	11q23.3	11	116789970	APOA5	ZPR1;APOA5			8882;116519			rs2266788-A	rs2266788	0	2266788	nearGene-5;UTR-3	0	NR	2E-16	15.69897000433602		    .41	[0.31-0.51] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	11q23.3	11	116768388	BUD13	BUD13			84811			rs10790162-A	rs10790162	0	10790162	intron	0	NR	7E-16	15.15490195998574		    .39	[0.29-0.49] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	2	27519736	GCKR	GCKR			2646			rs780093-A	rs780093	0	780093	intron	0	NR	2E-12	11.69897000433602		    .19	[0.13-0.25] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	2	27629051	CCDC121	GPN1;CCDC121			11321;79635			rs3749147-C	rs3749147	0	3749147	missense;nearGene-5	0	NR	1E-9	8.999999999999998		    .18	[0.12-0.24] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	2	27578892	C2orf16	C2orf16			84226			rs1919128-A	rs1919128	0	1919128	missense	0	NR	2E-9	8.698970004336019		    .18	[0.12-0.24] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/11/2011	21386085	Kraja AT	03/08/2011	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/21386085	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	2	27592643	ZNF512	ZNF512			84450			rs13022873-A	rs13022873	0	13022873	intron	0	NR	5E-9	8.301029995663981		    .17	[0.11-0.23] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/08/2011	21378987	Holm H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378987	A rare variant in MYH6 is associated with high risk of sick sinus syndrome.	Sick sinus syndrome	792 European ancestry cases, 37,592 European ancestry controls	469 European ancestry cases, 1,185 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~7.2 million] (imputed)	N
04/08/2011	21386754	Marciante KD	03/06/2011	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21386754	Cerivastatin, genetic variants, and the risk of rhabdomyolysis.	Response to cerivastatin	168 European ancestry cases, 17 Other ancestry cases, 636 European ancestry controls, 96 Other ancestry controls	NA	1q43	1	237826822	RYR2	RYR2			6262			rs2819742-G	rs2819742	0	2819742	intron	0	0.62	2E-7	6.698970004336019		   2.08	[1.59-2.78] 	Illumina [292,461]	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1p32.3	1	55030366	PCSK9	BSND - PCSK9	7809	255738		       21.57	        9.11	rs11206510-T	rs11206510	0	11206510	Intergenic	1	0.82	9E-8	7.045757490560674		   1.08	[1.05-1.11] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	10q11.21	10	44280376	CXCL12	LINC00841 - CXCL12	283033	6387		      310.47	       89.78	rs1746048-C	rs1746048	0	1746048	Intergenic	1	0.87	3E-10	9.522878745280336		   1.09	[1.07-1.13] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1p32.2	1	56497149	PPAP2B	PPAP2B			8613			rs17114036-A	rs17114036	0	17114036	intron	0	0.91	4E-19	18.39794000867203		   1.17	[1.13-1.22] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6p21.31	6	35067023	ANKS1A	ANKS1A			23294			rs17609940-G	rs17609940	0	17609940	intron	0	0.75	1E-8	8		   1.07	[1.05-1.10] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6q23.2	6	133893387	TCF21	TCF21			6943			rs12190287-C	rs12190287	0	12190287	UTR-3	0	0.62	1E-12	12		   1.08	[1.06-1.10] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	7q32.2	7	130023656	ZC3HC1	ZC3HC1			51530			rs11556924-C	rs11556924	0	11556924	missense	0	0.62	9E-18	17.04575749056067		   1.09	[1.07-1.12] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-C	rs579459	0	579459	Intergenic	1	0.21	4E-14	13.39794000867204		   1.10	[1.07-1.13] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	10q24.32	10	102959339	CYP17A1, CNNM2, NT5C2	CNNM2			54805			rs12413409-G	rs12413409	0	12413409	intron	0	0.89	1E-9	8.999999999999998		   1.12	[1.08-1.16] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	11q23.3	11	116778201	ZNF259, APOA5, APOA4, APOC3, APOA1	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.13	1E-17	17		   1.13	[1.10-1.16] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	13q34	13	110308365	COL4A1, COL4A2	COL4A1;COL4A2			1282;1284			rs4773144-G	rs4773144	0	4773144	nearGene-5;intron	0	0.44	4E-9	8.397940008672036		   1.07	[1.05-1.09] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	14q32.2	14	99667605	HHIPL1	HHIPL1			84439			rs2895811-C	rs2895811	0	2895811	intron	0	0.43	1E-10	10		   1.07	[1.05-1.10] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	15q25.1	15	78796769	ADAMTS7	ADAMTS7			11173			rs3825807-A	rs3825807	0	3825807	missense	0	0.57	1E-12	12		   1.08	[1.06-1.10] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17p13.3	17	2223210	SMG6, SRR	SMG6			23293			rs216172-C	rs216172	0	216172	intron	0	0.37	1E-9	8.999999999999998		   1.07	[1.05-1.09] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17p11.2	17	17640408	RASD1, SMCR3, PEMT	EEF1A1P43 - RAI1	1918	10743		       54.26	       41.07	rs12936587-G	rs12936587	0	12936587	Intergenic	1	0.56	4E-10	9.397940008672037		   1.07	[1.05-1.09] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17q21.32	17	48911235	UBE2Z, GIP, ATP5G1, SNF8	UBE2Z			65264			rs46522-T	rs46522	0	46522	intron	0	0.53	2E-8	7.698970004336018		   1.06	[1.04-1.08] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1p13.3	1	109279544	SORT1	PSRC1			84722			rs599839-A	rs599839	0	599839	nearGene-3	0	0.78	3E-10	9.522878745280336		   1.11	[1.08-1.15] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1q41	1	222650187	MIA3	MIA3			375056			rs17465637-C	rs17465637	0	17465637	intron	0	0.74	1E-8	8		   1.14	[1.09-1.20] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	2q33.2	2	202881162	WDR12	WDR12			55759			rs6725887-C	rs6725887	0	6725887	intron	0	0.15	1E-9	8.999999999999998		   1.14	[1.09-1.19] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	3q22.3	3	138401110	MRAS	MRAS			22808			rs2306374-C	rs2306374	0	2306374	intron	0	0.18	3E-8	7.522878745280337		   1.12	[1.07-1.16] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6p24.1	6	12927312	PHACTR1	PHACTR1			221692			rs12526453-C	rs12526453	0	12526453	intron	0	0.67	1E-9	8.999999999999998		   1.10	[1.06-1.13] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	6q25.3	6	160540105	LPA	LPA			4018			rs3798220-C	rs3798220	0	3798220	missense	0	0.02	3E-11	10.52287874528034		   1.51	[1.33-1.70] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	9p21.3	9	22098575	CDKN2A, CDKN2B	CDKN2B-AS1			100048912			rs4977574-G	rs4977574	0	4977574	intron	0	0.46	1E-22	22		   1.29	[1.23-1.36] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.44	6E-6	5.221848749616356		   1.07	[1.04-1.10] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	19p13.2	19	11052925	LDLR	SMARCA4			6597			rs1122608-G	rs1122608	0	1122608	intron	0	0.77	1E-9	8.999999999999998		   1.14	[1.09-1.18] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	21q22.11	21	34226827	MRPS6	LINC00310 - KCNE2	114036	9992		       36.91	      137.20	rs9982601-T	rs9982601	0	9982601	Intergenic	1	0.15	4E-10	9.397940008672037		   1.18	[1.12-1.24] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	2q37.1	2	233133771	Intergenic	INPP5D			3635			rs10933436-A	rs10933436	0	10933436	intron	0	0.49	7E-6	5.154901959985742		   1.06	[1.04-1.09] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	3p25.1	3	15606497	Intergenic	BTD			686			rs7651039-C	rs7651039	0	7651039	intron	0	0.54	2E-6	5.698970004336018		   1.06	[1.04-1.09] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	7q31.2	7	117427768	Intergenic	ASZ1			136991			rs7808424-G	rs7808424	0	7808424	nearGene-5	0	0.12	1E-6	5.999999999999999		   1.10	[1.06-1.14] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	11q24.2	11	126412002	Intergenic	ST3GAL4			6484			rs4937126-G	rs4937126	0	4937126	intron	0	0.69	5E-6	5.301029995663981		   1.06	[1.04-1.09] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378990	Schunkert H	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378990	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17p13.3	17	2222311	Intergenic	SMG6			23293			rs1231206-A	rs1231206	0	1231206	intron	0	0.37	9E-10	9.045757490560675		   1.07	[1.05-1.09] 	Affymetrix & Illumina {~2.3 million] (imputed)	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	9p21.3	9	22098575	Intergenic	CDKN2B-AS1			100048912			rs4977574-G	rs4977574	0	4977574	intron	0	NR	2E-25	24.69897000433602		   1.20	[1.16-1.25] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	1p13.3	1	109275908	CELSR2, PSRC1, SORT1	CELSR2			1952			rs646776-T	rs646776	0	646776	nearGene-3	0	NR	6E-10	9.221848749616356		   1.14	[1.09-1.19] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	6p24.1	6	12888772	PHACTR1	PHACTR1			221692			rs1332844-T	rs1332844	0	1332844	intron	0	NR	6E-8	7.221848749616355		   1.11	[1.07-1.15] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	10q23.31	10	89243170	LIPA	LIPA			3988			rs1412444-T	rs1412444	0	1412444	intron	0	0.42	3E-13	12.52287874528034		   1.09	[1.07-1.12] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	11q22.3	11	103789839	PDGFD	MTND1P36 - MIR4693	100506721	100616457		      381.46	       60.07	rs974819-T	rs974819	0	974819	Intergenic	1	0.32	2E-9	8.698970004336019		   1.07	[1.04-1.09] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	15q25.1	15	78818751	ADAMTS7, MORF4L1	ADAMTS7 - TRNAK6	11173	100189013		        7.29	       41.81	rs4380028-C	rs4380028	0	4380028	Intergenic	1	0.65	4E-9	8.397940008672036		   1.07	[1.05-1.10] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	7q22.3	7	107604100	Intergenic	BCAP29			55973			rs10953541-C	rs10953541	0	10953541	intron	0	0.80	3E-8	7.522878745280337		   1.08	[1.05-1.11] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	10p11.23	10	30046193	KIAA1462	KIAA1462			57608			rs2505083-C	rs2505083	0	2505083	intron	0	0.38	4E-8	7.397940008672037		   1.07	[1.04-1.09] 	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	6p24.1	6	12903725	PHACTR1	PHACTR1			221692			rs9349379-?	rs9349379	0	9349379	intron	0	NR	9E-26	25.04575749056067		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	Xq23	23	110695977	Intergenic	CHRDL1			91851			rs5943057-?	rs5943057	0	5943057	intron	0	NR	9E-7	6.045757490560675		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	4q31.22	4	147126398	Intergenic	TTC29 - MIR548G	83894	100313938		      180.52	      218.23	rs1395821-?	rs1395821	0	1395821	Intergenic	1	NR	7E-7	6.154901959985743		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	15q24.1	15	74741059	Intergenic	CYP1A1 - CYP1A2	1543	1544		       15.45	        7.78	rs2472299-?	rs2472299	0	2472299	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	2q32.1	2	187331742	Intergenic	IMPDH1P7 - CALCRL	391467	10203		      328.26	       10.22	rs840616-?	rs840616	0	840616	Intergenic	1	NR	7E-7	6.154901959985743		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	17q12	17	33960430	Intergenic	ASIC2			40			rs11650066-?	rs11650066	0	11650066	intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	17q23.3	17	64330939	Intergenic	PECAM1			5175			rs6504218-?	rs6504218	0	6504218	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	2q32.1	2	187478770	Intergenic	TFPI			7035			rs7586970-?	rs7586970	0	7586970	missense	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	1p32.2	1	56500678	PPAP2B	PPAP2B			8613			rs17114046-?	rs17114046	0	17114046	intron	0	NR	2E-7	6.698970004336019		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	9q22.33	9	97977842	Intergenic	HEMGN - ANP32B	55363	10541		       32.93	        5.37	rs4743150-?	rs4743150	0	4743150	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [574,919]	N
04/11/2011	21378988	The Coronary Artery Disease (C4D) Genetics Consortium	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378988	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	10q24.32	10	102959339	Intergenic	CNNM2			54805			rs12413409-?	rs12413409	0	12413409	intron	0	NR	4E-6	5.397940008672037		NR	NR	Illumina [574,919]	N
04/07/2011	21378986	Wang F	03/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378986	Genome-wide association identifies a susceptibility locus for coronary artery disease in the Chinese Han population.	Coronary heart disease	230 Han Chinese ancestry cases, 230 Han Chinese ancestry controls	3,240 Han Chinese ancestry cases, 4,353 Han Chinese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [440,794]	N
04/07/2011	21378095	Fox ER	03/04/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21378095	Association of genetic variation with systolic and diastolic blood pressure among African Americans: the Candidate Gene Association Resource study.	Blood pressure	7,473 African American individuals	11,882 African American individuals, 69,899 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [2.5 million] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.33	6	32082981	TNXB	TNXB			7148			rs1150754-A	rs1150754	0	1150754	intron	0	0.13	6E-29	28.22184874961635	(anti-dsDNA +)	   2.21	[1.93-2.53] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	6	32638107	HLA-DR3	HLA-DQA1			3117			rs2187668-A	rs2187668	0	2187668	intron	0	0.12	6E-28	27.22184874961636	(anti-dsDNA +)	   2.23	[1.94-2.57] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	0.23	2E-20	19.69897000433602	(anti-dsDNA +)	   1.77	[1.57-1.99] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	7q32.1	7	128954129	IRF5	TNPO3			23534			rs10488631-C	rs10488631	0	10488631	nearGene-3	0	0.11	7E-18	17.15490195998574	(anti-dsDNA +)	   1.92	[1.66-2.22] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	16p11.2	16	31301932	ITGAM	ITGAM			3684			rs9888739-T	rs9888739	0	9888739	intron	0	0.13	1E-15	15	(anti-dsDNA +)	   1.80	[1.56-2.07] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	8p23.1	8	11486464	BLK	FAM167A - BLK	83648	640		       19.70	        7.55	rs2736340-T	rs2736340	0	2736340	Intergenic	1	0.23	3E-7	6.522878745280337	(anti-dsDNA +)	   1.38	[1.23-1.56] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	1q25.3	1	183207295	LAMC2	LAMC2			3918			rs525410-?	rs525410	0	525410	intron	0	0.49	6E-7	6.221848749616355	(anti-dsDNA +)	   1.33	[1.19-1.47] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	4q25	4	108801970	COL25A1	RCC2P8 - COL25A1	100129714	84570		       12.19	        8.75	rs4956211-A	rs4956211	0	4956211	Intergenic	1	0.35	1E-6	5.999999999999999	(anti-dsDNA +)	   1.33	[1.19-1.48] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	5q33.3	5	160452971	PTTG1	PTTG1 - MIR3142	9232	100422938		       24.23	       21.47	rs2431697-?	rs2431697	0	2431697	Intergenic	1	0.56	2E-6	5.698970004336018	(anti-dsDNA +)	   1.32	[1.18-1.47] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	22q11.21	22	21585386	UBE2L3	UBE2L3			7332			rs5754217-T	rs5754217	0	5754217	intron	0	0.19	2E-6	5.698970004336018	(anti-dsDNA +)	   1.38	[1.21-1.57] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	1p32.3	1	53163913	SLC1A7	SLC1A7 - CPT2P1	6512	100420556		       21.28	       22.38	rs6695567-?	rs6695567	0	6695567	Intergenic	1	0.57	4E-6	5.397940008672037	(anti-dsDNA +)	   1.32	[1.18-1.47] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	11p15.5	11	589564	KIAA1542	PHRF1			57661			rs4963128-?	rs4963128	0	4963128	intron	0	0.66	4E-6	5.397940008672037	(anti-dsDNA +)	   1.33	[1.18-1.49] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	1q31.1	1	189754493	Intergenic	RNA5SP73 - BRINP3	100873307	339479		       88.24	      343.17	rs10737562-?	rs10737562	0	10737562	Intergenic	1	0.50	7E-6	5.154901959985742	(anti-dsDNA +)	   1.30	[1.16-1.45] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	6	32757416	HLA-DQA2	HLA-DQB2			3120			rs2301271-T	rs2301271	0	2301271	intron	0	0.40	2E-12	11.69897000433602	(anti-dsDNA -)	   1.47	[1.32-1.63] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	7q32.1	7	128977412	IRF5	TNPO3			23534			rs12531711-G	rs12531711	0	12531711	intron	0	0.11	6E-9	8.221848749616356	(anti-dsDNA -)	   1.58	[1.36-1.83] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	2q31.3	2	180649002	Intergenic	CWC22 - SCHLAP1	57703	101669767		      641.71	       43.10	rs918959-?	rs918959	0	918959	Intergenic	1	0.91	2E-6	5.698970004336018	(anti-dsDNA -)	   1.72	[1.39-2.17] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	12q21.2	12	76615280	RPL7AP59	RPL7AP9 - YWHAQP7	441642	100422674		       14.75	        4.10	rs2669010-A	rs2669010	0	2669010	Intergenic	1	0.40	5E-6	5.301029995663981	(anti-dsDNA -)	   1.28	[1.16-1.42] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	11q11	11	55368743	OR4A15	OR4A15			81328			rs7927370-?	rs7927370	0	7927370	missense	0	0.94	7E-6	5.154901959985742	(anti-dsDNA -)	   1.92	[1.45-2.56] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	6	32255481	NOTCH4, C6orf10	C6orf10			10665			rs3130320-T	rs3130320	0	3130320	intron	0	0.39	3E-6	5.522878745280337	(case-only)	   1.39	[1.21-1.60] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	3q26.32	3	177377284	Intergenic	ASS1P7 - LINC00578	339845	100505566		       78.80	       64.64	rs12629106-?	rs12629106	0	12629106	Intergenic	1	0.81	4E-6	5.397940008672037	(case-only)	   1.56	[1.30-1.89] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	3q26.31	3	175243598	NAALADL2	NAALADL2			254827			rs1463525-?	rs1463525	0	1463525	intron	0	0.43	8E-6	5.096910013008055	(case-only)	   1.37	[1.19-1.59] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	0.28	8E-6	5.096910013008055	(case-only)	   1.41	[1.21-1.63] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	20p13	20	2537919	TMC2	TMC2			117532			rs6049839-T	rs6049839	0	6049839	intron	0	0.40	8E-6	5.096910013008055	(case-only)	   1.37	[1.19-1.58] 	Illumina [421,318] (imputed)	N
04/07/2011	21408207	Chung SA	03/03/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21408207	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	6p21.32	6	32696681	HLA-DQA1, HLA-DQA2	TRNAI25			100189401			rs2647012-A	rs2647012	0	2647012		0	0.44	8E-6	5.096910013008055	(case-only)	   1.38	[1.20-1.59] 	Illumina [421,318] (imputed)	N
04/07/2011	21368711	Alliey-Rodriguez N	03/02/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21368711	Genome-wide association study of personality traits in bipolar patients.	Personality dimensions	1,951 European ancestry bipolar cases	NA	5q21.3	5	105618627	Intergenic	RAB9BP1 - RNA5SP189	9366	100873451		      518.53	      304.37	rs10479334-?	rs10479334	0	10479334	Intergenic	1	0.078	2E-9	8.698970004336019	(TCI-C1)	NR	NR	Affymetrix [702,866]	N
04/07/2011	21368711	Alliey-Rodriguez N	03/02/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21368711	Genome-wide association study of personality traits in bipolar patients.	Personality dimensions	1,951 European ancestry bipolar cases	NA	10q23.33	10	94253948	PLCE1	PLCE1			51196			rs9419788-?	rs9419788	0	9419788	intron	0	0.354	4E-8	7.397940008672037	(TCI-ST1)	NR	NR	Affymetrix [702,866]	N
04/07/2011	21368711	Alliey-Rodriguez N	03/02/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21368711	Genome-wide association study of personality traits in bipolar patients.	Personality dimensions	1,951 European ancestry bipolar cases	NA	3p25.1	3	13701633	BC039529	LINC00620			285375			rs9846232-?	rs9846232	0	9846232	intron	0	NR	1E-8	8	(TCI-C3)	NR	NR	Affymetrix [702,866]	N
04/07/2011	21368711	Alliey-Rodriguez N	03/02/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21368711	Genome-wide association study of personality traits in bipolar patients.	Personality dimensions	1,951 European ancestry bipolar cases	NA	1q23.3	1	165434666	RXRG	RXRG			6258			rs285480-?	rs285480	0	285480	intron	0	NR	4E-7	6.397940008672037	(ZKPQ-sensation seeking)	NR	NR	Affymetrix [702,866]	N
04/07/2011	21368711	Alliey-Rodriguez N	03/02/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21368711	Genome-wide association study of personality traits in bipolar patients.	Personality dimensions	1,951 European ancestry bipolar cases	NA	3p26.1	3	7361959	GRM7	GRM7			2917			rs13080594-?	rs13080594	0	13080594	intron	0	NR	8E-7	6.096910013008056	(ZKPQ-neuroticism anxiety)	NR	NR	Affymetrix [702,866]	N
04/07/2011	21368711	Alliey-Rodriguez N	03/02/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21368711	Genome-wide association study of personality traits in bipolar patients.	Personality dimensions	1,951 European ancestry bipolar cases	NA	5q33.3	5	157181989	ITK	ITK			3702			rs411174-?	rs411174	0	411174	intron	0	NR	1E-6	5.999999999999999	(ZKPQ-neuroticism anxiety)	NR	NR	Affymetrix [702,866]	N
04/07/2011	21368711	Alliey-Rodriguez N	03/02/2011	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21368711	Genome-wide association study of personality traits in bipolar patients.	Personality dimensions	1,951 European ancestry bipolar cases	NA	20p12.1	20	13143086	SPTLC3	SPTLC3			55304			rs17190927-?	rs17190927	0	17190927	intron	0	NR	8E-7	6.096910013008056	(SPTLC3)	NR	NR	Affymetrix [702,866]	N
04/07/2011	21372407	Takeuchi F	03/01/2011	Circ J	http://www.ncbi.nlm.nih.gov/pubmed/21372407	Confirmation of ALDH2 as a Major locus of drinking behavior and of its variants regulating multiple metabolic phenotypes in a Japanese population.	Drinking behavior	733 Japanese ancestry cases, 729 Japanese ancestry controls	2,794 Japanese ancestry drinkers, 1,521 Japanese ancestry chance drinkers, 1,351 Japanese ancestry non-drinkers	12q24.12	12	111803962	ALDH2, BRAP	ALDH2			217			rs671-?	rs671	0	671	missense	0	0.75	4E-211	210.397940008672		   6.25	[5.56-7.14] 	Illumina [456,827]	N
04/07/2011	21372407	Takeuchi F	03/01/2011	Circ J	http://www.ncbi.nlm.nih.gov/pubmed/21372407	Confirmation of ALDH2 as a Major locus of drinking behavior and of its variants regulating multiple metabolic phenotypes in a Japanese population.	Drinking behavior	733 Japanese ancestry cases, 729 Japanese ancestry controls	2,794 Japanese ancestry drinkers, 1,521 Japanese ancestry chance drinkers, 1,351 Japanese ancestry non-drinkers	12q24.11	12	110902439	CCDC63	CCDC63			160762			rs10774610-?	rs10774610	0	10774610	intron	0	0.78	9E-120	119.0457574905607		   3.33	[3.03-3.70] 	Illumina [456,827]	N
04/30/2013	23480133	Kim Y	02/28/2011	World J Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/23480133	Association of intronic sequence variant in the gene encoding spleen tyrosine kinase with susceptibility to vascular dementia.	Vascular dementia	84 Korean ancestry cases, 200 Korean ancestry controls	113 Korean ancestry cases, 255 Korean ancestry controls	9q22.2	9	90874382	SYK	SYK			6850			rs290227-G	rs290227	0	290227	intron	0	0.40	7E-11	10.15490195998574		   2.20	[1.73-2.78] 	NR [300,640]	N
04/06/2011	21357676	Sulem P	02/28/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21357676	Sequence variants at CYP1A1-CYP1A2 and AHR associate with coffee consumption.	Coffee consumption	5,840 European ancestry individuals, 771 Sorb individuals	4,050 European ancestry individuals	15q24.1	15	74735539	CYP1A1, CYP1A2	CYP1A1 - CYP1A2	1543	1544		        9.93	       13.30	rs2472297-T	rs2472297	0	2472297	Intergenic	1	0.265	5E-14	13.30102999566398		    .31	[0.17-0.44] increase in cups per day	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/06/2011	21357676	Sulem P	02/28/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21357676	Sequence variants at CYP1A1-CYP1A2 and AHR associate with coffee consumption.	Coffee consumption	5,840 European ancestry individuals, 771 Sorb individuals	4,050 European ancestry individuals	7p21.1	7	17247645	AHR	RAD17P1 - AHR	9207	196		      381.28	       51.01	rs6968865-T	rs6968865	0	6968865	Intergenic	1	0.593	2E-11	10.69897000433602		    .26	[0.15-0.36] increase in cups per day	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/06/2011	21355061	Boger CA	02/25/2011	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/21355061	CUBN is a gene locus for albuminuria.	Urinary albumin excretion	31,580 European ancestry individuals	31,277 European ancestry individuals	10p13	10	16877053	CUBN, RSU1	CUBN			8029			rs1801239-T	rs1801239	0	1801239	missense	0	0.90	1E-11	11	(UACR)	    .08	[NR] unit decrease (CKDGen)	Affymetrix & Illumina [~2.5 million] (imputed)	N
04/06/2011	21364930	Bol SM	02/25/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21364930	Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages.	HIV-1 replication	191 European ancestry individuals	31 individuals	21q22.13	21	37368522	DYRK1A	DYRK1A			1859			rs12483205-?	rs12483205	0	12483205	intron	0	NR	5E-6	5.301029995663981		NR	NR	Illumina [494,656]	N
04/30/2013	21519539	Cho SC	02/25/2011	Psychiatry Investig	http://www.ncbi.nlm.nih.gov/pubmed/21519539	Genome-wide association scan of korean autism spectrum disorders with language delay: a preliminary study.	Autism spectrum disorders (language delay)	42 Korean ancestry male cases and their parental controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [331,095]	N
04/06/2011	21357381	Figueiredo JC	02/25/2011	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/21357381	Genotype-environment interactions in microsatellite stable/microsatellite instability-low colorectal cancer: results from a genome-wide association study.	Colorectal cancer	1,191 European ancestry cases, 999 European ancestry controls	872 European ancestry cases, 810 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [770,098]	N
04/06/2011	21390209	Hu X	02/24/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21390209	Meta-analysis for genome-wide association study identifies multiple variants at the BIN1 locus associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	1,831 European ancestry cases, 1,764 European ancestry controls	751 cases, 751 controls	2q14.3	2	127137039	BIN1	BIN1 - CYP27C1	274	339761		       29.71	       46.80	rs744373-?	rs744373	0	744373	Intergenic	1	NR	1E-10	10		   1.19	[NR] 	Affymetrix and Illumina [NR] (imputed)	N
04/06/2011	21390209	Hu X	02/24/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21390209	Meta-analysis for genome-wide association study identifies multiple variants at the BIN1 locus associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	1,831 European ancestry cases, 1,764 European ancestry controls	751 cases, 751 controls	2q14.3	2	127130409	BIN1	BIN1 - CYP27C1	274	339761		       23.08	       53.43	rs12989701-?	rs12989701	0	12989701	Intergenic	1	NR	3E-10	9.522878745280336		   1.23	[NR] 	Affymetrix and Illumina [NR] (imputed)	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	12q24.12	12	111569952	SH2B3	ATXN2			6311			rs653178-C	rs653178	0	653178	intron	0	NR	3E-19	18.52287874528033		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	8q24.21	8	128303768	Intergenic	MIR1208 - LINC01263	100302281	101927774		      153.58	      101.50	rs975730-?	rs975730	0	975730	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	18p11.21	18	12809341	PTPN2	PTPN2			5771			rs1893217-G	rs1893217	0	1893217	intron	0	NR	5E-12	11.30102999566398		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	9q33.2	9	120878222	TRAF1	PHF19			26147			rs1953126-T	rs1953126	0	1953126	intron	0	NR	4E-11	10.39794000867204		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	NR	4E-10	9.397940008672037		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	5q11.2	5	56264200	ANKRD55	RNA5SP184 - PSMC1P4	100873446	345645		      117.35	       10.88	rs1020388-?	rs1020388	0	1020388	Intergenic	1	NR	3E-7	6.522878745280337		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	11q23.3	11	118741072	DDX6	TREH - DDX6	11181	1656		       61.40	        6.69	rs10892279-?	rs10892279	0	10892279	Intergenic	1	NR	1E-12	12		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	1q24.2	1	167442147	CD247	CD247			919			rs864537-?	rs864537	0	864537	intron	0	NR	2E-11	10.69897000433602		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	22q11.21	22	21628603	UBE2L3	YDJC			150223			rs2298428-T	rs2298428	0	2298428	missense	0	NR	3E-10	9.522878745280336		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	21q22.3	21	42416077	UBASH3A	UBASH3A			53347			rs11203203-A	rs11203203	0	11203203	intron	0	NR	1E-8	8		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	7p14.1	7	37397251	ELMO1	ELMO1			9844			rs11984075-G	rs11984075	0	11984075	intron	0	NR	5E-8	7.30102999566398		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	12q13.3	12	57668884	CDK4	B4GALNT1 - RPL13AP23	2583	441641		       35.65	        5.78	rs10876993-?	rs10876993	0	10876993	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	2p14	2	65381775	SPRED2	SPRED2			200734			rs1876518-?	rs1876518	0	1876518	intron	0	NR	2E-8	7.698970004336018		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	2p23.1	2	30222160	LBH	YPEL5 - LBH	51646	81606		       61.63	        9.37	rs7579944-?	rs7579944	0	7579944	Intergenic	1	NR	1E-8	8		NR	NR	Illumina [472,854]	N
04/06/2011	21383967	Zhernakova A	02/24/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21383967	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease and Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, European ancestry 7,199 controls	1q23.1	1	159035859	IFI16	IFI16			3428			rs1772408-?	rs1772408	0	1772408	intron	0	NR	8E-7	6.096910013008056		NR	NR	Illumina [472,854]	N
04/06/2011	21353194	Cichon S	02/23/2011	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21353194	Genome-wide association study identifies genetic variation in neurocan as a susceptibility factor for bipolar disorder.	Bipolar disorder	682 European ancestry cases, 1,300 European ancestry controls	7,759 European ancestry cases, 34,062 European ancestry controls	19p13.11	19	19250926	NCAN	NCAN			1463			rs1064395-A	rs1064395	0	1064395	UTR-3	0	0.16	2E-9	8.698970004336019		   1.17	[NR] 	Illumina [511,978]	N
04/06/2011	21339755	Liu X	02/22/2011	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21339755	A non-synonymous polymorphism in galactose mutarotase (GALM) is associated with serotonin transporter binding potential in the human thalamus: results of a genome-wide association study.	5-HTT brain serotonin transporter levels	16 unmedicated bipolar disorder cases, 17 unmedicated major depressive disorder cases, 22 controls	51 European ancestry individuals	2p22.1	2	38689828	GALM	GALM			130589			rs6741892-?	rs6741892	0	6741892	missense	0	NR	5E-6	5.301029995663981	(thalamus)	NR	NR	Illumina [93,247]	N
04/05/2011	21323541	Stanescu HC	02/22/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21323541	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Nephropathy (idiopathic membranous)	556 European ancestry cases, 2,338 European ancestry controls	NA	6p21.32	6	32638107	HLA-DQA1	HLA-DQA1			3117			rs2187668-?	rs2187668	0	2187668	intron	0	0.13	8E-93	92.09691001300804		   4.32	[3.73-5.01] 	Illumina [242,824]	N
04/05/2011	21323541	Stanescu HC	02/22/2011	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/21323541	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Nephropathy (idiopathic membranous)	556 European ancestry cases, 2,338 European ancestry controls	NA	2q24.2	2	160060986	PLA2R1,LY75,ITGB6,RBMS1	PLA2R1			22925			rs4664308-?	rs4664308	0	4664308	intron	0	0.43	9E-29	28.04575749056067		   2.28	[1.96-2.64] 	Illumina [242,824]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	5q22.2	5	113387870	TSSK1	MCC			4163			rs1318772-G	rs1318772	0	1318772	intron	0	0.33	1E-6	5.999999999999999		    .91	[0.54-1.28] unit decrease	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	1q41	1	220836863	MOSC1	HLX-AS1			100873924			rs12073837-T	rs12073837	0	12073837	intron	0	0.19	2E-6	5.698970004336018		   1.39	[0.82-1.96] unit increase	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	Xp22.11	23	22142875	PHEX	PHEX			5251			rs12559632-A	rs12559632	0	12559632	intron	0	0.25	3E-6	5.522878745280337		   1.16	[0.69-1.63] unit decrease	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	4q27	4	120592060	PRDM5	SAR1AP3 - PRDM5	344988	11107		      247.20	       99.86	rs10017284-G	rs10017284	0	10017284	Intergenic	1	0.43	6E-6	5.221848749616356		    .85	[0.50-1.20] unit decrease	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	7q34	7	138726680	ATP6V0A4	ATP6V0A4			50617			rs3800569-C	rs3800569	0	3800569	intron	0	0.13	6E-6	5.221848749616356		   1.20	[0.69-1.71] unit increase	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	4q27	4	120041230	MAD2L1	PDE5A - MAD2L1	8654	4085		      412.40	       18.19	rs1845344-T	rs1845344	0	1845344	Intergenic	1	0.27	7E-6	5.154901959985742		    .97	[0.56-1.38] unit increase	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	2p24.1	2	23325743	UBXD4	RNA5SP87 - KLHL29	100873320	114818		      986.74	       59.68	rs2577720-C	rs2577720	0	2577720	Intergenic	1	0.33	8E-6	5.096910013008055		    .82	[0.47-1.17] unit decrease	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	5q22.2	5	113660957	YTHDC2	YTHDC2 - KCNN2	64848	3781		       65.67	      700.89	rs17135859-C	rs17135859	0	17135859	Intergenic	1	0.19	8E-6	5.096910013008055		    .97	[0.54-1.40] unit increase	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	2p16.1[rs10189857]; 2p16.1[rs6545816]			BCL11A	 - 						20-SNP haplotype cluster 2	rs10189857, rs6545816, rs6545817, rs1427407, rs7599488, rs1896294, rs766432, rs11886868, rs10195871, rs10172646, rs4671393, rs7584113, rs7557939, rs6706648, rs6738440, rs7565301, rs6729815, rs1896295, rs1896296, rs7606173					0.42	2E-7			   1.07	[0.68-1.46] unit increase	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	2p16.1[rs10189857]; 2p16.1[rs6545816]			BCL11A	 - 						20-SNP haplotype cluster 3	rs10189857, rs6545816, rs6545817, rs1427407, rs7599488, rs1896294, rs766432, rs11886868, rs10195871, rs10172646, rs4671393, rs7584113, rs7557939, rs6706648, rs6738440, rs7565301, rs6729815, rs1896295, rs1896296, rs7606173					0.254	2E-16			   1.98	[1.57-2.39] unit increase	Illumina [660,740]	N
04/04/2011	21326311	Bhatnagar P	02/17/2011	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21326311	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution	440 African American individuals	NA	6q13	6	71067268	B3GAT2	B3GAT2 - LYPLA1P3	135152	157713		      110.18	       97.71	rs11968814-A	rs11968814	0	11968814	Intergenic	1	0.16	9E-7	6.045757490560675		   1.17	[0.70-1.64] unit decrease	Illumina [660,740]	N
04/04/2011	21326295	Jin Y	02/17/2011	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/21326295	Genome-wide analysis identifies a quantitative trait locus in the MHC class II region associated with generalized vitiligo age of onset.	Vitiligo	1,339 European ancestry cases	677 European ancestry cases	6p21.32	6	32377506	C6orf10, BTNL2	TRNAI25			100189401			rs7758128-A	rs7758128	0	7758128		0	0.06	8E-11	10.09691001300805		NR	NR	Illumina [520,460]	N
04/04/2011	21379329	Wijsman EM	02/17/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21379329	Genome-wide association of familial late-onset Alzheimer's disease replicates BIN1 and CLU and nominates CUGBP2 in interaction with APOE.	Alzheimer's disease (late onset)	1,848 European ancestry affected individuals, 1,991 European ancestry unaffected individuals	231 Caribbean Hispanic cases, 187 Caribbean Hispanic controls, 386 European ancestry cases, 386 European ancestry controls	10p14	10	10958376	CUGBP2	CELF2			10659			rs62209-C	rs62209	0	62209	intron	0	NR	2E-7	6.698970004336019		   2.04	[1.56-2.67] (among APOE E4 homozygotes)	Illumina [565,336]	N
04/04/2011	21359210	Ricci G	02/16/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21359210	Pooled genome-wide analysis to identify novel risk loci for pediatric allergic asthma.	Asthma (childhood onset)	135 European ancestry child asthma cases, 134 European ancestry child rhinoconjunctivitis cases	35 child asthma cases, 44 child rhinoconjunctivitis cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~500,000] (pooled)	N
04/04/2011	21314694	Kendler KS	02/11/2011	Alcohol Clin Exp Res	http://www.ncbi.nlm.nih.gov/pubmed/21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Alcohol dependence	2,357 European ancestry individuals, 812 African American individuals	NA	3p25.2	3	11915124	C3orf31	MARK2P14 - SYN2	100631261	6854		        1.70	       89.24	rs6777876-G	rs6777876	0	6777876	Intergenic	1	0.09	4E-7	6.397940008672037	(AA)	NR	NR	Affymetrix [NR]	N
04/04/2011	21314694	Kendler KS	02/11/2011	Alcohol Clin Exp Res	http://www.ncbi.nlm.nih.gov/pubmed/21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Alcohol dependence	2,357 European ancestry individuals, 812 African American individuals	NA	1q44	1	247184887	ZNF124	VN1R16P - ZNF731P	100312805	729806		        3.92	        5.02	rs3738443-A	rs3738443	0	3738443	Intergenic	1	0.03	4E-6	5.397940008672037	(AA)	NR	NR	Affymetrix [NR]	N
04/04/2011	21314694	Kendler KS	02/11/2011	Alcohol Clin Exp Res	http://www.ncbi.nlm.nih.gov/pubmed/21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Alcohol dependence	2,357 European ancestry individuals, 812 African American individuals	NA	13q12.13	13	27012736	USP12	RPS21P8 - RPS20P32	100873798	100129306		       35.00	        4.69	rs12020569-C	rs12020569	1	9512491	Intergenic	1	0.10	5E-6	5.301029995663981	(AA)	NR	NR	Affymetrix [NR]	N
04/04/2011	21316860	Velders FP	02/11/2011	Psychoneuroendocrinology	http://www.ncbi.nlm.nih.gov/pubmed/21316860	Genetics of cortisol secretion and depressive symptoms: a candidate gene and genome wide association approach.	Cortisol secretion	1,711 European ancestry individuals	2,836 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [530,683]	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	13q31.2	13	88052451	Intergenic	TET1P1 - RPL29P29	441662	100271474		      159.05	      184.11	rs7323893-T	rs7323893	0	7323893	Intergenic	1	0.91	1E-7	7	(HDL-C)	    .14	[0.09-0.19] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	15q21.3	15	57617966	GCOM1	GCOM1;MYZAP			145781;100820829			rs937254-A	rs937254	0	937254	intron;intron	0	0.57	1E-6	5.999999999999999	(HDL-C)	    .08	[0.05-0.11] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	7q22.1	7	100860471	SLC12A9	SLC12A9			56996			rs7801190-C	rs7801190	0	7801190	intron	0	0.73	3E-8	7.522878745280337	(Hypertension)	   1.31	[1.19-1.44] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	5q35.3	5	180044201	RNF130	RNF130			55819			rs13161895-T	rs13161895	0	13161895	intron	0	0.08	6E-7	6.221848749616355	(LDL-C)	    .15	[0.09-0.21] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	5q31.3	5	142484039	Intergenic	SPRY4 - RPS12P10	81848	100271056		      158.98	       82.66	rs17577085-?	rs17577085	0	17577085	Intergenic	1	0.46	4E-6	5.397940008672037	(coronary heart disease)	   2.63	[1.72-3.85] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	7q36.1	7	151423862	Intergenic	WDR86-AS1 - CRYGN	100131176	155051		       10.51	        6.11	rs13232179-A	rs13232179	0	13232179	Intergenic	1	0.11	1E-6	5.999999999999999	(coronary heart disease)	   1.67	[1.36-2.06] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	13q31.1	13	84480131	Intergenic	LINC00333			100874128			rs9546711-A	rs9546711	0	9546711		0	0.42	2E-6	5.698970004336018	(coronary heart disease)	   1.66	[1.35-2.04] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	1p32.3	1	55277164	Intergenic	MIR4422 - GOT2P1	100616272	645538		       51.44	       90.30	rs12239436-A	rs12239436	0	12239436	Intergenic	1	0.14	5E-6	5.301029995663981	(HDL-C)	    .09	[0.05-0.13] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	1q25.3	1	183201813	LAMC2	LAMC2			3918			rs1028771-A	rs1028771	0	1028771	intron	0	0.97	4E-6	5.397940008672037	(HDL-C)	    .22	[0.13-0.31] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	2p21	2	46415110	Intergenic	EPAS1 - TMEM247	2034	388946		       28.41	       64.46	rs2346177-A	rs2346177	0	2346177	Intergenic	1	0.49	2E-6	5.698970004336018	(HDL-C)	    .07	[0.04-0.10] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	8p23.2	8	4306491	CSMD1	CSMD1			64478			rs4875320-A	rs4875320	0	4875320	intron	0	0.82	6E-6	5.221848749616356	(HDL-C)	    .10	[0.06-0.14] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	8p23.1	8	9327181	PPP1R3B	LOC157273			157273			rs6601299-T	rs6601299	0	6601299	intron	0	0.16	1E-8	8	(HDL-C)	    .14	[0.09-0.19] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	9q31.1	9	104832083	ABCA1	ABCA1			19			rs2515629-A	rs2515629	0	2515629	intron	0	0.78	5E-7	6.30102999566398	(HDL-C)	    .12	[0.07-0.17] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	11q23.3	11	116810292	APOA5	APOA5 - APOA4	116519	337		       17.87	       10.41	rs1263173-A	rs1263173	0	1263173	Intergenic	1	0.21	2E-7	6.698970004336019	(HDL-C)	    .09	[0.06-0.12] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	11q23.3	11	117103213	Intergenic	RPS27P19 - PAFAH1B2	100129905	5049		       67.13	       41.07	rs12269901-C	rs12269901	0	12269901	Intergenic	1	0.68	2E-6	5.698970004336018	(HDL-C)	    .07	[0.04-0.10] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	15q23	15	68443247	Intergenic	ITGA11 - CORO2B	22801	10391		       11.09	      116.03	rs1445021-A	rs1445021	0	1445021	Intergenic	1	0.94	9E-6	5.045757490560675	(HDL-C)	    .14	[0.08-0.20] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	16q13	16	57013387	CETP	NLRC5			84166			rs16965039-T	rs16965039	0	16965039	intron	0	0.94	6E-7	6.221848749616355	(HDL-C)	    .14	[0.09-0.19] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	16q22.1	16	67191598	LCAT	E2F4;EXOC3L1			1874;283849			rs3729639-T	rs3729639	0	3729639	nearGene-5;nearGene-5	0	0.44	2E-11	10.69897000433602	(HDL-C)	    .09	[0.06-0.12] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	16q22.1	16	67877614	EDC4	EDC4			23644			rs8060686-T	rs8060686	0	8060686	cds-synon	0	0.38	8E-6	5.096910013008055	(HDL-C)	    .07	[0.04-0.10] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	19p13.2	19	11223619	DOCK6	DOCK6			57572			rs4804155-C	rs4804155	0	4804155	intron	0	0.69	5E-6	5.301029995663981	(HDL-C)	    .08	[0.05-0.11] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	Xq26.3	23	136973136	Intergenic	SNORD61 - SRRM1P3	26787	100130190		       93.87	       10.14	rs1190739-T	rs1190739	0	1190739	Intergenic	1	0.27	5E-6	5.301029995663981	(HDL-C)	    .07	[0.04-0.10] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	1q32.3	1	211527316	SLC30A1	RD3 - SLC30A1	343035	7779		       34.40	       47.72	rs7526425-?	rs7526425	1	1614866	Intergenic	1	0.84	1E-6	5.999999999999999	(hypertension)	   1.16	[1.09-1.24] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	2p24.1	2	23675447	KLHL29	KLHL29			114818			rs4665630-?	rs4665630	0	4665630	intron	0	0.49	1E-7	7	(hypertension)	   1.21	[1.13-1.30] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	4q25	4	112002081	Intergenic	RPL36AP23 - CCDC34P1	729075	100288584		      449.85	       65.93	rs17589290-?	rs17589290	0	17589290	Intergenic	1	0.04	6E-6	5.221848749616356	(hypertension)	   1.43	[1.22-1.67] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	4q28.3	4	134601585	Intergenic	PES1P1 - RPS2P27	345016	440447		      272.60	      350.55	rs10026364-T	rs10026364	0	10026364	Intergenic	1	0.20	4E-6	5.397940008672037	(hypertension)	   1.28	[1.15-1.42] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	6q25.2	6	154093428	OPRM1	OPRM1			4988			rs675026-?	rs675026	0	675026	cds-synon	0	0.72	5E-6	5.301029995663981	(hypertension)	   1.20	[1.11-1.30] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	21q22.11	21	31068221	Intergenic	UBE3AP2 - TIAM1	7339	7074		        5.05	       50.20	rs1475591-T	rs1475591	0	1475591	Intergenic	1	0.42	6E-6	5.221848749616356	(hypertension)	   1.18	[1.10-1.27] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	21q22.2	21	39751374	IGSF5	IGSF5			150084			rs1735151-T	rs1735151	0	1735151	intron	0	0.58	9E-6	5.045757490560675	(hypertension)	   1.16	[1.09-1.24] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	1p13.3	1	109274968	CELSR2	CELSR2			1952			rs12740374-T	rs12740374	0	12740374	UTR-3	0	0.25	9E-29	28.04575749056067	(LDL-C)	    .18	[0.15-0.21] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	1q42.3	1	234590266	Intergenic	TARBP1 - IRF2BP2	6894	359948		      111.15	       14.00	rs744487-A	rs744487	0	744487	Intergenic	1	0.72	5E-6	5.301029995663981	(LDL-C)	    .07	[0.04-0.10] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	2p24.1	2	20901018	Intergenic	C2orf43 - APOB	60526	338		       77.89	      100.41	rs7569328-T	rs7569328	0	7569328	Intergenic	1	0.15	1E-7	7	(LDL-C)	    .10	[0.06-0.14] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	2p24.1	2	22599287	Intergenic	RNA5SP87 - KLHL29	100873320	114818		      260.28	      786.14	rs13015955-A	rs13015955	0	13015955	Intergenic	1	0.05	4E-7	6.397940008672037	(LDL-C)	    .18	[0.11-0.25] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	2p23.3	2	25664689	DTNB	DTNB			1838			rs11684202-A	rs11684202	0	11684202	intron	0	0.86	6E-6	5.221848749616356	(LDL-C)	    .09	[0.05-0.13] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	2q31.1	2	170684313	Intergenic	HMGB1P4 - LINC01124	10355	440925		       81.93	       28.13	rs2080401-A	rs2080401	0	2080401	Intergenic	1	0.62	7E-6	5.154901959985742	(LDL-C)	    .72	[0.69-0.75] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	3q26.2	3	171116770	TNIK	TNIK			23043			rs11920719-A	rs11920719	0	11920719	intron	0	0.77	4E-6	5.397940008672037	(LDL-C)	    .10	[0.06-0.14] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	11q22.3	11	103937424	PDGFD	PDGFD			80310			rs10895547-T	rs10895547	0	10895547	intron	0	0.23	3E-6	5.522878745280337	(LDL-C)	    .07	[0.04-0.10] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	15q22.31	15	64861491	PLEKHO2	PLEKHO2			80301			rs12595292-A	rs12595292	0	12595292	cds-synon	0	0.12	9E-6	5.045757490560675	(LDL-C)	    .11	[0.06-0.16] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	16p13.13	16	11547324	Intergenic	LITAF			9516			rs7203193-A	rs7203193	0	7203193	nearGene-3	0	0.22	3E-6	5.522878745280337	(LDL-C)	    .08	[0.05-0.11] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	16q22.3	16	72897186	ZFHX3	ZFHX3			463			rs16971384-A	rs16971384	0	16971384	intron	0	0.55	5E-6	5.301029995663981	(LDL-C)	    .07	[0.04-0.10] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	19p13.2	19	10727810	DNM2	DNM2			1785			rs11671653-A	rs11671653	0	11671653	intron	0	0.11	9E-7	6.045757490560675	(LDL-C)	    .11	[0.07-0.15] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	19p13.2	19	10981463	SMARCA4	SMARCA4			6597			rs11669133-A	rs11669133	0	11669133	intron	0	0.06	1E-8	8	(LDL-C)	    .17	[0.11-0.23] SD decrease	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	Xq27.3	23	147241105	Intergenic	MIR508 - MIR514B	574513	100422847		        4.08	        9.05	rs5904726-A	rs5904726	0	5904726	Intergenic	1	0.47	9E-6	5.045757490560675	(LDL-C)	    .06	[0.03-0.09] SD increase	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	10q25.2	10	112994329	TCF7L2	TCF7L2			6934			rs7901695-?	rs7901695	0	7901695	intron	0	0.45	1E-6	5.999999999999999	(T2D)	   1.19	[1.11-1.28] 	Affymetrix [~2.74 million] (imputed)	N
04/07/2011	21347282	Lettre G	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347282	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	8,090 African American individuals	8,849 African American or African-Caribbean ancestry individuals	2q24.3	2	164893880	Intergenic	LOC101929633			101929633			rs13424957-?	rs13424957	0	13424957	intron	0	0.81	3E-6	5.522878745280337	(T2D)	   1.24	[1.14-1.36] 	Affymetrix [~2.74 million] (imputed)	N
03/29/2011	21347284	Smith JG	02/10/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21347284	Genome-wide association studies of the PR interval in African Americans.	PR interval	6,247 African American individuals	2,022 African American individuals	3p22.2	3	38582762	SCN5A	SCN5A			6331			rs3922844-C	rs3922844	0	3922844	intron	0	0.41	3E-23	22.52287874528034		   5.11	[4.11-6.11] msec increase	Affymetrix [2,801,419 million] (imputed)	N
03/29/2011	21307088	Khor CC	02/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21307088	Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area.	Optic disc parameters	2,132 Indian ancestry individuals, 2,313 Malay ancestry individuals	9,326 European ancestry individuals	22q13.1	22	37523260	CARD10	CARD10 - CDC42EP1	29775	11135		        4.06	       36.52	rs9607469-A	rs9607469	0	9607469	Intergenic	1	0.14 (Rotterdam)	3E-12	11.52287874528034		    .05	[0.04-0.06] mm2 increase	Illumina [551,808]	N
03/29/2011	21307088	Khor CC	02/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21307088	Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area.	Optic disc parameters	2,132 Indian ancestry individuals, 2,313 Malay ancestry individuals	9,326 European ancestry individuals	1p22.1	1	91611540	CDC7, TGFBR3	RPL39P13 - HSP90B3P	100130802	343477		       11.04	       30.98	rs1192415-G	rs1192415	0	1192415	Intergenic	1	NR	8E-17	16.09691001300806		    .10	[NR] mm2 increase	Illumina [551,808]	N
03/29/2011	21307088	Khor CC	02/09/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21307088	Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area.	Optic disc parameters	2,132 Indian ancestry individuals, 2,313 Malay ancestry individuals	9,326 European ancestry individuals	10q21.3	10	68232096	ATOH7	ATOH7			220202			rs7916697-A	rs7916697	0	7916697	UTR-5	0	NR	2E-15	14.69897000433602		    .09	[NR] mm2 decrease	Illumina [551,808]	N
03/25/2011	21305692	Belmonte Mahon P	02/08/2011	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21305692	Genome-wide association analysis of age at onset and psychotic symptoms in bipolar disorder.	Bipolar disorder (age of onset and psychomotor symptoms)	2,836 European ancestry cases, 2,744 European ancestry controls	3,916 European cases, 5,112 controls	15q21.3	15	57470595	CGNL1	CGNL1			84952			rs2934442-?	rs2934442	0	2934442	intron	0	NR	1E-6	5.999999999999999	(age of onset)	   1.02	[NR] unit decrease	Affymetrix & Illumina [2,373,895] (imputed)	N
03/25/2011	21305692	Belmonte Mahon P	02/08/2011	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21305692	Genome-wide association analysis of age at onset and psychotic symptoms in bipolar disorder.	Bipolar disorder (age of onset and psychomotor symptoms)	2,836 European ancestry cases, 2,744 European ancestry controls	3,916 European cases, 5,112 controls	7q36.1	7	151849504	PRKAG2	PRKAG2			51422			rs7795096-?	rs7795096	0	7795096	intron	0	NR	2E-6	5.698970004336018	(psychomotor symptoms)	   1.20	[NR] 	Affymetrix & Illumina [2,373,895] (imputed)	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	1p32.1	1	58696476	MYSM1	MYSM1			114803			rs2811893-T	rs2811893	0	2811893	intron	0	NR	3E-7	6.522878745280337		NR	NR	Illumina [~550,000]	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	4q32.2	4	161329780	Intergenic	RPS14P7 - FSTL5	100271065	56884		      510.93	       54.11	rs4470583-A	rs4470583	0	4470583	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Illumina [~550,000]	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	5q15	5	94221997	Intergenic	KIAA0825			285600			rs17376456-A	rs17376456	0	17376456	intron	0	NR	3E-15	14.52287874528034		NR	NR	Illumina [~550,000]	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	10p12.31	10	20253705	PLXDC2	PLXDC2			84898			rs1571942-C	rs1571942	0	1571942	intron	0	NR	3E-7	6.522878745280337		NR	NR	Illumina [~550,000]	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	10p12.31	10	20304158	Intergenic	PLXDC2 - AMD1P1	84898	100133024		       14.30	       45.89	rs12219125-T	rs12219125	0	12219125	Intergenic	1	NR	9E-9	8.045757490560675		NR	NR	Illumina [~550,000]	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	10q11.22	10	48491914	ARHGAP22	ARHGAP22			58504			rs4838605-C	rs4838605	0	4838605	intron	0	NR	2E-9	8.698970004336019		NR	NR	Illumina [~550,000]	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	10q21.1	10	57429418	Intergenic	MIR3924 - MRPS35P3	100500834	359779		      124.86	      553.06	rs4462262-C	rs4462262	0	4462262	Intergenic	1	NR	9E-8	7.045757490560674		NR	NR	Illumina [~550,000]	N
03/23/2011	21310492	Huang YC	02/08/2011	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21310492	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy 	174 Han Chinese ancestry Type 2 diabetics with diabetic retinopathy, 575 Han Chinese ancestry Type 2 diabetics without diabetic retinopathy, 100 Han Chinese ancestry controls	NA	13q32.1	13	96299179	HS6ST3	HS6ST3			266722			rs2038823-C	rs2038823	0	2038823	intron	0	NR	5E-11	10.30102999566398		NR	NR	Illumina [~550,000]	N
04/25/2013	21497773	Ziliak D	02/08/2011	Transl Res	http://www.ncbi.nlm.nih.gov/pubmed/21497773	Germline polymorphisms discovered via a cell-based, genome-wide approach predict platinum response in head and neck cancers.	Response to platinum-based chemotherapy in head and neck cancers	90 European ancestry Lymphoblastoid cell lines	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	NR [~2 million]	N
04/24/2013	21497773	Ziliak D	02/08/2011	Transl Res	http://www.ncbi.nlm.nih.gov/pubmed/21497773	Germline polymorphisms discovered via a cell-based, genome-wide approach predict platinum response in head and neck cancers.	Response to platinum-based chemotherapy in head and neck cancers	90 East Asian ancestry lymphoblastoid cell lines	90 European ancestry lymphoblastoid cell lines, 59 Yoruban ancestry lymphoblastoid cell lines	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	NR [~2 million]	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	18p11.21	18	12821594	PTPN2	PTPN2			5771			rs2847281-A	rs2847281	0	2847281	intron	0	NR	2E-8	7.698970004336018		    .03	[0.02-0.04] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	6q22.1	6	116792862	GPRC6A	GPRC6A			222545			rs6901250-A	rs6901250	0	6901250	cds-synon	0	NR	5E-8	7.30102999566398		    .04	[0.03-0.05] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	5q31.1	5	132503926	IRF1	IRF1 - IL5	3659	3567		       13.15	       37.52	rs4705952-G	rs4705952	0	4705952	Intergenic	1	NR	1E-8	8		    .04	[0.03-0.05] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	1q23.2	1	159709026	CRP	CRPP1 - CRP	171422	1401		        3.43	        3.26	rs2794520-C	rs2794520	0	2794520	Intergenic	1	NR	2E-186	185.698970004336		    .16	[0.15-0.17] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	19q13.32	19	44919689	APOC1	APOC1			341			rs4420638-A	rs4420638	0	4420638	nearGene-3	0	NR	9E-139	138.0457574905606		    .24	[0.22-0.26] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	12q24.31	12	120983004	HNF1A	HNF1A			6927			rs1183910-G	rs1183910	0	1183910	intron	0	NR	2E-124	123.698970004336		    .15	[0.14-0.16] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	1p31.3	1	65695778	LEPR	LEPR - PDE4B	3953	5142		       58.29	       96.73	rs4420065-C	rs4420065	0	4420065	Intergenic	1	NR	4E-62	61.39794000867203		    .09	[0.08-0.10] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	1q21.3	1	154453788	IL6R	IL6R			3570			rs4129267-C	rs4129267	0	4129267	intron	0	NR	2E-48	47.69897000433601		    .08	[0.07-0.09] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	NR	5E-40	39.30102999566397		    .07	[0.06-0.08] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	1q44	1	247438293	NLRP3	NLRP3			114548			rs12239046-C	rs12239046	0	12239046	intron	0	NR	1E-15	15		    .05	[0.04-0.06] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	2q13	2	113083453	IL1F10	IL1F10 - IL1RN	84639	3557		        7.60	       34.44	rs6734238-G	rs6734238	0	6734238	Intergenic	1	NR	2E-17	16.69897000433602		    .05	[0.04-0.06] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	8p23.1	8	9325848	PPP1R3B	LOC157273			157273			rs9987289-A	rs9987289	0	9987289	intron	0	NR	3E-13	12.52287874528034		    .07	[0.05-0.09] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	12q23.2	12	103089316	ASCL1	ASCL1 - C12orf42	429	374470		      128.80	      148.28	rs10745954-A	rs10745954	0	10745954	Intergenic	1	NR	2E-11	10.69897000433602		    .04	[0.03-0.05] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	20q13.12	20	44413724	HNF4A	HNF4A			3172			rs1800961-C	rs1800961	0	1800961	missense	0	NR	2E-9	8.698970004336019		    .09	[0.06-0.12] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	15q22.2	15	60602766	RORA	RORA			6095			rs340029-T	rs340029	0	340029	intron	0	NR	4E-9	8.397940008672036		    .03	[0.02-0.04] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	16q12.1	16	51124799	SALL1	SOD1P2 - SALL1	100652974	6299		       16.78	       11.18	rs10521222-C	rs10521222	0	10521222	Intergenic	1	NR	9E-13	12.04575749056067		    .10	[0.07-0.13] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	1p34.3	1	39599289	PABPC4	SNORA55 - HEYL	677834	26508		       31.78	       24.14	rs12037222-A	rs12037222	0	12037222	Intergenic	1	NR	6E-11	10.22184874961635		    .05	[0.03-0.06] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	7q11.23	7	73556901	BCL7B	BCL7B			9275			rs13233571-C	rs13233571	0	13233571	intron	0	NR	4E-9	8.397940008672036		    .05	[0.03-0.07] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	21q22.2	21	39093608	PSMG1	RPSAP64 - RPL23AP12	100873797	391282		      198.41	       33.95	rs2836878-G	rs2836878	0	2836878	Intergenic	1	NR	2E-7	6.698970004336019		    .03	[0.02-0.04] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/28/2011	21300955	Dehghan A	02/07/2011	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21300955	Meta-analysis of genome-wide association studies in &gt;80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein	66,185 European ancestry individuals	16,540 European ancestry individuals	14q24.2	14	72552528	RGS6	RGS6			9628			rs4903031-G	rs4903031	0	4903031	intron	0	NR	5E-6	5.301029995663981		    .03	[0.02-0.04] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.13	1	19845367	Intergenic	RNF186 - OTUD3	54546	23252		       30.09	       36.50	rs6426833-A	rs6426833	0	6426833	Intergenic	1	0.54	4E-35	34.39794000867204		   1.30	[1.25-1.35] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-G	rs11209026	0	11209026	missense	0	0.94	5E-28	27.30102999566398		   1.74	[1.57-1.92] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1q23.3	1	161509955	FCGR2A, FCGR2B, HSPA6	FCGR2A			2212			rs1801274-A	rs1801274	0	1801274	missense	0	0.51	2E-20	19.69897000433602		   1.21	[1.16-1.26] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1q32.1	1	206766559	IL10, IL19	RPS14P1 - IL10	100271063	3586		       70.26	        1.04	rs3024505-A	rs3024505	0	3024505	Intergenic	1	0.16	6E-17	16.22184874961636		   1.25	[1.19-1.32] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2p16.1	2	60977721	PUS10	PUS10			150962			rs7608910-G	rs7608910	0	7608910	intron	0	0.39	2E-14	13.69897000433602		   1.19	[1.14-1.24] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2q37.3	2	240639691	GPR35	GPR35 - AQP12B	2859	653437		        8.43	       36.73	rs4676406-T	rs4676406	0	4676406	Intergenic	1	0.52	8E-11	10.09691001300805		   1.14	[1.09-1.18] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	3p21.31	3	49682296	MST1, UBA7, APEH, AMIGO3, GMPPB, BSN	APEH			327			rs9822268-A	rs9822268	0	9822268	intron	0	0.30	2E-17	16.69897000433602		   1.21	[1.16-1.26] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	4q27	4	122408207	IL21, IL2, ADAD1	ADAD1			132612			rs17388568-A	rs17388568	0	17388568	intron	0	0.27	9E-7	6.045757490560675		   1.12	[1.07-1.17] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p15.33	5	593968	EXOC3	MIR4456 - CEP72	100616381	55722		       58.09	       18.32	rs11739663-T	rs11739663	0	11739663	Intergenic	1	0.77	3E-8	7.522878745280337		   1.15	[1.09-1.21] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.32	6	32461866	HLA-DRB5, HLA-DQA1, HLA-DRB1, HLA-DRA, BTNL2	TRNAI25			100189401			rs9268853-T	rs9268853	0	9268853		0	0.66	1E-55	54.99999999999999		   1.40	[1.34-1.47] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	7q31.1	7	107852344	Intergenic	PIGCP2 - DLD	100128307	1738		       42.75	       38.80	rs4510766-A	rs4510766	0	4510766	Intergenic	1	0.56	2E-16	15.69897000433602		   1.20	[1.15-1.26] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	10q24.2	10	99530544	Intergenic	LOC101927324			101927324			rs6584283-T	rs6584283	0	6584283	intron	0	0.47	8E-21	20.09691001300805		   1.21	[1.16-1.26] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	12q15	12	68106295	IFNG, IL26	HNRNPA1P70 - IFNG	341333	3458		       69.52	       48.48	rs7134599-A	rs7134599	0	7134599	Intergenic	1	0.39	1E-16	16		   1.19	[1.19-1.24] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	16q22.1	16	68640885	ZFP90	ZFP90 - CDH3	146198	1001		       64.81	        3.36	rs6499188-A	rs6499188	0	6499188	Intergenic	1	0.75	4E-8	7.397940008672037		   1.14	[1.09-1.20] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	17q12	17	39884510	IKZF3, ORMDL3, IKZF3, PNMT, ZPBP2, GSDML	ZPBP2 - GSDMB	124626	55876		        6.61	       20.09	rs2872507-A	rs2872507	0	2872507	Intergenic	1	0.46	5E-11	10.30102999566398		   1.15	[1.10-1.19] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	20q13.12	20	44436388	SERINC3	MIR3646 - C20orf62	100500813	140834		       28.19	       25.38	rs6017342-C	rs6017342	0	6017342	Intergenic	1	0.54	1E-20	20		   1.20	[1.15-1.26] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	21q22.2	21	39093608	Intergenic	RPSAP64 - RPL23AP12	100873797	391282		      198.41	       33.95	rs2836878-G	rs2836878	0	2836878	Intergenic	1	0.74	2E-22	21.69897000433602		   1.25	[1.20-1.32] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	22q13.33	22	49997051	PIM3, IL17REL	IL17REL			400935			rs5771069-G	rs5771069	0	5771069	missense	0	0.51	2E-7	6.698970004336019		   1.11	[1.07-1.16] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.32	1	2581777	TNFRSF14, MMEL1, PLCH2, C1orf93	LOC100996583			100996583			rs734999-C	rs734999	0	734999	intron	0	0.52	3E-9	8.522878745280337		   1.05	[1.01-1.09] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.23	1	7961913	TNFRSF9, ERFFI1, UTS2, PARK7	PARK7			11315			rs35675666-G	rs35675666	0	35675666	intron	0	0.83	5E-9	8.301029995663981		   1.08	[1.02-1.15] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.12	1	22371954	Intergenic	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-A	rs7524102	0	7524102	Intergenic	1	0.83	2E-13	12.69897000433602		   1.10	[1.05-1.16] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2q11.2	2	102047167	IL1R2	IL1R2 - IL1R1	7850	3554		       18.74	       23.21	rs2310173-T	rs2310173	0	2310173	Intergenic	1	0.46	3E-12	11.52287874528034		   1.09	[1.05-1.14] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2q35	2	218145423	IL8RA, SLC11A1, IL8RB, AAMP, ARPC	CXCR2 - CXCR1	3579	3577		        8.17	       17.42	rs11676348-T	rs11676348	0	11676348	Intergenic	1	0.49	1E-10	10		   1.07	[1.03-1.11] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p15.2	5	10752203	DAP	DAP			1611			rs267939-C	rs267939	0	267939	intron	0	0.37	6E-12	11.22184874961635		   1.10	[1.06-1.15] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p13.2	5	35876172	IL7R	IL7R			3575			rs3194051-G	rs3194051	0	3194051	missense	0	0.27	4E-8	7.397940008672037		   1.07	[1.02-1.12] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5p13.1	5	40410833	PTGER4	LINC00603 - PTGER4	102467077	5734		      357.51	      269.10	rs6451493-T	rs6451493	0	6451493	Intergenic	1	0.61	3E-9	8.522878745280337		   1.08	[1.04-1.12] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5q31.1	5	135107916	Intergenic	C5orf66			100996485			rs254560-A	rs254560	0	254560	intron	0	0.40	1E-9	8.999999999999998		   1.07	[1.03-1.12] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	5q33.3	5	159399784	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		       81.62	      516.95	rs6871626-A	rs6871626	0	6871626	Intergenic	1	0.33	1E-21	21		   1.17	[1.12-1.22] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6p21.1	6	43828231	Intergenic	TRNAI25			100189401			rs943072-G	rs943072	0	943072		0	0.09	2E-10	9.698970004336017		   1.15	[1.08-1.23] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6q21	6	106074152	PDRM1	RPL35P3 - PRDM1	728010	639		      771.29	       12.17	rs6911490-T	rs6911490	0	6911490	Intergenic	1	0.21	1E-8	8		   1.08	[1.03-1.13] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	6q23.3	6	137685367	Intergenic	BTF3L4P3 - TNFAIP3	391040	7128		      140.92	      181.82	rs6920220-A	rs6920220	0	6920220	Intergenic	1	0.21	8E-17	16.09691001300806		   1.14	[1.09-1.20] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	7p22.3	7	2750246	GNA12	GNA12			2768			rs798502-A	rs798502	0	798502	intron	0	0.71	3E-15	14.52287874528034		   1.13	[1.08-1.18] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	7q32.1	7	128933913	IRF5, TNPO3	KCP - IRF5	375616	3663		       23.19	        4.03	rs4728142-A	rs4728142	0	4728142	Intergenic	1	0.44	2E-8	7.698970004336018		   1.07	[1.03-1.11] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	9p24.1	9	4981602	JAK2	HNRNPA1P41 - JAK2	100128701	3717		       35.64	        3.64	rs10758669-C	rs10758669	0	10758669	Intergenic	1	0.35	2E-25	24.69897000433602		   1.17	[1.12-1.21] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	9q32	9	114790969	TNFSF8, TNFSF15	TNFSF15			9966			rs4246905-C	rs4246905	0	4246905	intron	0	0.71	6E-12	11.22184874961635		   1.10	[1.05-1.15] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	9q34.3	9	136371953	CARD9, INPP5E, SDCCAG3, SEC16A, SNAPC4	CARD9			64170			rs10781499-A	rs10781499	0	10781499	cds-synon	0	0.41	3E-19	18.52287874528033		   1.12	[1.08-1.17] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	10p11.21	10	35265126	CCNY	CCNY			219771			rs12261843-G	rs12261843	0	12261843	intron	0	0.29	7E-10	9.154901959985741		   1.07	[1.03-1.12] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	11p15.5	11	1852842	LSP1	LSP1			4046			rs907611-A	rs907611	0	907611	nearGene-5	0	0.32	1E-10	10		   1.08	[1.03-1.13] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	11q13.5	11	76588150	Intergenic	C11orf30 - LRRC32	56946	2615		       35.25	       69.37	rs2155219-T	rs2155219	0	2155219	Intergenic	1	0.5	5E-16	15.30102999566398		   1.13	[1.08-1.17] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	11q23.2	11	114561234	Intergenic	NXPE1			120400			rs678170-A	rs678170	0	678170	nearGene-5	0	0.66	5E-14	13.30102999566398		   1.09	[1.05-1.14] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	13q12.13	13	26957130	Intergenic	FGFR1OP2P1 - RPS21P8	100873883	100873798		       51.35	       20.42	rs17085007-C	rs17085007	0	17085007	Intergenic	1	0.18	1E-16	16		   1.16	[1.10-1.21] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	13q14.11	13	40439840	Intergenic	LINC00598			646982			rs941823-C	rs941823	0	941823	intron	0	0.76	4E-12	11.39794000867204		   1.12	[1.07-1.17] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	16q24.1	16	85980635	Intergenic	MIR6774 - LINC01082	102466732	100506542		       62.22	      215.55	rs16940202-C	rs16940202	0	16940202	Intergenic	1	0.18	6E-19	18.22184874961635		   1.15	[1.10-1.21] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	20q13.33	20	63696229	SLC2A4RG, STMN3, ZBTB46, ZGPAT, RTEL1, TNFRSF6B	TNFRSF6B;RTEL1;RTEL1-TNFRSF6B			8771;51750;100533107			rs2297441-A	rs2297441	0	2297441	nearGene-5;UTR-3;intron	0	0.77	2E-10	9.698970004336017		   1.09	[1.04-1.15] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	21q21.1	21	15444732	Intergenic	NRIP1 - CYCSP42	8204	343727		      379.80	       45.79	rs1297265-A	rs1297265	0	1297265	Intergenic	1	0.56	7E-13	12.15490195998574		   1.11	[1.06-1.15] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	21q22.3	21	44195140	ICOSLG	C21orf33			8209			rs2838519-G	rs2838519	0	2838519	intron	0	0.39	6E-11	10.22184874961635		   1.14	[1.05-1.22] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/29/2011	21297633	Anderson CA	02/06/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21297633	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1q32.1	1	200908434	C1orf106	C1orf106			55765			rs7554511-C	rs7554511	0	7554511	intron	0	0.72	2E-13	12.69897000433602		   1.19	[1.14-1.25] 	Affymetrix & Illumina [~1.1 million] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	4p16.1	4	9993558	SLC2A9	SLC2A9			56606			rs3775948-G	rs3775948	0	3775948	intron	0	0.34	1E-9	8.999999999999998		    .18	[0.12-0.24] unit decrease	Affymetrix [2,366,856] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	6p25.1	6	4512745	AL162718.1	ECI2 - PSMC1P11	10455	442153		      377.15	      189.70	rs6942328-C	rs6942328	0	6942328	Intergenic	1	0.02	1E-6	5.999999999999999		    .55	[0.33-0.77] unit increase	Affymetrix [2,366,856] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	6q25.3	6	157119916	ARID1B	ARID1B			57492			rs9478751-A	rs9478751	0	9478751	intron	0	0.30	3E-6	5.522878745280337		    .15	[0.08-0.20] unit increase	Affymetrix [2,366,856] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	22q12.1	22	25998758	MYO18B	MYO18B			84700			rs8139900-A	rs8139900	0	8139900	intron	0	0.21	4E-6	5.397940008672037		    .17	[0.10-0.24] unit increase	Affymetrix [2,366,856] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	5p14.1	5	25087616	AC106810.1	CDH10 - MSNP1	1008	4479		      442.64	      821.69	rs2047267-G	rs2047267	0	2047267	Intergenic	1	0.17	4E-6	5.397940008672037		    .17	[0.10-0.24] unit increase	Affymetrix [2,366,856] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	3q26.32	3	178075319	AC007953.1	FGFR3P4 - LINC01014	100420833	100874330		      374.25	      343.88	rs1982821-T	rs1982821	0	1982821	Intergenic	1	0.17	4E-6	5.397940008672037		    .17	[0.10-0.24] unit decrease	Affymetrix [2,366,856] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	10q11.23	10	49016721	RP11-523018.1	VSTM4			196740			rs2244967-T	rs2244967	0	2244967	ncRNA	0	0.46	5E-6	5.301029995663981		    .13	[0.08-0.18] unit decrease	Affymetrix [2,366,856] (imputed)	N
03/21/2011	21294900	Charles BA	02/04/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21294900	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	4p16.1	4	10103046	WDR1	WDR1			9948			rs717615-G	rs717615	0	717615	intron	0	0.35	5E-6	5.301029995663981		    .13	[0.08-0.18] unit decrease	Affymetrix [2,366,856] (imputed)	N
03/18/2011	21326860	Tsai FJ	02/04/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21326860	Identification of novel susceptibility Loci for kawasaki disease in a Han chinese population by a genome-wide association study.	Kawasaki disease	250 Han Chinese ancestry cases, 446 Han Chinese ancestry controls	208 Han Chinese ancestry cases, 366 Han Chinese ancestry controls	14q32.33	14	106767970	IGHV	IGH			3492			rs10129255-A	rs10129255	0	10129255		0	0.34	7E-6	5.154901959985742		   1.32	[1.116-1.551] 	Affymetrix [723,638]	N
03/18/2011	21326860	Tsai FJ	02/04/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21326860	Identification of novel susceptibility Loci for kawasaki disease in a Han chinese population by a genome-wide association study.	Kawasaki disease	250 Han Chinese ancestry cases, 446 Han Chinese ancestry controls	208 Han Chinese ancestry cases, 366 Han Chinese ancestry controls	15q25.2	15	83057427	BTBD1	BTBD1			53339			rs1568657-G	rs1568657	0	1568657	intron	0	0.52	7E-6	5.154901959985742		   1.41	[1.191-1.667] 	Affymetrix [723,638]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	6p21.33	6	31359924	NR	TRNAI25			100189401			rs9378249-?	rs9378249	0	9378249		0	NR	1E-8	8	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	17q22	17	57788926	NR	CCDC182 - MRPS23	101927581	51649		       43.60	       50.00	rs12938916-?	rs12938916	0	12938916	Intergenic	1	NR	5E-7	6.30102999566398	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	16p12.2	16	23622705	NR	PALB2			79728			rs420259-?	rs420259	0	420259	intron	0	NR	9E-9	8.045757490560675	(recessive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	20p13	20	3795528	NR	CDC25B			994			rs3761218-?	rs3761218	0	3761218	intron	0	NR	1E-6	5.999999999999999	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	1p32.1	1	60593587	NR	PGBD4P8 - NFIA	100421185	4774		      495.61	      483.69	rs2989476-?	rs2989476	0	2989476	Intergenic	1	NR	2E-6	5.698970004336018	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	2p25.1	2	11897366	NR	MIR4262 - ST13P1	100422996	729992		       60.38	      126.19	rs4027132-?	rs4027132	0	4027132	Intergenic	1	NR	3E-6	5.522878745280337	(recessive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	2q12.1	2	104366809	NR	TMEM182 - AHCYP3	130827	402093		     1522.97	       28.19	rs7570682-?	rs7570682	0	7570682	Intergenic	1	NR	3E-6	5.522878745280337	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	2q14.1	2	115483610	NR	DPP10			57628			rs1375144-?	rs1375144	0	1375144	intron	0	NR	2E-6	5.698970004336018	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	2q37.3	2	240582850	NR	CAPN10-AS1			101752400			rs2953174-?	rs2953174	1	1133353	ncRNA	0	NR	6E-6	5.221848749616356	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	3p22.3	3	32306332	NR	CMTM8			152189			rs4627791-?	rs4627791	0	4627791	intron	0	NR	2E-6	5.698970004336018	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	3q27.1	3	183152648	NR	LAMP3			27074			rs514636-?	rs514636	0	514636	intron	0	NR	7E-7	6.154901959985743	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	4q34.3	4	179766847	NR	RNA5SP173 - LINC00290	100873437	728081		     1360.02	     1297.24	rs6844851-?	rs6844851	0	6844851	Intergenic	1	NR	9E-7	6.045757490560675	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	7p15.3	7	22945391	NR	FAM126A			84668			rs2286492-?	rs2286492	0	2286492	UTR-3	0	NR	8E-6	5.096910013008055	(recessive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	8p12	8	34379474	NR	RPL10AP3 - RPL21P80	137107	100133273		       55.80	      494.65	rs2609653-?	rs2609653	0	2609653	Intergenic	1	NR	7E-6	5.154901959985742	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	8p11.23	8	37084024	NR	RPL26P25 - SMARCE1P4	100270966	642879		       95.53	       11.07	rs4739466-?	rs4739466	0	4739466	Intergenic	1	NR	4E-6	5.397940008672037	(recessive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	9q21.31	9	79695983	NR	TLE4			7091			rs914715-?	rs914715	0	914715	intron	0	NR	1E-6	5.999999999999999	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	9q32	9	114498554	NR	DFNB31			25861			rs10982256-?	rs10982256	0	10982256	intron	0	NR	9E-6	5.045757490560675	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	10q22.1	10	70703238	NR	ADAMTS14			140766			rs17600642-?	rs17600642	0	17600642	intron	0	NR	5E-6	5.301029995663981	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	11p14.1	11	27987916	NR	HSP90AA2 - KIF18A	3324	81930		       96.82	       32.70	rs1568889-?	rs1568889	0	1568889	Intergenic	1	NR	2E-6	5.698970004336018	(recessive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	14q23.1	14	57652478	NR	SLC35F4			341880			rs10134944-?	rs10134944	0	10134944	intron	0	NR	1E-6	5.999999999999999	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	14q31.3	14	88093648	NR	LINC01146 - KCNK10	283587	54207		        6.30	       86.46	rs6574988-?	rs6574988	0	6574988	Intergenic	1	NR	4E-6	5.397940008672037	(dominant)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	14q32.33	14	104042739	NR	TDRD9			122402			rs11622475-?	rs11622475	0	11622475	intron	0	NR	2E-6	5.698970004336018	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	16q12.2	16	52878387	RPGRIP1L	CASC16 - CHD9	643714	80205		      271.41	      176.61	rs1344484-?	rs1344484	0	1344484	Intergenic	1	NR	2E-6	5.698970004336018	(addtive)	NR	NR	Affymetrix [NR]	N
01/24/2012	21254220	Jiang Y	02/01/2011	Genet Epidemiol	http://www.ncbi.nlm.nih.gov/pubmed/21254220	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases and 2,938 European ancestry controls	NA	19p13.2	19	12580371	NR	ZNF490			57474			rs7247513-?	rs7247513	0	7247513	UTR-3	0	NR	2E-6	5.698970004336018	(addtive)	NR	NR	Affymetrix [NR]	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	1q22	1	156060246	SYT11	RAB25			57111			rs34372695-T	rs34372695	0	34372695	nearGene-5	0	0.03	4E-12	11.39794000867204		   1.47	[1.35-1.59] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	2q21.3	2	134834811	ACMSD	TMEM163 - ACMSD	81615	130013		      115.81	        3.62	rs6710823-G	rs6710823	0	6710823	Intergenic	1	0.46	7E-9	8.154901959985743		   1.10	[1.06-1.14] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	2q24.3	2	168260515	STK39	PHF5GP - CERS6	450234	253782		       28.29	      195.73	rs2102808-C	rs2102808	0	2102808	Intergenic	1	0.12	4E-10	9.397940008672037		   1.18	[1.12-1.24] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	3q27.1	3	183103487	MCCC1, LAMP3	MCCC1 - LAMP3	56922	27074		        3.90	       18.73	rs11711441-G	rs11711441	0	11711441	Intergenic	1	0.86	8E-12	11.09691001300806		   1.19	[1.13-1.25] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	4p16.3	4	945299	GAK	TMEM175			84286			rs6599388-T	rs6599388	0	6599388	intron	0	0.31	4E-12	11.39794000867204		   1.16	[1.12-1.20] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	4p15.32	4	15735478	BST1	BST1			683			rs11724635-A	rs11724635	0	11724635	intron	0	0.56	1E-16	16		   1.15	[1.11-1.19] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	4q22.1	4	89716450	SNCA	GPRIN3 - SNCA	285513	6622		      408.44	        7.65	rs356219-G	rs356219	0	356219	Intergenic	1	0.39	2E-47	46.69897000433602		   1.29	[1.25-1.33] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	NR			HLA-DRB5	 - 						NR-A	NR					0.76	2E-14			   1.28	[1.22-1.34] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	12q12	12	40227006	LRRK2	LRRK2			120892			rs1491942-G	rs1491942	0	1491942	intron	0	0.08	6E-14	13.22184874961636		   1.27	[1.21-1.33] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	12q24.31	12	122811747	CCDC62, HIP1R	CCDC62			84660			rs12817488-T	rs12817488	0	12817488	intron	0	0.41	3E-13	12.52287874528034		   1.14	[1.10-1.18] 	Illumina [7,689,524] (imputed)	N
03/18/2011	21292315	Nalls MA	02/01/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21292315	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 European ancestry cases, 9,007 European ancestry controls	17q21.31	17	45637484	MAPT	CRHR1;CRHR1-IT1;MGC57346			1394;147081;401884			rs2942168-G	rs2942168	0	2942168	intron;nearGene-5;ncRNA	0	0.78	1E-28	28		   1.27	[1.23-1.31] 	Illumina [7,689,524] (imputed)	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	10q25.1	10	104086316	COL17A1	COL17A1			1308			rs1320448-?	rs1320448	0	1320448	nearGene-5	0	NR	2E-8	7.698970004336018	(additive, recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	1q41	1	216543195	ESRRG	ESRRG			2104			rs12757165-?	rs12757165	0	12757165	intron	0	NR	1E-7	7	(additive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	1p34.2	1	43130713	SLC2A1	SLC2A1-AS1 - FAM183A	440584	440585		      147.36	       14.42	rs16830359-?	rs16830359	0	16830359	Intergenic	1	NR	1E-7	7	(additive, recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.1	6	30125587	TRIM38	TRNAI25			100189401			rs10947055-?	rs10947055	0	10947055		0	NR	2E-7	6.698970004336019	(additive, recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	10q21.1	10	55657201	ZWINT	MTRNR2L5 - GAPDHP21	100463289	389970		       56.47	        9.94	rs1916521-?	rs1916521	0	1916521	Intergenic	1	NR	5E-7	6.30102999566398	(recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	10q23.1	10	80939735	NRG3	FARSBP1 - WARS2P1	647532	100421633		      161.66	         .91	rs1484170-?	rs1484170	0	1484170	Intergenic	1	NR	1E-6	5.999999999999999	(additive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	8q12.1	8	60091338	CA8	NUDT15P1 - CA8	574532	767		      533.42	       97.53	rs6995588-?	rs6995588	0	6995588	Intergenic	1	NR	2E-6	5.698970004336018	(additive,  dominant)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6q16.3	6	103984290	GRIK2	GRIK2 - R3HDM2P2	2898	100129694		     1914.21	       33.34	rs4520040-?	rs4520040	0	4520040	Intergenic	1	NR	3E-6	5.522878745280337	(additive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	3q13.13	3	109485566	DPPA4	LINC01205			401082			rs769554-?	rs769554	0	769554	intron	0	NR	3E-6	5.522878745280337	(additive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	6p22.3	6	22246375	SOX4	CASC14 - PRL	729177	5617		       99.18	       40.87	rs4236016-?	rs4236016	0	4236016	Intergenic	1	NR	4E-6	5.397940008672037	(additive, recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	15q12	15	25667192	UBE3A	UBE3A - ATP10A	7337	57194		      228.15	       11.52	rs17636733-?	rs17636733	0	17636733	Intergenic	1	NR	2E-7	6.698970004336019	(recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	13q14.2	13	47624581	HTR2A	GNG5P5 - NAP1L4P3	100101935	730174		      317.04	      138.98	rs1575891-?	rs1575891	0	1575891	Intergenic	1	NR	6E-6	5.221848749616356	(additive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	3p25.2	3	12585017	RAF1	RAF1			5894			rs3729931-?	rs3729931	0	3729931	intron	0	NR	7E-7	6.154901959985743	(dominant)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	1q32.2	1	208584241	PLXNA2	PLXNA2 - RPS26P13	5362	100271106		      339.92	      113.11	rs17259784-?	rs17259784	0	17259784	Intergenic	1	NR	6E-6	5.221848749616356	(recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	5q31.3	5	142638295	FGF1	FGF1			2246			rs152528-?	rs152528	0	152528	intron	0	NR	8E-7	6.096910013008056	(recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	12q14.1	12	60403922	FAM19A2	SLC16A7 - PGBD3P1	9194	267005		      614.07	      827.02	rs10506410-?	rs10506410	0	10506410	Intergenic	1	NR	2E-6	5.698970004336018	(dominant)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	15q14	15	39023157	C15orf54	C15orf53 - C15orf54	400359	400360		      323.12	      227.53	rs12907914-?	rs12907914	0	12907914	Intergenic	1	NR	1E-6	5.999999999999999	(recessive)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	20p12.2	20	11194255	C20orf94,BTBD3,SNAP25,MKK5,JAG1	FAT1P1 - RPS11P1	170513	128718		      305.17	      151.13	rs2207418-?	rs2207418	0	2207418	Intergenic	1	NR	9E-6	5.045757490560675	(dominant)	NR	NR	Affymetrix [361,034]	N
03/28/2011	21348951	Parsa A	02/01/2011	Clin Transl Sci	http://www.ncbi.nlm.nih.gov/pubmed/21348951	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	13q14.2	13	49506711	PHF11	PHF11			51131			rs2031532-?	rs2031532	0	2031532	cds-synon	0	NR	5E-6	5.301029995663981	(recessive)	NR	NR	Affymetrix [361,034]	N
03/17/2011	21278746	Lindstrom S	01/30/2011	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21278746	Common variants in ZNF365 are associated with both mammographic density and breast cancer risk.	Mammographic density	4,877 European ancestry women	1,145 European ancestry women, 1,690 Other ancestry women	10q21.2	10	62518923	ZNF365	ZNF365			22891			rs10995190-A	rs10995190	0	10995190	intron	0	0.15	1E-9	8.999999999999998		    .18	[0.12-0.25] % decrease	Affymetrix & Illumina [~2 million] (imputed)	N
01/20/2012	21298047	Chen X	01/27/2011	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21298047	The nuclear transcription factor PKNOX2 is a candidate gene for substance dependence in European-origin women.	Substance dependence	2,524 European ancestry individuals, 1,103 African ancestry individuals	NA	11q24.2	11	125309957	PKNOX2	PKNOX2			63876			rs12284594-G	rs12284594	0	12284594	intron	0	NR	7E-8	7.154901959985742	(European women)	   1.77	[NR] 	Illumina [830,696]	N
03/02/2011	21273288	Del Greco M F	01/27/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21273288	Genome-wide association analysis and fine mapping of NT-proBNP level provide novel insight into the role of the MTHFR-CLCN6-NPPA-NPPB gene cluster.	Natriuretic peptide levels	1,325 European ancestry individuals	1,746 European ancestry individuals	1p36.22	1	11838976	CLCN6	CLCN6;NPPA-AS1			1185;100379251			rs1023252-T	rs1023252	0	1023252	intron;nearGene-5	0	0.26	4E-16	15.39794000867204		    .20	[0.16-0.24] unit increase	Illumina [~2.5 million] (imputed)	N
03/02/2011	21273288	Del Greco M F	01/27/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21273288	Genome-wide association analysis and fine mapping of NT-proBNP level provide novel insight into the role of the MTHFR-CLCN6-NPPA-NPPB gene cluster.	Natriuretic peptide levels	1,325 European ancestry individuals	1,746 European ancestry individuals	5q15	5	93231833	CCT7P2	CCT7P2 - POLD2P1	100288772	391811		      340.91	       35.51	rs4869419-G	rs4869419	0	4869419	Intergenic	1	0.08	4E-6	5.397940008672037		    .20	[0.12-0.28] unit decrease	Illumina [~2.5 million] (imputed)	N
03/02/2011	21273288	Del Greco M F	01/27/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21273288	Genome-wide association analysis and fine mapping of NT-proBNP level provide novel insight into the role of the MTHFR-CLCN6-NPPA-NPPB gene cluster.	Natriuretic peptide levels	1,325 European ancestry individuals	1,746 European ancestry individuals	22q13.33	22	49692725	BRD1	MIR3667 - RPL5P35	100500882	100129647		      149.26	       64.83	rs6009824-A	rs6009824	0	6009824	Intergenic	1	0.15	7E-6	5.154901959985742		    .13	[0.071-0.189] unit decrease	Illumina [~2.5 million] (imputed)	N
03/18/2011	21298027	Festen EA	01/27/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21298027	A meta-analysis of genome-wide association scans identifies IL18RAP, PTPN2, TAGAP, and PUS10 as shared risk loci for Crohn's disease and celiac disease.	Crohn's disease and celiac disease	3,230 European ancestry Crohn's disease cases, 768 European ancestry celiac disease cases, 6,251 European ancestry controls	1,835 European ancestry Crohn's disease cases, 3,149 European ancestry celiac disease cases, 6,383 European ancestry controls	2p16.1	2	60990407	PUS10	PUS10			150962			rs10188217-C	rs10188217	0	10188217	intron	0	NR	1E-11	11	(combined)	NR	NR	Affymetrix & Illumina [471,504]	N
03/18/2011	21298027	Festen EA	01/27/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21298027	A meta-analysis of genome-wide association scans identifies IL18RAP, PTPN2, TAGAP, and PUS10 as shared risk loci for Crohn's disease and celiac disease.	Crohn's disease and celiac disease	3,230 European ancestry Crohn's disease cases, 768 European ancestry celiac disease cases, 6,251 European ancestry controls	1,835 European ancestry Crohn's disease cases, 3,149 European ancestry celiac disease cases, 6,383 European ancestry controls	6q25.3	6	159069404	TAGAP	TAGAP - FNDC1	117289	84624		       24.25	       99.99	rs212388-C	rs212388	0	212388	Intergenic	1	NR	2E-10	9.698970004336017	(combined)	NR	NR	Affymetrix & Illumina [471,504]	N
03/28/2011	21270382	Baik I	01/26/2011	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/21270382	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry males	1,113 Korean ancestry males	12q24.13	12	112207597	C12orf51,ALDH2	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	0.15	9E-59	58.04575749056067		   1.06	[0.94-1.18] unit decrease	Affymetrix [315,914]	N
03/28/2011	21270382	Baik I	01/26/2011	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/21270382	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry males	1,113 Korean ancestry males	12q24.11	12	110976657	MYL2	MYL2 - CUX2	4633	23316		       56.06	       57.37	rs12229654-G	rs12229654	0	12229654	Intergenic	1	0.14	4E-35	34.39794000867204		    .79	[0.67-0.91] unit decrease	Affymetrix [315,914]	N
03/28/2011	21270382	Baik I	01/26/2011	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/21270382	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry males	1,113 Korean ancestry males	12q24.11	12	110895818	CCDC63	CCDC63			160762			rs10849915-G	rs10849915	0	10849915	intron	0	0.18	1E-23	23		    .55	[0.45-0.65] unit decrease	Affymetrix [315,914]	N
03/28/2011	21270382	Baik I	01/26/2011	Am J Clin Nutr	http://www.ncbi.nlm.nih.gov/pubmed/21270382	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry males	1,113 Korean ancestry males	12q24.13	12	112971371	OAS3	OAS3			4940			rs2072134-A	rs2072134	0	2072134	UTR-3	0	0.11	6E-17	16.22184874961636		    .61	[0.49-0.73] unit decrease	Affymetrix [315,914]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	2q35	2	217041109	Intergenic	TNP1 - DIRC3	7141	729582		      181.05	      242.91	rs13387042-A	rs13387042	0	13387042	Intergenic	1	0.52	2E-10	9.698970004336017		   1.16	[1.11-1.22] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	3p24.1	3	27374522	SLC4A7	SLC4A7			9497			rs4973768-C	rs4973768	0	4973768	UTR-3	0	0.49	2E-8	7.698970004336018		   1.14	[1.09-1.19] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	5p12	5	44662413	Intergenic	FGF10-AS1 - MRPS30	101927075	10884		      248.42	      146.51	rs4415084-T	rs4415084	0	4415084	Intergenic	1	0.42	8E-11	10.09691001300805		   1.17	[1.11-1.22] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	8q24.21	8	127375606	Intergenic	LOC101930033			101930033			rs1562430-A	rs1562430	0	1562430	intron	0	0.60	3E-11	10.52287874528034		   1.16	[1.11-1.22] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	10q26.13	10	121586676	FGFR2	FGFR2			2263			rs1219648-?	rs1219648	0	1219648	intron	0	0.42	1E-30	30		   1.31	[1.25-1.37] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	16q12.2	16	52601252	TOX3	CASC16			643714			rs3112612-T	rs3112612	0	3112612	intron	0	0.43	4E-10	9.397940008672037		   1.15	[1.10-1.21] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	9q31.2	9	108126198	KLF4,RAD23B,ACTL7A	CHCHD4P2 - RPL36P14	100128657	347292		       28.35	      500.57	rs865686-T	rs865686	0	865686	Intergenic	1	0.61	2E-10	9.698970004336017		   1.12	[1.09-1.18] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	6q25.1	6	151618215	ESR1	CCDC170			80129			rs3734805-C	rs3734805	0	3734805	UTR-3	0	0.08	1E-7	7		   1.19	[1.11-1.27] 	Illumina [~296,114]	N
03/04/2011	21263130	Fletcher O	01/24/2011	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/21263130	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	10q26.13	10	121865675	FGFR2	ATE1			11101			rs10510102-G	rs10510102	0	10510102	intron	0	0.17	2E-6	5.698970004336018		   1.12	[1.07-1.17] 	Illumina [~296,114]	N
03/01/2011	21245432	Spraggs CF	01/24/2011	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/21245432	HLA-DQA1*02:01 is a major risk factor for lapatinib-induced hepatotoxicity in women with advanced breast cancer.	Lapatinib-induced hepatotoxicity in breast cancer	26 European ancestry cases, 11 cases, 196 European ancestry controls, 90 controls	21 European ancestry cases, 3 cases, 123 European ancestry controls, 32 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [1,111,203]	N
03/02/2011	21283782	Tore S	01/20/2011	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21283782	Application of a new method for GWAS in a related case/control sample with known pedigree structure: identification of new loci for nephrolithiasis.	Nephrolithiasis	80 Sardinian cases, 94 Sardinian controls	125 European ancestry cases, 157 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [334,674]	N
03/01/2011	21248740	Simon-Sanchez J	01/19/2011	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21248740	Genome-wide association study confirms extant PD risk loci among the Dutch.	Parkinson's disease	772 European ancestry cases, 2,024 European ancestry controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [514,799]	N
03/02/2011	21244703	Wang JH	01/18/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21244703	Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.	Multiple sclerosis	2,124 cases, 6,720 controls	1,618 cases, 1,988 controls	11q12.2	11	61026179	CD6	TRNAA45P - CD5	100189469	921		       30.07	       76.28	rs4939490-?	rs4939490	0	4939490	Intergenic	1	NR	1E-9	8.999999999999998		   1.30	[1.19-1.42] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
03/02/2011	21244703	Wang JH	01/18/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21244703	Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.	Multiple sclerosis	2,124 cases, 6,720 controls	1,618 cases, 1,988 controls	1p13.1	1	116495665	CD58	ATP1A1-AS1 - CD58	84852	965		       77.04	       18.87	rs12025416-?	rs12025416	0	12025416	Intergenic	1	NR	1E-7	7		   1.45	[1.25-1.69] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
03/02/2011	21244703	Wang JH	01/18/2011	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/21244703	Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.	Multiple sclerosis	2,124 cases, 6,720 controls	1,618 cases, 1,988 controls	5p13.2	5	35803475	IL7R	SPEF2			79925			rs931555-?	rs931555	0	931555	intron	0	NR	4E-7	6.397940008672037		   1.25	[1.15-1.36] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
02/25/2011	21242260	Cui R	01/17/2011	Gut	http://www.ncbi.nlm.nih.gov/pubmed/21242260	Common variant in 6q26-q27 is associated with distal colon cancer in an Asian population.	Colorectal cancer	1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	4,584 Japanese ancestry cases, 225 Korean ancestry distal cases, 2,973 East Asian ancestry controls	6q25.3	6	160419220	SLC22A3	SLC22A3			6581			rs7758229-T	rs7758229	0	7758229	intron	0	NR	8E-9	8.096910013008056	(distal colon cancer)	   1.28	[1.18-1.39] 	Illumina [391,749]	N
02/25/2011	21242260	Cui R	01/17/2011	Gut	http://www.ncbi.nlm.nih.gov/pubmed/21242260	Common variant in 6q26-q27 is associated with distal colon cancer in an Asian population.	Colorectal cancer	1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	4,584 Japanese ancestry cases, 225 Korean ancestry distal cases, 2,973 East Asian ancestry controls	8q24.21	8	127401060	Intergenic	CCAT2;LOC101930033			101805488;101930033			rs6983267-G	rs6983267	0	6983267	ncRNA;intron	0	0.34	2E-8	7.698970004336018	(colorectal cancer)	   1.18	[1.11-1.25] 	Illumina [391,749]	N
02/25/2011	21242121	Frullanti E	01/17/2011	Clin Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/21242121	Multiple genetic loci modulate lung adenocarcinoma clinical staging.	Lung adenocarcinoma (clinical stage)	600 European ancestry cases 	317 European ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [620,901] (pooled)	N
02/23/2011	21239051	Reilly MP	01/14/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21239051	Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies.	Coronary heart disease	1,808 European ancestry AngCAD cases, 915 European ancestry AngCAD controls, 4,572 European ancestry AngCAD with MI cases, 2,739 European ancestry AngCAD without MI controls	10,585 European ancestry AngCAD cases, 6,468 European ancestry AngCAD controls, 1,211 European ancestry AngCAD with MI cases, 905 European ancestry AngCAD without MI controls	15q25.1	15	78787892	ADAMTS7	ADAMTS7			11173			rs1994016-C	rs1994016	0	1994016	intron	0	0.60	5E-13	12.30102999566398	(AngCAD)	   1.19	[1.13-1.24] 	Affymetrix & Illumina [~2.4 million] (imputed)	N
02/23/2011	21239051	Reilly MP	01/14/2011	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/21239051	Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies.	Coronary heart disease	1,808 European ancestry AngCAD cases, 915 European ancestry AngCAD controls, 4,572 European ancestry AngCAD with MI cases, 2,739 European ancestry AngCAD without MI controls	10,585 European ancestry AngCAD cases, 6,468 European ancestry AngCAD controls, 1,211 European ancestry AngCAD with MI cases, 905 European ancestry AngCAD without MI controls	9q34.2	9	133266790	ABO	ABO			28			rs514659-C	rs514659	0	514659	intron	0	0.37	8E-9	8.096910013008056	(AngCAD/MI)	   1.21	[1.13-1.28] 	Affymetrix & Illumina [~2.4 million] (imputed)	N
02/23/2011	21228123	Ochi H	01/12/2011	J Gen Virol	http://www.ncbi.nlm.nih.gov/pubmed/21228123	IL-28B predicts response to chronic hepatitis C therapy--fine-mapping and replication study in Asian populations.	Response to hepatitis C treatment	2,101 East Asian ancestry cases, 282 Japanese ancestry controls	NA	19q13.2	19	39252525	IL28B	IFNL4 - MSRB1P1	101180976	441849		        3.67	        2.39	rs8099917-G	rs8099917	0	8099917	Intergenic	1	0.083	1E-20	20		   3.00	[2.4-3.8] 	Illumina [510,537]	N
03/27/2012	22384361	Cheng YC	01/11/2011	G3 (Bethesda)	http://www.ncbi.nlm.nih.gov/pubmed/22384361	Genome-wide association analysis of ischemic stroke in young adults.	Stroke	466 European ancestry cases, 377 African American cases, 46 East Asian, Asian, and other ancestry cases, 523 European ancestry controls, 357 African American controls, 47 East Asian, Asian, and other ancestry controls	1,586 European ancestry cases, 2,690 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [1,421,999] (imputed)	N
02/16/2011	21155030	Cheong MY	01/11/2011	Yonsei Med J	http://www.ncbi.nlm.nih.gov/pubmed/21155030	Association of the adiponectin gene variations with risk of ischemic stroke in a Korean population.	Stroke (ischemic)	160 Korean ancestry cases, 160 Korean ancestry controls	673 Korean ancestry cases, 267 Korean ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~320,250]	N
02/23/2011	21221126	Shen Y	01/11/2011	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/21221126	Genome-wide association study of serious blistering skin rash caused by drugs.	Stevens-Johnson syndrome and toxic epidermal necrolysis (SJS-TEN)	160 European ancestry cases, 4,819 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~1 million] (imputed)	N
03/04/2011	21223598	Wineinger NE	01/11/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21223598	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	3p14.2	3	59917075	FHIT	FHIT			2272			rs1825630-?	rs1825630	0	1825630	intron	0	0.44	8E-6	5.096910013008055		    .09	[0.053-0.136] cm increase	Affymetrix [NR]	N
03/04/2011	21223598	Wineinger NE	01/11/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21223598	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	7q11.21	7	66152608	CRCP	CRCP			27297			rs875971-?	rs875971	0	875971	ncRNA	0	0.32	4E-6	5.397940008672037		    .11	[0.063-0.151] cm increase	Affymetrix [NR]	N
03/04/2011	21223598	Wineinger NE	01/11/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21223598	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	7q11.21	7	66565625	LOC401365, LOC493754	SKP1P1 - RPL35P5	6922	441246		      141.64	       41.08	rs801193-?	rs801193	0	801193	Intergenic	1	0.34	4E-6	5.397940008672037		    .11	[0.068-0.155] cm increase	Affymetrix [NR]	N
03/04/2011	21223598	Wineinger NE	01/11/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21223598	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	7q11.21	7	66631041	KCTD7, RABGEF1	KCTD7			154881			rs10263935-?	rs10263935	0	10263935	intron	0	0.32	4E-7	6.397940008672037		    .11	[0.070-0.159] cm increase	Affymetrix [NR]	N
03/04/2011	21223598	Wineinger NE	01/11/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21223598	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	8q23.3	8	116544032	Intergenic	LINC00536 - EIF3H	100859921	8667		      218.97	      100.78	rs4876662-?	rs4876662	0	4876662	Intergenic	1	0.20	2E-6	5.698970004336018		    .13	[0.081-0.182] cm increase	Affymetrix [NR]	N
03/04/2011	21223598	Wineinger NE	01/11/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21223598	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	16q21	16	58725428	GOT2	GOT2			2806			rs12600277-?	rs12600277	0	12600277	intron	0	0.16	3E-6	5.522878745280337		    .14	[0.082-0.198] cm increase	Affymetrix [NR]	N
03/04/2011	21223598	Wineinger NE	01/11/2011	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/21223598	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	20p13	20	1960525	SIRPA, PDYN	LOC727993			727993			rs6045676-?	rs6045676	0	6045676	intron	0	0.36	3E-8	7.522878745280337		    .11	[0.070-0.159] cm increase	Affymetrix [NR]	N
01/27/2011	21221998	Kim JJ	01/09/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21221998	A genome-wide association analysis reveals 1p31 and 2p13.3 as susceptibility loci for Kawasaki disease.	Kawasaki disease	186 Korean ancestry child cases, 600 Korean ancestry controls	514 East Asian ancestry child cases, 1,042 East Asian ancestry controls	1p32.2	1	58292243	DAB1	VKORC1P2 - OMA1	414357	115209		       63.23	      188.48	rs527409-T	rs527409	0	527409	Intergenic	1	0.02	1E-6	5.999999999999999	(KD)	   2.90	[1.85-4.54] 	Affymetrix [641,760]	N
01/27/2011	21221998	Kim JJ	01/09/2011	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21221998	A genome-wide association analysis reveals 1p31 and 2p13.3 as susceptibility loci for Kawasaki disease.	Kawasaki disease	186 Korean ancestry child cases, 600 Korean ancestry controls	514 East Asian ancestry child cases, 1,042 East Asian ancestry controls	2p14	2	64122068	PELI1	PELI1			57162			rs7604693-G	rs7604693	0	7604693	intron	0	0.05	2E-6	5.698970004336018	(CAL)	   2.70	[1.77-4.12] 	Affymetrix [641,760]	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p12.3	7	45968511	IGFBP3	IGFBP3 - FTLP15	3486	442304		       47.24	       28.87	rs11977526-A	rs11977526	0	11977526	Intergenic	1	0.41	3E-101	100.5228787452803	(IGFBP-3)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p12.3	7	46713955	TNS3	HMGN1P19 - EPS15P1	100874445	55380		       79.01	       67.94	rs700752-G	rs700752	0	700752	Intergenic	1	0.65	4E-21	20.39794000867204	(IGFBP-3)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p12.3	7	46713955	TNS3	HMGN1P19 - EPS15P1	100874445	55380		       79.01	       67.94	rs700752-G	rs700752	0	700752	Intergenic	1	0.65	5E-9	8.301029995663981	(IGF-I)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	4p16.1	4	7218206	SORCS2	SORCS2			57537			rs4234798-T	rs4234798	0	4234798	intron	0	0.39	5E-10	9.301029995663981	(IGFBP-3)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	16p13.3	16	1788835	NUBP2, IGFALS	NUBP2			10101			rs1065656-G	rs1065656	0	1065656	missense	0	0.68	1E-11	11	(IGFBP-3)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	7p21.3	7	7843692	RPA3	RPA3OS			729852			rs7780564-C	rs7780564	0	7780564	intron	0	0.55	4E-7	6.397940008672037	(IGF-I)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	10q22.1	10	72089881	SPOCK2	SPOCK2			9806			rs1245541-G	rs1245541	0	1245541	nearGene-5	0	0.61	5E-7	6.30102999566398	(IGF-I)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/22/2011	21216879	Kaplan RC	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216879	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	6q21	6	108666981	FOXO3	FOXO3			2309			rs2153960-A	rs2153960	0	2153960	intron	0	0.69	5E-7	6.30102999566398	(IGF-I)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/27/2011	21216876	Sharma S	01/07/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21216876	Genome-wide association studies of adolescent idiopathic scoliosis suggest candidate susceptibility genes.	Adolescent idiopathic scoliosis	1,113 individuals from 418 families	562 European ancestry cases, 137 cases, 666 European ancestry controls, 2,126 controls	3p26.3	3	149364	CHL1,LOC642891	A1BG - CHL1		10752			       47.22	rs10510181-A	rs10510181	0	10510181	Intergenic	1	0.33	8E-7	6.096910013008056	(EA)	   1.37	[1.20-1.58] 	Illumina [326,498]	N
02/22/2011	21212386	Arnett DK	01/06/2011	Circ Res	http://www.ncbi.nlm.nih.gov/pubmed/21212386	Genetic variation in NCAM1 contributes to left ventricular wall thickness in hypertensive families.	Cardiac muscle measurement	1,258 Black individuals	989 Black individuals, 1,316 European ancestry individuals	11q23.2	11	113120896	NCAM1	NCAM1			4684			rs1436109-?	rs1436109	0	1436109	intron	0	NR	4E-9	8.397940008672036	(Relative wall thickness)	NR	NR	Affymetrix [872,242]	N
02/22/2011	21212386	Arnett DK	01/06/2011	Circ Res	http://www.ncbi.nlm.nih.gov/pubmed/21212386	Genetic variation in NCAM1 contributes to left ventricular wall thickness in hypertensive families.	Cardiac muscle measurement	1,258 Black individuals	989 Black individuals, 1,316 European ancestry individuals	11q23.2	11	113120896	NCAM1	NCAM1			4684			rs1436109-?	rs1436109	0	1436109	intron	0	NR	3E-7	6.522878745280337	(Posterior wall thickness)	NR	NR	Affymetrix [872,242]	N
02/22/2011	21212386	Arnett DK	01/06/2011	Circ Res	http://www.ncbi.nlm.nih.gov/pubmed/21212386	Genetic variation in NCAM1 contributes to left ventricular wall thickness in hypertensive families.	Cardiac muscle measurement	1,258 Black individuals	989 Black individuals, 1,316 European ancestry individuals	11q23.2	11	113120896	NCAM1	NCAM1			4684			rs1436109-?	rs1436109	0	1436109	intron	0	NR	9E-7	6.045757490560675	(Intraventricular septal thickness)	NR	NR	Affymetrix [872,242]	N
02/03/2011	21208937	Pichler I	01/04/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21208937	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron levels	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	7q22.1	7	100638347	TFR2	TFR2			7036			rs7385804-A	rs7385804	0	7385804	intron	0	0.65	7E-8	7.154901959985742	(iron)	   3.23	[2.05-4.41] ug/dl increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/03/2011	21208937	Pichler I	01/04/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21208937	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron levels	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	6p22.2	6	25821542	SLC17A1	SLC17A1			6568			rs17342717-C	rs17342717	0	17342717	intron	0	0.93	5E-9	8.301029995663981	(ferritin)	  36.50	[24.27-48.73] ng/ml decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/03/2011	21208937	Pichler I	01/04/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21208937	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron levels	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	3q22.1	3	133765185	TF	TF			7018			rs3811647-A	rs3811647	0	3811647	intron	0	0.29	3E-47	46.52287874528033	(transferrin)	  15.34	[13.26-17.42] mg/dl increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/03/2011	21208937	Pichler I	01/04/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21208937	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron levels	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	22q12.3	22	37073551	TMPRSS6	TMPRSS6			164656			rs4820268-G	rs4820268	0	4820268	cds-synon	0	0.47	4E-11	10.39794000867204	(iron)	   4.24	[2.99-5.49] ug/dl decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/03/2011	21208937	Pichler I	01/04/2011	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21208937	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron levels	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	6p22.2	6	26090951	HFE	HFE			3077			rs1799945-C	rs1799945	0	1799945	missense	0	0.83	3E-9	8.522878745280337	(iron)	   4.95	[3.30-6.60] ug/dl decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/03/2011	21211648	Ege MJ	01/01/2011	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/21211648	Gene-environment interaction for childhood asthma and exposure to farming in Central Europe.	Asthma or atopy (interaction)	850 European asthmatic child cases, 348 European atopic child cases, 510 European child controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2.5 million] (imputed)	N
01/16/2011	21196492	Okada Y	12/31/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21196492	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	1q23.2	1	159715346	CRP	CRP			1401			rs3093059-G	rs3093059	0	3093059	nearGene-5	0	0.12	4E-21	20.39794000867204		    .16	[0.13-0.19] unit increase	Illumina [477,784]	N
01/16/2011	21196492	Okada Y	12/31/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21196492	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	7p15.3	7	22693220	IL6	EEF1A1P6 - IL6	221838	3569		      181.17	       33.93	rs2097677-A	rs2097677	0	2097677	Intergenic	1	0.19	4E-11	10.39794000867204		    .10	[0.07-0.13] unit increase	Illumina [477,784]	N
01/16/2011	21196492	Okada Y	12/31/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21196492	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	12q24.31	12	120987058	HNF1A	HNF1A			6927			rs7310409-G	rs7310409	0	7310409	intron	0	0.47	3E-8	7.522878745280337		    .07	[0.04-0.10] unit increase	Illumina [477,784]	N
01/16/2011	21196492	Okada Y	12/31/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21196492	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	19q13.32	19	44919689	APOE-CI-CII cluster	APOC1			341			rs4420638-A	rs4420638	0	4420638	nearGene-3	0	0.90	3E-7	6.522878745280337		    .14	[0.09-0.19] unit increase	Illumina [477,784]	N
01/16/2011	21302353	Perroud N	12/28/2010	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21302353	Genome-wide association study of hoarding traits.	Hoarding	3,304 European ancestry individuals	NA	6q14.1	6	79547564	LCA5	LCA5 - SH3BGRL2	167691	83699		       10.13	       83.72	rs3747767-A	rs3747767	0	3747767	Intergenic	1	0.03	7E-7	6.154901959985743		   1.81	[NR] unit increase	Illumina [1,517,033] (imputed)	N
01/16/2011	21302353	Perroud N	12/28/2010	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21302353	Genome-wide association study of hoarding traits.	Hoarding	3,304 European ancestry individuals	NA	5q11.2	5	58025127	Intergenic	ACTBL2 - PGAM1P1	345651	100130514		      542.32	      136.07	rs1844437-C	rs1844437	0	1844437	Intergenic	1	0.22	2E-6	5.698970004336018		    .62	[NR] unit decrease	Illumina [1,517,033] (imputed)	N
01/16/2011	21302353	Perroud N	12/28/2010	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21302353	Genome-wide association study of hoarding traits.	Hoarding	3,304 European ancestry individuals	NA	15q26.2	15	94146424	Intergenic	SEPHS1P2 - MCTP2	100420292	55784		      715.21	       85.12	rs2388436-G	rs2388436	0	2388436	Intergenic	1	0.42	6E-6	5.221848749616356		    .51	[NR] unit increase	Illumina [1,517,033] (imputed)	N
07/10/2014	21253498	Benjamin AM	12/26/2010	J Obes	http://www.ncbi.nlm.nih.gov/pubmed/21253498	Gene by sex interaction for measures of obesity in the framingham heart study.	Body mass index	9,091 European ancestry individuals	2,872 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [360,811]	N
07/10/2014	21253498	Benjamin AM	12/26/2010	J Obes	http://www.ncbi.nlm.nih.gov/pubmed/21253498	Gene by sex interaction for measures of obesity in the framingham heart study.	Body mass index (sex interaction)	9,091 European ancestry individuals	2,872 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [360,811]	N
07/10/2014	21253498	Benjamin AM	12/26/2010	J Obes	http://www.ncbi.nlm.nih.gov/pubmed/21253498	Gene by sex interaction for measures of obesity in the framingham heart study.	Waist circumference (sex interaction)	2,314 European ancestry individuals	2,872 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [360,811]	N
07/10/2014	21253498	Benjamin AM	12/26/2010	J Obes	http://www.ncbi.nlm.nih.gov/pubmed/21253498	Gene by sex interaction for measures of obesity in the framingham heart study.	Waist to hip ratio (sex interaction)	2,314 European ancestry individuals	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [360,811]	N
01/16/2011	21186350	Zhou K	12/26/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21186350	Common variants near ATM are associated with glycemic response to metformin in type 2 diabetes.	Response to metformin in type 2 diabetes (glycemic)	1,024 European ancestry cases	2,896 European ancestry cases	11q22.3	11	108412434	ATM, C111orf65	C11orf65			160140			rs11212617-C	rs11212617	0	11212617	intron	0	0.44	3E-9	8.522878745280337		   1.35	[1.22-1.49] 	Affymetrix [705,125]	N
11/20/2013	21183627	Bouchard C	12/23/2010	J Appl Physiol (1985)	http://www.ncbi.nlm.nih.gov/pubmed/21183627	Genomic predictors of the maximal O&#x02082; uptake response to standardized exercise training programs.	Maximal oxygen uptake response	470 European ancestry individuals from 99 families	295 individuals, 247 Black ancestry individuals from 105 families 	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [324,611]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	14q23.3	14	65291924	FUT8	PTBP1P - MIR4708	122888	100616176		       10.27	       43.19	rs7159888-A	rs7159888	0	7159888	Intergenic	1	0.44	3E-18	17.52287874528034	(DG1)	    .26	[0.20-0.32] unit increase	Illumina [~300,000]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	12q24.31	12	121001041	HNF1A,C12orf43,OASL	HNF1A			6927			rs735396-G	rs735396	0	735396	intron	0	0.38	4E-8	7.397940008672037	(DG11)	    .17	[0.11-0.23] unit increase	Illumina [~300,000]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	19	5839735	NRTN,FUT6,FUT3	FUT6			2528			rs3760776-A	rs3760776	0	3760776	nearGene-5	0	0.11	3E-12	11.52287874528034	(DG7)	    .34	[0.24-0.44] unit decrease	Illumina [~300,000]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	14q23.3	14	65448149	FUT8	FUT8			2530			rs10483776-G	rs10483776	0	10483776	intron	0	0.21	1E-8	8	(DG6)	    .22	[0.14-0.30] unit decrease	Illumina [~300,000]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	12q24.31	12	120965921	HNF1A,C12orf43,OASL	RPL12P33 - HNF1A-AS1	643550	283460		       48.64	        3.92	rs7953249-G	rs7953249	0	7953249	Intergenic	1	0.45	2E-8	7.698970004336018	(DG7)	    .17	[0.11-0.23] unit decrease	Illumina [~300,000]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	19	5839735	NRTN,FUT6,FUT3	FUT6			2528			rs3760776-A	rs3760776	0	3760776	nearGene-5	0	0.11	4E-17	16.39794000867203	(DG9)	    .41	[0.31-0.51] unit decrease	Illumina [~300,000]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	19	5839735	NRTN,FUT6,FUT3	FUT6			2528			rs3760776-A	rs3760776	0	3760776	nearGene-5	0	0.11	9E-10	9.045757490560675	(DG12)	    .30	[0.20-0.40] unit decrease	Illumina [~300,000]	N
01/15/2011	21203500	Lauc G	12/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21203500	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1&#x003b1; as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	19	5839735	NRTN,FUT6,FUT3	FUT6			2528			rs3760776-A	rs3760776	0	3760776	nearGene-5	0	0.11	1E-12	12	(FUC-A)	    .34	[0.24-0.44] unit decrease	Illumina [~300,000]	N
01/18/2011	21177773	Moyer AM	12/22/2010	Toxicol Sci	http://www.ncbi.nlm.nih.gov/pubmed/21177773	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	3p11.1	3	88475025	C3orf38	ABCF2P1 - NDUFA5P5	344653	100130327		      156.00	      126.04	rs2880961-?	rs2880961	0	2880961	Intergenic	1	0.34	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [1,348,864]	N
01/18/2011	21177773	Moyer AM	12/22/2010	Toxicol Sci	http://www.ncbi.nlm.nih.gov/pubmed/21177773	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	1q23.3	1	165210852	LMX1A	LMX1A			4009			rs1532815-?	rs1532815	0	1532815	intron	0	0.34	6E-7	6.221848749616355		NR	NR	Affymetrix & Illumina [1,348,864]	N
01/18/2011	21177773	Moyer AM	12/22/2010	Toxicol Sci	http://www.ncbi.nlm.nih.gov/pubmed/21177773	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	Xq28	23	148242736	LOC100129661	FTH1P8 - RPL7L1P11	2501	347509		      189.81	      221.95	rs5936441-?	rs5936441	0	5936441	Intergenic	1	0.36	5E-6	5.301029995663981		NR	NR	Affymetrix & Illumina [1,348,864]	N
01/18/2011	21177773	Moyer AM	12/22/2010	Toxicol Sci	http://www.ncbi.nlm.nih.gov/pubmed/21177773	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	4q34.1	4	174379628	KIAA1712	CEP44 - MIR4276	80817	100423042		       46.25	       44.17	rs6852435-?	rs6852435	0	6852435	Intergenic	1	0.27	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [1,348,864]	N
01/18/2011	21177773	Moyer AM	12/22/2010	Toxicol Sci	http://www.ncbi.nlm.nih.gov/pubmed/21177773	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	1q32.1	1	204143856	ETNK2	ETNK2			55224			rs3795578-?	rs3795578	0	3795578	intron	0	0.40	7E-6	5.154901959985742		NR	NR	Affymetrix & Illumina [1,348,864]	N
01/16/2011	21177295	Panoutsopoulou K	12/21/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21177295	Insights into the genetic architecture of osteoarthritis from stage 1 of the arcOGEN study.	Osteoarthritis	3,177 European ancestry cases, 4,894 European ancestry controls	10,312 European ancestry cases, 45,861 European ancestry controls, 213 cases, 2,531 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [514,898]	N
01/15/2011	21173776	de Moor MH	12/21/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21173776	Meta-analysis of genome-wide association studies for personality.	Personality dimensions	17,375 European ancestry individuals	3,294 European ancestry individuals	5q14.3	5	87136800	RASA1	LOC101929380			101929380			rs2032794-C	rs2032794	0	2032794	intron	0	NR	2E-6	5.698970004336018	(openness to experience)	    .48	[0.30-0.66] unit increase	Affymetrix, Illumina & Perlegen [~2.5 million] (imputed)	N
01/15/2011	21173776	de Moor MH	12/21/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21173776	Meta-analysis of genome-wide association studies for personality.	Personality dimensions	17,375 European ancestry individuals	3,294 European ancestry individuals	18q21.1	18	47059049	KATNAL2	KATNAL2			83473			rs2576037-T	rs2576037	0	2576037	intron	0	NR	1E-7	7	(conscientiousness)	    .41	[0.27-0.55] unit decrease	Affymetrix, Illumina & Perlegen [~2.5 million] (imputed)	N
01/15/2011	21197116	Ryu E	12/17/2010	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/21197116	Genome-wide association analyses of genetic, phenotypic, and environmental risks in the age-related eye disease study.	Age-related macular degeneration	576 European ancestry individuals, 12 Black individuals and 2 other ancestry individuals	444 European ancestry and Hispanic cases, 300 European ancestry and Hispanic controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [103,895]	N
01/13/2011	21160077	Gudmundsson J	12/15/2010	Sci Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/21160077	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	5p15.33	5	1321972	TERT	CLPTM1L			81037			rs401681-C	rs401681	0	401681	intron	0	0.55	1E-10	10		   7.00	[NR] % increase	Illumina [304,070]	N
01/13/2011	21160077	Gudmundsson J	12/15/2010	Sci Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/21160077	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	10q26.12	10	121274035	FGFR2	LINC01153 - FGFR2	101927889	2263		       88.07	      204.30	rs10788160-A	rs10788160	0	10788160	Intergenic	1	0.31	5E-15	14.30102999566398		  10.20	[NR] % increase	Illumina [304,070]	N
01/13/2011	21160077	Gudmundsson J	12/15/2010	Sci Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/21160077	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	10q11.23	10	46046326	MSMB	MSMB			4477			rs10993994-T	rs10993994	0	10993994	nearGene-5	0	0.39	7E-13	12.15490195998574		   9.20	[NR] % increase	Illumina [304,070]	N
01/13/2011	21160077	Gudmundsson J	12/15/2010	Sci Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/21160077	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	12q24.21	12	114656455	TBX3	OSTF1P1 - TBX3	386654	6926		       67.66	       13.80	rs11067228-A	rs11067228	0	11067228	Intergenic	1	0.56	2E-11	10.69897000433602		   8.30	[NR] % increase	Illumina [304,070]	N
01/13/2011	21160077	Gudmundsson J	12/15/2010	Sci Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/21160077	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	17q12	17	37738049	HNF1B	HNF1B			6928			rs4430796-A	rs4430796	0	4430796	intron	0	0.52	6E-11	10.22184874961635		   9.40	[NR] % increase	Illumina [304,070]	N
01/13/2011	21160077	Gudmundsson J	12/15/2010	Sci Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/21160077	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	19q13.33	19	50858501	KLK3	KLK3			354			rs17632542-T	rs17632542	0	17632542	missense	0	0.91	3E-46	45.52287874528034		  39.10	[NR] % increase	Illumina [304,070]	N
01/13/2011	21160077	Gudmundsson J	12/15/2010	Sci Transl Med	http://www.ncbi.nlm.nih.gov/pubmed/21160077	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	19q13.33	19	50845834	NR	KLK15 - KLK3	55554	354		       12.29	        9.08	rs266849-A	rs266849	0	266849	Intergenic	1	0.83	6E-10	9.221848749616356		NR	NR	Illumina [304,070]	N
01/14/2011	21211798	Yamada Y	12/15/2010	Atherosclerosis	http://www.ncbi.nlm.nih.gov/pubmed/21211798	Association of a polymorphism of BTN2A1 with myocardial infarction in East Asian populations.	Myocardial infarction	134 Japanese ancestry cases, 137 Japanese ancestry controls	3,954 East Asian ancestry cases, 13,222 East Asian ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~500,000]	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	2p21	2	41853484	RPS12P4	RPS12P4 - C2orf91	391370	400950		        2.80	       81.88	rs4305317-?	rs4305317	0	4305317	Intergenic	1	NR	2E-6	5.698970004336018	(ACPA-negative RA vs controls)	   1.45	[1.25-1.69] 	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	7p12.3	7	45864208	IGFBP1	CICP20 - IGFBP1	100129050	3484		       45.19	       24.15	rs6956740-?	rs6956740	0	6956740	Intergenic	1	NR	5E-7	6.30102999566398	(ACPA-negative RA vs controls)	   3.49	[2.08-5.85] 	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	7q32.1	7	128940626	IRF5	IRF5			3663			rs3807306-?	rs3807306	0	3807306	intron	0	NR	3E-7	6.522878745280337	(ACPA-negative RA vs controls)	   1.44	[1.25-1.66] 	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-?	rs2476601	0	2476601	missense;intron	0	NR	1E-8	8	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	11q24.1	11	121927189	HLA	SORL1 - MIR100HG	6653	399959		      293.43	      161.91	rs1219414-?	rs1219414	0	1219414	Intergenic	1	NR	5E-58	57.30102999566397	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	2p21	2	41853484	LDHAL3	RPS12P4 - C2orf91	391370	400950		        2.80	       81.88	rs4305317-?	rs4305317	0	4305317	Intergenic	1	NR	4E-8	7.397940008672037	(ACPA-positive RA vs ACPA-negative RA)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	4p15.2	4	22089761	KCNIP4, GPR125	KCNIP4-IT1 - GPR125	359822	166647		      236.57	      297.61	rs6448119-?	rs6448119	0	6448119	Intergenic	1	NR	7E-6	5.154901959985742	(ACPA-positive RA vs ACPA-negative RA)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	5q35.3	5	178186543	GMCL1L	GMCL1P1			64396			rs2961663-?	rs2961663	0	2961663	ncRNA	0	NR	4E-6	5.397940008672037	(ACPA-positive RA vs ACPA-negative RA)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	NR	6	32533367	HLA	TRNAI25			100189401			rs2157337-?	rs2157337	0	2157337		0	NR	9E-52	51.04575749056067	(ACPA-positive RA vs ACPA-negative RA)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	13	64317065	NR	NFYAP1 - LGMNP1	100130677	122199		      340.64	      640.49	rs11148643-?	rs11148643	0	11148643	Intergenic	1	NR	5E-7	6.30102999566398	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	13	64356863	NR	NFYAP1 - LGMNP1	100130677	122199		      380.44	      600.69	rs1340317-?	rs1340317	0	1340317	Intergenic	1	NR	3E-7	6.522878745280337	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	13	64362111	NR	NFYAP1 - LGMNP1	100130677	122199		      385.69	      595.45	rs9571178-?	rs9571178	0	9571178	Intergenic	1	NR	3E-7	6.522878745280337	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	13	64366135	NR	NFYAP1 - LGMNP1	100130677	122199		      389.71	      591.42	rs12873872-?	rs12873872	1	4261405	Intergenic	1	NR	3E-7	6.522878745280337	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	13	64371042	NR	NFYAP1 - LGMNP1	100130677	122199		      394.62	      586.51	rs9598783-?	rs9598783	0	9598783	Intergenic	1	NR	3E-7	6.522878745280337	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	13	64372566	NR	NFYAP1 - LGMNP1	100130677	122199		      396.14	      584.99	rs2220327-?	rs2220327	0	2220327	Intergenic	1	NR	1E-7	7	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
07/02/2014	21156761	Padyukov L	12/14/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21156761	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls 	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	13	64376290	NR	NFYAP1 - LGMNP1	100130677	122199		      399.87	      581.27	rs1340319-?	rs1340319	0	1340319	Intergenic	1	NR	3E-7	6.522878745280337	(ACPA-positive RA vs controls)	NR	NR	Illumina [1,723,056] (imputed)	N
01/19/2011	21160409	Petrovski S	12/14/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/21160409	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	9p24.1	9	7682601	AL591509.5	PPIAP33 - TMEM261	392285	90871		       84.23	      113.89	rs842304-?	rs842304	0	842304	Intergenic	1	0.42	4E-6	5.397940008672037		NR	NR	Illumina [~800,000]	N
01/19/2011	21160409	Petrovski S	12/14/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/21160409	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	18q21.31	18	56188294	AC009271.7	FLJ45743			642484			rs12604483-?	rs12604483	0	12604483	ncRNA	0	0.30	7E-6	5.154901959985742		NR	NR	Illumina [~800,000]	N
01/19/2011	21160409	Petrovski S	12/14/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/21160409	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	3q29	3	196201983	ZDHHC19	ZDHHC19			131540			rs11924930-?	rs11924930	0	11924930	intron	0	0.40	7E-6	5.154901959985742		NR	NR	Illumina [~800,000]	N
01/19/2011	21160409	Petrovski S	12/14/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/21160409	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	15q26.1	15	92635945	FAM174B	FAM174B			400451			rs285757-?	rs285757	0	285757	intron	0	0.15	7E-6	5.154901959985742		NR	NR	Illumina [~800,000]	N
01/19/2011	21160409	Petrovski S	12/14/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/21160409	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	10q26.3	10	130258151	GLRX3, TXNL3	GLRX3 - MIR378C	10539	100422867		       77.77	      704.44	rs4751185-?	rs4751185	0	4751185	Intergenic	1	0.12	7E-6	5.154901959985742		NR	NR	Illumina [~800,000]	N
01/19/2011	21160409	Petrovski S	12/14/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/21160409	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	11q23.3	11	116649810	BUD13	LOC101929011			101929011			rs1240773-?	rs1240773	0	1240773	intron	0	0.12	8E-6	5.096910013008055		NR	NR	Illumina [~800,000]	N
01/16/2011	21151128	Chen ZJ	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151128	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	2p16.3	2	48751020	GTF2A1L,LHCGR,FSHR	LHCGR;STON1-GTF2A1L			3973;286749			rs13405728-A	rs13405728	0	13405728	intron;intron	0	0.76	8E-21	20.09691001300805		   1.41	[1.30-1.49] 	Affymetrix [611,633]	N
01/16/2011	21151128	Chen ZJ	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151128	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	2p21	2	43494369	ZFP36L2,LOC100129726,THADA	THADA			63892			rs12478601-C	rs12478601	0	12478601	intron	0	0.71	3E-23	22.52287874528034		   1.39	[1.30-1.49] 	Affymetrix [611,633]	N
01/16/2011	21151128	Chen ZJ	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151128	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	9q33.3	9	123762933	DENND1A	DENND1A			57706			rs2479106-G	rs2479106	0	2479106	intron	0	0.22	8E-19	18.09691001300805		   1.34	[1.26-1.43] 	Affymetrix [611,633]	N
01/16/2011	21151128	Chen ZJ	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151128	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	2p21	2	43411699	ZFP36L2,LOC100129726,THADA	THADA			63892			rs13429458-A	rs13429458	0	13429458	intron	0	0.91	2E-23	22.69897000433602		   1.49	[1.39-1.61] 	Affymetrix [611,633]	N
01/16/2011	21151128	Chen ZJ	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151128	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	9q33.3	9	123684499	DENND1A	DENND1A			57706			rs10818854-A	rs10818854	0	10818854	intron	0	0.09	9E-18	17.04575749056067		   1.51	[1.37-1.65] 	Affymetrix [611,633]	N
01/15/2011	21151127	Melum E	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151127	Genome-wide association analysis in primary sclerosing cholangitis identifies two non-HLA susceptibility loci.	Primary sclerosing cholangitis	715 European ancestry cases, 2,962 European ancestry controls	1,025 European ancestry cases, 2,174 European ancestry controls	3p21.31	3	49684099	MST1	MST1			4485			rs3197999-?	rs3197999	0	3197999	missense	0	0.28	1E-16	16		   1.39	[1.24-1.56] 	Affymetrix [2,466,182] (imputed)	N
01/15/2011	21151127	Melum E	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151127	Genome-wide association analysis in primary sclerosing cholangitis identifies two non-HLA susceptibility loci.	Primary sclerosing cholangitis	715 European ancestry cases, 2,962 European ancestry controls	1,025 European ancestry cases, 2,174 European ancestry controls	2q13	2	111231795	BCL2L11	BCL2L11 - RPS14P4	10018	100132382		       63.35	       63.76	rs6720394-?	rs6720394	0	6720394	Intergenic	1	0.11	4E-8	7.397940008672037		   1.29	[1.10-1.51] 	Affymetrix [2,466,182] (imputed)	N
01/18/2011	21151130	Painter JN	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151130	Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls	2,392 European ancestry cases, 2,271 European ancestry controls	1p31.1	1	79777316	Intergenic	ADH5P2 - HMGB1P18	343296	646526		      254.85	      506.04	rs12024204-G	rs12024204	0	12024204	Intergenic	1	0.52	6E-6	5.221848749616356		   1.22	[1.07-1.18] 	Illumina [504,723]	N
01/18/2011	21151130	Painter JN	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151130	Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls	2,392 European ancestry cases, 2,271 European ancestry controls	7p15.2	7	25862019	Intergenic	UBA52P1 - MIR148A	7312	406940		      171.95	       87.90	rs12700667-A	rs12700667	0	12700667	Intergenic	1	0.74	1E-9	8.999999999999998		   1.20	[1.13-1.27] 	Illumina [504,723]	N
01/18/2011	21151130	Painter JN	12/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21151130	Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls	2,392 European ancestry cases, 2,271 European ancestry controls	8p23.1	8	6971563	Intergenic	DEFA10P - DEFA1	449493	1667		        2.45	        6.09	rs2738113-G	rs2738113	0	2738113	Intergenic	1	0.44	3E-7	6.522878745280337		   1.15	[1.09-1.22] 	Illumina [504,723]	N
01/14/2011	21087763	Carrasquillo MM	12/10/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21087763	Genome-wide screen identifies rs646776 near sortilin as a regulator of progranulin levels in human plasma.	Progranulin levels	518 European ancestry controls	459 European ancestry controls	1p13.3	1	109275908	SORT1,CELSR2,PSRC1	CELSR2			1952			rs646776-G	rs646776	0	646776	nearGene-3	0	0.21	2E-30	29.69897000433602		    .18	[0.16-0.20] ng/ml decrease	Illumina [313,504]	N
01/15/2011	21149283	Oexle K	12/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21149283	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	6p22.2	6	25842723	HFE	SLC17A1 - SLC17A3	6568	10786		       10.66	        2.38	rs1408272-T	rs1408272	0	1408272	Intergenic	1	NR	9E-9	8.045757490560675	(sTfR)	    .04	[0.03-0.05] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/15/2011	21149283	Oexle K	12/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21149283	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	11q23.3	11	117220893	PCSK7	PCSK7			9159			rs236918-C	rs236918	0	236918	intron	0	NR	1E-27	27	(sTfR)	    .04	[0.03-0.05] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/15/2011	21149283	Oexle K	12/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21149283	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-A	rs855791	0	855791	missense	0	NR	2E-15	14.69897000433602	(sTfR)	    .02	[0.015-0.023] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/15/2011	21149283	Oexle K	12/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21149283	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	6p22.2	6	25821542	HFE	SLC17A1			6568			rs17342717-T	rs17342717	0	17342717	intron	0	NR	9E-10	9.045757490560675	(ferritin)	    .09	[0.06-0.12] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/15/2011	21149283	Oexle K	12/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21149283	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	11q23.3	11	116851325	APOA	SIK3			23387			rs10047462-T	rs10047462	0	10047462	intron	0	NR	4E-25	24.39794000867203	(sTfR)	    .04	[0.03-0.05] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/10/2011	21149285	Ozeki T	12/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21149285	Genome-wide association study identifies HLA-A*3101 allele as a genetic risk factor for carbamazepine-induced cutaneous adverse drug reactions in Japanese population.	Adverse response to carbamapezine	53 Japanese ancestry cases, 881 Japanese ancestry controls	23 Japanese ancestry cases, 44 Japanese ancestry controls	6p21.33			HLA-A	 - 						HLA-A*3101	NR					0.13	1E-16			   9.50	[5.6-16.3] 	Illumina [444,823]	N
01/11/2011	21150878	Ferreira MA	12/08/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21150878	Association between ORMDL3, IL1RL1 and a deletion on chromosome 17q21 with asthma risk in Australia.	Asthma	986 European ancestry cases, 1,846 European ancestry controls	391 European ancestry cases, 213 European ancestry controls	17q12	17	39938921	ORMDL3	LOC101928947			101928947			rs6503525-C	rs6503525	0	6503525	intron	0	0.43	5E-7	6.30102999566398		   1.33	[NR] 	Illumina [~2.38 million] (imputed)	N
01/15/2011	21150874	McDonough CW	12/08/2010	Kidney Int	http://www.ncbi.nlm.nih.gov/pubmed/21150874	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	6q23.2	6	132825657	RPS12	SNORA33 - HMGB1P13	594839	100129706		        8.31	       42.57	rs7769051-A	rs7769051	0	7769051	Intergenic	1	0.29	2E-6	5.698970004336018		   1.28	[1.16-1.42] 	Affymetrix [832,357]	N
01/15/2011	21150874	McDonough CW	12/08/2010	Kidney Int	http://www.ncbi.nlm.nih.gov/pubmed/21150874	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	6q24.3	6	148383818	SASH1	SASH1			23328			rs6930576-A	rs6930576	0	6930576	intron	0	0.28	7E-7	6.154901959985743		   1.31	[1.18-1.45] 	Affymetrix [832,357]	N
01/15/2011	21150874	McDonough CW	12/08/2010	Kidney Int	http://www.ncbi.nlm.nih.gov/pubmed/21150874	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	9q22.31	9	91213189	AUH	SYK - AUH	6850	549		      314.63	         .63	rs773506-G	rs773506	0	773506	Intergenic	1	0.77	6E-6	5.221848749616356		   1.32	[1.18-1.49] 	Affymetrix [832,357]	N
01/15/2011	21150874	McDonough CW	12/08/2010	Kidney Int	http://www.ncbi.nlm.nih.gov/pubmed/21150874	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	12q14.3	12	65723778	MSRB3, HMGA2	PCNPP3 - RPSAP52	729298	204010		       77.30	       34.24	rs2358944-G	rs2358944	0	2358944	Intergenic	1	0.77	4E-6	5.397940008672037		   1.33	[1.18-1.49] 	Affymetrix [832,357]	N
01/15/2011	21150874	McDonough CW	12/08/2010	Kidney Int	http://www.ncbi.nlm.nih.gov/pubmed/21150874	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	22q12.2	22	31249773	LIMK2	LIMK2			3985			rs2106294-T	rs2106294	0	2106294	intron	0	0.94	4E-6	5.397940008672037		   1.75	[1.39-2.22] 	Affymetrix [832,357]	N
01/11/2011	21139019	Walsh KM	12/07/2010	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/21139019	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	20p12.1	20	16330665	KIF16B	KIF16B			55614			rs2208059-?	rs2208059	0	2208059	intron	0	NR	4E-7	6.397940008672037		   2.42	[1.72-3.42] 	Illumina [308,330]	N
01/11/2011	21139019	Walsh KM	12/07/2010	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/21139019	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	5q23.3	5	128186851	SLC12A2	SLC12A2			6558			rs10089-?	rs10089	0	10089	ncRNA	0	NR	2E-6	5.698970004336018		   2.56	[1.79-3.70] 	Illumina [308,330]	N
01/11/2011	21139019	Walsh KM	12/07/2010	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/21139019	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	3q28	3	192179429	FGF12	FGF12			2257			rs975121-?	rs975121	0	975121	intron	0	NR	7E-6	5.154901959985742		   2.17	[1.55-3.03] 	Illumina [308,330]	N
01/11/2011	21139019	Walsh KM	12/07/2010	Endocr Relat Cancer	http://www.ncbi.nlm.nih.gov/pubmed/21139019	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	6p22.3	6	20694653	CDKAL1	CDKAL1			54901			rs2206734-?	rs2206734	0	2206734	intron	0	NR	8E-6	5.096910013008055		   3.45	[2.08-5.56] 	Illumina [308,330]	N
01/15/2011	21131975	Purdue MP	12/05/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21131975	Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.	Renal cell carcinoma	3,772 European ancestry cases, 8,505 European ancestry controls	2,198 European ancestry cases, 4,918 European ancestry controls	2p21	2	46310465	EPAS1	EPAS1			2034			rs7579899-?	rs7579899	0	7579899	intron	0	0.40	2E-9	8.698970004336019		   1.15	[1.10-1.21] 	Illumina [586,069]	N
01/15/2011	21131975	Purdue MP	12/05/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21131975	Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.	Renal cell carcinoma	3,772 European ancestry cases, 8,505 European ancestry controls	2,198 European ancestry cases, 4,918 European ancestry controls	11q13.3	11	69424973	Intergenic	LOC102724265			102724265			rs7105934-?	rs7105934	0	7105934	nearGene-5	0	0.93	8E-14	13.09691001300805		   1.45	[1.32-1.61] 	Illumina [586,069]	N
01/15/2011	21131975	Purdue MP	12/05/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21131975	Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.	Renal cell carcinoma	3,772 European ancestry cases, 8,505 European ancestry controls	2,198 European ancestry cases, 4,918 European ancestry controls	12q24.31	12	124836304	SCARB1	SCARB1			949			rs4765623-?	rs4765623	0	4765623	intron	0	0.34	3E-8	7.522878745280337		   1.15	[1.09-1.20] 	Illumina [586,069]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	10q25.3	10	115753077	ATRNL1	ATRNL1			26033			rs10490919-T	rs10490919	0	10490919	intron	0	0.46	2E-6	5.698970004336018	(digit symbol)	    .12	[0.06-0.18] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	15q26.2	15	95789632	AC015574.1	LINC00924 - NR2F2-AS1	145820	644192		      281.79	      476.75	rs2567426-A	rs2567426	0	2567426	Intergenic	1	0.33	3E-6	5.522878745280337	(digit symbol)	    .13	[0.07-0.19] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	21q22.11	21	30843934	KRTARP7-1	KRTAP7-1 - KRTAP11-1	337878	337880		       14.20	       36.71	rs7283316-A	rs7283316	0	7283316	Intergenic	1	0.38	9E-6	5.045757490560675	(digit symbol)	    .37	[0.21-0.53] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	7p14.2	7	35361837	AC007652.1	LOC401324			401324			rs2392362-T	rs2392362	0	2392362	intron	0	0.27	2E-6	5.698970004336018	(inspection time)	    .14	[0.08-0.20] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	15q26.1	15	90571144	CRTC3	CRTC3			64784			rs12915189-A	rs12915189	0	12915189	intron	0	0.29	3E-6	5.522878745280337	(inspection time)	    .14	[0.08-0.20] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	17q25.1	17	74272069	DNAI2	TTYH2 - DNAI2	94015	64446		       10.05	        2.18	rs7219585-A	rs7219585	0	7219585	Intergenic	1	0.13	1E-6	5.999999999999999	(inspection time)	    .20	[0.12-0.28] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	20p12.2	20	10869816	RP4-697P8.2	MIR6870 - FAT1P1	102465525	170513		      220.12	       18.77	rs1884136-T	rs1884136	0	1884136	Intergenic	1	0.09	9E-6	5.045757490560675	(inspection time)	    .20	[0.10-0.30] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	2q31.1	2	175790010	EXTL2P1	RPS15AP14 - EXTL2P1	100127924	100287682		      605.36	       52.89	rs7566934-A	rs7566934	0	7566934	Intergenic	1	0.29	7E-6	5.154901959985742	(simple RT)	    .13	[0.07-0.19] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	3p22.1	3	39967143	MYRIP	MYRIP			25924			rs9985399-T	rs9985399	0	9985399	intron	0	0.05	9E-6	5.045757490560675	(simple RT)	    .26	[0.14-0.38] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	9q31.3	9	109091966	C9orf5	TMEM245			23731			rs523340-A	rs523340	0	523340	intron	0	0.10	2E-6	5.698970004336018	(simple RT)	    .21	[0.13-0.29] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	12p13.2	12	11495484	AC007450.3	HIGD1AP8 - IQSEC3P2	100874451	100130073		       13.82	        4.99	rs2908835-T	rs2908835	0	2908835	Intergenic	1	0.23	7E-6	5.154901959985742	(simple RT)	    .14	[0.08-0.20] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	16q12.2	16	55211125	AC109462.1	IRX5 - IRX6	10265	79190		      276.64	      113.37	rs17291845-A	rs17291845	0	17291845	Intergenic	1	0.13	5E-6	5.301029995663981	(simple RT)	    .19	[0.11-0.27] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	6p22.3	6	24106865	NRSN1	HNRNPA1P58 - NRSN1	100289286	140767		      104.44	       19.32	rs6922632-A	rs6922632	0	6922632	Intergenic	1	0.10	4E-6	5.397940008672037	(2-choice RT)	    .19	[0.11-0.27] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	6p22.3	6	24234705	DCDC2	DCDC2			51473			rs793834-A	rs793834	0	793834	intron	0	0.18	3E-6	5.522878745280337	(2-choice RT)	    .15	[0.09-0.21] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	8q21.13	8	83078996	Intergenic	HNRNPA1P4 - RALYL	389674	138046		      786.61	     1104.22	rs1375785-A	rs1375785	0	1375785	Intergenic	1	0.08	8E-6	5.096910013008055	(2-choice RT)	    .20	[0.10-0.30] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	11q22.1	11	97703984	AP005434.1	RNA5SP347 - CNTN5	100873609	53942		       46.40	     1316.99	rs11212364-A	rs11212364	0	11212364	Intergenic	1	0.03	3E-6	5.522878745280337	(2-choice RT)	    .26	[0.16-0.36] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	14q31.3	14	88360338	SPATA7	KCNK10 - SPATA7	54207	55812		       33.43	       25.31	rs17124581-T	rs17124581	0	17124581	Intergenic	1	0.06	3E-6	5.522878745280337	(2-choice RT)	    .27	[0.15-0.39] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	20p12.3	20	5859893	C20orf196	C20orf196			149840			rs4815868-A	rs4815868	0	4815868	intron	0	0.19	8E-6	5.096910013008055	(2-choice RT)	    .16	[0.08-0.24] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	2p25.3	2	38938	FAM110C	FAM110C			642273			rs11542478-A	rs11542478	0	11542478	UTR-3	0	0.10	9E-6	5.045757490560675	(4-choice RT)	    .19	[0.11-0.27] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	7q11.22	7	67961336	RP11-358M3.1	STAG3L4 - MTND4P3	64940	100873189		      639.81	      304.98	rs6961611-T	rs6961611	0	6961611	Intergenic	1	0.02	7E-6	5.154901959985742	(4-choice RT)	    .63	[0.36-0.90] unit decrease	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	8q21.11	8	75235719	AC022274.1	CASC9			101805492			rs16939046-T	rs16939046	0	16939046	intron	0	0.09	4E-6	5.397940008672037	(4-choice RT)	    .22	[0.12-0.32] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	17q25.1	17	75063978	KCTD2	KCTD2			23510			rs11077773-T	rs11077773	0	11077773	ncRNA	0	0.06	8E-6	5.096910013008055	(4-choice RT)	    .24	[0.14-0.34] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	5q35.2	5	174221435	CTC-430J12.2	HMP19 - GAPDHP71	51617	2613		      112.26	      291.80	rs10475598-T	rs10475598	0	10475598	Intergenic	1	0.32	8E-7	6.096910013008056	(speed factor)	    .15	[0.09-0.21] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	20p13	20	371300	TRIB3	NRSN2 - TRIB3	80023	57761		       16.43	        9.36	rs6051520-T	rs6051520	0	6051520	Intergenic	1	0.21	2E-7	6.698970004336019	(speed factor)	    .18	[0.12-0.24] unit increase	Illumina [~610,000]	N
01/14/2011	21130836	Luciano M	12/03/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/21130836	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	21q22.3	21	43028608	PKNOX1	PKNOX1			5316			rs2839627-T	rs2839627	0	2839627	intron	0	0.11	6E-6	5.221848749616356	(speed factor)	    .27	[0.15-0.39] unit increase	Illumina [~610,000]	N
01/12/2011	21131588	Slager SL	12/03/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/21131588	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	16q24.1	16	85910833	IRF8	IRF8			3394			rs391525-?	rs391525	0	391525	intron	0	0.66	3E-9	8.522878745280337		   1.56	[1.35-1.82] 	Affymetrix [827,777]	N
01/12/2011	21131588	Slager SL	12/03/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/21131588	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	6	32610305	HLA-DRB5	TRNAI25			100189401			rs674313-T	rs674313	0	674313		0	0.26	7E-9	8.154901959985743		   1.69	[1.41-2.01] 	Affymetrix [827,777]	N
01/12/2011	21131588	Slager SL	12/03/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/21131588	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p21.32	6	32638979	HLA-DQA1	HLA-DQA1			3117			rs9272535-A	rs9272535	0	9272535	intron	0	0.27	9E-8	7.045757490560674		   1.61	[1.35-1.92] 	Affymetrix [827,777]	N
01/12/2011	21131588	Slager SL	12/03/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/21131588	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	6p25.3	6	417727	NR	IRF4 - EXOC2	3662	55770		        6.28	       67.41	rs9378805-C	rs9378805	0	9378805	Intergenic	1	0.49	2E-6	5.698970004336018		   1.38	[1.20-1.58] 	Affymetrix [827,777]	N
01/10/2011	21105107	Clifford RJ	12/01/2010	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/21105107	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls, 	3p22.3	3	32978543	GLB1	CCR4 - GLB1	1233	2720		       23.63	       18.07	rs4678680-?	rs4678680	0	4678680	Intergenic	1	0.07	2E-7	6.698970004336019		   2.27	[1.68-3.08] 	Affymetrix [658,897]	N
01/10/2011	21105107	Clifford RJ	12/01/2010	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/21105107	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls, 	6p21.33	6	31915902	C2	C2			717			rs9267673-?	rs9267673	0	9267673	intron	0	0.08	2E-6	5.698970004336018		   1.97	[1.47-2.64] 	Affymetrix [658,897]	N
01/10/2011	21105107	Clifford RJ	12/01/2010	Hepatology	http://www.ncbi.nlm.nih.gov/pubmed/21105107	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls, 	14q32.11	14	89834691	C14orf143	EFCAB11			90141			rs12100561-?	rs12100561	0	12100561	intron	0	0.39	4E-6	5.397940008672037		   1.52	[1.26-1.83] 	Affymetrix [658,897]	N
01/12/2011	21123754	Kim S	12/01/2010	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/21123754	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	2q23.1	2	148800291	EPC2	EPC2 - UBBP3	26122	23667		       11.80	       63.14	rs2121433-?	rs2121433	0	2121433	Intergenic	1	NR	1E-6	5.999999999999999	(t-tau)	NR	NR	Illumina [322,557]	N
01/12/2011	21123754	Kim S	12/01/2010	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/21123754	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	19	44892009	TOMM40	TOMM40			10452			rs157580-?	rs157580	0	157580	intron	0	NR	1E-6	5.999999999999999	(AB1-42)	NR	NR	Illumina [322,557]	N
01/12/2011	21123754	Kim S	12/01/2010	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/21123754	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	19	44908684	APOE	APOE			348			rs429358-?	rs429358	0	429358	missense	0	NR	1E-6	5.999999999999999	(AB1-42, p-tau181p, p-tau181p/AB1-42, t-tau/AB1-42)	NR	NR	Illumina [322,557]	N
01/12/2011	21123754	Kim S	12/01/2010	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/21123754	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	19	44911194	LOC100129500	APOE - APOC1	348	341		        1.80	        3.13	rs439401-?	rs439401	0	439401	Intergenic	1	NR	1E-6	5.999999999999999	(AB1-42)	NR	NR	Illumina [322,557]	N
01/12/2011	21123754	Kim S	12/01/2010	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/21123754	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	22q13.2	22	41822852	CCDC134	CCDC134			79879			rs7364180-?	rs7364180	0	7364180	intron	0	NR	1E-6	5.999999999999999	(AB1-42)	NR	NR	Illumina [322,557]	N
01/12/2011	21123754	Kim S	12/01/2010	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/21123754	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	2q23.1	2	148810827	EPC2	EPC2 - UBBP3	26122	23667		       22.34	       52.60	rs4499362-?	rs4499362	0	4499362	Intergenic	1	NR	1E-6	5.999999999999999	(t-tau/AB1-42)	NR	NR	Illumina [322,557]	N
01/12/2011	21123754	Kim S	12/01/2010	Neurology	http://www.ncbi.nlm.nih.gov/pubmed/21123754	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	19	44892362	TOMM40	TOMM40			10452			rs2075650-?	rs2075650	0	2075650	intron	0	NR	1E-6	5.999999999999999	(p-tau181p/AB1-42, t-tau/AB1-42)	NR	NR	Illumina [322,557]	N
07/01/2014	21130132	Mick E	12/01/2010	Prog Neuropsychopharmacol Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21130132	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	2p11.2	2	86133450	PTCD3	PTCD3			55037			rs2241437-C	rs2241437	0	2241437	intron	0	0.016	3E-6	5.522878745280337		NR	NR	Affymetrix [316,934]	N
07/01/2014	21130132	Mick E	12/01/2010	Prog Neuropsychopharmacol Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21130132	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	3q13.31	3	116726477	Intergenic	TUSC7 - MIR4447	285194	100616485		        9.44	      123.80	rs1432364-T	rs1432364	0	1432364	Intergenic	1	0.422	4E-6	5.397940008672037		NR	NR	Affymetrix [316,934]	N
07/01/2014	21130132	Mick E	12/01/2010	Prog Neuropsychopharmacol Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21130132	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	3q27.3	3	186966576	ST6GAL1	ST6GAL1			6480			rs6778436-A	rs6778436	0	6778436	intron	0	0.007	5E-6	5.301029995663981		NR	NR	Affymetrix [316,934]	N
07/01/2014	21130132	Mick E	12/01/2010	Prog Neuropsychopharmacol Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21130132	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	5q14.1	5	81207084	RASGRF2	RASGRF2			5924			rs17228156-C	rs17228156	0	17228156	intron	0	0.094	8E-6	5.096910013008055		NR	NR	Affymetrix [316,934]	N
07/01/2014	21130132	Mick E	12/01/2010	Prog Neuropsychopharmacol Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21130132	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	11q13.1	11	63899472	MARK2	MARK2			2011			rs12099085-A	rs12099085	0	12099085	intron	0	0.007	5E-6	5.301029995663981		NR	NR	Affymetrix [316,934]	N
07/01/2014	21130132	Mick E	12/01/2010	Prog Neuropsychopharmacol Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21130132	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	13q33.1	13	102196915	FGF14	FGF14			2259			rs544434-C	rs544434	0	544434	intron	0	0.014	6E-6	5.221848749616356		NR	NR	Affymetrix [316,934]	N
07/01/2014	21130132	Mick E	12/01/2010	Prog Neuropsychopharmacol Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21130132	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	15q21.1	15	46277268	Intergenic	SQRDL - SEMA6D	58472	80031		      585.97	      906.94	rs6493206-T	rs6493206	0	6493206	Intergenic	1	0.011	4E-6	5.397940008672037		NR	NR	Affymetrix [316,934]	N
01/09/2011	21182207	Salyakina D	12/01/2010	Autism Res	http://www.ncbi.nlm.nih.gov/pubmed/21182207	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	3p14.2	3	60304113	FHIT	FHIT			2272			rs10510837-?	rs10510837	0	10510837	intron	0	0.12	4E-6	5.397940008672037		NR	NR	Illumina [439,282] (imputed)	N
01/09/2011	21182207	Salyakina D	12/01/2010	Autism Res	http://www.ncbi.nlm.nih.gov/pubmed/21182207	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	5q15	5	98553032	RGMB	MRPS35P2 - CTBP2P4	359778	642909		      150.31	       23.31	rs4703129-?	rs4703129	0	4703129	Intergenic	1	0.41	1E-6	5.999999999999999		NR	NR	Illumina [439,282] (imputed)	N
01/09/2011	21182207	Salyakina D	12/01/2010	Autism Res	http://www.ncbi.nlm.nih.gov/pubmed/21182207	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	11q25	11	131450176	NTM	NTM			50863			rs1550976-?	rs1550976	0	1550976	intron	0	0.33	2E-6	5.698970004336018		NR	NR	Illumina [439,282] (imputed)	N
01/09/2011	21182207	Salyakina D	12/01/2010	Autism Res	http://www.ncbi.nlm.nih.gov/pubmed/21182207	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	15q22.1	15	58882340	SLTM, RNF111	SLTM			79811			rs7179456-?	rs7179456	0	7179456	intron	0	0.39	7E-6	5.154901959985742		NR	NR	Illumina [439,282] (imputed)	N
01/09/2011	21182207	Salyakina D	12/01/2010	Autism Res	http://www.ncbi.nlm.nih.gov/pubmed/21182207	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	19q13.2	19	38422124	ODF3L2	RASGRP4			115727			rs892055-?	rs892055	0	892055	missense	0	0.33	5E-6	5.301029995663981		NR	NR	Illumina [439,282] (imputed)	N
01/11/2011	21124317	Wang K	12/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21124317	Integrative genomics identifies LMO1 as a neuroblastoma oncogene.	Neuroblastoma	1,627 European ancestry child cases, 3,254 European ancestry child controls	624 European ancestry child cases, 2,843 European ancestry child controls	11p15.4	11	8231306	LMO1	LMO1			4004			rs110419-A	rs110419	0	110419	intron	0	0.49	5E-16	15.30102999566398		   1.34	[1.25-1.44] 	Illumina [480,279]	N
01/11/2011	21124317	Wang K	12/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21124317	Integrative genomics identifies LMO1 as a neuroblastoma oncogene.	Neuroblastoma	1,627 European ancestry child cases, 3,254 European ancestry child controls	624 European ancestry child cases, 2,843 European ancestry child controls	6p22.3	6	22125735	FLJ22536, FLJ44180	CASC15			401237			rs4712653-C	rs4712653	0	4712653	intron	0	0.46	8E-17	16.09691001300806		   1.40	[NR] 	Illumina [480,279]	N
01/11/2011	21124317	Wang K	12/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/21124317	Integrative genomics identifies LMO1 as a neuroblastoma oncogene.	Neuroblastoma	1,627 European ancestry child cases, 3,254 European ancestry child controls	624 European ancestry child cases, 2,843 European ancestry child controls	2q35	2	214771070	BARD1	BARD1			580			rs3768716-C	rs3768716	0	3768716	intron	0	0.23	5E-13	12.30102999566398		   1.39	[NR] 	Illumina [480,279]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	3p22.3	3	35101019	ARPP-21	LOC101928135			101928135			rs11129640-?	rs11129640	0	11129640	intron	0	NR	6E-8	7.221848749616355		    .12	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	12p12.1	12	21998639	CMAS	ABCC9 - THEM4P1	10060	677880		       56.78	       10.02	rs10743430-?	rs10743430	0	10743430	Intergenic	1	NR	6E-7	6.221848749616355		    .22	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	8p21.3	8	21804933	DOK2	GFRA2			2675			rs17581368-?	rs17581368	0	17581368	intron	0	NR	7E-6	5.154901959985742		    .09	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	18q21.2	18	50851864	ME2	RPL17P46 - ME2	100271419	4200		       27.76	       27.20	rs732528-?	rs732528	0	732528	Intergenic	1	NR	7E-6	5.154901959985742		    .11	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	11q23.2	11	113235733	NCAM1	NCAM1			4684			rs12279261-?	rs12279261	0	12279261	intron	0	NR	9E-6	5.045757490560675		    .11	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	9p21.3	9	25551359	TUSC1	IZUMO3 - TUSC1	100129669	286319		     1005.47	      125.03	rs17774966-?	rs17774966	0	17774966	Intergenic	1	NR	8E-6	5.096910013008055		    .15	[NR] unit increase (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	6p25.1	6	6283433	F13A1	F13A1			2162			rs749005-?	rs749005	0	749005	intron	0	NR	3E-7	6.522878745280337	(entorhinal cortical volume)	    .00	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	14q12	14	24802314	STXBP6	GZMB - STXBP6	3002	29091		      168.09	        7.34	rs854384-?	rs854384	0	854384	Intergenic	1	NR	1E-6	5.999999999999999	(total hippocampal volume)	    .00	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	10p12.1	10	28094004	MPP7	MPP7			143098			rs927675-?	rs927675	0	927675	intron	0	NR	2E-6	5.698970004336018	(total hippocampal volume)	    .00	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	13q12.3	13	30539242	HMGB1	HMGB1 - RBM22P2	3146	100271871		       73.30	         .06	rs11618202-?	rs11618202	0	11618202	Intergenic	1	NR	7E-6	5.154901959985742	(total hippocampal volume)	    .00	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	11q22.2	11	102284743	YAP1, BIRC3	YAP1 - RPS6P17	10413	120318		       51.32	       10.28	rs2852894-?	rs2852894	0	2852894	Intergenic	1	NR	1E-6	5.999999999999999	(whole-brain volume)	    .02	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	1p31.1	1	75448141	SLC44A5	SLC44A5			204962			rs1857353-?	rs1857353	0	1857353	intron	0	NR	2E-6	5.698970004336018	(Whole-brain volume)	    .02	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	3q22.3	3	138306554	TXNDC6	NME9			347736			rs9846480-?	rs9846480	0	9846480	intron	0	NR	8E-6	5.096910013008055	(whole-brain volume)	    .01	[NR] unit increase (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	9q31.1	9	104894789	ABCA1	ABCA1			19			rs3905000-?	rs3905000	0	3905000	intron	0	NR	9E-6	5.045757490560675	(whole-brain volume)	    .01	[NR] unit increase (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	6q14.3	6	87157345	ZNF292	ZNF292			23036			rs1925690-?	rs1925690	0	1925690	intron	0	NR	3E-8	7.522878745280337	(entorhinal cortical volume)	    .00	[NR] unit increase (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	10p13	10	17100527	CUBN	CUBN			8029			rs6602175-?	rs6602175	0	6602175	intron	0	NR	3E-6	5.522878745280337	(whole-brain volume)	    .01	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	3q21.3	3	127274256	PLXNA1	C3orf56 - TPRA1	285311	131601		       76.07	      298.81	rs9871760-?	rs9871760	0	9871760	Intergenic	1	NR	4E-6	5.397940008672037	(whole-brain volume)	    .01	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	8q12.3	8	61496869	RLBP1L1	CLVS1			157807			rs903027-?	rs903027	0	903027	intron	0	NR	6E-6	5.221848749616356	(whole-brain volume)	    .01	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	MRI atrophy measures	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	7p15.3	7	21703356	DNAH11	DNAH11			8701			rs368331-?	rs368331	0	368331	intron	0	NR	4E-6	5.397940008672037	(whole-brain volume)	    .02	[NR] unit decrease (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	1q24.2	1	169639679	SELP	SELP - SELL	6403	6402		        9.54	       50.99	rs1569476-?	rs1569476	0	1569476	Intergenic	1	NR	3E-7	6.522878745280337		    .00	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	1q31.3	1	195945143	KCNT2	EEF1A1P14 - KCNT2	647167	343450		     1754.60	      280.64	rs7517337-?	rs7517337	0	7517337	Intergenic	1	NR	2E-6	5.698970004336018		    .00	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	3p26.3	3	1798009	CNTN4	RPL23AP39 - RPL21P17	100271461	727810		       67.54	      107.64	rs10510217-?	rs10510217	0	10510217	Intergenic	1	NR	3E-6	5.522878745280337		    .00	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	12p13.1	12	13911527	GRIN2B	GRIN2B			2904			rs4764039-?	rs4764039	0	4764039	intron	0	NR	3E-6	5.522878745280337		    .00	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	1q24.1	1	165647351	MGST3	MGST3			4259			rs6686643-?	rs6686643	0	6686643	intron	0	NR	7E-6	5.154901959985742		    .00	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	6p21.1	6	41336067	NCR2	NCR2			9436			rs9471576-?	rs9471576	0	9471576	intron	0	NR	2E-6	5.698970004336018		    .01	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	7p15.3	7	21703356	DNAH11	DNAH11			8701			rs368331-?	rs368331	0	368331	intron	0	NR	2E-6	5.698970004336018		    .01	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	14q22.1	14	51453104	FRMD6	SETP2 - FRMD6-AS2	326277	100874185		       13.79	        1.41	rs7153703-?	rs7153703	0	7153703	Intergenic	1	NR	3E-6	5.522878745280337		    .01	[NR] unit increase (main effect)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	2p22.2	2	37713399	CDC42EP3	CDC42EP3 - LINC00211	10602	101929559		       40.86	      112.85	rs4670766-?	rs4670766	0	4670766	Intergenic	1	NR	2E-6	5.698970004336018		    .01	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	8q24.22	8	130799787	ADCY8	ADCY8			114			rs263238-?	rs263238	0	263238	intron	0	NR	2E-6	5.698970004336018		    .01	[NR] unit increase (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	15q22.2	15	60618351	RORA	RORA			6095			rs3784609-?	rs3784609	0	3784609	intron	0	NR	3E-6	5.522878745280337		    .00	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	9q21.13	9	75661759	PCSK5	OSTF1 - OTX2P1	26578	100033409		      513.62	       62.41	rs10512049-?	rs10512049	0	10512049	Intergenic	1	NR	3E-6	5.522878745280337		    .01	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	3q29	3	196826996	PAK2	PAK2			5062			rs2084385-?	rs2084385	0	2084385	intron	0	NR	5E-6	5.301029995663981		    .01	[NR] unit increase (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	13q13.1	13	32813108	PDS5B	LINC00423			100874167			rs990324-?	rs990324	0	990324	intron	0	NR	5E-6	5.301029995663981		    .01	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	9p21.2	9	27630564	LOC392298	CTAGE12P - LINGO2	392298	158038		       19.60	      317.52	rs12555345-?	rs12555345	0	12555345	Intergenic	1	NR	5E-6	5.301029995663981		    .00	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	13q22.3	13	78234779	EDNRB, POU4F1	RNF219-AS1			100874222			rs9574199-?	rs9574199	0	9574199	intron	0	NR	7E-6	5.154901959985742		    .00	[NR] unit increase (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	13q32.2	13	98308508	FARP1	FARP1			10160			rs4318070-?	rs4318070	0	4318070	intron	0	NR	7E-6	5.154901959985742		    .00	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	3q28	3	191283019	UTS2D	UTS2B			257313			rs10937470-?	rs10937470	0	10937470	intron	0	NR	9E-6	5.045757490560675		    .00	[NR] unit decrease (interaction)	Illumina [488,911]	N
01/12/2011	21116278	Furney SJ	11/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21116278	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	Up to 434 European ancestry MCI cases, 245 European ancestry AD cases, 284 European ancestry controls	NA	7p12.2	7	50185795	ZPBP	C7orf72 - IKZF1	100130988	10320		       26.54	      118.99	rs7805803-?	rs7805803	0	7805803	Intergenic	1	NR	9E-6	5.045757490560675		    .00	[NR] unit decrease (interaction)	Illumina [488,911]	N
12/09/2010	21118971	Wu C	11/30/2010	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/21118971	Genome-wide interrogation identifies YAP1 variants associated with survival of small-cell lung cancer patients.	Small-cell lung cancer (survival)	245 Han Chinese ancestry cases	305 Han Chinese ancestry cases	11q22.3	11	103547430	DYNC2H1	MTND1P36 - MIR4693	100506721	100616457		      139.05	      302.48	rs716274-G	rs716274	0	716274	Intergenic	1	NR	9E-8	7.045757490560674		   1.83	[1.47-2.29] (AG)	Affymetrix [265,996]	N
01/08/2011	21113153	van der Zanden LF	11/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21113153	Common variants in DGKK are strongly associated with risk of hypospadias.	Hypospadias	436 European ancestry cases, 494 European ancestry controls	133 European ancestry cases and their parents, 266 European ancestry cases, 402 European ancestry controls	Xp11.22	23	50439186	DGKK	DGKK			139189			rs1934179-A	rs1934179	0	1934179	intron	0	0.33	3E-21	20.52287874528034		   2.60	[2.1-3.1] 	Affymetrix [574,400] (pooled)	N
01/08/2011	21107343	Aoki A	11/25/2010	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21107343	SNPs on chromosome 5p15.3 associated with myocardial infarction in Japanese population.	Myocardial infarction	194 Japanese ancestry cases, 1,539 Japanese ancestry controls	5,177 Japanese ancestry cases, 6,220 Japanese ancestry controls	5p15.33	5	4029676	Intergenic	IRX1 - LINC01020	79192	340094		      428.27	     1004.68	rs11748327-?	rs11748327	0	11748327	Intergenic	1	NR	5E-13	12.30102999566398		   1.25	[1.18-1.33] 	Perlegen [210,785]	N
01/08/2011	21098978	Sherva R	11/25/2010	J Alzheimers Dis	http://www.ncbi.nlm.nih.gov/pubmed/21098978	Identification of novel candidate genes for Alzheimer's disease by autozygosity mapping using genome wide SNP data.	Alzheimer's disease	124 Isreali Arab cases, 142 Israeli Arab controls	1,930 European ancestry cases, 1,312 European ancestry controls, 931 European ancestry and Ashkenazi Jewish cases, 1,104 European ancestry and Ashkenazi Jewish controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~300,000]	N
01/12/2011	21106707	Gu J	11/24/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21106707	A genetic variant near the PMAIP1/Noxa gene is associated with increased bleomycin sensitivity.	Bleomycin sensitivity	673 European ancestry individuals	834 European ancestry individuals	18q21.32	18	59836146	PMAIP, Noxa	GLUD1P4 - PMAIP1	2750	5366		       55.54	       63.81	rs8093763-A	rs8093763	0	8093763	Intergenic	1	0.25	3E-8	7.522878745280337		    .18	[0.12-0.24] more chromatid breaks	Illumina [539,437]	N
01/12/2011	21106707	Gu J	11/24/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21106707	A genetic variant near the PMAIP1/Noxa gene is associated with increased bleomycin sensitivity.	Bleomycin sensitivity	673 European ancestry individuals	834 European ancestry individuals	2q14.3	2	128721268	NR	ISCA1P6 - RPL22P7	100130549	100129819		      202.01	     1218.58	rs4662834-A	rs4662834	0	4662834	Intergenic	1	0.41	5E-6	5.301029995663981		    .08	[0.04-0.11] fewer chromatid breaks	Illumina [539,437]	N
01/12/2011	21106707	Gu J	11/24/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21106707	A genetic variant near the PMAIP1/Noxa gene is associated with increased bleomycin sensitivity.	Bleomycin sensitivity	673 European ancestry individuals	834 European ancestry individuals	4q12	4	56955143	C4orf14, REST	REST - NOA1	5978	84273		       19.30	        8.21	rs708547-A	rs708547	0	708547	Intergenic	1	0.24	9E-7	6.045757490560675		    .18	[0.11-0.24] fewer chromatid breaks	Illumina [539,437]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment	738 European ancestry, African-American, and other ancestry cases	NA	11p13	11	34633816	EHF	EHF			26298			rs286913-?	rs286913	0	286913	intron	0	0.05	7E-8	7.154901959985742	(Ziprasidone, vigilance)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment	738 European ancestry, African-American, and other ancestry cases	NA	1q32.1	1	205927107	SLC26A9	SLC26A9			115019			rs11240594-?	rs11240594	0	11240594	intron	0	0.19	1E-7	7	(Olanzapine, processing speed)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	11p12	11	40816163	Intergenic	LRRC4C			57689			rs4611189-?	rs4611189	0	4611189	intron	0	0.03	6E-7	6.221848749616355	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	12q13.13	12	51870172	ANKRD33	FIGNL2 - ANKRD33	401720	341405		       21.59	       17.84	rs17126180-?	rs17126180	0	17126180	Intergenic	1	0.06	9E-7	6.045757490560675	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	14q24.2	14	70783085	MAP3K9	MAP3K9			4293			rs17108533-?	rs17108533	0	17108533	intron	0	0.10	1E-6	5.999999999999999	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	21q22.11	21	31912988	HUNK	HUNK			30811			rs2833556-?	rs2833556	0	2833556	intron	0	0.31	5E-7	6.30102999566398	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	3p22.1	3	42406979	LYZL4	LYZL4			131375			rs2286720-?	rs2286720	0	2286720	cds-synon	0	0.07	1E-6	5.999999999999999	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	16q23.1	16	78536060	WWOX	WWOX			51741			rs17706989-?	rs17706989	0	17706989	intron	0	0.03	1E-6	5.999999999999999	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	8q22.3	8	101215695	ZNF706	ZNF706 - DUXAP2	51123	503631		        9.63	      150.64	rs1264202-?	rs1264202	0	1264202	Intergenic	1	0.31	2E-6	5.698970004336018	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	1p36.33	1	2138242	PRKCZ	PRKCZ			5590			rs3753242-?	rs3753242	0	3753242	intron	0	0.06	1E-6	5.999999999999999	(risperidone)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	16q22.1	16	68566448	ZFP90	ZFP90			146198			rs17689437-?	rs17689437	0	17689437	intron	0	0.13	1E-6	5.999999999999999	(risperidone)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African-American, and other ancestry cases	NA	2q36.3	2	229105082	PID1	PID1			55022			rs6436839-?	rs6436839	0	6436839	intron	0	0.29	3E-6	5.522878745280337	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	1q42.3	1	236149827	GPR137B	GPR137B			7107			rs7520258-?	rs7520258	0	7520258	intron	0	0.07	5E-7	6.30102999566398	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	11q23.2	11	113439147	DRD2	DRD2			1813			rs11214606-?	rs11214606	0	11214606	intron	0	0.03	5E-7	6.30102999566398	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	19q13.11	19	33677367	CHST8	CHST8			64377			rs4805924-?	rs4805924	0	4805924	intron	0	0.02	6E-7	6.221848749616355	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	2q13	2	112771663	IL1A	CKAP2L - IL1A	150468	3552		        6.99	        2.25	rs11677416-?	rs11677416	0	11677416	Intergenic	1	0.25	7E-7	6.154901959985743	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	12q23.1	12	99872335	ANKS1B	ANKS1B			56899			rs11110077-?	rs11110077	0	11110077	intron	0	0.11	4E-7	6.397940008672037	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	1p13.3	1	106889954	Intergenic	NDE1P1 - PRMT6	100422372	55170		       71.62	      166.69	rs12726652-?	rs12726652	0	12726652	Intergenic	1	0.26	5E-7	6.30102999566398	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	4q13.1	4	61571600	LPHN3	LPHN3			23284			rs6856328-?	rs6856328	0	6856328	intron	0	0.07	8E-7	6.096910013008056	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	6p23	6	14598589	Intergenic	LOC101928354			101928354			rs7770731-?	rs7770731	0	7770731	intron	0	0.29	1E-6	5.999999999999999	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	3q28	3	190279607	CLDN1	NMNAT1P3 - CLDN1	391603	9076		      111.98	       26.09	rs16865258-?	rs16865258	0	16865258	Intergenic	1	0.02	2E-6	5.698970004336018	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	14q22.2	14	54390568	CDKN3	ATP5C1P1 - CDKN3	645560	1033		      398.55	        6.37	rs4293296-?	rs4293296	0	4293296	Intergenic	1	0.29	3E-6	5.522878745280337	(quetiapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21107309	McClay JL	11/24/2010	Neuropsychopharmacology	http://www.ncbi.nlm.nih.gov/pubmed/21107309	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African-American, and other ancestry cases	NA	2p23.3	2	24298897	ITSN2	ITSN2			50618			rs6707600-?	rs6707600	0	6707600	intron	0	0.02	3E-6	5.522878745280337	(olanzapine)	NR	NR	Affymetrix [492,900]	N
01/08/2011	21104366	Tan L	11/23/2010	Sci China Life Sci	http://www.ncbi.nlm.nih.gov/pubmed/21104366	A genome-wide association analysis implicates SOX6 as a candidate gene for wrist bone mass.	Bone mineral density (wrist)	1,000 European ancestry individuals	1,628 Chinese ancestry individuals	11p15.2	11	15930748	SOX6	INSC - SOX6	387755	55553		      683.54	       35.70	rs11023787-T	rs11023787	0	11023787	Intergenic	1	0.04	5E-6	5.301029995663981		NR	NR	Affymetrix [379,319]	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	6q16.3	6	104931079	LIN28B	HACE1 - LINC00577	57531	100113403		       71.16	        5.22	rs7759938-C	rs7759938	0	7759938	Intergenic	1	0.32	5E-60	59.30102999566398		   6.40	[5.62-7.18] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	9q31.2	9	106204807	TMEM38B	SLC25A6P5 - MIR8081	100129319	102465995		      354.21	      396.12	rs2090409-A	rs2090409	0	2090409	Intergenic	1	0.31	2E-33	32.69897000433601		   4.70	[3.92-5.48] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	7p14.1	7	41430495	INHBA	SUGCT - INHBA	79783	3624		      569.73	      258.51	rs1079866-G	rs1079866	0	1079866	Intergenic	1	0.15	6E-14	13.22184874961636		   3.90	[2.92-4.88] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	1q23.3	1	165425645	RXRG	RXRG			6258			rs466639-T	rs466639	0	466639	intron	0	0.13	1E-13	13		   4.20	[3.02-5.38] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3q13.32	3	117855975	Intergenic	PTMAP8 - IGSF11	728873	152404		      828.94	     1044.66	rs6438424-A	rs6438424	0	6438424	Intergenic	1	0.50	1E-13	13		   2.70	[1.92-3.48] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	18q21.1	18	47225867	FUSSEL18	SKOR2			652991			rs1398217-G	rs1398217	0	1398217	intron	0	0.43	2E-13	12.69897000433602		   2.70	[1.92-3.48] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	2q33.1	2	198767841	PLCL1	PLCL1 - SATB2	5334	23314		      617.96	      501.66	rs12617311-A	rs12617311	0	12617311	Intergenic	1	0.32	6E-13	12.22184874961636		   3.00	[2.22-3.78] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	17q21.33	17	51536424	CA10	RPL7P48 - CA10	388401	56934		       33.17	       93.89	rs9635759-A	rs9635759	0	9635759	Intergenic	1	0.32	7E-13	12.15490195998574		   3.00	[2.22-3.78] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	11q24.1	11	122999975	BSX	BSX - RPL34P23	390259	100271499		       18.30	       35.89	rs6589964-A	rs6589964	0	6589964	Intergenic	1	0.48	2E-12	11.69897000433602		   2.70	[1.92-3.48] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	9q31.3	9	111531354	ZNF483	ZNF483			158399			rs10980926-A	rs10980926	0	10980926	intron	0	0.36	4E-11	10.39794000867204		   2.50	[1.72-3.28] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	2p16.1	2	56364948	CCDC85A	CCDC85A			114800			rs17268785-G	rs17268785	0	17268785	intron	0	0.17	1E-10	10		   3.20	[2.22-4.18] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	5q31.1	5	134513486	PHF15	RPS10P11 - JADE2	391833	23338		       90.40	       10.83	rs13187289-G	rs13187289	0	13187289	Intergenic	1	0.20	2E-10	9.698970004336017		   3.00	[2.02-3.98] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3p12.1	3	86867732	VGLL3	PRKRIRP2 - VGLL3	100422711	389136		      852.41	       70.24	rs7642134-A	rs7642134	0	7642134	Intergenic	1	0.38	4E-10	9.397940008672037		   2.40	[1.62-3.18] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	2q24.1	2	156240264	NR4A2	MTND5P30 - NR4A2	100873266	4929		      926.84	       84.17	rs17188434-C	rs17188434	0	17188434	Intergenic	1	0.07	1E-9	8.999999999999998		   4.50	[3.13-5.87] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3q27.2	3	185911780	TRA2B, ETV5	MIR548AQ - TRA2B	100847078	6434		      143.88	        2.79	rs2002675-G	rs2002675	0	2002675	Intergenic	1	0.42	1E-9	8.999999999999998		   2.20	[1.42-2.98] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	8q21.11	8	77181601	PXMP3	HIGD1AP18 - PKIA	100874456	5569		      167.55	     1334.50	rs7821178-A	rs7821178	0	7821178	Intergenic	1	0.34	3E-9	8.522878745280337		   2.40	[1.62-3.18] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	16p13.12	16	14294448	MKL2	TRNAT6 - MIR193B	100189086	574455		        8.48	        9.52	rs1659127-A	rs1659127	0	1659127	Intergenic	1	0.34	4E-9	8.397940008672036		   2.40	[1.62-3.18] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	19p13.11	19	18707093	CRTC1	CRTC1			23373			rs10423674-A	rs10423674	0	10423674	intron	0	0.35	6E-9	8.221848749616356		   2.30	[1.52-3.08] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	11q14.1	11	78384327	GAB2	GAB2			9846			rs10899489-A	rs10899489	0	10899489	intron	0	0.15	8E-9	8.096910013008056		   3.10	[2.12-4.08] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	14q32.2	14	100565880	BEGAIN	BEGAIN			57596			rs6575793-C	rs6575793	0	6575793	intron	0	0.42	1E-8	8		   2.30	[1.52-3.08] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	11p15.4	11	8617653	TRIM66	TRIM66			9866			rs4929923-T	rs4929923	0	4929923	UTR-3	0	0.36	1E-8	8		   2.30	[1.52-3.08] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3q22.1	3	132891908	TMEM108, NPHP3	NPHP3-AS1 - TMEM108	348808	66000		       17.70	      146.38	rs6439371-G	rs6439371	0	6439371	Intergenic	1	0.34	1E-8	8		   2.30	[1.52-3.08] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	11p15.2	11	13272358	ARNTL	RASSF10 - ARNTL	644943	406		      260.25	        5.38	rs900145-C	rs900145	0	900145	Intergenic	1	0.30	2E-8	7.698970004336018		   2.30	[1.52-3.08] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3p21.31	3	50055776	RBM6	RBM6			10180			rs6762477-G	rs6762477	0	6762477	intron	0	0.44	2E-8	7.698970004336018		   2.50	[1.72-3.28] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	2p25.3	2	614168	TMEM18	FAM150B - TMEM18	285016	129787		      325.30	       53.81	rs2947411-A	rs2947411	0	2947411	Intergenic	1	0.17	2E-8	7.698970004336018		   2.80	[1.82-3.78] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	6q22.32	6	126446454	C6orf173, TRMT11	CENPW			387103			rs1361108-T	rs1361108	0	1361108	intron	0	0.46	2E-8	7.698970004336018		   2.10	[1.32-2.88] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	16q22.1	16	69554669	NFAT5	CYB5B - MIR1538	80777	100302119		       88.41	       11.14	rs1364063-C	rs1364063	0	1364063	Intergenic	1	0.43	2E-8	7.698970004336018		   2.10	[1.32-2.88] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	1q25.2	1	177883445	SEC16B	BRINP2 - SEC16B	57795	89866		      601.02	       45.66	rs633715-C	rs633715	0	633715	Intergenic	1	0.20	2E-8	7.698970004336018		   2.60	[1.62-3.58] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	6q16.2	6	99760562	PRDM13, MCHR2	PRDM13 - MCHR2	59336	84539		      144.98	      159.35	rs4840086-G	rs4840086	0	4840086	Intergenic	1	0.42	2E-8	7.698970004336018		   2.10	[1.32-2.88] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3p21.31	3	49173299	KLHDC8B	KLHDC8B			200942			rs7617480-A	rs7617480	0	7617480	intron	0	0.22	3E-8	7.522878745280337		   2.40	[1.62-3.18] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	16q12.2	16	53786615	FTO	FTO			79068			rs9939609-A	rs9939609	0	9939609	intron	0	0.40	3E-8	7.522878745280337		   2.10	[1.32-2.88] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	20p12.1	20	17141948	PCSK2	OTOR - PCSK2	56914	5126		      389.78	       84.16	rs852069-A	rs852069	0	852069	Intergenic	1	0.37	3E-8	7.522878745280337		   2.10	[1.32-2.88] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	5q31.2	5	138371626	KDM3B	KDM3B			51780			rs757647-A	rs757647	0	757647	intron	0	0.22	5E-8	7.30102999566398		   2.40	[1.62-3.18] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	13q34	13	111529090	C13orf16, ARHGEF7	TEX29 - SOX1	121793	6656		      184.84	      538.51	rs9555810-G	rs9555810	0	9555810	Intergenic	1	0.28	6E-8	7.221848749616355		   2.30	[1.52-3.08] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	11p11.2	11	46031024	PHF21A	PHF21A			51317			rs16938437-T	rs16938437	0	16938437	intron	0	0.09	6E-8	7.221848749616355		   3.70	[2.33-5.07] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3q21.3	3	128176383	EEFSEC	EEFSEC			60678			rs2687729-G	rs2687729	0	2687729	intron	0	0.27	1E-7	7		   2.30	[1.52-3.08] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	19p13.2	19	9889646	OLFM2	OLFM2			93145			rs1862471-G	rs1862471	0	1862471	intron	0	0.47	2E-7	6.698970004336019		   2.00	[1.22-2.78] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	2q22.2	2	141470940	LRP1B	LRP1B			53353			rs12472911-C	rs12472911	0	12472911	intron	0	0.20	2E-7	6.698970004336019		   2.50	[1.52-3.48] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	3q27.1	3	184292260	ECE2	ECE2			9718			rs3914188-G	rs3914188	0	3914188	UTR-3	0	0.27	3E-7	6.522878745280337		   2.20	[1.42-2.98] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	18q12.3	18	45376707	SLC14A2	SLC14A2			8170			rs2243803-A	rs2243803	0	2243803	intron	0	0.40	3E-7	6.522878745280337		   2.00	[1.22-2.78] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	15q22.2	15	60489314	RORA	RORA			6095			rs3743266-C	rs3743266	0	3743266	UTR-3	0	0.32	8E-7	6.096910013008056		   2.00	[1.22-2.78] week decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/01/2014	21102462	Elks CE	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102462	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry women, 557 Old Order Amish women, 1,103 Erasmus Rucphen women	Up to 12,813 European ancestry women, 910 Val Borbera women, 348 Orcadian women, 338 Friuli Venezia Giulia women, 322 Carlantino women	15q23	15	67410569	IQCH	IQCH;IQCH-AS1			64799;100506686			rs7359257-A	rs7359257	0	7359257	intron;intron	0	0.45	2E-6	5.698970004336018		   1.70	[0.92-2.48] week increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	10q21.2	10	62685804	ZNF365	ZNF365 - ALDH7A1P4	22891	544		       13.79	       55.19	rs10761659-G	rs10761659	0	10761659	Intergenic	1	0.538	4E-22	21.39794000867203		   1.23	[1.18-1.29] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	10q22.3	10	79300560	ZMIZ1	ZMIZ1			57178			rs1250550-G	rs1250550	0	1250550	intron	0	0.669	1E-30	30		   1.19	[1.15-1.23] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	14q24.1	14	68743482	ZFP36L1	RPL12P7 - ZFP36L1	326275	677		       49.86	       44.17	rs4902642-G	rs4902642	0	4902642	Intergenic	1	0.584	2E-10	9.698970004336017		   1.07	[1.11-1.04] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	22q11.21	22	21574352	YDJC	UBE2L3			7332			rs181359-T	rs181359	0	181359	intron	0	0.203	5E-16	15.30102999566398		   1.10	[1.06-1.15] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	10q21.1	10	58153390	UBE2D1	MRPS35P3 - IPMK	359779	253430		      170.38	       38.13	rs1819658-C	rs1819658	0	1819658	Intergenic	1	0.774	9E-17	16.04575749056067		   1.19	[1.13-1.25] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	19p13.2	19	10359299	TYK2,ICAM1,ICAM3	TYK2			7297			rs12720356-G	rs12720356	0	12720356	missense	0	0.084	1E-12	12		   1.12	[1.06-1.19] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1q24.3	1	172884320	TNFSF18,TNFSF4,FASLG	SLC25A38P1 - AIMP1P2	441915	100873064		      134.15	        1.63	rs7517810-T	rs7517810	0	7517810	Intergenic	1	0.246	2E-15	14.69897000433602		   1.22	[1.16-1.28] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	9q32	9	114790605	TNFSF15,TNFSF8	TNFSF15			9966			rs3810936-C	rs3810936	0	3810936	cds-synon	0	0.682	1E-15	15		   1.21	[1.15-1.27] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	13q14.11	13	42478744	TNFSF11	FABP3P2 - TNFSF11	56677	8600		      108.99	       83.99	rs2062305-G	rs2062305	0	2062305	Intergenic	1	0.346	5E-10	9.301029995663981		   1.10	[1.05-1.15] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2p21	2	43579779	THADA	THADA			63892			rs10495903-T	rs10495903	0	10495903	intron	0	0.129	2E-14	13.69897000433602		   1.14	[1.09-1.20] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	6q25.3	6	159069404	TAGAP	TAGAP - FNDC1	117289	84624		       24.25	       99.99	rs212388-G	rs212388	0	212388	Intergenic	1	0.393	2E-11	10.69897000433602		   1.10	[1.05-1.14] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2q37.1	2	230252159	SP140	SP140			11262			rs7423615-T	rs7423615	0	7423615	intron	0	0.187	3E-13	12.52287874528034		   1.12	[1.07-1.18] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	15q22.33	15	67150258	SMAD3	SMAD3			4088			rs17293632-T	rs17293632	0	17293632	intron	0	0.233	3E-19	18.52287874528033		   1.12	[1.07-1.16] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5q31.1	5	132448701	SLC22A4,SLC22A5,IRF1,IL3	C5orf56			441108			rs12521868-T	rs12521868	0	12521868	intron	0	0.422	1E-20	20		   1.23	[1.18-1.28] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1q22	1	155260340	SCAMP3,MUC1	SCAMP3			10067			rs3180018-A	rs3180018	1	1142287	cds-synon	0	0.25	2E-13	12.69897000433602		   1.13	[1.06-1.19] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	20q13.33	20	63718234	RTEL1,TNFRS-F6B,SLC2A4RG	ZGPAT			84619			rs4809330-G	rs4809330	0	4809330	intron	0	0.709	3E-15	14.52287874528034		   1.12	[1.06-1.18] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-G	rs2476601	0	2476601	missense;intron	0	0.907	4E-9	8.397940008672036		   1.26	[1.17-1.37] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	18p11.21	18	12809341	PTPN2	PTPN2			5771			rs1893217-G	rs1893217	0	1893217	intron	0	0.153	1E-14	14		   1.25	[1.18-1.32] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5p13.1	5	40410482	PTGER4	LINC00603 - PTGER4	102467077	5734		      357.16	      269.45	rs11742570-C	rs11742570	0	11742570	Intergenic	1	0.606	7E-36	35.15490195998574		   1.33	[1.27-1.39] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	11q13.1	11	64329761	PRDX5,ESRRA	LOC102723878			102723878			rs694739-A	rs694739	0	694739	intron	0	0.626	6E-10	9.221848749616356		   1.10	[1.05-1.16] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	6q21	6	105987150	PRDM1	RPL35P3 - PRDM1	728010	639		      684.29	       99.17	rs6568421-G	rs6568421	0	6568421	Intergenic	1	0.301	4E-8	7.397940008672037		   1.13	[1.07-1.18] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2q33.1	2	198032171	PLCL1	PLCL1			5334			rs6738825-A	rs6738825	0	6738825	intron	0	0.473	4E-9	8.397940008672036		   1.06	[1.02-1.11] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	16q12.1	16	50722970	NOD2	NOD2			64127			rs2076756-G	rs2076756	0	2076756	intron	0	0.26	4E-69	68.39794000867202		   1.53	[1.46-1.60] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	10q24.2	10	99524480	NKX2-3	GOT1 - NKX2-3	2805	159296		       93.71	        8.45	rs4409764-T	rs4409764	0	4409764	Intergenic	1	0.492	2E-20	19.69897000433602		   1.22	[1.17-1.27] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5q31.3	5	142099500	NDFIP1	MRPL11P2 - NDFIP1	134008	80762		       62.38	        9.26	rs11167764-C	rs11167764	0	11167764	Intergenic	1	0.796	2E-9	8.698970004336019		   1.06	[1.02-1.11] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	12q12	12	40398498	MUC19,LRRK2	MUC19			283463			rs11564258-A	rs11564258	0	11564258	intron	0	0.025	6E-21	20.22184874961635		   1.74	[1.55-1.95] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	22q12.2	22	30196498	MTMR3	RPS3AP51 - LIF	100271600	3976		       59.10	       43.95	rs713875-C	rs713875	0	713875	Intergenic	1	0.471	7E-12	11.15490195998574		   1.08	[1.04-1.13] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	3p21.31	3	49684099	MST1,GPX1,BSN	MST1			4485			rs3197999-A	rs3197999	0	3197999	missense	0	0.297	6E-17	16.22184874961636		   1.22	[1.16-1.27] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	17q21.2	17	42418754	MLX,STAT3	PTRF			284119			rs11871801-A	rs11871801	0	11871801	intron	0	0.756	3E-8	7.522878745280337		   1.15	[1.10-1.21] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	22q13.1	22	39263768	MAP3K7IP1	PDGFB - RPL3	5155	6122		       18.82	       49.11	rs2413583-C	rs2413583	0	2413583	Intergenic	1	0.83	1E-26	26		   1.23	[1.17-1.29] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	6p21.33	6	31574531	LTA,HLA-DQA2,TNF,LST1,LTB	LTA;TNF			4049;7124			rs1799964-C	rs1799964	0	1799964	nearGene-3;nearGene-5	0	0.209	4E-11	10.39794000867204		   1.19	[1.13-1.25] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	9p24.1	9	4981602	JAK2	HNRNPA1P41 - JAK2	100128701	3717		       35.64	        3.64	rs10758669-C	rs10758669	0	10758669	Intergenic	1	0.349	1E-13	13		   1.18	[1.13-1.23] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5q33.1	5	150890858	IRGM	IRGM - ZNF300	345611	91975		       42.19	        3.53	rs7714584-G	rs7714584	0	7714584	Intergenic	1	0.088	8E-19	18.09691001300805		   1.37	[1.28-1.47] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	10p15.1	10	6060049	IL2RA	IL2RA			3559			rs12722489-C	rs12722489	0	12722489	intron	0	0.852	3E-9	8.522878745280337		   1.11	[1.05-1.16] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	16p11.2	16	28479196	IL27,SH2B1,EIF3C,LAT,CD19	CLN3			1201			rs151181-G	rs151181	0	151181	intron	0	0.386	2E-11	10.69897000433602		   1.07	[1.03-1.12] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-G	rs11209026	0	11209026	missense	0	0.932	1E-64	64		   2.66	[2.36-3.00] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2q12.1	2	102437989	IL18RAP,IL12RL2,IL18R1,IL1RL1	IL18RAP			8807			rs2058660-G	rs2058660	0	2058660	intron	0	0.231	2E-12	11.69897000433602		   1.19	[1.14-1.26] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5q33.3	5	159360377	IL12B	LOC285626			285626			rs6556412-A	rs6556412	0	6556412	intron	0	0.332	5E-14	13.30102999566398		   1.18	[1.13-1.24] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1p36.23	1	7819003	VAMP3	PER3			8863			rs2797685-A	rs2797685	0	2797685	intron	0	0.19	7E-9	8.154901959985743		   1.05	[1.01-1.10] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1q32.1	1	206766559	IL10,IL19	RPS14P1 - IL10	100271063	3586		       70.26	        1.04	rs3024505-T	rs3024505	0	3024505	Intergenic	1	0.157	2E-14	13.69897000433602		   1.12	[1.07-1.17] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	7p12.2	7	50264865	IKZF1,ZPBP,FIGNL1	C7orf72 - IKZF1	100130988	10320		      105.61	       39.92	rs1456896-T	rs1456896	0	1456896	Intergenic	1	0.69	1E-8	8		   1.14	[1.09-1.20] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	21q22.3	21	44195140	ICOSLG	C21orf33			8209			rs2838519-G	rs2838519	0	2838519	intron	0	0.391	2E-14	13.69897000433602		   1.18	[1.13-1.23] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	17q12	17	39884510	GSMDL,ZPBP2,ORMDL3,IKZF3	ZPBP2 - GSDMB	124626	55876		        6.61	       20.09	rs2872507-A	rs2872507	0	2872507	Intergenic	1	0.458	2E-9	8.698970004336019		   1.14	[1.09-1.19] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	19p13.3	19	1124836	GPX4,SBNO2	SBNO2			22904			rs740495-G	rs740495	0	740495	intron	0	0.247	8E-12	11.09691001300806		   1.16	[1.10-1.21] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2p23.3	2	27519736	GCKR	GCKR			2646			rs780093-T	rs780093	0	780093	intron	0	0.418	5E-11	10.30102999566398		   1.15	[1.10-1.21] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	14q31.3	14	88006251	GALC,GPR65	GPR65			8477			rs8005161-T	rs8005161	0	8005161	intron	0	0.119	4E-18	17.39794000867204		   1.23	[1.16-1.31] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	19q13.33	19	48711017	FUT2,RASIP1	FUT2 - MAMSTR	2524	284358		        5.08	        1.73	rs281379-A	rs281379	0	281379	Intergenic	1	0.487	7E-12	11.15490195998574		   1.07	[1.04-1.11] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	11q12.2	11	61790331	FADS1	TMEM258			746			rs102275-C	rs102275	0	102275	intron	0	0.341	2E-11	10.69897000433602		   1.08	[1.04-1.12] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5q15	5	96908845	ERAP2,LRAP	ERAP2			64167			rs2549794-C	rs2549794	0	2549794	intron	0	0.409	1E-10	10		   1.05	[1.02-1.09] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2p23.3	2	25269598	DNMT3A	DNMT3A			1788			rs13428812-G	rs13428812	0	13428812	intron	0	0.326	9E-10	9.045757490560675		   1.06	[1.03-1.10] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1q31.3	1	197758512	DENND1B	DENND1B			163486			rs1998598-G	rs1998598	0	1998598	intron	0	0.302	9E-9	8.045757490560675		   1.04	[1.00-1.09] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	10p11.21	10	35246767	CREM	CCNY			219771			rs12242110-G	rs12242110	0	12242110	nearGene-5	0	0.315	1E-9	8.999999999999998		   1.15	[1.10-1.20] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5q35.2	5	173852839	CPEB4	BOD1 - CPEB4	91272	80315		      236.14	       35.49	rs359457-T	rs359457	0	359457	Intergenic	1	0.571	3E-12	11.52287874528034		   1.08	[1.04-1.12] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	6p22.3	6	20728500	CDKAL1	CDKAL1			54901			rs6908425-C	rs6908425	0	6908425	intron	0	0.784	1E-8	8		   1.17	[1.11-1.23] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1q23.3	1	160860478	CD244,ITLN1	CD244			51744			rs4656940-A	rs4656940	0	4656940	intron	0	0.801	6E-7	6.221848749616355		   1.15	[1.09-1.21] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	6q27	6	166993145	CCR6	RNASET2 - MIR3939	8635	100500857		       36.56	        4.66	rs415890-C	rs415890	0	415890	Intergenic	1	0.522	3E-12	11.52287874528034		   1.17	[1.12-1.22] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	17q12	17	34266646	CCL2,CCL7	CCL2 - CCL7	6347	6354		        9.44	        3.57	rs3091315-A	rs3091315	0	3091315	Intergenic	1	0.723	2E-13	12.69897000433602		   1.20	[1.14-1.26] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	9q34.3	9	136372044	CARD9,SNAPC4	CARD9			64170			rs4077515-T	rs4077515	0	4077515	missense	0	0.411	1E-36	35.99999999999999		   1.18	[1.13-1.22] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2p16.1	2	60997124	C2orf74,REL	PUS10			150962			rs10181042-T	rs10181042	0	10181042	intron	0	0.42	7E-9	8.154901959985743		   1.14	[1.09-1.19] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	1q32.1	1	200908434	C1orf106,KIF21B	C1orf106			55765			rs7554511-C	rs7554511	0	7554511	intron	0	0.726	2E-7	6.698970004336019		   1.14	[1.08-1.19] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	13q14.11	13	43883789	C13orf31	LACC1			144811			rs3764147-G	rs3764147	0	3764147	missense	0	0.245	1E-10	10		   1.17	[1.12-1.23] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	11q13.5	11	76590331	C11orf30	C11orf30 - LRRC32	56946	2615		       37.44	       67.19	rs7927997-T	rs7927997	0	7927997	Intergenic	1	0.389	6E-13	12.22184874961636		   1.17	[1.12-1.22] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	6q15	6	90263440	BACH2	BACH2			60468			rs1847472-G	rs1847472	0	1847472	intron	0	0.658	5E-9	8.301029995663981		   1.07	[1.03-1.11] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	2q37.1	2	233275771	ATG16L1	ATG16L1;SCARNA5			55054;677775			rs3792109-A	rs3792109	0	3792109	intron;ncRNA	0	0.529	7E-41	40.15490195998574		   1.34	[1.29-1.40] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	3p24.3	3	18665366	intergenic	RAD23BP1 - KCNH8	131185	131096		      125.47	      483.09	rs13073817-A	rs13073817	0	13073817	Intergenic	1	0.322	7E-9	8.154901959985743		   1.08	[1.03-1.13] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	5q13.2	5	73255307	intergenic	TMEM174 - FOXD1	134288	2297		       80.06	      190.95	rs7702331-A	rs7702331	0	7702331	Intergenic	1	0.6	6E-12	11.22184874961635		   1.12	[1.07-1.17] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	6p25.2	6	3433084	intergenic	SLC22A23			63027			rs17309827-T	rs17309827	0	17309827	intron	0	0.639	7E-9	8.154901959985743		   1.10	[1.05-1.16] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	8q24.21	8	128554935	intergenic	LINC01263 - LINC00977	101927774	728724		      127.02	      661.53	rs6651252-T	rs6651252	0	6651252	Intergenic	1	0.865	4E-18	17.39794000867204		   1.23	[1.17-1.30] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	19q13.11	19	33266156	intergenic	SLC7A10 - CEBPA	56301	1050		       40.31	       33.78	rs736289-T	rs736289	0	736289	Intergenic	1	0.612	9E-9	8.045757490560675		   1.06	[1.02-1.11] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	21q21.1	21	15440233	intergenic	NRIP1 - CYCSP42	8204	343727		      375.30	       50.29	rs1736020-C	rs1736020	0	1736020	Intergenic	1	0.579	9E-12	11.04575749056067		   1.16	[1.11-1.21] 	Affymetrix & Illumina [953,241] (imputed)	N
10/19/2012	21102463	Franke A	11/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21102463	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry parent-offspring trios	8q24.13	8	125525328	intergenic	TRIB1 - LINC00861	10221	100130231		       86.92	      397.20	rs4871611-A	rs4871611	0	4871611	Intergenic	1	0.609	2E-12	11.69897000433602		   1.17	[1.12-1.23] 	Affymetrix & Illumina [953,241] (imputed)	N
01/07/2011	21095009	Li YJ	11/20/2010	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/21095009	Genome-wide association studies reveal genetic variants in CTNND2 for high myopia in Singapore Chinese.	Myopia (pathological)	65 Singaporean Chinese child cases, 238 Singaporean Chinese child controls, 222 Singaporean Chinese adult cases, 455 Singaporean Chinese adult cases	959 Japanese ancestry cases, 2,128 Japanese ancestry controls	5p15.2	5	11169833	CTNND2	CTNND2			1501			rs6885224-C	rs6885224	0	6885224	intron	0	0.26	8E-6	5.096910013008055		   1.24	[1.11-1.39] 	Illumina [459,687]	N
01/06/2011	21088011	Erdmann J	11/18/2010	Eur Heart J	http://www.ncbi.nlm.nih.gov/pubmed/21088011	Genome-wide association study identifies a new locus for coronary artery disease on chromosome 10p11.23.	Coronary heart disease	1,157 European ancestry cases, 1,748 European ancestry controls	7,887 European ancestry cases, 8,244 European ancestry controls	10p11.23	10	30027143	KIAA1462	KIAA1462			57608			rs3739998-C	rs3739998	0	3739998	missense	0	0.44	1E-11	11		   1.15	[1.11-1.20] 	Affymetrix [254,558]	N
06/24/2014	21124955	Marzi C	11/18/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21124955	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian individuals	2,136 European ancestry individuals	11p15.1	11	18264227	SAA1	ST13P5 - SAA1	144106	6288		         .73	        2.03	rs4638289-A	rs4638289	0	4638289	Intergenic	1	0.32	3E-53	52.52287874528033		    .31	[0.27-0.35] unit increase	Affymetrix & Illumina [2,593,456] (imputed)	N
06/24/2014	21124955	Marzi C	11/18/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21124955	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian individuals	2,136 European ancestry individuals	11p15.1	11	18301970	HPS5, GTF2H1	HPS5			11234			rs4353250-T	rs4353250	0	4353250	intron	0	0.35	2E-51	50.69897000433601		    .27	[0.23-0.31] unit increase	Affymetrix & Illumina [2,593,456] (imputed)	N
06/24/2014	21124955	Marzi C	11/18/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21124955	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian individuals	2,136 European ancestry individuals	11p15.1	11	18398259	LDHA, LDHC	LDHA			3939			rs2896526-G	rs2896526	0	2896526	intron	0	0.17	4E-22	21.39794000867203		    .22	[0.17-0.27] unit increase	Affymetrix & Illumina [2,593,456] (imputed)	N
06/24/2014	21124955	Marzi C	11/18/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21124955	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian individuals	2,136 European ancestry individuals	11p15.1	11	18349351	GTF2H1, HPS5, LDHA, LDHC	GTF2H1			2965			rs4150642-G	rs4150642	0	4150642	intron	0	0.2	3E-111	110.5228787452803		    .36	[0.26-0.46] unit increase	Affymetrix & Illumina [2,593,456] (imputed)	N
01/12/2011	21124946	Paternoster L	11/18/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21124946	Genome-wide association meta-analysis of cortical bone mineral density unravels allelic heterogeneity at the RANKL locus and potential pleiotropic effects on bone.	Bone mineral density	1,934 European ancestry individuals	Up to 3,835 European ancestry individuals	13q14.11	13	42541997	RANKL	FABP3P2 - TNFSF11	56677	8600		      172.24	       20.74	rs1021188-C	rs1021188	0	1021188	Intergenic	1	0.18	2E-14	13.69897000433602		   3.89	[1.91-5.87] mg/cm3 decrease	Illumina [2,417,199] (imputed)	N
01/06/2011	21084426	Saad M	11/17/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21084426	Genome-wide association study confirms BST1 and suggests a locus on 12q24 as the risk loci for Parkinson's disease in the European population.	Parkinson's disease	1,039 European ancestry cases, 1,984 European ancestry controls	3,232 European ancestry cases, 7,064 European ancestry controls	4p15.32	4	15735725	BST1	BST1			683			rs4698412-A	rs4698412	0	4698412	intron	0	0.55	2E-6	5.698970004336018		   1.14	[1.08-1.20] 	Illumina [492,929]	N
01/06/2011	21084426	Saad M	11/17/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21084426	Genome-wide association study confirms BST1 and suggests a locus on 12q24 as the risk loci for Parkinson's disease in the European population.	Parkinson's disease	1,039 European ancestry cases, 1,984 European ancestry controls	3,232 European ancestry cases, 7,064 European ancestry controls	12q23.3	12	106556209	Intergenic	LOC100287944			100287944			rs4964469-A	rs4964469	0	4964469	intron	0	0.37	2E-7	6.698970004336019		   1.16	[1.09-1.22] 	Illumina [492,929]	N
01/06/2011	21084426	Saad M	11/17/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21084426	Genome-wide association study confirms BST1 and suggests a locus on 12q24 as the risk loci for Parkinson's disease in the European population.	Parkinson's disease	1,039 European ancestry cases, 1,984 European ancestry controls	3,232 European ancestry cases, 7,064 European ancestry controls	4q22.1	4	89720189	SNCA	GPRIN3 - SNCA	285513	6622		      412.18	        3.91	rs356220-T	rs356220	0	356220	Intergenic	1	0.35	3E-8	7.522878745280337		   1.37	[NR] 	Illumina [492,929]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	7q21.13	7	88967071	ZNF804B	ZNF804B			219578			rs6959888-?	rs6959888	0	6959888	intron	0	0.11	2E-6	5.698970004336018		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	20p11.23	20	18098487	CSRP2BP	RPL15P1 - PET117	128756	100303755		        7.74	       39.37	rs17725255-?	rs17725255	0	17725255	Intergenic	1	0.11	2E-6	5.698970004336018		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	1p13.3	1	107288236	NTNG1	NTNG1			22854			rs10494067-?	rs10494067	0	10494067	intron	0	0.06	6E-6	5.221848749616356		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	14q12	14	32813264	AKAP6	AKAP6			9472			rs2383378-?	rs2383378	0	2383378	intron	0	0.41	6E-6	5.221848749616356		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	5q14.1	5	81791715	SSBP2	SSBP2 - SHFM1P1	23635	153842		       40.46	      100.72	rs410644-?	rs410644	0	410644	Intergenic	1	0.47	7E-6	5.154901959985742		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	5p14.1	5	26723674	CDH9	MSNP1 - CDH9	4479	1007		      810.40	      156.93	rs4479806-?	rs4479806	0	4479806	Intergenic	1	0.10	8E-6	5.096910013008055		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	13q33.3	13	107604872	FAM155A	FAM155A			728215			rs957788-?	rs957788	0	957788	intron	0	0.31	8E-6	5.096910013008055		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	2q31.1	2	169276576	LRP2	LRP2			4036			rs830998-?	rs830998	0	830998	intron	0	0.19	9E-6	5.045757490560675		NR	NR	Illumina [~598,000]	N
01/06/2011	21079607	Wang K	11/16/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21079607	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	3p25.3	3	11634315	VGLL4	VGLL4			9686			rs6782029-?	rs6782029	0	6782029	intron	0	0.24	9E-6	5.045757490560675		NR	NR	Illumina [~598,000]	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	3	38725824	SCN10A	SCN10A			6336			rs6801957-T	rs6801957	0	6801957	intron	0	0.41	1E-28	28		    .77	[0.63-0.91] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	3	38592432	SCN5A	SCN5A			6331			rs11708996-C	rs11708996	0	11708996	intron	0	0.16	1E-16	16		    .79	[0.59-0.99] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	6p21.2	6	36655602	CDKN1A	TRNAI25			100189401			rs9470361-A	rs9470361	0	9470361		0	0.25	3E-27	26.52287874528033		    .87	[0.71-1.03] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	12q24.21	12	114355435	TBX5	TBX5			6910			rs883079-C	rs883079	0	883079	UTR-3	0	0.29	1E-10	10		    .49	[0.33-0.65] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	1p32.3	1	51080468	C1orf185, RNF11, CDKN2C, FAF1	C1orf185			284546			rs17391905-G	rs17391905	0	17391905	intron	0	0.05	3E-10	9.522878745280336		   1.35	[0.90-1.80] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	7p12.3	7	46580547	IGFBP3	TTC4P1 - HMGN1P19	222052	100874445		      579.77	       54.07	rs7784776-G	rs7784776	0	7784776	Intergenic	1	0.43	1E-9	8.999999999999998		    .39	[0.25-0.53] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	13q22.1	13	73946049	KLF12	KLF12			11278			rs1886512-A	rs1886512	0	1886512	intron	0	0.37	1E-8	8		    .40	[0.26-0.54] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p14.1	3	66381178	LRIG1,SLC25A26	LRIG1			26018			rs2242285-A	rs2242285	0	2242285	intron	0	0.42	1E-8	8		    .37	[0.23-0.51] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	10q21.1	10	52464217	DKK1	PRKRIRP3 - MBL2	399774	4153		       50.72	      296.64	rs1733724-A	rs1733724	0	1733724	Intergenic	1	0.25	3E-8	7.522878745280337		    .49	[0.31-0.67] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	17q21.32	17	46935905	GOSR2	GOSR2			9570			rs17608766-C	rs17608766	0	17608766	intron	0	0.16	5E-10	9.301029995663981		    .53	[0.33-0.73] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	3	38678444	SCN10A, SCN5A	SCN5A - SCN10A	6331	6336		       28.77	       18.90	rs9851724-C	rs9851724	0	9851724	Intergenic	1	0.33	2E-20	19.69897000433602		    .66	[0.52-0.80] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/06/2011	21076409	Sotoodehnia N	11/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21076409	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	3	38616408	SCN5A	SCN5A			6331			rs11710077-T	rs11710077	0	11710077	intron	0	0.21	6E-22	21.22184874961636		    .84	[0.66-1.02] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/09/2010	21079520	Sato Y	11/12/2010	J Thorac Oncol	http://www.ncbi.nlm.nih.gov/pubmed/21079520	Genome-wide association study on overall survival of advanced non-small cell lung cancer patients treated with carboplatin and paclitaxel.	Non-small cell lung cancer (survival)	105 East Asian ancestry cases	NA	2q37.1	2	232561816	EIF4E2	EIF4E2			9470			rs1656402-?	rs1656402	0	1656402	intron	0	NR	8E-8	7.096910013008055		   2.38	[1.49-3.85] (AG)	Illumina [109,365]	N
12/09/2010	21079520	Sato Y	11/12/2010	J Thorac Oncol	http://www.ncbi.nlm.nih.gov/pubmed/21079520	Genome-wide association study on overall survival of advanced non-small cell lung cancer patients treated with carboplatin and paclitaxel.	Non-small cell lung cancer (survival)	105 East Asian ancestry cases	NA	21q22.2	21	38801604	ETS2	LINC00114 - ETS2	400866	2114		       28.13	        3.70	rs1209950-T	rs1209950	0	1209950	Intergenic	1	NR	3E-7	6.522878745280337		   4.96	[2.52-9.76] (CT)	Illumina [109,365]	N
12/09/2010	21079520	Sato Y	11/12/2010	J Thorac Oncol	http://www.ncbi.nlm.nih.gov/pubmed/21079520	Genome-wide association study on overall survival of advanced non-small cell lung cancer patients treated with carboplatin and paclitaxel.	Non-small cell lung cancer (survival)	105 East Asian ancestry cases	NA	21q22.2	21	40043117	DSCAM	DSCAM			1826			rs9981861-G	rs9981861	0	9981861	intron	0	NR	4E-6	5.397940008672037		   1.33	[0.82-2.15] (AG)	Illumina [109,365]	N
01/06/2011	21068099	Evangelou E	11/10/2010	Ann Rheum Dis	http://www.ncbi.nlm.nih.gov/pubmed/21068099	Meta-analysis of genome-wide association studies confirms a susceptibility locus for knee osteoarthritis on chromosome 7q22.	Osteoarthritis	2,371 European ancestry cases, 35,909 European ancestry controls	4,338 European ancestry cases, 8,530 European ancestry controls, 1,183 East Asian ancestry cases, 1,245 East Asian ancestry controls	7q22.3	7	107567250	DUS4L	DUS4L			11062			rs4730250-G	rs4730250	0	4730250	intron	0	0.17 (European)	6E-8	7.221848749616355		   1.15	[1.10-1.22] 	Affymetrix & Illumina [2,335,627] (imputed)	N
01/04/2011	21094521	Wan YI	11/10/2010	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/21094521	A genome-wide association study to identify genetic determinants of atopy in subjects from the United Kingdom.	Atopy	1,083 European ancestry cases, 2,770 European ancestry controls	Up to 1,058 European ancestry cases, 2,254 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [459,334]	N
12/09/2010	21062454	Li J	11/09/2010	Breast Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/21062454	A genome-wide association scan on estrogen receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	617 European ancestry cases, 4,583 European ancestry controls	1,011 cases, 7,604 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [285,984]	N
01/04/2011	21051773	Scerri TS	11/09/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21051773	PCSK6 is associated with handedness in individuals with dyslexia.	Handedness in dyslexia	192 individuals	573 European ancestry individuals	15q26.3	15	101334918	PCSK6	PCSK6			5046			rs11855415-A	rs11855415	0	11855415	intron	0	0.25	2E-8	7.698970004336018		    .35	[0.23-0.47] SD increase	Illumina [~2 million] (imputed)	N
01/04/2011	21059989	Lee JH	11/08/2010	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/21059989	Identification of novel loci for Alzheimer disease and replication of CLU, PICALM, and BIN1 in Caribbean Hispanic individuals.	Alzheimer's disease	549 Caribbean Hispanic cases, 544 Caribbean Hispanic controls	3,839 European ancestry individuals, 116 Caribbean Hispanic cases, 70 Caribbean Hispanic controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [627,380]	N
01/04/2011	21061259	Plant D	11/08/2010	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/21061259	Genome-wide association study of genetic predictors of anti-tumor necrosis factor treatment efficacy in rheumatoid arthritis identifies associations with polymorphisms at seven loci.	Response to anti-TNF treatment in rheumatoid arthritis	566 European ancestry individuals	720 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [459,446]	N
01/14/2011	21059979	Shen H	11/08/2010	Arch Intern Med	http://www.ncbi.nlm.nih.gov/pubmed/21059979	Familial defective apolipoprotein B-100 and increased low-density lipoprotein cholesterol and coronary artery calcification in the old order amish.	LDL cholesterol	841 Amish individuals	663 Amish inidividuals	2p24.1	2	20703255	APOB	C2orf43			60526			rs4971516-?	rs4971516	0	4971516	intron	0	0.06	2E-40	39.69897000433601	(total cholesterol)	NR	NR	Affymetrix [369,241]	N
01/14/2011	21059979	Shen H	11/08/2010	Arch Intern Med	http://www.ncbi.nlm.nih.gov/pubmed/21059979	Familial defective apolipoprotein B-100 and increased low-density lipoprotein cholesterol and coronary artery calcification in the old order amish.	LDL cholesterol	841 Amish individuals	663 Amish inidividuals	2p24.1	2	20703255	APOB	C2orf43			60526			rs4971516-?	rs4971516	0	4971516	intron	0	0.06	2E-52	51.69897000433601	(LDL)	NR	NR	Affymetrix [369,241]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	1q31.2	1	193026083	UCHL5	UCHL5			51377			rs9427573-?	rs9427573	0	9427573	intron	0	NR	5E-6	5.301029995663981		   2.56	[1.71-3.82] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	2p16.1	2	58845834	Intergenic	LINC01122			400955			rs17552189-?	rs17552189	0	17552189	intron	0	NR	4E-6	5.397940008672037		   1.40	[1.21-1.61] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	10p12.1	10	29000102	Intergenic	RPL21P93 - LYZL1	653665	84569		      100.58	      288.95	rs11007350-?	rs11007350	0	11007350	Intergenic	1	NR	3E-6	5.522878745280337		   1.37	[1.20-1.56] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	3q13.12	3	106570103	Intergenic	CBLB - FCF1P3	868	100128733		      701.06	      278.57	rs12491921-?	rs12491921	0	12491921	Intergenic	1	NR	1E-6	5.999999999999999		   1.39	[1.22-1.58] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	12q23.3	12	104623386	CHST11	CHST11			50515			rs12811699-?	rs12811699	0	12811699	intron	0	NR	8E-6	5.096910013008055		   1.74	[1.36-2.21] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	13q12.12	13	23170240	Intergenic	SGCG			6445			rs9507041-?	rs9507041	0	9507041	intron	0	NR	8E-6	5.096910013008055		   1.55	[1.28-1.88] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	17q22	17	56201354	ANKFN1	ANKFN1			162282			rs1019238-?	rs1019238	0	1019238	intron	0	NR	6E-7	6.221848749616355		   1.45	[1.25-1.68] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	17q22	17	56115162	Intergenic	PCTP - ANKFN1	58488	162282		      272.01	       38.31	rs1431318-?	rs1431318	0	1431318	Intergenic	1	NR	9E-7	6.045757490560675		   1.41	[1.23-1.62] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	17q22	17	56125999	Intergenic	PCTP - ANKFN1	58488	162282		      282.84	       27.48	rs8065311-?	rs8065311	0	8065311	Intergenic	1	NR	2E-6	5.698970004336018		   1.43	[1.23-1.66] 	Illumina [948,142]	N
08/02/2011	21668797	Agrawal A	11/04/2010	Addict Biol	http://www.ncbi.nlm.nih.gov/pubmed/21668797	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	22q13.33	22	49957323	PIM3	CRELD2 - PIM3	79174	415116		       29.78	        3.17	rs28372448-?	rs28372448	0	28372448	Intergenic	1	NR	8E-6	5.096910013008055		   1.68	[1.34-2.11] 	Illumina [948,142]	N
01/11/2011	21057379	Curtis D	11/04/2010	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21057379	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	17q24.2	17	66920916	CACNG5	CACNG5 - CACNG4	27091	27092		       35.64	       43.95	rs17645023-?	rs17645023	0	17645023	Intergenic	1	NR	6E-7	6.221848749616355		NR	NR	Affymetrix [302,482]	N
01/11/2011	21057379	Curtis D	11/04/2010	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21057379	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	1p31.1	1	73873484	LRRIQ3	KRT8P21 - LRRIQ3	126811	127255		      767.00	      152.53	rs11210359-?	rs11210359	0	11210359	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [302,482]	N
01/11/2011	21057379	Curtis D	11/04/2010	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21057379	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	3p22.1	3	43189231	C3orf39	POMGNT2 - SNRK	84892	54861		       83.15	       97.28	rs17075286-?	rs17075286	0	17075286	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [302,482]	N
01/11/2011	21057379	Curtis D	11/04/2010	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21057379	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	3p14.3	3	55537732	ERC2	ERC2			26059			rs1795648-?	rs1795648	0	1795648	intron	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [302,482]	N
01/11/2011	21057379	Curtis D	11/04/2010	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21057379	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	7q36.3	7	157717503	PTPRN2	PTPRN2			5799			rs6459804-?	rs6459804	0	6459804	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [302,482]	N
01/11/2011	21057379	Curtis D	11/04/2010	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21057379	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	Xp11.22	23	53947621	PHF8	PHF8			23133			rs7065696-?	rs7065696	0	7065696	intron	0	NR	4E-7	6.397940008672037		NR	NR	Affymetrix [302,482]	N
01/04/2011	21048783	Kamada F	11/04/2010	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/21048783	A genome-wide association study identifies RNF213 as the first Moyamoya disease gene.	Moyamoya disease	72 Japanese ancestry cases, 45 Japanese ancestry controls	63 Japanese ancestry cases, 45 Japanese ancestry controls	17q25.3	17	80374694	RNF213	RNF213;LOC100294362			57674;100294362			rs6565681-A	rs6565681	0	6565681	intron;intron	0	0.37	2E-8	7.698970004336018		   4.82	[2.73-8.49] 	Illumina [785,720]	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31423624	MICA	TRNAI25			100189401			rs4418214-C	rs4418214	0	4418214		0	0.075	1E-34	34	(European)	   4.40	[NR] 	Illumina [1,384,048] (imputed)	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31306603	HLA-C	TRNAI25			100189401			rs9264942-C	rs9264942	0	9264942		0	0.34	3E-35	34.52287874528033	(European)	   2.90	[NR] 	Illumina [1,384,048] (imputed)	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31464003	HLA-B	HCP5			10866			rs2395029-G	rs2395029	0	2395029	ncRNA	0	0.032	1E-25	25	(European)	   5.30	[NR] 	Illumina [1,384,048] (imputed)	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31175805	PSORS1C3	PSORS1C3			100130889			rs3131018-C	rs3131018	0	3131018	intron	0	0.625	4E-16	15.39794000867204	(European)	   2.10	[NR] 	Illumina [1,384,048] (imputed)	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31354782	HLA-B	HLA-B;MIR6891			3106;102465537			rs2523608-G	rs2523608	0	2523608	intron;nearGene-3	0	0.326	9E-20	19.04575749056067	(African American)	   2.60	[NR] 	Illumina [1,384,048] (imputed)	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31463914	Intergenic	HCP5			10866			rs2255221-T	rs2255221	0	2255221	ncRNA	0	0.137	4E-14	13.39794000867204	(African American)	   2.70	[NR] 	Illumina [1,384,048] (imputed)	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31057031	Intergenic	HCG22			285834			rs9262632-G	rs9262632	0	9262632	intron	0	0.10	1E-8	8	(African American)	   3.10	[NR] 	Illumina [1,384,048] (imputed)	N
01/13/2011	21051598	Pereyra F	11/04/2010	Science	http://www.ncbi.nlm.nih.gov/pubmed/21051598	The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.	HIV-1 control	516 European cases, 1,196 European controls, 341 African American cases, 892 African American controls, 117 Hispanic ancestry controls, 560 Hispanic ancestry controls	NA	6p21.33	6	31359287	HLA-B	HLA-B			3106			rs2523590-C	rs2523590	0	2523590	nearGene-5	0	0.164	2E-13	12.69897000433602	(African American)	   2.40	[NR] 	Illumina [1,384,048] (imputed)	N
01/03/2011	21072201	Kim JH	11/03/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/21072201	Genome-wide and follow-up studies identify CEP68 gene variants associated with risk of aspirin-intolerant asthma.	Aspirin intolerance in asthmatics	80 Korean ancestry cases, 100 Korean ancestry controls	163 Korean ancestry cases, 429 Korean ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [96,984]	N
01/03/2011	21044948	Spencer CC	11/02/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21044948	Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.	Parkinson's disease	1,705 European ancestry cases, 5,175 European ancestry controls	1,039 European ancestry cases, 1,984 European ancestry controls	3p24.1	3	28664273	NR	LINC00693			645206			rs7617877-A	rs7617877	0	7617877	intron	0	0.36	3E-6	5.522878745280337		   1.23	[1.13-1.33] 	Illumina [532,616]	N
01/03/2011	21044948	Spencer CC	11/02/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21044948	Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.	Parkinson's disease	1,705 European ancestry cases, 5,175 European ancestry controls	1,039 European ancestry cases, 1,984 European ancestry controls	4q22.1	4	89720189	SNCA	GPRIN3 - SNCA	285513	6622		      412.18	        3.91	rs356220-A	rs356220	0	356220	Intergenic	1	0.36	9E-16	15.04575749056067		   1.27	[1.17-1.37] 	Illumina [532,616]	N
01/03/2011	21044948	Spencer CC	11/02/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21044948	Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.	Parkinson's disease	1,705 European ancestry cases, 5,175 European ancestry controls	1,039 European ancestry cases, 1,984 European ancestry controls	17q21.31	17	46003698	MAPT	MAPT			4137			rs8070723-?	rs8070723	0	8070723	intron	0	0.76	7E-12	11.15490195998574		   1.30	[1.19-1.43] 	Illumina [532,616]	N
01/04/2011	21042317	Wray NR	11/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21042317	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	1q42.11	1	224351238	CNIH4,NVL,WDR26	MIR320B2 - CNIH4	100313769	29097		       94.10	        5.57	rs11579964-C	rs11579964	0	11579964	Intergenic	1	0.84	4E-6	5.397940008672037		   1.19	[NR] 	Affymetrix & Illumina [1,251,157] (imputed)	N
01/04/2011	21042317	Wray NR	11/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21042317	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	3q27.2	3	185158995	C3orf70,EHHADH	C3orf70 - EHHADH-AS1	285382	339926		        5.98	        3.91	rs7647854-G	rs7647854	0	7647854	Intergenic	1	0.16	5E-6	5.301029995663981		   1.19	[NR] 	Affymetrix & Illumina [1,251,157] (imputed)	N
01/04/2011	21042317	Wray NR	11/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21042317	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	16q22.3	16	73467637	Intergenic	LOC101927998			101927998			rs12446956-C	rs12446956	0	12446956	intron	0	0.13	1E-6	5.999999999999999		   1.22	[NR] 	Affymetrix & Illumina [1,251,157] (imputed)	N
01/04/2011	21042317	Wray NR	11/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21042317	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	18q12.3	18	43292308	Intergenic	SYT4 - IBTKP1	6860	100127883		       14.66	      747.16	rs12457996-T	rs12457996	0	12457996	Intergenic	1	0.77	6E-6	5.221848749616356		   1.15	[NR] 	Affymetrix & Illumina [1,251,157] (imputed)	N
01/03/2011	21044949	Yang J	11/02/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/21044949	ELF1 is associated with systemic lupus erythematosus in Asian populations.	Systemic lupus erythematosus	612 Chinese ancestry cases, 1,160 Chinese ancestry controls	2,090 Chinese ancestry cases, 1,981 Chinese ancestry controls, 462 Thai ancestry cases, 951 Thai ancestry controls	13q14.11	13	40983974	ELF1	ELF1			1997			rs7329174-G	rs7329174	0	7329174	intron	0	0.22	1E-8	8		   1.26	[1.16-1.36] 	Illumina [513,108]	N
01/03/2011	21184583	Zlojutro M	11/02/2010	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21184583	Genome-wide association study of theta band event-related oscillations identifies serotonin receptor gene HTR7 influencing risk of alcohol dependence.	Event-related brain oscillations	431 European ancestry alcohol dependence cases, 340 European ancestry controls, 209 African American alcohol dependence cases, 84 African American controls	683 alcohol dependence cases and 412 controls from multiplex families	2q11.2	2	96562302	ARID5A	ARID5A - KANSL3	10865	55683		        9.67	       30.85	rs4907240-A	rs4907240	0	4907240	Intergenic	1	0.23	4E-6	5.397940008672037		    .25	[0.14-0.36] uV increase	Illumina [951,071]	N
01/03/2011	21184583	Zlojutro M	11/02/2010	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21184583	Genome-wide association study of theta band event-related oscillations identifies serotonin receptor gene HTR7 influencing risk of alcohol dependence.	Event-related brain oscillations	431 European ancestry alcohol dependence cases, 340 European ancestry controls, 209 African American alcohol dependence cases, 84 African American controls	683 alcohol dependence cases and 412 controls from multiplex families	20q13.32	20	58900136	GNAS1	GNAS			2778			rs13831-T	rs13831	0	13831	intron	0	0.24	6E-6	5.221848749616356		    .21	[0.11-0.31] uV decrease	Illumina [951,071]	N
01/03/2011	21184583	Zlojutro M	11/02/2010	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/21184583	Genome-wide association study of theta band event-related oscillations identifies serotonin receptor gene HTR7 influencing risk of alcohol dependence.	Event-related brain oscillations	431 European ancestry alcohol dependence cases, 340 European ancestry controls, 209 African American alcohol dependence cases, 84 African American controls	683 alcohol dependence cases and 412 controls from multiplex families	8q24.13	8	123684627	ANXA13	ANXA13			312			rs2294015-G	rs2294015	0	2294015	missense	0	0.33	9E-6	5.045757490560675		    .21	[0.12-0.30] uV increase	Illumina [951,071]	N
01/03/2011	21041692	Denny JC	11/01/2010	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21041692	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	3p22.2	3	38733341	SCN10A	SCN10A			6336			rs6800541-C	rs6800541	0	6800541	intron	0	0.41	5E-7	6.30102999566398		   2.60	[1.62-3.70] ms increase	Illumina [514,999]	N
01/03/2011	21041692	Denny JC	11/01/2010	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21041692	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	10q23.31	10	89067022	FAS,CH25H	MIR4679-1 - CH25H	100616128	9023		        3.61	      138.92	rs1937332-G	rs1937332	0	1937332	Intergenic	1	0.47	7E-7	6.154901959985743		   2.60	[1.58-3.62] ms increase	Illumina [514,999]	N
01/03/2011	21041692	Denny JC	11/01/2010	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21041692	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	18q22.1	18	65364000	C18orf20, LOC643448	LINC00305 - CDH7	221241	1005		     1214.97	      386.25	rs470490-G	rs470490	0	470490	Intergenic	1	0.39	5E-6	5.301029995663981		   2.45	[1.41-3.49] ms increase	Illumina [514,999]	N
01/03/2011	21041692	Denny JC	11/01/2010	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21041692	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	2q31.3	2	181397142	Intergenic	LOC101927156			101927156			rs7602460-A	rs7602460	0	7602460	intron	0	0.40	6E-6	5.221848749616356		   2.42	[1.36-3.48] ms decrease	Illumina [514,999]	N
01/03/2011	21041692	Denny JC	11/01/2010	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/21041692	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	8q22.2	8	100317981	RNF19A, ANKRD46	RNF19A			25897			rs1371867-C	rs1371867	0	1371867	intron	0	0.42	9E-6	5.045757490560675		   2.32	[1.30-3.34] ms increase	Illumina [514,999]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	4q34.3	4	179363660	Intergenic	RNA5SP173 - LINC00290	100873437	728081		      956.83	     1700.43	rs6811556-A	rs6811556	0	6811556	Intergenic	1	NR	9E-6	5.045757490560675	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	5q21.3	5	108498546	Intergenic	FBXL17 - RPS20P3	64839	6225		      115.98	       94.94	rs4571457-G	rs4571457	0	4571457	Intergenic	1	NR	7E-6	5.154901959985742	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	6	30831622	DDR1, GTF2H4, IER3, FLOT1, VARS2, MIR588	LINC00243			401247			rs9501030-A	rs9501030	0	9501030	nearGene-5	0	NR	4E-6	5.397940008672037	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	7p21.1	7	18760790	HDAC9	HDAC9			9734			rs11764116-A	rs11764116	0	11764116	intron	0	NR	2E-6	5.698970004336018	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	7q21.11	7	82228577	CACNA2D1	CACNA2D1			781			rs929351-C	rs929351	0	929351	intron	0	NR	8E-6	5.096910013008055	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	13q31.1	13	78976799	Intergenic	CCT5-2P - NIPA2P5	100462982	100874488		       65.97	      113.97	rs7319358-A	rs7319358	0	7319358	Intergenic	1	NR	3E-6	5.522878745280337	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	14q12	14	28663671	Intergenic	EIF4A1P12 - BTF3P2	100462830	283631		       69.76	        9.31	rs1956388-A	rs1956388	0	1956388	Intergenic	1	NR	2E-6	5.698970004336018	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	20q11.21	20	33130847	C20orf71, C20orf70	BPIFB4 - BPIFA2	149954	140683		       19.10	       31.01	rs6059101-A	rs6059101	0	6059101	Intergenic	1	NR	4E-6	5.397940008672037	(Analysis II)	NR	NR	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	6p21.33	6	32111790	MHC	TRNAI25			100189401			rs17207986-G	rs17207986	0	17207986		0	NR	1E-16	16	(Analysis III)	   3.95	[NR] 	Illumina [313,720]	N
08/20/2013	20848476	Haritunians T	11/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20848476	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	9q32	9	114842790	TNFSF15	TNFSF15 - TNFSF8	9966	944		       36.66	       50.55	rs11554257-G	rs11554257	0	11554257	Intergenic	1	NR	1E-6	5.999999999999999	(Analysis III)	   1.82	[NR] 	Illumina [313,720]	N
01/07/2014	21041247	Perlis RH	11/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21041247	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	10q24.1	10	95362484	SORBS1, PDLIM1	SORBS1			10580			rs4918918-T	rs4918918	0	4918918	intron	0	NR	3E-6	5.522878745280337		   1.18	 	Affymetrix [1,922,309] (Imputed)	N
01/07/2014	21041247	Perlis RH	11/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21041247	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	21q22.2	21	39649825	B3GALT5, IGSF5	B3GALT5			10317			rs10854398-C	rs10854398	0	10854398	intron	0	NR	6E-6	5.221848749616356		   1.18	 	Affymetrix [1,922,309] (Imputed)	N
01/07/2014	21041247	Perlis RH	11/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21041247	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	10p11.23	10	30201775	PRKCE	KIAA1462 - EEF1A1P39	57608	100862850		      142.22	      100.05	rs2462021-C	rs2462021	0	2462021	Intergenic	1	NR	8E-6	5.096910013008055		   1.18	 	Affymetrix [1,922,309] (Imputed)	N
01/07/2014	21041247	Perlis RH	11/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/21041247	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	2p21	2	46093955	Intergenic	PRKCE			5581			rs12373805-A	rs12373805	0	12373805	intron	0	NR	9E-6	5.045757490560675		   1.22	 	Affymetrix [1,922,309] (Imputed)	N
01/03/2011	21037568	Enciso-Mora V	10/31/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21037568	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	2p16.1	2	60839531	REL	PAPOLG - LINC01185	64895	400957		       37.45	        8.23	rs1432295-G	rs1432295	0	1432295	Intergenic	1	0.40	2E-8	7.698970004336018		   1.22	[1.14-1.30] 	Illumina [504,374]	N
01/03/2011	21037568	Enciso-Mora V	10/31/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21037568	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	6p21.32	6	32460508	HLA-DRA	TRNAI25			100189401			rs6903608-G	rs6903608	0	6903608		0	0.27	3E-50	49.52287874528033		   1.70	[1.58-1.82] 	Illumina [504,374]	N
01/03/2011	21037568	Enciso-Mora V	10/31/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21037568	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	8q24.21	8	128180025	PVT1	MIR1208 - LINC01263	100302281	101927774		       29.84	      225.24	rs2019960-G	rs2019960	0	2019960	Intergenic	1	0.23	1E-13	13		   1.33	[1.23-1.44] 	Illumina [504,374]	N
01/03/2011	21037568	Enciso-Mora V	10/31/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21037568	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	10p14	10	8051071	GATA3	GATA3;GATA3-AS1			2625;399717			rs501764-C	rs501764	0	501764	intron;ncRNA	0	0.19	7E-8	7.154901959985742		   1.25	[1.15-1.36] 	Illumina [504,374]	N
01/03/2011	21037568	Enciso-Mora V	10/31/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/21037568	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	8q24.21	8	128063586	PVT1	PVT1			5820			rs2608053-G	rs2608053	0	2608053	intron	0	0.52	1E-7	7		   1.20	[1.12-1.28] 	Illumina [504,374]	N
01/03/2011	21037115	Wan ES	10/29/2010	Am J Respir Cell Mol Biol	http://www.ncbi.nlm.nih.gov/pubmed/21037115	Genome-wide association analysis of body mass in chronic obstructive pulmonary disease.	Body mass in chronic obstructive pulmonary disease	2,950 European ancestry cases	502 European ancestry cases	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	0.39	4E-8	7.397940008672037	(BMI)	NR	NR	Illumina [~550,000]	N
12/09/2010	21060860	Gaudet MM	10/28/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21060860	Common genetic variants and modification of penetrance of BRCA2-associated breast cancer.	Breast cancer in BRCA2 mutation carriers	899 European ancestry cases, 804 European ancestry controls	1,264 European ancestry cases, 1,222 European ancestry controls	10q26.13	10	121586602	FGFR2	FGFR2			2263			rs2981575-?	rs2981575	0	2981575	intron	0	0.42	1E-8	8		   1.28	[1.18-1.39] 	Affymetrix [592,163]	N
12/16/2010	21060863	Ikram MK	10/28/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21060863	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	19q13.33	19	48725015	RASIP1, IZUMO1, FUT1, FUT2, CA11, FGF21, FLJ36070	RASIP1			54922			rs2287921-T	rs2287921	0	2287921	intron	0	0.47	2E-25	24.69897000433602	(Retinal venular caliber)	   2.10	[1.71-2.49] um decrease	Affymetrix and Illumina [2,194,468 ] (imputed)	N
12/16/2010	21060863	Ikram MK	10/28/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21060863	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	6q24.1	6	142226962	VTA1, NMBR	VTA1 - GPR126	51534	57211		        6.01	       74.96	rs225717-C	rs225717	0	225717	Intergenic	1	0.23	1E-16	16	(Retinal venular caliber)	   1.90	[1.45-2.35] um decrease	Affymetrix and Illumina [2,194,468 ] (imputed)	N
12/16/2010	21060863	Ikram MK	10/28/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21060863	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	12q24.12	12	111472415	ATXN2, PTPN11, SH2B3	ATXN2			6311			rs10774625-A	rs10774625	0	10774625	intron	0	0.48	2E-13	12.69897000433602	(Retinal venular caliber)	   1.50	[1.11-1.89] um increase	Affymetrix and Illumina [2,194,468 ] (imputed)	N
12/16/2010	21060863	Ikram MK	10/28/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21060863	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	5q14.3	5	88551768	MEF2C	LINC00461			645323			rs17421627-G	rs17421627	0	17421627	intron	0	0.08	7E-16	15.15490195998574	(Retinal venular caliber)	   3.00	[2.27-3.73] um increase	Affymetrix and Illumina [2,194,468 ] (imputed)	N
12/16/2010	21060863	Ikram MK	10/28/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21060863	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	8p23.1	8	11246602	XKR6, PINX1, SOX7, MTMR9, GATA4	RPL17P29 - RPL19P13	100271154	392193		       70.99	        9.39	rs7824557-G	rs7824557	0	7824557	Intergenic	1	0.39	4E-7	6.397940008672037	(Retinal venular caliber)	   1.00	[0.61-1.39] um increase	Affymetrix and Illumina [2,194,468 ] (imputed)	N
01/31/2014	20981099	Kong A	10/28/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20981099	Fine-scale recombination rate differences between sexes, populations and individuals.	Recombination (females)	6,041 European ancestry females	NA	5p14.2	5	23542602	PRDM9	PRDM9 - CDH10	56979	1008		       14.01	      944.50	rs2914276-G	rs2914276	0	2914276	Intergenic	1	0.039	1E-100	100		NR	NR	Illumina [497,256] (Imputed)	N
01/31/2014	20981099	Kong A	10/28/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20981099	Fine-scale recombination rate differences between sexes, populations and individuals.	Recombination (males)	4,389 European ancestry males	NA	5p14.2	5	23542602	PRDM9	PRDM9 - CDH10	56979	1008		       14.01	      944.50	rs2914276-G	rs2914276	0	2914276	Intergenic	1	0.039	1E-50	50		NR	NR	Illumina [497,256] (Imputed)	N
12/16/2010	21082022	Padmanabhan S	10/28/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/21082022	Genome-wide association study of blood pressure extremes identifies variant near UMOD associated with hypertension.	Hypertension	1,621 extreme cases, 1,699 controls	19,845 extreme cases, 16,541 controls	16p12.3	16	20354332	UMOD	UMOD			7369			rs13333226-A	rs13333226	0	13333226	nearGene-5	0	0.81	4E-11	10.39794000867204		   1.15	[1.10-1.19] 	Illumina [521,220] (imputed)	N
12/09/2010	20978177	Penney KL	10/26/2010	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/20978177	Genome-wide association study of prostate cancer mortality.	Prostate cancer mortality	196 European ancestry lethal cases, 368 European ancestry long-term survivor cases	500 European ancestry lethal cases, 155 European ancestry long-term survivor cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [419,613]	N
12/09/2010	20972440	Houlston RS	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972440	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	1q41	1	221872104	DUSP10	DUSP10 - QRSL1P2	11221	100422330		      129.93	      389.73	rs6691170-T	rs6691170	0	6691170	Intergenic	1	NR	1E-9	8.999999999999998		   1.06	[1.03-1.09] 	Illumina [up to ~550,000] (imputed)	N
12/09/2010	20972440	Houlston RS	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972440	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	3q26.2	3	169774313	MYNN	MYNN			55892			rs10936599-C	rs10936599	0	10936599	cds-synon	0	NR	3E-8	7.522878745280337		   1.04	[1.04-1.10] 	Illumina [up to ~550,000] (imputed)	N
12/09/2010	20972440	Houlston RS	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972440	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	12q13.12	12	50761880	DIP2B, ATF1	DIP2B - ATF1	57609	466		       13.21	        2.13	rs11169552-C	rs11169552	0	11169552	Intergenic	1	NR	2E-10	9.698970004336017		   1.09	[1.05-1.11] 	Illumina [up to ~550,000] (imputed)	N
12/09/2010	20972440	Houlston RS	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972440	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	20q13.33	20	62345988	LAMA5	LAMA5			3911			rs4925386-C	rs4925386	0	4925386	intron	0	NR	2E-10	9.698970004336017		   1.08	[1.05-1.10] 	Illumina [up to ~550,000] (imputed)	N
12/09/2010	20972440	Houlston RS	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972440	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	1q41	1	221991606	DUSP10	DUSP10 - QRSL1P2	11221	100422330		      249.43	      270.23	rs6687758-G	rs6687758	0	6687758	Intergenic	1	NR	2E-9	8.698970004336019		   1.09	[1.06-1.12] 	Illumina [up to ~550,000] (imputed)	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	22q13.1	22	38936618	CBX6,APOBEC3A	CBX6 - APOBEC3A	23466	200315		       64.33	       20.90	rs1014971-?	rs1014971	0	1014971	Intergenic	1	0.62	8E-12	11.09691001300806		   1.18	[1.10-1.18] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	19q12	19	29805946	CCNE1	C19orf12 - CCNE1	83636	898		       90.16	        5.95	rs8102137-C	rs8102137	0	8102137	Intergenic	1	0.33	2E-11	10.69897000433602		   1.13	[1.09-1.17] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	2q37.1	2	233656637	UGT1A	UGT1A10;UGT1A8			54575;54576			rs11892031-?	rs11892031	0	11892031	intron;intron	0	0.92	1E-7	7		   1.19	[1.12-1.27] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	8p22	8	18415371	NAT2	NAT2 - PSD3	10	23362		       14.16	      111.93	rs1495741-?	rs1495741	0	1495741	Intergenic	1	0.80	4E-11	10.39794000867204		   1.15	[1.10-1.20] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	8q24.21	8	127705823	MYC	CASC8 - CASC11	727677	100270680		      223.68	       24.51	rs9642880-T	rs9642880	0	9642880	Intergenic	1	0.45	2E-18	17.69897000433602		   1.21	[1.16-1.27] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	8q24.3	8	142680513	PSCA	PSCA			8000			rs2294008-T	rs2294008	0	2294008	intron	0	0.46	4E-11	10.39794000867204		   1.13	[1.09-1.17] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	5p15.33	5	1321972	TERT,CLPTM1L	CLPTM1L			81037			rs401681-C	rs401681	0	401681	intron	0	0.54	5E-7	6.30102999566398		   1.11	[1.07-1.16] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	4p16.3	4	1732512	TMEM129,TACC3,FGFR3	TACC3			10460			rs798766-T	rs798766	0	798766	intron	0	0.19	4E-13	12.39794000867204		   1.20	[1.14-1.26] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	1p13.3			GSTM1	 - 						Deletion assay	NR					0.51	5E-31			   1.47	[1.38-1.57] 	Illumina [589,299]	N
12/08/2010	20972438	Rothman N	10/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20972438	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	3q28	3	189928144	TP63	MIR944 - LEPREL1	100126340	55214		       98.14	       28.58	rs710521-A	rs710521	0	710521	Intergenic	1	0.73	2E-10	9.698970004336017		   1.18	[1.12-1.24] 	Illumina [589,299]	N
12/01/2010	20971583	Ojwang JO	10/22/2010	J Hand Surg Am	http://www.ncbi.nlm.nih.gov/pubmed/20971583	Genome-wide association scan of Dupuytren's disease.	Dupuytren's disease	37 European ancestry cases, 36 European ancestry controls	NA	1q41	1	221443734	LOC100132626	C1orf140 - DUSP10	400804	11221		      107.44	      257.69	rs12032381-C	rs12032381	0	12032381	Intergenic	1	0.083	6E-6	5.221848749616356		   6.22	[2.37-16.31] 	Illumina [251,837]	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry women	NA	1p31.3	1	63015059	ATG4C	ATG4C - LINC00466	84938	199899		      149.79	      144.02	rs17124318-C	rs17124318	0	17124318	Intergenic	1	0.87	6E-7	6.221848749616355		    .07	[0.04-0.10] unit increase	Affymetrix [2,073,674] (imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry women	NA	2q36.1	2	223072020	KCNE4	KCNE4 - TRNAK39P	23704	100189504		       16.38	      249.58	rs1440072-C	rs1440072	0	1440072	Intergenic	1	0.06	4E-6	5.397940008672037		    .06	[0.04-0.08] unit increase	Affymetrix [2,073,674] (imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry women	NA	9q31.2	9	107363530	RAD23B	RAD23B - HMGN2P32	5887	100874473		       31.34	       94.51	rs817858-G	rs817858	0	817858	Intergenic	1	0.13	7E-6	5.154901959985742		    .04	[0.02-0.06] unit increase	Affymetrix [2,073,674] (imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry women	NA	7q21.13	7	88931564	ZNF804B	ZNF804B			219578			rs1406503-C	rs1406503	0	1406503	intron	0	0.05	9E-6	5.045757490560675		    .07	[0.04-0.10] unit increase	Affymetrix [2,073,674] (imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry women	NA	12q23.1	12	99567571	ANKS1B	ANKS1B			56899			rs2373011-C	rs2373011	0	2373011	intron	0	0.42	9E-6	5.045757490560675		    .03	[0.02-0.04] unit increase	Affymetrix [2,073,674] (imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry women	NA	17q25.3	17	77705615	SEPT9	MIR4316 - FLJ45079	100422851	400624		      308.56	      173.39	rs9906155-T	rs9906155	0	9906155	Intergenic	1	0.91	9E-6	5.045757490560675		    .05	[0.02-0.07] unit increase	Affymetrix [2,073,674] (imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry women	NA	2p21	2	46598887	PIGF, CRIPT	PIGF			5281			rs17818399-C	rs17818399	0	17818399	intron	0	0.17	3E-7	6.522878745280337		   1.13	[0.70-1.56] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry women	NA	4q32.2	4	161681057	FSTL5	FSTL5			56884			rs17638464-G	rs17638464	0	17638464	intron	0	0.83	2E-6	5.698970004336018		   1.38	[0.81-1.95] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry women	NA	2q33.2	2	203300448	CYP20A1	CYP20A1			57404			rs11888559-T	rs11888559	0	11888559	UTR-3	0	0.15	2E-6	5.698970004336018		   1.05	[0.62-1.48] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry women	NA	1q23.3	1	164769934	PBX1	PBX1;LOC100505795			5087;100505795			rs6670655-T	rs6670655	0	6670655	intron;ncRNA	0	0.18	3E-6	5.522878745280337		   1.26	[0.74-1.78] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry women	NA	12q23.1	12	96085489	LTA4H	TRNAD12 - ELK3	100189239	2004		       49.40	      108.91	rs2660869-C	rs2660869	0	2660869	Intergenic	1	0.02	3E-6	5.522878745280337		   4.39	[2.55-6.23] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry women	NA	2q33.3	2	206769512	FASTKD2	FASTKD2			22868			rs2277912-G	rs2277912	0	2277912	intron	0	0.15	5E-6	5.301029995663981		   1.07	[0.62-1.52] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry women	NA	7q21.11	7	78335471	RPL13AP17	MAGI2			9863			rs2691543-T	rs2691543	0	2691543	intron	0	0.97	5E-6	5.301029995663981		   3.45	[1.97-4.93] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	2q36.1	2	223072020	KCNE4	KCNE4 - TRNAK39P	23704	100189504		       16.38	      249.58	rs1440072-C	rs1440072	0	1440072	Intergenic	1	0.06	8E-7	6.096910013008056		   3.66	[2.21-5.11] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	12q23.1	12	99567571	ANKS1B	ANKS1B			56899			rs2373011-C	rs2373011	0	2373011	intron	0	0.42	2E-6	5.698970004336018		   1.71	[1.00-2.42] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	3q28	3	190534846	IL1RAP	IL1RAP			3556			rs9290936-G	rs9290936	0	9290936	intron	0	0.61	4E-6	5.397940008672037		   1.79	[1.03-2.55] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	16q24.1	16	84651903	KLHL36	KLHL36			79786			rs11647936-A	rs11647936	0	11647936	intron	0	0.77	4E-6	5.397940008672037		   2.29	 [1.32-3.26 cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	5q35.1	5	169472983	CCDC99	MIR585 - SPDL1	693170	54908		      209.29	      110.65	rs13156607-T	rs13156607	0	13156607	Intergenic	1	0.11	5E-6	5.301029995663981		   3.91	[2.24-5.58] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	12q14.1	12	62610803	PPM1H	MIRLET7I - PPM1H	406891	57460		        7.03	       33.18	rs7302017-G	rs7302017	0	7302017	Intergenic	1	0.46	5E-6	5.301029995663981		   1.71	[0.97-2.45] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	5q34	5	165950694	Intergenic	RPL21P59 - RPL7P20	100271174	728843		       45.06	       77.79	rs9313296-C	rs9313296	0	9313296	Intergenic	1	0.01	6E-6	5.221848749616356		   9.40	[5.35-13.45] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry women	NA	15q21.1	15	45692873	SQRDL	SQRDL - SEMA6D	58472	80031		        1.58	     1491.33	rs12594515-C	rs12594515	0	12594515	Intergenic	1	0.69	7E-6	5.154901959985742		   1.73	[0.98-2.48] cm increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry women	NA	5q34	5	165950694	Intergenic	RPL21P59 - RPL7P20	100271174	728843		       45.06	       77.79	rs9313296-C	rs9313296	0	9313296	Intergenic	1	0.01	7E-7	6.154901959985743		  10.00	[6.07-13.93] kg increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry women	NA	4p15.2	4	25401644	ANAPC4	ANAPC4			29945			rs16877106-C	rs16877106	0	16877106	intron	0	0.96	1E-6	5.999999999999999		   5.42	[3.22-7.62] kg increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry women	NA	8q24.13	8	121950976	Intergenic	HAS2-AS1 - MRPS36P3	594842	347704		      305.65	      140.49	rs907121-C	rs907121	0	907121	Intergenic	1	0.57	2E-6	5.698970004336018		   1.83	[1.08-2.58] kg increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry women	NA	1p31.3	1	63015059	ATG4C	ATG4C - LINC00466	84938	199899		      149.79	      144.02	rs17124318-C	rs17124318	0	17124318	Intergenic	1	0.87	4E-6	5.397940008672037		   3.98	[2.30-5.66] kg increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry women	NA	12q23.1	12	96414139	C12orf55	CDK17 - C12orf55	5128	144535		       13.55	       75.44	rs11108495-T	rs11108495	0	11108495	Intergenic	1	0.45	4E-6	5.397940008672037		   1.55	[0.89-2.21] kg increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry women	NA	10q21.1	10	55031209	PCDH15	MIR548F1 - MTRNR2L5	100302192	100463289		      423.25	      567.78	rs10740609-T	rs10740609	0	10740609	Intergenic	1	0.07	5E-6	5.301029995663981		   3.41	[1.94-4.87] kg increase	Affymetrix [2,073,674](imputed)	N
12/03/2010	20966902	Croteau-Chonka DC	10/21/2010	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/20966902	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry women	NA	15q21.1	15	45692873	SQRDL	SQRDL - SEMA6D	58472	80031		        1.58	     1491.33	rs12594515-C	rs12594515	0	12594515	Intergenic	1	0.69	5E-6	5.301029995663981		   1.71	[0.98-2.44] kg increase	Affymetrix [2,073,674](imputed)	N
12/01/2010	20953188	Ellinghaus E	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953188	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls	5q33.3	5	159332892	IL12B	LOC285626			285626			rs2546890-A	rs2546890	0	2546890	ncRNA	0	0.56	1E-20	20		   1.54	[1.32-1.79] 	Illumina [2,339,118] (imputed)	N
12/01/2010	20953188	Ellinghaus E	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953188	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls	6q21	6	111592059	TRAF3IP2	TRAF3IP2;TRAF3IP2-AS1			10758;643749			rs33980500-T	rs33980500	0	33980500	missense;intron	0	0.08	1E-16	16		NR	NR	Illumina [2,339,118] (imputed)	N
12/01/2010	20953188	Ellinghaus E	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953188	Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2.	Psoriasis	472 European ancestry cases, 1,146 European ancestry controls	2,668, European ancestry cases, 762 French Canadian founder population cases, 2,585 cases, 3,485 European ancestry controls, 994 French Canadian founder population controls, 2,412 controls	6p21.33	6	31285148	HLA-C	TRNAI25			100189401			rs12191877-?	rs12191877	0	12191877		0	NR	4E-32	31.39794000867204		   2.79	[2.35-3.33] 	Illumina [2,339,118] (imputed)	N
11/30/2010	20953186	Huffmeier U	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953186	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6p21.33	6	31273332	HLA-C	HLA-C			3107			rs13191343-T	rs13191343	0	13191343	nearGene-5	0	0.13	2E-72	71.698970004336		   2.37	[2.16-2.61] 	Affymetrix [1,585,307] (imputed)	N
11/30/2010	20953186	Huffmeier U	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953186	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	5q33.3	5	159402519	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		       84.35	      514.21	rs12188300-T	rs12188300	0	12188300	Intergenic	1	0.08	7E-17	16.15490195998574		   1.70	[1.50-1.93] 	Affymetrix [1,585,307] (imputed)	N
11/30/2010	20953186	Huffmeier U	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953186	Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis.	Psoriatic arthritis	572 European ancestry cases, 888 European ancestry controls	Up to 1,761 European ancestry cases, 3,727 European ancestry controls	6q21	6	111592059	TRAF3IP2	TRAF3IP2;TRAF3IP2-AS1			10758;643749			rs33980500-T	rs33980500	0	33980500	missense;intron	0	0.07	1E-20	20		   1.95	[1.69-2.24] 	Affymetrix [1,585,307] (imputed)	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	1p36.11	1	24193430	IL28RA	IFNLR1 - GRHL3	163702	57822		        6.16	      125.89	rs4649203-A	rs4649203	0	4649203	Intergenic	1	0.73	7E-8	7.154901959985742		   1.13	[1.05-1.22] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	2p16.1	2	60854407	REL	LINC01185			400957			rs702873-G	rs702873	0	702873	intron	0	0.56	4E-9	8.397940008672036		   1.12	[1.04-1.20] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	2q24.2	2	162404181	IFIH1	KCNH7			90134			rs17716942-A	rs17716942	0	17716942	intron	0	0.86	1E-13	13		   1.29	[1.17-1.43] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	3p24.3	3	18742931	Intergenic	RAD23BP1 - KCNH8	131185	131096		      203.04	      405.52	rs6809854-G	rs6809854	0	6809854	Intergenic	1	0.19	1E-7	7		   1.14	[1.04-1.26] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	5q15	5	96766240	ERAP1	CAST;ERAP1			831;51752			rs27524-A	rs27524	0	27524	intron;intron	0	0.36	3E-11	10.52287874528034		   1.13	[1.05-1.22] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6q21	6	111352511	TRAF3IP2	REV3L			5980			rs240993-A	rs240993	0	240993	intron	0	0.25	5E-20	19.30102999566398		   1.25	[1.16-1.34] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	14q13.2	14	35363460	NFKBIA	PSMA6 - RPLP0P3	5687	122589		       45.98	       24.60	rs8016947-C	rs8016947	0	8016947	Intergenic	1	0.57	2E-11	10.69897000433602		   1.19	[1.11-1.27] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	19p13.2	19	10359299	TYK2	TYK2			7297			rs12720356-A	rs12720356	0	12720356	missense	0	0.90	4E-11	10.39794000867204		   1.40	[1.23-1.61] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6q21[rs458017]; 6q21[rs465969]			TRAF3IP2	 - 						rs458017-G	rs458017,rs465969					0.06	2E-16			   1.37	[1.22-1.54] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	19p13.2	19	10362257	TYK2	TYK2			7297			rs280519-A	rs280519	0	280519	intron	0	0.47	4E-9	8.397940008672036		   1.13	[1.05-1.21] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-?	rs11209026	0	11209026	missense	0	NR	7E-7	6.154901959985743		   1.49	[1.27-1.74] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	1q21.3	1	152578800	LCE3D	LCE3E - LCE3D	353145	84648		       12.05	         .58	rs4112788-?	rs4112788	0	4112788	Intergenic	1	NR	3E-10	9.522878745280336		   1.29	[1.19-1.40] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	5q33.3	5	159323761	IL12B	IL12B			3593			rs3213094-?	rs3213094	0	3213094	intron	0	NR	5E-11	10.30102999566398		   1.39	[1.26-1.53] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6p21.33	6	31306778	HLA-C	TRNAI25			100189401			rs10484554-?	rs10484554	0	10484554		0	NR	4E-214	213.397940008672		   4.66	[4.23-5.13] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	6q23.3	6	137878280	TNFAIP3	TNFAIP3			7128			rs610604-?	rs610604	0	610604	intron	0	NR	7E-7	6.154901959985743		   1.22	[1.13-1.32] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	12q13.3	12	56344189	IL23A	STAT2			6773			rs2066808-?	rs2066808	0	2066808	intron	0	NR	2E-7	6.698970004336019		   1.49	[1.28-1.73] 	Illumina [535,475]	N
01/18/2011	20953190	Strange A	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953190	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	20q13.13[rs2235617]; 20q13.13[rs495337]			ZNF313	 - 						rs2235617-?	rs2235617,rs495337					NR	2E-6			   1.20	[1.11-1.30] 	Illumina [535,475]	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	17q11.2	17	27779649	NOS2	NOS2			4843			rs4795067-G	rs4795067	0	4795067	intron	0	0.35	4E-11	10.39794000867204		   1.19	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	16p11.2	16	30931304	FBXL19,POL3S	FBXL19			54620			rs10782001-G	rs10782001	0	10782001	intron	0	0.37	9E-10	9.045757490560675		   1.16	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	14q13.2	14	35212966	NFKBIA, PSMA6	KIAA0391			9692			rs12586317-T	rs12586317	0	12586317	intron	0	0.75	2E-8	7.698970004336018		   1.15	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	20q13.13	20	49905793	RNF114,SPATA2,SLC9A8,SNAI1	SPATA2			9825			rs495337-G	rs495337	0	495337	cds-synon	0	0.57	2E-7	6.698970004336019		   1.21	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	12q13.2	12	56045425	RPS26	RPS26 - ERBB3	6231	2065		        1.20	       34.60	rs12580100-A	rs12580100	0	12580100	Intergenic	1	0.90	1E-6	5.999999999999999		   1.17	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	20q13.12	20	45352086	SDC4	SDC4 - SYS1	6385	90196		        3.66	        9.85	rs1008953-C	rs1008953	0	1008953	Intergenic	1	0.79	1E-7	7		   1.14	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	17p11.2	17	22180454	NR	NCOR1P2 - UBBP4	729490	23666		      109.85	       23.20	rs1975974-G	rs1975974	0	1975974	Intergenic	1	0.23	1E-7	7		   1.17	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
12/01/2010	20953189	Stuart PE	10/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20953189	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	2p16.1	2	60864815	NR	LINC01185			400957			rs842636-G	rs842636	0	842636	intron	0	0.56	6E-6	5.221848749616356		   1.15	[NR] 	Illumina & Perlegen [up to 7,456,344] (imputed)	N
11/24/2010	20947153	Ueta M	10/12/2010	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/20947153	Association between prostaglandin E receptor 3 polymorphisms and Stevens-Johnson syndrome identified by means of a genome-wide association study.	Stevens-Johnson syndrome	60 Japanese ancestry cases, 300 Japanese ancestry controls	40 cases, 608 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [313,924]	N
11/23/2010	20939080	Greenbaum L	10/11/2010	Mov Disord	http://www.ncbi.nlm.nih.gov/pubmed/20939080	Evidence for association of the GLI2 gene with tardive dyskinesia in patients with chronic schizophrenia.	Tardive dyskinesia in schizophrenia	88 European ancestry cases, 40 African American cases, 3 cases, 129 European ancestry controls, 62 African American controls, 5 controls	44 Ashkenazi Jewish Israeli cases, 33 Jewish Israeli cases, 52 Ashkenazi Jewish Israeli controls, 41 Jewish Israeli controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Perlegen [495,172]	N
11/17/2010	20935629	Heid IM	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935629	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	7p15.2	7	25831489	NFE2L3	LOC100506236			100506236			rs1055144-T	rs1055144	0	1055144	ncRNA	0	0.21	1E-24	24		    .04	[NR] unit increase	Affymetrix, Illumina & Perlegen [up to 2,850,269](imputed)	N
11/17/2010	20935629	Heid IM	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935629	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	3p21.1	3	52472410	NISCH, STAB1	NISCH			11188			rs6784615-T	rs6784615	0	6784615	intron	0	0.94	4E-10	9.397940008672037		    .04	[NR] unit increase	Affymetrix, Illumina & Perlegen [up to 2,850,269](imputed)	N
11/17/2010	20935629	Heid IM	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935629	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	5q35.2	5	173935455	CPEB4	CPEB4			80315			rs6861681-A	rs6861681	0	6861681	intron	0	0.34	2E-9	8.698970004336019		    .02	[NR] unit increase	Affymetrix, Illumina & Perlegen [up to 2,850,269](imputed)	N
11/17/2010	20935629	Heid IM	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935629	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	10p11.22	10	31701695	ZEB1	GLUD1P5 - ARHGAP12	2751	94134		       83.49	      103.70	rs7081678-A	rs7081678	0	7081678	Intergenic	1	0.09	6E-6	5.221848749616356		    .03	[NR] unit increase	Affymetrix, Illumina & Perlegen [up to 2,850,269](imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16q12.2	16	53769662	FTO	FTO			79068			rs1558902-A	rs1558902	0	1558902	intron	0	0.42	5E-120	119.301029995664		    .39	[0.35-0.43] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2p25.3	2	622827	TMEM18	FAM150B - TMEM18	285016	129787		      333.96	       45.15	rs2867125-C	rs2867125	0	2867125	Intergenic	1	0.83	3E-49	48.52287874528034		    .31	[0.25-0.37] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	18q21.32	18	60172536	MC4R	RPS3AP49 - MC4R	400652	4160		       22.13	      198.80	rs571312-A	rs571312	0	571312	Intergenic	1	0.24	6E-42	41.22184874961635		    .23	[0.17-0.29] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	4p12	4	45180510	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      235.51	      142.74	rs10938397-G	rs10938397	0	10938397	Intergenic	1	0.43	4E-31	30.39794000867203		    .18	[0.14-0.22] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	11p14.1	11	27704439	BDNF	BDNF			627			rs10767664-A	rs10767664	0	10767664	intron	0	0.78	5E-26	25.30102999566398		    .19	[0.13-0.25] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1p31.1	1	72346757	NEGR1	RPL31P12 - KRT8P21	100270887	126811		       44.89	      758.02	rs2815752-A	rs2815752	0	2815752	Intergenic	1	0.61	2E-22	21.69897000433602		    .13	[0.09-0.17] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16p11.2	16	28874338	SH2B1, APOB48R, SULT1A2, AC138894.2, ATXN2L, TUFM	SH2B1			25970			rs7359397-T	rs7359397	0	7359397	nearGene-3	0	0.40	2E-20	19.69897000433602		    .15	[0.11-0.19] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	3q27.2	3	186116710	ETV5	ETV5 - DGKG	2119	1608		        7.60	       30.49	rs9816226-T	rs9816226	0	9816226	Intergenic	1	0.82	2E-18	17.69897000433602		    .14	[0.08-0.20] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	11p11.2	11	47629441	MTCH2, NDUFS3, CUGBP1	MTCH2			23788			rs3817334-T	rs3817334	0	3817334	intron	0	0.41	2E-12	11.69897000433602		    .06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	19q13.11	19	33818627	KCTD15	KCTD15 - RPS4XP20	79047	100271386		        2.87	      203.94	rs29941-G	rs29941	0	29941	Intergenic	1	0.67	3E-9	8.522878745280337		    .06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1q25.2	1	177920345	SEC16B	BRINP2 - SEC16B	57795	89866		      637.92	        8.76	rs543874-G	rs543874	0	543874	Intergenic	1	0.19	4E-23	22.39794000867203		    .22	[0.16-0.28] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	6p12.3	6	50835337	TFAP2B	TFAP2B			7021			rs987237-G	rs987237	0	987237	intron	0	0.18	3E-20	19.52287874528034		    .13	[0.07-0.19] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	12q13.12	12	49853685	FAIM2	BCDIN3D - RPL35AP28	144233	100271637		       10.56	        9.42	rs7138803-A	rs7138803	0	7138803	Intergenic	1	0.38	2E-17	16.69897000433602		    .12	[0.08-0.16] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	14q31.1	14	79470621	NRXN3	NRXN3			9369			rs10150332-C	rs10150332	0	10150332	intron	0	0.21	3E-11	10.52287874528034		    .13	[0.07-0.19] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2p23.3	2	24935139	RBJ, ADCY3, POMC	ADCY3 - DNAJC27	109	51277		       15.41	        8.50	rs713586-C	rs713586	0	713586	Intergenic	1	0.47	6E-22	21.22184874961636		    .14	[0.10-0.18] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16p12.3	16	19922278	GPRC5B, IQCK	GPRC5B - GPR139	51704	124274		       36.23	      109.38	rs12444979-C	rs12444979	0	12444979	Intergenic	1	0.87	3E-21	20.52287874528034		    .17	[0.11-0.23] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	15q23	15	67794500	MAP2K5, LBXCOR1	MAP2K5			5607			rs2241423-G	rs2241423	0	2241423	intron	0	0.78	1E-18	18		    .13	[0.09-0.17] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	19q13.32	19	45698914	QPCTL, GIPR	QPCTL			54814			rs2287019-C	rs2287019	0	2287019	intron	0	0.80	2E-16	15.69897000433602		    .15	[0.09-0.21] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1p31.1	1	74525960	TNNI3K	TNNI3K;FPGT-TNNI3K			51086;100526835			rs1514175-A	rs1514175	0	1514175	intron;intron	0	0.43	8E-14	13.09691001300805		    .07	[0.03-0.11] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	4q24	4	102267552	SLC39A8	SLC39A8			64116			rs13107325-T	rs13107325	0	13107325	missense	0	0.07	2E-13	12.69897000433602		    .19	[0.11-0.27] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	5q13.3	5	75719417	FLJ35779, HMGCR	POC5			134359			rs2112347-T	rs2112347	0	2112347	nearGene-5	0	0.63	2E-13	12.69897000433602		    .10	[0.06-0.14] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	9p21.1	9	28414341	LRRN6C	LINGO2			158038			rs10968576-G	rs10968576	0	10968576	intron	0	0.31	3E-13	12.52287874528034		    .11	[0.07-0.15] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	19q13.32	19	47065746	TMEM160, ZC3H4	ZC3H4			23211			rs3810291-A	rs3810291	0	3810291	UTR-3	0	0.67	2E-12	11.69897000433602		    .09	[0.05-0.13] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2p16.1	2	59075742	FANCL	LINC01122 - RNA5SP94	400955	100873327		       11.98	      619.02	rs887912-T	rs887912	0	887912	Intergenic	1	0.29	2E-12	11.69897000433602		    .10	[0.06-0.14] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	3p12.1	3	85835000	CADM2	CADM2			253559			rs13078807-G	rs13078807	0	13078807	intron	0	0.20	4E-11	10.39794000867204		    .10	[0.06-0.14] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	14q12	14	30045906	PRKD1	PRKD1 - RPS6P24	5587	100128358		      118.21	        9.26	rs11847697-T	rs11847697	0	11847697	Intergenic	1	0.04	6E-11	10.22184874961635		    .17	[0.07-0.27] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2q22.2	2	142202362	LRP1B	RPS16P3 - KYNU	100271067	8942		      993.93	      675.26	rs2890652-C	rs2890652	0	2890652	Intergenic	1	0.18	1E-10	10		    .09	[0.03-0.15] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1p21.3	1	96479241	PTBP2	EEF1A1P11 - NDUFS5P2	440595	100286918		       30.62	      105.17	rs1555543-C	rs1555543	0	1555543	Intergenic	1	0.59	4E-10	9.397940008672037		    .06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	13q12.2	13	27446043	MTIF3, GTF3A	MTIF3			219402			rs4771122-G	rs4771122	0	4771122	intron	0	0.24	9E-10	9.045757490560675		    .09	[0.03-0.15] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	5q23.2	5	124996410	ZNF608	RPL28P3 - HMGB1P22	391828	644659		      187.18	      268.85	rs4836133-A	rs4836133	0	4836133	Intergenic	1	0.48	2E-9	8.698970004336019		    .07	[0.03-0.11] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	11p15.4	11	8583046	RPL27A, TUB	STK33			65975			rs4929949-C	rs4929949	0	4929949	intron	0	0.52	3E-9	8.522878745280337		    .06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	6p21.31	6	34335092	NUDT3, HMGA1	NUDT3;RPS10-NUDT3			11165;100529239			rs206936-G	rs206936	0	206936	intron;intron	0	0.21	3E-8	7.522878745280337		    .06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	8q21.11	8	75661476	HNF4G	HNF4G - LINC01111	3174	101926978		       94.63	      745.18	rs2922763-T	rs2922763	0	2922763	Intergenic	1	0.71	6E-8	7.221848749616355		NR	NR	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16p13.3	16	3988386	ADCY9	ADCY9			115			rs2444217-A	rs2444217	0	2444217	intron	0	0.57	9E-8	7.045757490560674		NR	NR	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	9q33.3	9	126703046	LMX1B	LMX1B - ZBTB43	4010	23099		        2.01	      101.96	rs867559-G	rs867559	0	867559	Intergenic	1	0.22	1E-7	7		NR	NR	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	17q21.32	17	48046570	CBX1	NFE2L1;LOC102724556			4779;102724556			rs3764400-C	rs3764400	0	3764400	nearGene-5;intron	0	0.14	4E-7	6.397940008672037		NR	NR	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	5q12.1	5	63522073	HTR1A	ISCA1P1 - HTR1A	389293	3350		      744.73	      437.98	rs255414-A	rs255414	0	255414	Intergenic	1	0.81	1E-6	5.999999999999999		NR	NR	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/17/2010	20935630	Speliotes EK	10/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20935630	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	7q11.23	7	77010554	KIAA1505	DTX2P1-UPK3BP1-PMS2P11			441263			rs6955651-T	rs6955651	0	6955651	intron	0	0.18	2E-6	5.698970004336018		NR	NR	Affymetrix, Illumina and Perlegen [~2.8 million] (imputed)	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	15q21.2	15	51223858	CYP19A1	CYP19A1			1588			rs2899472-A	rs2899472	0	2899472	intron	0	NR	2E-9	8.698970004336019	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	1p32.2	1	56385014	Intergenic	RPSAP20 - PPAP2B	127406	8613		      176.52	      109.73	rs11206801-A	rs11206801	0	11206801	Intergenic	1	NR	6E-8	7.221848749616355	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	19q13.32	19	44892362	TOMM40	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	NR	3E-7	6.522878745280337	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	12q14.3	12	65767191	Intergenic	RPSAP52			204010			rs10784496-G	rs10784496	0	10784496	intron	0	NR	3E-7	6.522878745280337	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	7q32.3	7	131603231	Intergenic	RPL31P36 - RPS14P10	100271200	647034		       82.69	       62.35	rs12534221-A	rs12534221	0	12534221	Intergenic	1	NR	9E-7	6.045757490560675	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	6q13	6	71429869	Intergenic	LOC102724000			102724000			rs1727638-A	rs1727638	0	1727638	intron	0	NR	1E-6	5.999999999999999	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	21q21.3	21	27324157	Intergenic	GPX1P2 - EIF4A1P1	2884	54052		      180.16	       42.86	rs239713-T	rs239713	0	239713	Intergenic	1	NR	5E-7	6.30102999566398	(AD)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	18q22.3	18	73391387	Intergenic	MIR548AV - FBXO15	100847083	201456		      538.01	      681.87	rs1943816-C	rs1943816	0	1943816	Intergenic	1	NR	1E-7	7	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	2q24.1	2	158121282	UPP2	UPP2			151531			rs2074955-C	rs2074955	0	2074955	intron	0	NR	1E-7	7	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	2q36.3	2	226697423	Intergenic	MIR5702 - IRS1	100847053	3667		       38.63	       33.89	rs7558386-G	rs7558386	0	7558386	Intergenic	1	NR	1E-7	7	(MCI)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	3p22.2	3	37193098	Intergenic	UBE2FP1 - RPS16P4	100421436	100271068		       48.92	        3.14	rs7631605-T	rs7631605	0	7631605	Intergenic	1	NR	1E-6	5.999999999999999	(MCI)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	4q22.3	4	95238666	UNC5C	UNC5C			8633			rs12643654-G	rs12643654	0	12643654	intron	0	NR	5E-7	6.30102999566398	(AD)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	12q24.23	12	118950113	Intergenic	RNA5SP374 - SRRM4	100873632	84530		      120.31	       31.38	rs1997111-T	rs1997111	0	1997111	Intergenic	1	NR	1E-8	8	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	2q14.2	2	119087741	Intergenic	MARCO - C1QL2	8685	165257		       93.08	       68.50	rs17189298-A	rs17189298	0	17189298	Intergenic	1	NR	3E-7	6.522878745280337	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	8q23.1	8	108617674	Intergenic	EMC2 - TMEM74	9694	157753		      130.77	      161.26	rs2935776-C	rs2935776	0	2935776	Intergenic	1	NR	6E-7	6.221848749616355	(Controls)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	22q12.3	22	32349929	Intergenic	SLC5A4			6527			rs5998432-T	rs5998432	0	5998432	intron	0	NR	9E-7	6.045757490560675	(MCI)	NR	NR	Illumina [498,205]	N
11/23/2010	20932310	Han MR	10/08/2010	BMC Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20932310	Genome-wide association reveals genetic effects on human A&#x003b2;42 and &#x003c4; protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	20q13.33	20	61371988	CDH4	CDH4			1002			rs4925189-G	rs4925189	0	4925189	intron	0	NR	6E-7	6.221848749616355	(AD)	NR	NR	Illumina [498,205]	N
11/15/2010	20887962	Jee SH	10/08/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20887962	Adiponectin concentrations: a genome-wide association study.	Adiponectin levels	4,001 Korean ancestry individuals	2,304 Korean ancestry individuals	16q23.3	16	82617112	CDH13	MPHOSPH6 - CDH13	10200	1012		      446.89	        9.68	rs3865188-?	rs3865188	0	3865188	Intergenic	1	0.30	3E-83	82.52287874528034		    .09	[NR] ug/ml decrease	Affymetrix [up to 354,357]	N
11/05/2010	20921969	Aberg K	10/05/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20921969	Genome-wide association study of antipsychotic-induced QTc interval prolongation.	Antipsychotic-induced QTc interval prolongation	738 Schizophrenia cases of European, African American, Hispanic, or other ancestry	NA	6p25.2	6	3359103	SLC22A23	SLC22A23			63027			rs4959235-?	rs4959235	0	4959235	intron	0	NR	2E-7	6.698970004336019	(Quetiapine)	NR	NR	Affymetrix [492,000]	N
11/05/2010	20921969	Aberg K	10/05/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20921969	Genome-wide association study of antipsychotic-induced QTc interval prolongation.	Antipsychotic-induced QTc interval prolongation	738 Schizophrenia cases of European, African American, Hispanic, or other ancestry	NA	1p31.1	1	70455490	Intergenic	CTH - CASP3P1	1491	100131616		       15.64	      205.16	rs10458561-?	rs10458561	0	10458561	Intergenic	1	NR	4E-7	6.397940008672037	(Risperidone)	NR	NR	Affymetrix [492,000]	N
11/05/2010	20921969	Aberg K	10/05/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20921969	Genome-wide association study of antipsychotic-induced QTc interval prolongation.	Antipsychotic-induced QTc interval prolongation	738 Schizophrenia cases of European, African American, Hispanic, or other ancestry	NA	8q22.1	8	97317537	Intergenic	LOC101927066			101927066			rs6468544-?	rs6468544	0	6468544	intron	0	NR	8E-7	6.096910013008056	(Risperidone)	NR	NR	Affymetrix [492,000]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p16.3	2	48974189	FSHR	FSHR			2492			rs2268363-?	rs2268363	0	2268363	intron	0	0.18	5E-8	7.30102999566398		   7.03	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p21	2	47012873	TTC7A	TTC7A			57217			rs10194115-?	rs10194115	0	10194115	intron	0	0.07	5E-7	6.30102999566398		   9.00	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	1p13.1	1	116927159	PTGFRN	PTGFRN			5738			rs2806864-?	rs2806864	0	2806864	intron	0	0.15	6E-7	6.221848749616355		   6.42	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xq11.2	23	65147139	KIAA1166	ZC4H2 - CCT4P2	55906	100131638		      112.40	      123.77	rs7064929-?	rs7064929	0	7064929	Intergenic	1	0.17	7E-7	6.154901959985743		  13.65	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	12q23.3	12	108373556	CMKLR1	CMKLR1 - FICD	1240	11153		       34.24	      141.72	rs10861905-?	rs10861905	0	10861905	Intergenic	1	0.01	8E-7	6.096910013008056		  33.95	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2q14.3	2	122533446	TSN	TSN - CNTNAP5	7247	129684		      765.59	     1491.84	rs1527243-?	rs1527243	0	1527243	Intergenic	1	0.43	1E-6	5.999999999999999		   6.67	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	9p13.3	9	33283584	CHMP5	CHMP5 - NFX1	51510	4799		        1.52	        6.84	rs12336160-?	rs12336160	0	12336160	Intergenic	1	0.09	1E-6	5.999999999999999		   7.26	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p22.1	2	39720581	TMEM178	TMEM178A - THUMPD2	130733	80745		        2.62	       15.48	rs2716734-?	rs2716734	0	2716734	Intergenic	1	0.14	2E-6	5.698970004336018		   5.97	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2q22.1	2	141038051	LRP1B	LRP1B			53353			rs10210358-?	rs10210358	0	10210358	intron	0	0.31	2E-6	5.698970004336018		   5.34	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	1p36.13	1	17967993	IGSF21	ACTL8 - IGSF21	81569	84966		      140.93	      139.75	rs16861326-?	rs16861326	0	16861326	Intergenic	1	0.02	2E-6	5.698970004336018		  17.85	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp22.11	23	22873960	DDX53	LOC100873065			100873065			rs5925696-?	rs5925696	0	5925696	intron	0	0.26	3E-6	5.522878745280337		  12.52	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p22.2	2	38050689	FAM82A1	RMDN2			151393			rs6741148-?	rs6741148	0	6741148	intron	0	0.33	4E-6	5.397940008672037		   5.20	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	9q22.32	9	94978992	C9orf3	C9orf3			84909			rs3802458-?	rs3802458	0	3802458	intron	0	0.04	4E-6	5.397940008672037		  10.53	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	5q23.2	5	125030274	ZNF608	RPL28P3 - HMGB1P22	391828	644659		      221.04	      234.99	rs6862844-?	rs6862844	0	6862844	Intergenic	1	0.09	4E-6	5.397940008672037		   6.72	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	1p36.21	1	15465931	ELA2A	CELA2A			63036			rs2901964-?	rs2901964	0	2901964	intron	0	0.37	5E-6	5.301029995663981		   5.26	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2q14.2	2	120943713	GLI2	GLI2			2736			rs11122834-?	rs11122834	0	11122834	intron	0	0.29	5E-6	5.301029995663981		   4.93	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2q11.2	2	96835063	CNNM3	CNNM3			26505			rs9948-?	rs9948	0	9948	UTR-3	0	0.31	6E-6	5.221848749616356		   4.90	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xq12	23	66386851	HEPH	HEPH - GPR165P	9843	392486		      119.46	       51.12	rs5965182-?	rs5965182	0	5965182	Intergenic	1	0.12	6E-6	5.221848749616356		  11.73	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp21.3	23	25835497	MAGEB18	RPP40P1 - MAGEB18	100874225	286514		      243.68	      302.85	rs5944185-?	rs5944185	0	5944185	Intergenic	1	0.16	7E-6	5.154901959985742		  10.50	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p24.1	2	21354871	APOB	TDRD15 - RNA5SP87	100129278	100873320		      216.89	      984.02	rs219553-?	rs219553	0	219553	Intergenic	1	0.42	7E-6	5.154901959985742		   5.56	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	20p11.21	20	24077771	GGTLC1	POM121L3P - FLJ33581	651452	400839		       87.32	      122.00	rs6049375-?	rs6049375	0	6049375	Intergenic	1	0.28	8E-6	5.096910013008055		   4.84	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp21.3	23	28214936	WDR42B	DCAF8L1 - MIR6134	139425	102465140		      233.49	      280.62	rs5971305-?	rs5971305	0	5971305	Intergenic	1	0.02	8E-6	5.096910013008055		  33.69	[NR] 	Affymetrix [512,497]	N
11/15/2010	20932654	Kerns SL	10/05/2010	Int J Radiat Oncol Biol Phys	http://www.ncbi.nlm.nih.gov/pubmed/20932654	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	Xp11.4	23	37995474	SYTL5	CXorf27 - SYTL5	25763	94122		        4.16	       11.11	rs872690-?	rs872690	0	872690	Intergenic	1	0.03	9E-6	5.045757490560675		  11.78	[NR] 	Affymetrix [512,497]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	8q22.1	8	95114802	PLEKHF2	MIR3150A - PLEKHF2	100422964	79666		       41.81	       18.92	rs7000734-?	rs7000734	0	7000734	Intergenic	1	0.08	4E-7	6.397940008672037		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	6p12.1	6	54400598	TINAG	TRNAI25			100189401			rs16885294-?	rs16885294	0	16885294		0	0.07	4E-7	6.397940008672037		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	16q23.1	16	78597897	WWOX	WWOX			51741			rs2859631-?	rs2859631	0	2859631	intron	0	0.07	1E-6	5.999999999999999		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	6p22.3	6	24544739	KIAA0319	KIAA0319			9856			rs16889440-?	rs16889440	0	16889440	UTR-3	0	0.18	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	1q43	1	241715245	WDR64	WDR64			128025			rs12569163-?	rs12569163	0	12569163	intron	0	0.12	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	9p24.1	9	6849317	KDM4C	KDM4C			23081			rs4742269-?	rs4742269	0	4742269	intron	0	0.14	5E-6	5.301029995663981		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	2p16.3	2	48950462	FSHR	CTBP2P5 - FSHR	646936	2492		       33.88	       11.70	rs7591064-?	rs7591064	0	7591064	Intergenic	1	0.11	5E-6	5.301029995663981		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	6q25.1	6	149977706	ULBP1	ULBP1 - BTF3P10	80329	345829		        4.00	         .12	rs1853665-?	rs1853665	0	1853665	Intergenic	1	0.34	7E-6	5.154901959985742		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	8q22.1	8	95107844	PLEKHF2	MIR3150A - PLEKHF2	100422964	79666		       34.85	       25.88	rs4392868-?	rs4392868	0	4392868	Intergenic	1	0.09	8E-6	5.096910013008055		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	7q21.3	7	96952499	DLX6AS	MARK2P10 - DLX6-AS1	402679	285987		       92.83	       16.02	rs17598306-?	rs17598306	0	17598306	Intergenic	1	0.08	9E-6	5.045757490560675		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	14q32.2	14	97836994	LOC100132612	LINC00618 - C14orf64	145249	388011		      891.60	       88.62	rs1471356-?	rs1471356	0	1471356	Intergenic	1	0.23	9E-6	5.045757490560675		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/23/2010	20923822	Niu N	10/05/2010	Genome Res	http://www.ncbi.nlm.nih.gov/pubmed/20923822	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	Human lymphoblastoid cell lines; 93 of African American, 89 of European ancestry, and 95 of Han Chinese American ancestry	NA	10p15.3	10	1364169	ADARB2	ADARB2			105			rs11250464-?	rs11250464	0	11250464	intron	0	0.18	6E-6	5.221848749616356		NR	NR	Affymetrix & Illumina [1,348,798]	N
11/03/2010	20920776	DeWan AT	10/01/2010	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/20920776	PDE11A associations with asthma: results of a genome-wide association scan.	Asthma	66 case children, 42 control children	38 case children, 461 control children	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [396,207]	N
01/14/2011	20801717	Shatunov A	10/01/2010	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20801717	Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study.	Amyotrophic lateral sclerosis	4,857 European ancestry cases, 8,987 European ancestry controls	NA	9p21.2[rs3849942]; 9p21.2[rs10122902]			Intergenic	 - 						2-SNP haplotype-1	rs3849942,rs10122902					0.23 (AG)	8E-10			NR	NR	Illumina [227,475]	N
01/14/2011	20801717	Shatunov A	10/01/2010	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20801717	Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study.	Amyotrophic lateral sclerosis	4,857 European ancestry cases, 8,987 European ancestry controls	NA	11q14.3	11	89611857	NR	NOX4 - FOLH1B	50507	219595		       22.25	       26.71	rs1488902-C	rs1488902	0	1488902	Intergenic	1	NR	3E-6	5.522878745280337		   1.15	[NR] 	Illumina [227,475]	N
01/14/2011	20801717	Shatunov A	10/01/2010	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20801717	Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study.	Amyotrophic lateral sclerosis	4,857 European ancestry cases, 8,987 European ancestry controls	NA	18q23	18	79813548	NR	CTDP1 - KCNG2	9150	26251		       59.04	       50.12	rs4799088-?	rs4799088	0	4799088	Intergenic	1	NR	9E-6	5.045757490560675		   1.15	[NR] 	Illumina [227,475]	N
01/14/2011	20801717	Shatunov A	10/01/2010	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20801717	Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study.	Amyotrophic lateral sclerosis	4,857 European ancestry cases, 8,987 European ancestry controls	NA	9p21.2[rs3849942]; 9p21.2[rs10122902]			Intergenic	 - 						2-SNP haplotype-2	rs3849942,rs10122902					0.57 (GG)	5E-11			NR	NR	Illumina [227,475]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q22.2	5	113244593	NR	MCC			4163			rs17323670-?	rs17323670	0	17323670	intron	0	NR	7E-6	5.154901959985742		   1.75	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11q25	11	131466180	NR	NTM			50863			rs992564-?	rs992564	0	992564	intron	0	NR	4E-6	5.397940008672037		   1.62	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q24.12	8	120623156	NR	SNTB1			6641			rs6986718-?	rs6986718	0	6986718	intron	0	NR	9E-6	5.045757490560675		   1.52	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p21.3	7	12897630	NR	ARL4A - RBMX2P4	10124	100862677		      206.70	       24.71	rs17166499-?	rs17166499	0	17166499	Intergenic	1	NR	5E-6	5.301029995663981		   1.51	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq27.3	23	145059799	CYCSP44	HNRNPCP10 - CYCSP44	100129229	349391		      218.14	      116.78	rs6627057-?	rs6627057	0	6627057	Intergenic	1	NR	1E-6	5.999999999999999		   1.46	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.3	19	6080471	NR	RFX2			5990			rs11880706-?	rs11880706	0	11880706	intron	0	NR	2E-6	5.698970004336018		   1.44	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q22.2	15	62020641	NR	VPS13C			54832			rs4143844-?	rs4143844	0	4143844	intron	0	NR	4E-6	5.397940008672037		   1.43	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	22q13.1	22	40600363	NR	MKL1			57591			rs17002034-?	rs17002034	0	17002034	intron	0	NR	4E-6	5.397940008672037		   1.40	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	2q21.2	2	133247997	NAP5	NCKAP5			344148			rs10496702-?	rs10496702	0	10496702	intron	0	NR	7E-7	6.154901959985743		   1.40	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3q26.2	3	170445686	TMEM212	MIR6828 - SLC7A14	102465497	57709		       22.52	       13.87	rs6444931-?	rs6444931	0	6444931	Intergenic	1	NR	6E-7	6.221848749616355		   1.34	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	21p11.1	21	10510446	NR	BAGE2 - TPTE	85319	7179		       18.83	       11.09	rs240444-?	rs240444	0	240444	Intergenic	1	NR	2E-6	5.698970004336018		   1.31	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p15.32	5	4720472	NR	IRX1 - LINC01020	79192	340094		     1119.07	      313.89	rs7727102-?	rs7727102	0	7727102	Intergenic	1	NR	1E-6	5.999999999999999		   1.31	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q33.1	13	101055958	NALCN	NALCN;NALCN-AS1			259232;100885778			rs2044117-?	rs2044117	0	2044117	intron;intron	0	NR	5E-7	6.30102999566398		   1.30	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p31.1	1	79668438	FAM69A	ADH5P2 - HMGB1P18	343296	646526		      145.97	      614.91	rs7533906-?	rs7533906	0	7533906	Intergenic	1	NR	4E-6	5.397940008672037		   1.30	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.11	19	18357076	NR	PGPEP1			54858			rs7248363-?	rs7248363	0	7248363	intron	0	NR	1E-6	5.999999999999999		   1.30	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q11.2	5	51922017	NR	HMGB1P47 - KATNBL1P4	100873897	100128982		      511.81	        8.79	rs10042348-?	rs10042348	0	10042348	Intergenic	1	NR	5E-6	5.301029995663981		   1.29	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1q31.3	1	196073532	NR	EEF1A1P14 - KCNT2	647167	343450		     1882.99	      152.25	rs7512769-?	rs7512769	0	7512769	Intergenic	1	NR	2E-6	5.698970004336018		   1.29	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p24.3	3	20067054	NR	KAT2B			8850			rs1124376-?	rs1124376	0	1124376	intron	0	NR	5E-6	5.301029995663981		   1.28	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p22.3	7	1846899	NR	MAD1L1;LOC100128374			8379;100128374			rs6952808-?	rs6952808	0	6952808	intron;intron	0	NR	2E-6	5.698970004336018		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p22.1	1	92936280	NR	FAM69A			388650			rs12745968-?	rs12745968	0	12745968	intron	0	NR	8E-7	6.096910013008056		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q22.1	8	93157121	NR	C8orf87			389676			rs278567-?	rs278567	0	278567	intron	0	NR	8E-6	5.096910013008055		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q34	13	110378231	NR	COL4A2			1284			rs7319311-?	rs7319311	0	7319311	intron	0	NR	4E-6	5.397940008672037		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20q11.23	20	38329435	NR	BPI			671			rs6024905-?	rs6024905	0	6024905	intron	0	NR	1E-6	5.999999999999999		   1.24	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p22.3	7	2001797	NR	MAD1L1			8379			rs1107592-?	rs1107592	0	1107592	intron	0	NR	2E-6	5.698970004336018		   1.24	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p24.3	3	20573781	NR	RNY4P22 - VENTXP7	100873800	391518		      380.91	      831.95	rs1395103-?	rs1395103	0	1395103	Intergenic	1	NR	9E-6	5.045757490560675		   1.24	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	10q11.21	10	44627931	NR	RPL9P21 - EIF2AP4	728374	100874401		      212.73	      178.51	rs11239177-?	rs11239177	0	11239177	Intergenic	1	NR	3E-6	5.522878745280337		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q14.1	5	79803641	NR	CMYA5 - MTX3	202333	345778		        3.42	      173.08	rs7735699-?	rs7735699	0	7735699	Intergenic	1	NR	6E-6	5.221848749616356		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	17q12	17	37666305	NR	MIR378J - HNF1B	102465136	6928		       51.27	       20.13	rs6607284-?	rs6607284	0	6607284	Intergenic	1	NR	7E-6	5.154901959985742		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p22.3	7	2258592	NR	SNX8;MIR6836			29886;102465503			rs2398668-?	rs2398668	0	2398668	intron;nearGene-5	0	NR	7E-6	5.154901959985742		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20p11.21	20	24736449	NR	SYNDIG1 - CST7	79953	8530		       69.83	      212.78	rs2424635-?	rs2424635	0	2424635	Intergenic	1	NR	7E-6	5.154901959985742		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8p23.3	8	2092276	NR	MYOM2			9172			rs2235121-?	rs2235121	0	2235121	intron	0	NR	8E-6	5.096910013008055		   1.22	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9p24.1	9	6784726	NR	KDM4C			23081			rs10815468-?	rs10815468	0	10815468	intron	0	NR	7E-6	5.154901959985742		   1.22	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p21.3	7	7359773	NR	COL28A1			340267			rs10486158-?	rs10486158	0	10486158	intron	0	NR	6E-6	5.221848749616356		   1.27	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	10p12.33	10	18099505	NR	SLC39A12 - CACNB2	221074	783		       56.21	       41.17	rs10508558-?	rs10508558	0	10508558	Intergenic	1	NR	9E-6	5.045757490560675		   1.54	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	14q23.1	14	57734007	NR	SLC35F4			341880			rs1092015-?	rs1092015	0	1092015	intron	0	NR	8E-6	5.096910013008055		   2.04	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	2p24.3	2	12428870	NR	LOC100506457			100506457			rs10929808-?	rs10929808	0	10929808	intron	0	NR	4E-6	5.397940008672037		   1.37	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7q36.3	7	156255955	LOC393076	SHH - LINC01006	6469	100506380		      443.68	      216.14	rs10949808-?	rs10949808	0	10949808	Intergenic	1	NR	1E-7	7		   1.27	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8p21.3	8	20208538	NR	ATP6V1B2			526			rs1106634-?	rs1106634	0	1106634	intron	0	NR	4E-6	5.397940008672037		   1.34	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q23	15	69357714	NR	PAQR5			54852			rs11072089-?	rs11072089	0	11072089	intron	0	NR	3E-6	5.522878745280337		   1.89	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	4q22.3	4	94224984	NR	SMARCAD1			56916			rs11097407-?	rs11097407	0	11097407	intron	0	NR	4E-6	5.397940008672037		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq28	23	153741041	NR	ABCD1			215			rs11156606-?	rs11156606	0	11156606	intron	0	NR	3E-6	5.522878745280337		   1.42	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	12q13.11	12	48009982	NR	COL2A1 - SENP1	1280	29843		        5.43	       32.92	rs11168351-?	rs11168351	0	11168351	Intergenic	1	NR	9E-6	5.045757490560675		   1.22	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	10p15.1	10	6365775	NR	DKFZp667F0711 - PRKCQ	399716	5588		       13.01	       27.82	rs11258317-?	rs11258317	0	11258317	Intergenic	1	NR	6E-6	5.221848749616356		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q33.3	5	157515277	NR	ADAM19			8728			rs11740562-?	rs11740562	0	11740562	intron	0	NR	1E-6	5.999999999999999		   1.56	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9q33.1	9	118597008	ASTN2	TPT1P9 - BRINP1	389787	1620		      513.53	      569.62	rs11789399-?	rs11789399	0	11789399	Intergenic	1	NR	6E-9	8.221848749616356		   1.29	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p13.1	5	40626651	NR	LINC00603 - PTGER4	102467077	5734		      573.33	       53.28	rs11955175-?	rs11955175	0	11955175	Intergenic	1	NR	6E-6	5.221848749616356		   1.47	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9p22.3	9	15283099	NR	TTC39B			158219			rs12003180-?	rs12003180	0	12003180	intron	0	NR	5E-6	5.301029995663981		   1.60	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q15	6	89022382	GABRR1	CYCSP16 - PNRC1	360171	10957		       19.48	       58.33	rs12201676-?	rs12201676	0	12201676	Intergenic	1	NR	4E-8	7.397940008672037		   1.31	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11p15.1	11	18244252	NR	SAA2;SAA2-SAA4			6289;100528017			rs12282742-?	rs12282742	0	12282742	intron;intron	0	NR	1E-6	5.999999999999999		   1.67	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	12q15	12	68138297	NR	HNRNPA1P70 - IFNG	341333	3458		      101.52	       16.47	rs12321565-?	rs12321565	0	12321565	Intergenic	1	NR	5E-6	5.301029995663981		   1.35	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	16p13.3	16	7703702	NR	RBFOX1			54715			rs12444931-?	rs12444931	0	12444931	intron	0	NR	5E-6	5.301029995663981		   1.22	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p14.3	3	54598520	NR	CACNA2D3			55799			rs13064588-?	rs13064588	0	13064588	intron	0	NR	4E-6	5.397940008672037		   1.24	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q12.3	5	65238814	NR	ADAMTS6			11174			rs13183791-?	rs13183791	0	13183791	intron	0	NR	6E-6	5.221848749616356		   1.57	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	22q13.2	22	42274959	NR	LOC388906			388906			rs134882-?	rs134882	0	134882	intron	0	NR	7E-6	5.154901959985742		   1.22	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq21.1	23	83280161	NR	RPL22P22 - POU3F4	100130922	5456		      773.35	      228.10	rs1410530-?	rs1410530	0	1410530	Intergenic	1	NR	4E-6	5.397940008672037		   1.37	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8p21.2	8	27219081	NR	MIR548H4 - STMN4	100313884	81551		      170.12	       16.24	rs1446682-?	rs1446682	0	1446682	Intergenic	1	NR	6E-6	5.221848749616356		   1.26	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xp21.1	23	32207138	NR	DMD			1756			rs1456737-?	rs1456737	0	1456737	intron	0	NR	5E-6	5.301029995663981		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	2p24.1	2	22353228	NR	RNA5SP87 - KLHL29	100873320	114818		       14.23	     1032.20	rs1605834-?	rs1605834	0	1605834	Intergenic	1	NR	8E-6	5.096910013008055		   1.32	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3q28	3	191478803	NR	PYDC2 - FGF12	152138	2257		       17.35	      660.44	rs16822582-?	rs16822582	0	16822582	Intergenic	1	NR	8E-6	5.096910013008055		   1.50	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	18q22.1	18	68646835	NR	MTL3P - TMX3	4531	54495		      118.72	       26.85	rs1704734-?	rs1704734	0	1704734	Intergenic	1	NR	6E-6	5.221848749616356		   1.32	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q21	6	108002555	NR	RPL23AP50 - RPL3P7	728106	642741		       70.30	        1.75	rs17069122-?	rs17069122	0	17069122	Intergenic	1	NR	1E-6	5.999999999999999		   2.33	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	14q12	14	26937686	NR	UNGP2 - RPS27AP4	57005	326323		       11.63	      321.00	rs17111920-?	rs17111920	0	17111920	Intergenic	1	NR	3E-6	5.522878745280337		   2.41	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p15.2	5	10811362	NR	CTD-2154B17.1 - CTNND2	102723441	1501		       25.84	      160.48	rs17176973-?	rs17176973	0	17176973	Intergenic	1	NR	5E-6	5.301029995663981		   1.78	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q22.1	5	111771418	NR	NREP			9315			rs173896-?	rs173896	0	173896	intron	0	NR	7E-6	5.154901959985742		   1.43	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.3	19	3251221	NR	CELF5			60680			rs17764205-?	rs17764205	0	17764205	intron	0	NR	5E-6	5.301029995663981		   1.36	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9q21.33	9	87416754	NR	C9orf170 - DAPK1	401535	1612		      257.03	       80.47	rs1806864-?	rs1806864	0	1806864	Intergenic	1	NR	1E-6	5.999999999999999		   1.44	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q12.1	8	57928365	FAM110B	RPL30P10 - FAM110B	100270982	90362		      535.48	       66.14	rs1992045-?	rs1992045	0	1992045	Intergenic	1	NR	2E-7	6.698970004336019		   1.56	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11p15.3	11	10718819	NR	MRVI1 - CTR9	10335	9646		       24.83	       32.45	rs2018368-?	rs2018368	0	2018368	Intergenic	1	NR	1E-6	5.999999999999999		   1.24	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq21.1	23	83456934	NR	RPL22P22 - POU3F4	100130922	5456		      950.12	       51.33	rs213443-?	rs213443	0	213443	Intergenic	1	NR	6E-6	5.221848749616356		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20q13.2	20	53993957	NR	BCAS1			8537			rs2276498-?	rs2276498	0	2276498	intron	0	NR	7E-6	5.154901959985742		   1.31	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7q21.11	7	82156904	NR	CACNA2D1			781			rs2367911-?	rs2367911	0	2367911	intron	0	NR	5E-6	5.301029995663981		   1.77	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11q22.1	11	98254676	CNTN5	RNA5SP347 - CNTN5	100873609	53942		      597.09	      766.30	rs2509843-?	rs2509843	0	2509843	Intergenic	1	NR	2E-7	6.698970004336019		   1.27	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5q21.3	5	107388887	NR	EFNA5			1946			rs252817-?	rs252817	0	252817	intron	0	NR	2E-6	5.698970004336018		   1.24	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	5p15.2	5	11298111	NR	CTNND2;LOC102723459			1501;102723459			rs2530215-?	rs2530215	0	2530215	intron;intron	0	NR	7E-6	5.154901959985742		   1.22	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q14	15	38711562	NR	C15orf53 - C15orf54	400359	400360		       11.52	      539.12	rs2643217-?	rs2643217	0	2643217	Intergenic	1	NR	6E-6	5.221848749616356		   1.27	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p13.2	1	114172962	NR	SYT6 - MRPL57P1	148281	126581		       19.11	      106.04	rs2774292-?	rs2774292	0	2774292	Intergenic	1	NR	3E-6	5.522878745280337		   2.09	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q16.3	6	100308811	NR	PRDX2P4 - SIM1	442239	6492		      171.94	       76.20	rs2841307-?	rs2841307	0	2841307	Intergenic	1	NR	1E-6	5.999999999999999		   1.36	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q22.2	15	59426970	NR	FAM81A			145773			rs28890483-?	rs28890483	0	28890483	intron	0	NR	9E-6	5.045757490560675		   1.39	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	17q21.2	17	41094387	NR	KRTAP4-7 - KRTAP4-8	100132476	728224		        9.24	        2.59	rs4006360-?	rs4006360	0	4006360	Intergenic	1	NR	4E-6	5.397940008672037		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p13.2	1	115333024	NR	NGF			4803			rs4332358-?	rs4332358	0	4332358	intron	0	NR	5E-6	5.301029995663981		   1.26	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	16q23.1	16	77882294	NR	VAT1L			57687			rs435746-?	rs435746	0	435746	intron	0	NR	3E-6	5.522878745280337		   1.28	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q12.13	13	25463822	NR	ATP8A2			51761			rs4770837-?	rs4770837	0	4770837	intron	0	NR	5E-6	5.301029995663981		   1.25	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	22q12.1	22	26615456	NR	CRYBA4;CRYBB1			1413;1414			rs4822752-?	rs4822752	0	4822752	intron;intron	0	NR	9E-6	5.045757490560675		   1.22	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7p11.2	7	57639445	NR	LOC100128575			100128575			rs4870684-?	rs4870684	0	4870684	intron	0	NR	5E-6	5.301029995663981		   1.27	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q14.3	6	86756774	NR	NDUFA5P9 - HTR1E	100289579	3354		      542.20	      180.53	rs493187-?	rs493187	0	493187	Intergenic	1	NR	3E-6	5.522878745280337		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p35.2	1	29959372	PTPRU	PTPRU - MATN1	10076	4146		      632.56	      751.91	rs4949526-?	rs4949526	0	4949526	Intergenic	1	NR	4E-7	6.397940008672037		   1.28	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q33.2	13	105999312	DAOA	LINC00344 - RNA5SP38	100874133	100873370		      267.60	      156.06	rs4996815-?	rs4996815	0	4996815	Intergenic	1	NR	1E-7	7		   1.28	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq27.1	23	140084524	NR	HNRNPA3P3 - RPS17P17	643689	100271230		       50.65	      386.34	rs5907577-?	rs5907577	0	5907577	Intergenic	1	NR	5E-6	5.301029995663981		   1.27	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	Xq27.1	23	140231900	NR	HNRNPA3P3 - RPS17P17	643689	100271230		      198.03	      238.97	rs5955415-?	rs5955415	0	5955415	Intergenic	1	NR	2E-6	5.698970004336018		   1.46	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20p11.23	20	19871859	RIN2	RIN2			54453			rs6046396-?	rs6046396	0	6046396	intron	0	NR	4E-7	6.397940008672037		   1.28	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q14.3	13	53861102	NR	LINC00558			100861552			rs6561750-?	rs6561750	0	6561750	intron	0	NR	9E-6	5.045757490560675		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q24.3	8	141349451	NR	SLC45A4 - GPR20	57210	2843		       49.31	        7.03	rs7386474-?	rs7386474	0	7386474	Intergenic	1	NR	3E-6	5.522878745280337		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	8q24.3	8	142610477	NR	MROH4P - ARC	101154686	23237		       35.02	         .57	rs7465272-?	rs7465272	0	7465272	Intergenic	1	NR	9E-6	5.045757490560675		   1.26	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9q33.2	9	121336257	NR	GSN-AS1 - STOM	57000	2040		       50.73	        2.73	rs767770-?	rs767770	0	767770	Intergenic	1	NR	6E-6	5.221848749616356		   1.72	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11q23.3	11	116529665	NR	RPL15P15 - BUD13	100128347	84811		      578.86	      218.51	rs7941534-?	rs7941534	0	7941534	Intergenic	1	NR	8E-6	5.096910013008055		   1.27	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	7q35	7	146262151	CNTNAP2	CNTNAP2			26047			rs802568-?	rs802568	0	802568	intron	0	NR	2E-7	6.698970004336019		   2.03	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	9p13.3	9	33217268	NR	B4GALT1-AS1 - SPINK4	101929639	27290		       37.29	       22.93	rs830407-?	rs830407	0	830407	Intergenic	1	NR	8E-6	5.096910013008055		   1.36	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q14.11	13	40374014	NR	LINC00598			646982			rs913246-?	rs913246	0	913246	intron	0	NR	7E-6	5.154901959985742		   1.94	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	14q12	14	31964652	NR	NUBPL - ARHGAP5-AS1	80224	84837		      103.43	      110.77	rs915071-?	rs915071	0	915071	Intergenic	1	NR	2E-6	5.698970004336018		   1.23	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	6q16.3	6	104145992	NR	NPM1P10 - HACE1	10837	57531		      119.13	      582.10	rs9377619-?	rs9377619	0	9377619	Intergenic	1	NR	2E-6	5.698970004336018		   1.34	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q31.3	13	93688843	NR	GPC6			10082			rs9561428-?	rs9561428	0	9561428	intron	0	NR	9E-6	5.045757490560675		   1.83	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p24.2	3	25070680	NR	LOC101927874			101927874			rs993804-?	rs993804	0	993804	intron	0	NR	1E-6	5.999999999999999		   1.28	[NR] 	Affymetrix [722,112]	N
11/02/2012	20889312	Wang KS	10/01/2010	Schizophr Res	http://www.ncbi.nlm.nih.gov/pubmed/20889312	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.2	19	11220266	NR	DOCK6			57572			rs17699030-?	rs17699030	0	17699030	intron	0	NR	8E-6	5.096910013008055		   1.71	[NR] 	Affymetrix [722,112]	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	4p16.1	4	9925343	SLC2A9	SLC2A9			56606			rs13129697-G	rs13129697	0	13129697	intron	0	0.27	2E-242	241.698970004336	(Urate)	  22.21	[20.90-23.52] umol/l decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	1q23.3			ABCG2	 - 						rs2199936-A	rs2199936					0.11	1E-75		(Urate)	  18.08	[16.16-20.00] umol/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	11q13.1	11	64566642	SLC22A11	SLC22A11			55867			rs2078267-C	rs2078267	0	2078267	intron	0	0.46	2E-26	25.69897000433602	(Urate)	   6.80	[5.55-8.05] umol/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	6p22.2	6	25812922	SLC17A1	SLC17A1			6568			rs1165196-G	rs1165196	0	1165196	missense	0	0.46	5E-25	24.30102999566398	(Urate)	   6.21	[5.03-7.39] umol/l decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	2p23.3	2	27519736	GCKR	GCKR			2646			rs780093-T	rs780093	0	780093	intron	0	0.40	4E-17	16.39794000867203	(Urate)	   5.15	[3.95-6.35] umol/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	12q13.3	12	57415673	R3HDM2,INHBC	R3HDM2			22864			rs1106766-T	rs1106766	0	1106766	intron	0	0.23	2E-11	10.69897000433602	(Urate)	   5.16	[3.65-6.67] umol/l decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	6p24.3	6	7101851	RREB1	BTF3P7 - RREB1	652960	6239		      306.35	        5.75	rs675209-T	rs675209	0	675209	Intergenic	1	0.26	1E-9	8.999999999999998	(Urate)	   4.39	[2.98-5.80] umol/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	1q21.1	1	145711421	PDZK1	TRNAN5			100189005			rs1967017-T	rs1967017	0	1967017		0	0.47	4E-8	7.397940008672037	(Urate)	   3.33	[2.15-4.51] umol/l increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	4p16.1	4	9925343	SLC2A9	SLC2A9			56606			rs13129697-T	rs13129697	0	13129697	intron	0	0.73	4E-13	12.39794000867204	(Gout)	   1.52	[1.35-1.69] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	1q23.3			ABCG2	 - 						rs2199936-A	rs2199936					0.11	3E-23		(Gout)	   1.86	[1.64-2.10] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/15/2010	20884846	Yang Q	09/30/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20884846	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	11q13.1	11	64566642	SLC22A11	SLC22A11			55867			rs2078267-C	rs2078267	0	2078267	intron	0	0.46	1E-6	5.999999999999999	(Gout)	   1.26	[1.14-1.38] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.1	15	88845674	ACAN	ACAN			176			rs16942341-T	rs16942341	0	16942341	cds-synon	0	0.03	4E-27	26.39794000867203		    .13	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	6	35435028	PPARD/FANCE	TRNAI25			100189401			rs6457821-A	rs6457821	0	6457821		0	0.02	2E-12	11.69897000433602		    .10	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	6	34231315	HMGA1	TRNAI25			100189401			rs2780226-T	rs2780226	0	2780226		0	0.92	8E-28	27.09691001300805		    .08	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q31.21	4	144647200	HHIP	HHIP;HHIP-AS1			64399;646576			rs7689420-T	rs7689420	0	7689420	intron;nearGene-5	0	0.16	6E-51	50.22184874961635		    .07	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q23	3	141386728	ZBTB38	ZBTB38			253461			rs724016-A	rs724016	0	724016	intron	0	0.56	3E-86	85.52287874528034		    .07	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20q11.22	20	35437976	GDF5	GDF5			8200			rs143384-A	rs143384	0	143384		0	0.58	1E-58	57.99999999999999		    .06	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q23	15	71869062	MYO9A	MYO9A			4649			rs12902421-T	rs12902421	0	12902421	intron	0	0.97	3E-8	7.522878745280337		    .06	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p22.2	2	37733470	CDC42EP3	CDC42EP3 - LINC00211	10602	101929559		       60.94	       92.78	rs17511102-A	rs17511102	0	17511102	Intergenic	1	0.91	2E-18	17.69897000433602		    .06	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q13.1	11	65569348	SSSCA1	SSSCA1;SSSCA1-AS1			10534;254100			rs3782089-T	rs3782089	0	3782089	nearGene-5;ncRNA	0	0.06	4E-13	12.39794000867204		    .06	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	13q14.3	13	50531198	DLEU7	RPL34P26 - DLEU7	100130718	220107		      169.44	      181.43	rs3118905-A	rs3118905	0	3118905	Intergenic	1	0.29	1E-45	44.99999999999999		    .06	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q13.3	12	56346898	STAT2	STAT2			6773			rs2066807-C	rs2066807	0	2066807	missense	0	0.93	1E-13	13		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p16.1	2	55884174	EFEMP1	EFEMP1			2202			rs3791675-T	rs3791675	0	3791675	intron	0	0.23	3E-35	34.52287874528033		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p21.2	3	51034282	DOCK3	DOCK3			1795			rs13088462-T	rs13088462	0	13088462	intron	0	0.94	4E-10	9.397940008672037		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q24.21	8	129713419	GSDMC	MIR3686 - GSDMC	100500839	56169		      229.28	       34.78	rs6470764-T	rs6470764	0	6470764	Intergenic	1	0.2	2E-28	27.69897000433602		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q21.2	15	51238298	CYP19A1	CYP19A1			1588			rs16964211-A	rs16964211	0	16964211	intron	0	0.05	2E-9	8.698970004336019		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q21.13	9	75927370	PCSK5	PCSK5			5125			rs11144688-A	rs11144688	0	11144688	intron	0	0.11	1E-11	11		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q24.1	6	142476152	GPR126	GPR126 - HIVEP2	57211	3097		       29.89	      275.32	rs7763064-A	rs7763064	0	7763064	Intergenic	1	0.29	1E-33	32.99999999999999		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q25.3	6	158508410	TULP4	TULP4			56995			rs9456307-A	rs9456307	0	9456307	UTR-3	0	0.06	2E-9	8.698970004336019		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p22.2	7	2762169	GNA12	GNA12			2768			rs798489-T	rs798489	0	798489	intron	0	0.3	2E-33	32.69897000433601		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q21.2	1	149920979	SF3B4	SV2A - SF3B4	9900	10262		        3.10	        2.34	rs11205277-A	rs11205277	0	11205277	Intergenic	1	0.58	5E-32	31.30102999566398		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q37.1	2	231933256	NPPC	NPPC - DIS3L2	4880	129563		        6.93	       28.33	rs2580816-T	rs2580816	0	2580816	Intergenic	1	0.19	6E-22	21.22184874961636		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q16.3	6	104931079	LIN28B	HACE1 - LINC00577	57531	100113403		       71.16	        5.22	rs7759938-T	rs7759938	0	7759938	Intergenic	1	0.68	8E-31	30.09691001300805		    .05	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q25.3	1	184054395	TSEN15	TSEN15			116461			rs1046934-A	rs1046934	0	1046934	missense	0	0.64	2E-31	30.69897000433602		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q25.2	15	83911830	ADAMTSL3	ADAMTSL3			57188			rs11259936-A	rs11259936	0	11259936	intron	0	0.48	2E-35	34.69897000433602		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q21.21	4	81228852	PRKG2/BMP3	PRKG2 - RASGEF1B	5593	153020		       13.74	      197.54	rs788867-T	rs788867	0	788867	Intergenic	1	0.68	9E-28	27.04575749056067		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q14.1	6	75555926	SENP6	RPL26P20 - SENP6	100271191	26054		       55.78	       45.95	rs9360921-T	rs9360921	0	9360921	Intergenic	1	0.89	3E-13	12.52287874528034		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q23.3	17	63889105	CSH1/GH1	GH2 - CSH1	2689	1442		        7.16	        5.80	rs2665838-C	rs2665838	0	2665838	Intergenic	1	0.73	5E-25	24.30102999566398		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p12	1	118312964	SPAG17	RNA5SP56 - PSMC1P12	100873294	644094		       48.48	      301.15	rs9428104-A	rs9428104	0	9428104	Intergenic	1	0.24	6E-23	22.22184874961636		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20q11.22	20	33745375	ZNF341	ZNF341			84905			rs7274811-T	rs7274811	0	7274811	intron	0	0.23	6E-22	21.22184874961636		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.13	1	16980180	MFAP2	MFAP2			4237			rs2284746-C	rs2284746	0	2284746	intron	0	0.48	4E-29	28.39794000867204		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q24.3	1	172084147	DNM3	DNM3			26052			rs17346452-T	rs17346452	0	17346452	intron	0	0.73	1E-23	23		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q21.3	5	108777643	FER	FER			2241			rs13177718-T	rs13177718	0	13177718	intron	0	0.07	3E-8	7.522878745280337		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q23.1	6	130027974	L3MBTL3	L3MBTL3			84456			rs6569648-T	rs6569648	0	6569648	intron	0	0.76	1E-21	21		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20p12.3	20	6645571	BMP2	CASC20 - BMP2	101929244	650		      117.11	      122.53	rs2145272-A	rs2145272	0	2145272	Intergenic	1	0.65	2E-24	23.69897000433602		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	18q21.1	18	49433130	DYM	DYM			54808			rs9967417-C	rs9967417	0	9967417	intron	0	0.58	9E-25	24.04575749056067		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p25.1	3	13514336	HDAC11	HDAC11 - FBLN2	79885	2199		        7.91	       34.79	rs2597513-T	rs2597513	0	2597513	Intergenic	1	0.9	7E-10	9.154901959985741		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q34	5	168829235	SLIT3	SLIT3			6586			rs4282339-A	rs4282339	0	4282339	intron	0	0.2	7E-16	15.15490195998574		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p24.3	6	7725527	BMP6	BMP6			654			rs3812163-A	rs3812163	0	3812163	nearGene-5	0	0.54	1E-23	23		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q24.31	12	123338999	SBNO1	SBNO1			55206			rs11830103-A	rs11830103	0	11830103	intron	0	0.78	4E-15	14.39794000867204		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q11.2	17	30837005	ATAD5/RNF135	ATAD5			79915			rs3764419-A	rs3764419	0	3764419	intron	0	0.39	2E-21	20.69897000433602		    .04	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q21.3	3	129331913	C3orf47	NUP210P3 - MARK2P3	100419070	100421507		        7.94	        2.62	rs6439167-T	rs6439167	0	6439167	Intergenic	1	0.21	9E-15	14.04575749056067		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q25.1	6	151789808	ESR1	ESR1			2099			rs543650-T	rs543650	0	543650	intron	0	0.4	1E-17	17		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p15.3	7	23463355	IGF2BP3	IGF2BP3			10643			rs12534093-A	rs12534093	0	12534093	intron	0	0.22	2E-14	13.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16p13.3	16	742190	NARFL	NARFL			64428			rs11648796-A	rs11648796	0	11648796	nearGene-5	0	0.74	1E-13	13		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q21.2	2	133677253	NCKAP5	NCKAP5 - MGAT5	344148	4249		       35.71	      442.68	rs7567288-T	rs7567288	0	7567288	Intergenic	1	0.8	2E-12	11.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.3	6	19841262	ID4	ID4			3400			rs1047014-T	rs1047014	0	1047014	UTR-3	0	0.75	2E-13	12.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.1	6	29116455	OR2J3	TRNAI25			100189401			rs3129109-T	rs3129109	0	3129109		0	0.39	2E-17	16.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q23.1	14	60490561	SIX6	C14orf39 - SALL4P7	317761	390483		        4.52	        3.30	rs2093210-T	rs2093210	0	2093210	Intergenic	1	0.58	6E-17	16.22184874961636		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q21.31	17	45138914	ACBD4	ACBD4			79777			rs4986172-T	rs4986172	0	4986172	intron	0	0.35	2E-16	15.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p13	3	72388262	RYBP	RYBP			23429			rs9863706-T	rs9863706	0	9863706	intron	0	0.22	4E-13	12.39794000867204		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.2	5	177090325	FGFR4/NSD1	FGFR4			2264			rs422421-T	rs422421	0	422421	intron	0	0.22	1E-12	12		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7q36.1	7	150819934	TMEM176A	TMEM176A - AOC1	55365	26		       14.81	        4.69	rs2110001-C	rs2110001	0	2110001	Intergenic	1	0.69	3E-13	12.52287874528034		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q24.1	15	74044292	PML	PML			5371			rs5742915-T	rs5742915	0	5742915	missense	0	0.54	1E-15	15		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.2	19	8579147	ADAMTS10	MYO1F			4542			rs4072910-C	rs4072910	0	4072910	nearGene-5	0	0.46	4E-13	12.39794000867204		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p34.2	1	41280098	SCMH1	RPL36AP9 - FOXO6	100271139	100132074		       15.22	       81.56	rs2154319-T	rs2154319	0	2154319	Intergenic	1	0.75	2E-12	11.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.1	5	171776434	FBXW11	FGF18 - SMIM23	8817	644994		      318.81	        9.38	rs12153391-A	rs12153391	0	12153391	Intergenic	1	0.25	4E-12	11.39794000867204		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.2	5	173557111	BOD1	MIR8056 - BOD1	102465862	91272		      209.58	       50.03	rs889014-T	rs889014	0	889014	Intergenic	1	0.36	9E-16	15.04575749056067		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q22	17	56701456	NOG	NOG - C17orf67	9241	339210		      105.87	       90.46	rs227724-A	rs227724	0	227724	Intergenic	1	0.65	7E-15	14.15490195998574		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.3	19	2177194	DOT1L	DOT1L			84444			rs12982744-C	rs12982744	0	12982744	intron	0	0.6	3E-16	15.52287874528034		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q31.1	5	132364175	SLC22A5	LOC553103			553103			rs274546-A	rs274546	0	274546	intron	0	0.4	7E-16	15.15490195998574		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.32	6	32696222	HLA locus	TRNAI25			100189401			rs6457620-C	rs6457620	0	6457620		0	0.51	2E-16	15.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q21.11	8	77266249	PEX2	HIGD1AP18 - PKIA	100874456	5569		      252.20	     1249.85	rs6473015-A	rs6473015	0	6473015	Intergenic	1	0.72	7E-13	12.15490195998574		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12p13.2	12	11702839	ETV6	ETV6			2120			rs2856321-A	rs2856321	0	2856321	intron	0	0.64	5E-15	14.30102999566398		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.2	19	7184751	INSR	INSR			3643			rs891088-A	rs891088	0	891088	intron	0	0.74	2E-12	11.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.11	1	24717620	CLIC4	SRRM1 - CLIC4	10250	25932		       44.34	       27.65	rs4601530-T	rs4601530	0	4601530	Intergenic	1	0.26	2E-12	11.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q41	1	218436360	TGFB2	TGFB2			7042			rs6684205-A	rs6684205	0	6684205	intron	0	0.71	2E-12	11.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p11.2	2	88625104	EIF2AK3	EIF2AK3			9451			rs11684404-T	rs11684404	0	11684404	intron	0	0.67	1E-13	13		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10q24.2	10	100045685	CPN1	CPN1			1369			rs11599750-T	rs11599750	0	11599750	intron	0	0.38	2E-13	12.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q23.2	12	101980010	CCDC53/GNPTAB	NENFP2 - CCDC53	100129880	51019		       15.54	       32.93	rs7971536-A	rs7971536	0	7971536	Intergenic	1	0.46	8E-14	13.09691001300805		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q24.3	14	74524043	LTBP2	LTBP2			4053			rs862034-A	rs862034	0	862034	intron	0	0.36	7E-14	13.15490195998574		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.3	15	100219409	ADAMTS17	ADAMTS17			170691			rs4965598-T	rs4965598	0	4965598	intron	0	0.68	4E-13	12.39794000867204		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	18q21.32	18	60183864	MC4R	RPS3AP49 - MC4R	400652	4160		       33.46	      187.47	rs17782313-T	rs17782313	0	17782313	Intergenic	1	0.76	4E-11	10.39794000867204		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p21.1	3	53084723	RTF1	SERBP1P3 - RFT1	553148	91869		       19.63	         .91	rs2336725-T	rs2336725	0	2336725	Intergenic	1	0.55	1E-12	12		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q11.2	5	55706071	SLC38A9	SLC38A9			153129			rs11958779-A	rs11958779	0	11958779	intron	0	0.7	2E-12	11.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p11.2	11	48076728	PTPRJ/SLC39A13	PTPRJ			5795			rs10838801-A	rs10838801	0	10838801	intron	0	0.69	4E-12	11.39794000867204		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p22.3	2	33136358	LTBP1	LTBP1			4052			rs6714546-A	rs6714546	0	6714546	intron	0	0.28	2E-9	8.698970004336019		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p14.3	3	56633654	C3orf63	FAM208A			23272			rs9835332-C	rs9835332	0	9835332	missense	0	0.46	5E-13	12.30102999566398		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.1	6	44978769	SUPT3H/RUNX2	SUPT3H			8464			rs9472414-A	rs9472414	0	9472414	intron	0	0.22	2E-9	8.698970004336019		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q31.3	9	111044802	LPAR1	LPAR1 - RNY4P18	1902	100379298		        5.56	       52.53	rs1468758-T	rs1468758	0	1468758	Intergenic	1	0.25	1E-9	8.999999999999998		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10q22.3	10	79361940	PPIF	PPIF - ZCCHC24	10105	219654		        6.61	       20.39	rs2145998-A	rs2145998	0	2145998	Intergenic	1	0.49	4E-13	12.39794000867204		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q24.1	14	68346398	RAD51L1	RAD51B			5890			rs1570106-T	rs1570106	0	1570106	intron	0	0.2	8E-9	8.096910013008056		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q41	1	219570377	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      369.68	       37.55	rs11118346-T	rs11118346	0	11118346	Intergenic	1	0.47	2E-12	11.69897000433602		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7q36.1	7	148953542	PDIA4	RNY5 - RNY4	6090	6086		       11.97	        9.77	rs822552-C	rs822552	0	822552	Intergenic	1	0.74	3E-8	7.522878745280337		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8p21.2	8	24258791	ADAM28	STC1 - ADAM28	6781	10863		      403.98	       35.25	rs1013209-T	rs1013209	0	1013209	Intergenic	1	0.25	2E-9	8.698970004336019		    .03	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p22.1	1	92858414	RPL5	FAM69A			388650			rs10874746-T	rs10874746	0	10874746	intron	0	0.37	7E-11	10.15490195998574		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q37.3	2	241323571	SEPT2	SEPT2			4735			rs12694997-A	rs12694997	0	12694997	intron	0	0.24	1E-8	8		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q22.3	3	136255374	PCCB	PCCB			5096			rs9844666-A	rs9844666	0	9844666	intron	0	0.25	4E-9	8.397940008672036		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q22.1	6	117200993	VGLL2	RPS29P13 - VGLL2	100271122	245806		      152.15	       64.57	rs961764-C	rs961764	0	961764	Intergenic	1	0.42	1E-11	11		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p14.1	7	38088724	STARD3NL	EPDR1 - STARD3NL	54749	83930		      136.78	       89.48	rs6959212-T	rs6959212	0	6959212	Intergenic	1	0.32	2E-9	8.698970004336019		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q21.32	9	83937290	C9orf64	KIF27 - C9orf64	55582	84267		       15.78	        1.02	rs7853377-A	rs7853377	0	7853377	Intergenic	1	0.77	5E-8	7.30102999566398		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q32.12	14	92019537	TRIP11	TRIP11			9321			rs7155279-T	rs7155279	0	7155279	intron	0	0.36	1E-10	10		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q35.1	4	183294522	WWC2	WWC2			80014			rs955748-A	rs955748	0	955748	intron	0	0.24	4E-8	7.397940008672037		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q23.2	5	123321505	CEP120	SUMO1P5 - CEP120	474341	153241		       77.92	       23.38	rs1582931-A	rs1582931	0	1582931	Intergenic	1	0.47	2E-10	9.698970004336017		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q13.2	11	67058689	RHOD	RHOD			29984			rs7112925-T	rs7112925	0	7112925	intron	0	0.35	9E-10	9.045757490560675		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p15.3	11	12676493	TEAD1	TEAD1;LOC102723893			7003;102723893			rs7926971-A	rs7926971	0	7926971	intron;intron	0	0.55	4E-10	9.397940008672037		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	13q13.1	13	32573411	PDS5B/BRCA2	N4BP2L2-IT2 - PDS5B	116828	23047		       64.02	       13.02	rs7332115-T	rs7332115	0	7332115	Intergenic	1	0.62	6E-10	9.221848749616356		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q12	17	38765943	PIP4K2B	PIP4K2B			8396			rs1043515-A	rs1043515	0	1043515	UTR-3	0	0.45	3E-10	9.522878745280336		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20p13	20	4121153	SMOX	LOC101929155			101929155			rs1741344-T	rs1741344	0	1741344	ncRNA	0	0.63	3E-9	8.522878745280337		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q25.2	1	176823113	PAPPA2	PAPPA2			60676			rs1325598-A	rs1325598	0	1325598	intron	0	0.43	1E-9	8.999999999999998		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.3	5	180304014	GFPT2	GFPT2			9945			rs6879260-T	rs6879260	0	6879260	intron	0	0.39	2E-9	8.698970004336019		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q11.2	17	29590753	ANKRD13B	GIT1;ANKRD13B			28964;124930			rs3110496-A	rs3110496	0	3110496	nearGene-5;intron	0	0.33	7E-9	8.154901959985743		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q32.3	1	212064456	DTL	DTL			51514			rs10863936-A	rs10863936	0	10863936	intron	0	0.53	2E-9	8.698970004336019		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10p13	10	12876764	CCDC3	MIR548Q - CCDC3	100313841	83643		      151.41	       19.86	rs7909670-T	rs7909670	0	7909670	Intergenic	1	0.44	3E-9	8.522878745280337		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q22.2	15	62088060	C2CD4A	NPM1P47 - C2CD4B	100129972	388125		        4.75	       75.48	rs7178424-T	rs7178424	0	7178424	Intergenic	1	0.47	6E-9	8.221848749616356		    .02	[NR] unit decrease	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q21	6	109462738	ZBTB24	ZBTB24;MICAL1			9841;64780			rs1046943-A	rs1046943	0	1046943	UTR-3;intron	0	0.58	3E-8	7.522878745280337		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q23.3	11	118703966	TREH	TREH - DDX6	11181	1656		       24.29	       43.80	rs494459-T	rs494459	0	494459	Intergenic	1	0.41	2E-8	7.698970004336018		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.11	1	26415053	LIN28	LIN28A			79727			rs7532866-A	rs7532866	0	7532866	intron	0	0.67	3E-8	7.522878745280337		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p22.2	1	88657760	PKN2	LOC101927891			101927891			rs6699417-T	rs6699417	0	6699417	intron	0	0.61	5E-9	8.301029995663981		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q21.32	17	49312652	ZNF652	ZNF652			22834			rs2072153-C	rs2072153	0	2072153	intron	0	0.3	4E-8	7.397940008672037		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q21.33	17	51167386	NME2	NME2;NME1-NME2			4831;654364			rs4605213-C	rs4605213	0	4605213	intron;intron	0	0.34	3E-8	7.522878745280337		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.33	1	2137733	PRKCZ	PRKCZ			5590			rs425277-T	rs425277	0	425277	intron	0	0.28	2E-8	7.698970004336018		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9p22.3	9	16368734	BNC2	C9orf92 - BNC2	100129385	54796		       92.42	       40.77	rs7864648-T	rs7864648	0	7864648	Intergenic	1	0.32	2E-8	7.698970004336018		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p15.1	11	17294482	NUCB2	NUCB2			4925			rs1330-T	rs1330	0	1330	intron	0	0.35	5E-9	8.301029995663981		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p11.12	11	49537620	FOLH1	CBX3P8 - TRIM51FP	100286965	283257		      130.91	      295.35	rs1814175-T	rs1814175	0	1814175	Intergenic	1	0.34	2E-8	7.698970004336018		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q36.1	2	224183027	SERPINE2	SERPINE2 - FAM124B	5270	79843		      143.71	      195.67	rs2629046-T	rs2629046	0	2629046	Intergenic	1	0.55	8E-12	11.09691001300806		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q24	4	105185196	TET2	TET2			54790			rs10010325-A	rs10010325	0	10010325	intron	0	0.49	4E-11	10.39794000867204		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17p11.2	17	21380911	KCNJ12	KCNJ12			3768			rs4640244-A	rs4640244	0	4640244	intron	0	0.61	2E-8	7.698970004336018		    .02	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.12	1	23210398	HTR1D	HTR1D - RPL29P6	3352	391019		       15.67	       34.33	rs1738475-C	rs1738475	0	1738475	Intergenic	1	0.59	3E-12	11.52287874528034		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p21	2	44541063	C2orf34	CAMKMT			79823			rs2341459-T	rs2341459	0	2341459	intron	0	0.27	8E-10	9.096910013008054		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4p16.3	4	1699590	SLBP/FGFR3	SLBP			7884			rs2247341-A	rs2247341	0	2247341	cds-synon	0	0.36	2E-11	10.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q24.3	11	128716260	FLI1	FLI1			2313			rs654723-A	rs654723	0	654723	intron	0	0.62	4E-11	10.39794000867204		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	13q31.3	13	91372320	GPC5	MIR92A1 - GPC5	407048	2262		       20.93	       26.36	rs7319045-A	rs7319045	0	7319045	Intergenic	1	0.4	1E-11	11		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q24.3	17	70094066	KCNJ16/KCNJ2	KCNJ16			3773			rs11867479-T	rs11867479	0	11867479	intron	0	0.34	2E-10	9.698970004336017		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.11	19	17172493	MYO9B	MYO9B			4650			rs2279008-T	rs2279008	0	2279008	intron	0	0.74	3E-8	7.522878745280337		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q14.1	6	81090645	FAM46A	RPL17P25 - FAM46A	442232	55603		      716.04	      655.09	rs310405-A	rs310405	0	310405	Intergenic	1	0.52	2E-13	12.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q33.1	9	116360063	PAPPA	PAPPA			5069			rs751543-T	rs751543	0	751543	intron	0	0.72	7E-10	9.154901959985741		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q21.33	9	86501713	ZCCHC6	RPS6P13 - GAS1	392358	2619		      125.97	      442.65	rs8181166-C	rs8181166	0	8181166	Intergenic	1	0.53	3E-12	11.52287874528034		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	21q22.11	21	34318486	KCNE2	LINC00310 - KCNE2	114036	9992		      128.57	       45.54	rs2834442-A	rs2834442	0	2834442	Intergenic	1	0.65	5E-12	11.30102999566398		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p11.12	11	54705062	OR4A5	OR4A5			81318			rs5017948-A	rs5017948	0	5017948	nearGene-5	0	0.18	3E-8	7.522878745280337		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16p13.12	16	14294448	MKL2	TRNAT6 - MIR193B	100189086	574455		        8.48	        9.52	rs1659127-A	rs1659127	0	1659127	Intergenic	1	0.34	1E-11	11		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p21	2	46694146	SOCS5	CRIPT - SOCS5	9419	9655		       63.97	        4.81	rs12474201-A	rs12474201	0	12474201	Intergenic	1	0.35	3E-13	12.52287874528034		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q13.3	4	72649596	ADAMTS3	ADAMTS3 - HNRNPA1P67	9508	728019		       80.80	      157.59	rs7697556-T	rs7697556	0	7697556	Intergenic	1	0.47	2E-14	13.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q24.22	8	134625094	ZFAT	ZFAT			57623			rs12680655-C	rs12680655	0	12680655	intron	0	0.6	2E-14	13.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q11.2	17	32016263	LRRC37B	RNA5SP437 - LRRC37B	100873686	114659		       52.33	        4.87	rs17780086-A	rs17780086	0	17780086	Intergenic	1	0.15	3E-8	7.522878745280337		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p23.3	2	24964730	DNAJC27	DNAJC27			51277			rs4665736-T	rs4665736	0	4665736	intron	0	0.54	7E-16	15.15490195998574		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q27.2	3	185830895	IGF2BP2	MIR548AQ - TRA2B	100847078	6434		       62.99	       83.67	rs720390-A	rs720390	0	720390	Intergenic	1	0.39	2E-14	13.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p21.1	7	19576899	TWISTNB	FERD3L - TWISTNB	222894	221830		      431.48	      118.56	rs4470914-T	rs4470914	0	4470914	Intergenic	1	0.18	9E-10	9.045757490560675		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q34.3	9	136220024	QSOX2	QSOX2			169714			rs7849585-T	rs7849585	0	7849585	intron	0	0.33	5E-14	13.30102999566398		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16q24.3	16	88710834	CTU2/GALNS	CTU2			348180			rs8052560-A	rs8052560	0	8052560	intron	0	0.79	3E-8	7.522878745280337		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q12	4	56957310	POLR2B	REST - NOA1	5978	84273		       21.47	        6.04	rs17081935-T	rs17081935	0	17081935	Intergenic	1	0.2	4E-11	10.39794000867204		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q31.1	5	135021015	PITX1	CATSPER3 - PITX1	347732	5307		        9.31	        6.72	rs526896-T	rs526896	0	526896	Intergenic	1	0.73	2E-13	12.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.31	9	92666838	IPPK	IPPK			64768			rs9969804-A	rs9969804	0	9969804	intron	0	0.44	8E-17	16.09691001300806		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.1	9	88220811	SPIN1	SPATA31C2 - RPSAP49	645961	401537		       82.34	      103.57	rs2778031-T	rs2778031	0	2778031	Intergenic	1	0.24	9E-13	12.04575749056067		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q31.2	9	106836765	ZNF462	MIR8081 - ZNF462	102465995	58499		      235.74	       23.39	rs7027110-A	rs7027110	0	7027110	Intergenic	1	0.23	2E-13	12.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	22q12.3	22	32660355	SYN3	SYN3			8224			rs4821083-T	rs4821083	0	4821083		0	0.84	3E-10	9.522878745280336		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q42.13	1	227724182	JMJD4	VN1R15P - JMJD4	100312804	65094		       64.45	        7.01	rs10799445-A	rs10799445	0	10799445	Intergenic	1	0.77	2E-13	12.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q14.3	5	89058858	MEF2C	MEF2C-AS1 - MIR3660	101929423	100500825		       26.48	      957.76	rs10037512-T	rs10037512	0	10037512	Intergenic	1	0.56	2E-18	17.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q34.11	9	130588697	FUBP3	FUBP3			8939			rs7466269-A	rs7466269	0	7466269	intron	0	0.64	3E-17	16.52287874528034		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12p11.22	12	28381482	CCDC91	CCDC91			55297			rs2638953-C	rs2638953	0	2638953	intron	0	0.68	7E-17	16.15490195998574		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19q13.2	19	41431190	ATP5SL	ATP5SL			55101			rs17318596-A	rs17318596	0	17318596	intron	0	0.36	5E-16	15.30102999566398		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q26.31	3	172447937	GHSR	GHSR			2693			rs572169-T	rs572169	0	572169	cds-synon	0	0.31	3E-18	17.52287874528034		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12p12.2	12	20704533	SLCO1C1	SLCO1C1			53919			rs10770705-A	rs10770705	0	10770705	intron	0	0.33	8E-18	17.09691001300806		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q35	2	217407175	TNS1	DIRC3			729582			rs1351164-T	rs1351164	0	1351164	intron	0	0.79	2E-14	13.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5p13.3	5	32830415	NPR3	NPR3 - RPS8P8	4883	728553		       38.69	      331.74	rs1173727-T	rs1173727	0	1173727	Intergenic	1	0.4	2E-21	20.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q22.32	6	126530014	C6orf173	MIR588 - VIMP1	693173	100130535		       45.30	       72.34	rs1490384-T	rs1490384	0	1490384	Intergenic	1	0.5	4E-21	20.39794000867204		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q12	14	24361644	NFATC4	RIPK3 - NFATC4	11035	4776		       21.61	        5.27	rs1950500-T	rs1950500	0	1950500	Intergenic	1	0.29	2E-18	17.69897000433602		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16p13.3	16	2199375	CASKIN1	CASKIN1 - MLST8	57524	64223		        2.90	        5.80	rs26868-A	rs26868	0	26868	Intergenic	1	0.46	9E-17	16.04575749056067		    .03	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p14.1	3	67365898	SUCLG2	SUCLG2			8801			rs17806888-T	rs17806888	0	17806888	intron	0	0.88	2E-9	8.698970004336019		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.3	19	3428836	NFIC	NFIC			4782			rs7507204-C	rs7507204	0	7507204	intron	0	0.24	4E-16	15.39794000867204		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q31.2	2	177819993	PDE11A	PDE11A			50940			rs7567851-C	rs7567851	0	7567851	intron	0	0.08	3E-8	7.522878745280337		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q15	12	69433878	FRS2	RPS26P45 - FRS2	100271570	10818		       10.88	       36.47	rs10748128-T	rs10748128	0	10748128	Intergenic	1	0.35	2E-20	19.69897000433602		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q13.5	11	75571007	SERPINH1	SERPINH1			871			rs634552-T	rs634552	0	634552	intron	0	0.14	4E-13	12.39794000867204		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	6	31412752	MICA	MICA			100507436			rs2256183-A	rs2256183	0	2256183	intron	0	0.45	8E-29	28.09691001300805		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7p15.1	7	28150327	JAZF1	JAZF1			221895			rs1708299-A	rs1708299	0	1708299	intron	0	0.3	6E-25	24.22184874961636		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q23.2	17	61419288	TBX2	C17orf82 - TBX4	388407	9496		        6.01	       32.49	rs2079795-T	rs2079795	0	2079795	Intergenic	1	0.33	2E-24	23.69897000433602		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q35	2	219043647	CCDC108/IHH	CCDC108 - IHH	255101	3549		        2.10	       10.77	rs12470505-T	rs12470505	0	12470505	Intergenic	1	0.9	9E-12	11.04575749056067		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q23	15	69755818	TLE3	RPLP1 - GEMIN8P1	6176	100128431		      300.27	       47.30	rs10152591-A	rs10152591	0	10152591	Intergenic	1	0.91	3E-10	9.522878745280336		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20q13.13	20	49286482	ZNFX1	ZFAS1			441951			rs237743-A	rs237743	0	237743	intron	0	0.21	1E-20	20		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p31.1	1	78157942	GIPC2	RNA5SP22 - RNFT1P2	100873277	100132264		       63.03	       12.53	rs17391694-T	rs17391694	0	17391694	Intergenic	1	0.12	2E-11	10.69897000433602		    .04	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p15.4	11	2789501	KCNQ1	KCNQ1			3784			rs2237886-T	rs2237886	0	2237886	intron	0	0.11	2E-13	12.69897000433602		    .05	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	18q11.2	18	23147647	CABLES1	CABLES1			91768			rs4800452-T	rs4800452	0	4800452	intron	0	0.79	4E-30	29.39794000867203		    .05	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p22.2	6	26200449	Histone cluster	HIST1H2AD;HIST1H2BF;HIST1H3D			3013;8343;8351			rs806794-A	rs806794	0	806794	nearGene-5;nearGene-3;nearGene-5	0	0.7	1E-39	38.99999999999999		    .05	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q22	12	93584728	SOCS2	SOCS2			8835			rs11107116-T	rs11107116	0	11107116	intron	0	0.22	1E-34	34		    .05	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	7q21.2	7	92618762	CDK6	CDK6			1021			rs42235-T	rs42235	0	42235	intron	0	0.31	8E-47	46.09691001300805		    .06	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.3	15	98651667	IGF1R	IGF1R			3480			rs2871865-C	rs2871865	0	2871865	intron	0	0.88	3E-21	20.52287874528034		    .06	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q12.1	8	56281604	SDR16C5	CHCHD7 - SDR16C5	79145	195814		       62.99	       18.41	rs7460090-T	rs7460090	0	7460090	Intergenic	1	0.87	8E-27	26.09691001300805		    .06	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q14.3	12	65958046	HMGA2	HMGA2			8091			rs1351394-T	rs1351394	0	1351394	intron	0	0.49	2E-65	64.69897000433602		    .06	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.32	9	95493953	PTCH1/FANCC	PTCH1			5727			rs473902-T	rs473902	0	473902	intron	0	0.92	2E-17	16.69897000433602		    .07	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	9q22.32	9	94131663	PTPDC1	CYCSP24 - MIRLET7A1	360177	406881		       93.32	       44.29	rs1257763-A	rs1257763	0	1257763	Intergenic	1	0.04	1E-9	8.999999999999998		    .07	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4p15.31	4	18031865	LCORL	KRT18P63 - RPL21P46	100288868	645174		      118.82	     1781.87	rs6449353-T	rs6449353	0	6449353	Intergenic	1	0.85	7E-46	45.15490195998574		    .08	[NR] unit increase	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.1	15	88852395	ACAN	ACAN			176			rs2280470-?	rs2280470	0	2280470	intron	0	NR	1E-14	14	(Conditioned on rs16942341)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q22	12	93726563	SOCS2	CRADD;LOC101928731			8738;101928731			rs10859563-?	rs10859563	0	10859563	intron;intron	0	NR	3E-12	11.52287874528034	(Conditioned on rs11107116)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q24.1	15	73949165	PML	LOXL1			4016			rs750460-?	rs750460	0	750460	intron	0	NR	4E-12	11.39794000867204	(Conditioned on rs5742915)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	6	34715858	HMGA1	TRNAI25			100189401			rs6938239-?	rs6938239	0	6938239		0	NR	6E-12	11.22184874961635	(Conditioned on rs2780226)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q26.31	3	172251287	GHSR	FNDC3B			64778			rs7652177-?	rs7652177	0	7652177	missense	0	NR	7E-11	10.15490195998574	(Conditioned on rs572169)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10q22.3	10	79165820	PPIF	ZMIZ1			57178			rs7916441-?	rs7916441	0	7916441	intron	0	NR	6E-10	9.221848749616356	(Conditioned on rs2145998)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5p13.3	5	32768528	NPR3	NPR3			4883			rs3792752-?	rs3792752	0	3792752	intron	0	NR	7E-10	9.154901959985741	(Conditioned on rs1173727)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	8q12.1	8	56183249	SDR16C5	PLAG1			5324			rs10958476-?	rs10958476	0	10958476	intron	0	NR	1E-9	8.999999999999998	(Conditioned on rs7460090)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4q31.21	4	144601606	HHIP	KRT18P51 - HHIP-AS1	391703	646576		       28.61	       41.31	rs2353398-?	rs2353398	0	2353398	Intergenic	1	NR	2E-9	8.698970004336019	(Conditioned on rs7689420)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4p15.31	4	17944809	LCORL	LCORL			254251			rs2724475-?	rs2724475	0	2724475	intron	0	NR	2E-9	8.698970004336019	(Conditioned on rs6449353)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q23.3	17	63930138	GH region	CD79B			974			rs2070776-?	rs2070776	0	2070776	cds-synon	0	NR	9E-9	8.045757490560675	(Conditioned on rs2665838)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q22	17	56762398	NOG	NOG - C17orf67	9241	339210		      166.81	       29.52	rs1401796-?	rs1401796	0	1401796	Intergenic	1	NR	2E-8	7.698970004336018	(Conditioned on rs227724)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.31	6	33691269	HMGA1	ITPR3			3710			rs4711336-?	rs4711336	0	4711336	intron	0	NR	3E-8	7.522878745280337	(Conditiond on rs2780226)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	5q35.1	5	171588619	FBXW11	FGF18 - SMIM23	8817	644994		      130.99	      197.20	rs6892884-?	rs6892884	0	6892884	Intergenic	1	NR	4E-8	7.397940008672037	(Conditioned on rs12153391)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p16.1	2	55862405	EFEMP1	PNPT1 - EFEMP1	87178	2202		      168.50	        3.56	rs1367226-?	rs1367226	0	1367226	Intergenic	1	NR	4E-8	7.397940008672037	(Conditioned on rs3791675)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q24.3	1	172272111	DNM3	DNM3			26052			rs2421992-?	rs2421992	0	2421992	intron	0	NR	5E-8	7.30102999566398	(Conditioned on rs17346452)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6q24.1	6	142206005	GPR126	VTA1			51534			rs225694-?	rs225694	0	225694	intron	0	NR	1E-7	7	(Conditioned on rs7763064)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q35	2	218650036	IHH	ZNF142			7701			rs10187066-?	rs10187066	0	10187066	intron	0	NR	2E-7	6.698970004336019	(Conditioned on rs12470505)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/24/2012	20881960	Lango Allen H	09/29/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20881960	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	6p21.33	6	31171675	MICA	POU5F1			5460			rs879882-?	rs879882	0	879882	nearGene-5	0	NR	2E-7	6.698970004336019	(Conditioned on rs2256183)	NR	NR	Affymetrix,  Illumina [2,834,208] (imputed)	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.26	1E-14	14	(RBC count)	    .09	[0.07-0.11] unit decrease	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-A	rs855791	0	855791	missense	0	0.44	5E-9	8.301029995663981	(MCV)	    .62	[0.41-0.83] unit decrease	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-A	rs855791	0	855791	missense	0	0.44	1E-12	12	(MCH)	    .29	[0.21-0.37] unit decrease	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	6	135097497	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.24	1E-15	15	(MCH)	    .38	[0.29-0.47] unit increase	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.06	3E-9	8.522878745280337	(MCH)	    .49	[0.33-0.65] unit increase	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.06	6E-7	6.221848749616355	(MCV)	   1.09	[NR] unit increase	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	6	25821542	SLC17A1	SLC17A1			6568			rs17342717-T	rs17342717	0	17342717	intron	0	0.10	5E-8	7.30102999566398	(MCH)	    .38	[0.24-0.52] unit increase	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	6	135131014	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      151.58	       50.30	rs6569992-A	rs6569992	0	6569992	Intergenic	1	0.20	6E-9	8.221848749616356	(RBC count)	    .07	[0.05-0.09] unit decrease	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	6	135111414	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      131.98	       69.90	rs9494145-C	rs9494145	0	9494145	Intergenic	1	0.24	3E-15	14.52287874528034	(MCV)	    .98	[0.74-1.22] unit increase	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	6	135131014	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      151.58	       50.30	rs6569992-A	rs6569992	0	6569992	Intergenic	1	0.20	3E-8	7.522878745280337	(MCV)	    .75	[0.48-1.02] unit increase	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6q23.3	6	135131014	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      151.58	       50.30	rs6569992-A	rs6569992	0	6569992	Intergenic	1	0.19	1E-8	8	(MCH)	    .30	[0.19-0.40] unit increase	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	22q12.3	22	37073551	TMPRSS6	TMPRSS6			164656			rs4820268-G	rs4820268	0	4820268	cds-synon	0	0.47	1E-12	12	(MCHC)	    .09	[0.07-0.11] unit decrease	Illumina [489,421]	N
10/15/2010	20927387	Kullo IJ	09/28/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20927387	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.06	3E-9	8.522878745280337	(MCH)	    .49	[NR] unit increase	Illumina [489,421]	N
10/15/2010	20877300	Perroud N	09/28/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20877300	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA	9q21.13	9	72272787	GDA	GDA - RNA5SP285	9615	100873538		       17.97	       26.93	rs11143230-C	rs11143230	0	11143230	Intergenic	1	0.35	8E-7	6.096910013008056	(Whole sample)	   1.88	[NR] 	Illumina [539,199]	N
10/15/2010	20877300	Perroud N	09/28/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20877300	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA	9q21.13	9	72272787	GDA	GDA - RNA5SP285	9615	100873538		       17.97	       26.93	rs11143230-C	rs11143230	0	11143230	Intergenic	1	0.35	7E-6	5.154901959985742	(Escitalopram)	   2.22	[NR] 	Illumina [539,199]	N
10/15/2010	20877300	Perroud N	09/28/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20877300	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA	4p15.2	4	21475367	KCNIP4	KCNIP4			80333			rs358592-?	rs358592	0	358592	intron	0	0.70	3E-6	5.522878745280337	(Escitalopram)	   2.56	[NR] 	Illumina [539,199]	N
10/15/2010	20877300	Perroud N	09/28/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20877300	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA	8p21.1	8	28065871	Intergenic	NUGGC			389643			rs4732812-?	rs4732812	0	4732812	intron	0	0.73	3E-6	5.522878745280337	(Escitalopram)	   2.56	[NR] 	Illumina [539,199]	N
10/15/2010	20876614	Yoon KA	09/28/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20876614	A genome-wide association study reveals susceptibility variants for non-small cell lung cancer in the Korean population.	Non-small cell lung cancer	621 Korean ancestry cases, 1,541 Korean ancestry controls	804 Korean ancestry cases, 1,470 Korean ancestry controls	17p13.2	17	6004123	NR	NLRP1 - WSCD1	22861	23302		      419.61	       64.98	rs9303196-T	rs9303196	0	9303196	Intergenic	1	0.07	8E-6	5.096910013008055		   1.43	[1.14-1.82] 	Affymetrix [246,758]	N
10/15/2010	20876614	Yoon KA	09/28/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20876614	A genome-wide association study reveals susceptibility variants for non-small cell lung cancer in the Korean population.	Non-small cell lung cancer	621 Korean ancestry cases, 1,541 Korean ancestry controls	804 Korean ancestry cases, 1,470 Korean ancestry controls	18p11.31	18	7042912	NR	LAMA1			284217			rs16951095-C	rs16951095	0	16951095	intron	0	0.78	7E-6	5.154901959985742		   1.30	[1.10-1.54] 	Affymetrix [246,758]	N
10/15/2010	20876614	Yoon KA	09/28/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20876614	A genome-wide association study reveals susceptibility variants for non-small cell lung cancer in the Korean population.	Non-small cell lung cancer	621 Korean ancestry cases, 1,541 Korean ancestry controls	804 Korean ancestry cases, 1,470 Korean ancestry controls	3q29	3	195137645	C3orf21	XXYLT1			152002			rs2131877-G	rs2131877	0	2131877	intron	0	0.44	2E-8	7.698970004336018		   1.30	[1.19-1.42] 	Affymetrix [246,758]	N
10/15/2010	20876420	Ingle JN	09/27/2010	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/20876420	Genome-wide associations and functional genomic studies of musculoskeletal adverse events in women receiving aromatase inhibitors.	Adverse response to aromatase inhibitors	293 cases, 585 controls	NA	14q32.13	14	95702794	TCL1A	TCL1B - TCL1A	9623	8115		       10.15	        7.17	rs7158782-?	rs7158782	0	7158782	Intergenic	1	0.11	8E-7	6.096910013008056		   2.13	[1.58-2.87] 	Illumina [551,395]	N
10/07/2010	20876611	Wu Y	09/27/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20876611	Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ.	Adiponectin levels	1,776 Filipino ancestry women	1,774 independent Filipino ancestry offspring	16q23.3	16	82617112	CDH13	MPHOSPH6 - CDH13	10200	1012		      446.89	        9.68	rs3865188-T	rs3865188	0	3865188	Intergenic	1	0.47	4E-30	29.39794000867203		    .11	[0.09-0.13] unit decrease	Affymetrix [2,073,674] (imputed)	N
10/07/2010	20876611	Wu Y	09/27/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20876611	Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ.	Adiponectin levels	1,776 Filipino ancestry women	1,774 independent Filipino ancestry offspring	3q27.3	3	186836503	ADIPOQ	RFC4 - ADIPOQ	5984	9370		       29.81	        6.17	rs864265-G	rs864265	0	864265	Intergenic	1	0.88	1E-19	19		    .13	[0.10-0.16] unit increase	Affymetrix [2,073,674] (imputed)	N
10/07/2010	20876611	Wu Y	09/27/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20876611	Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ.	Adiponectin levels	1,776 Filipino ancestry women	1,774 independent Filipino ancestry offspring	3q27.3	3	186715310	KNG1	KNG1			3827			rs11924390-C	rs11924390	0	11924390	nearGene-5	0	0.50	2E-9	8.698970004336019		    .06	[0.04-0.08] unit decrease	Affymetrix [2,073,674] (imputed)	N
10/15/2010	20872241	Li J	09/26/2010	Breast Cancer Res Treat	http://www.ncbi.nlm.nih.gov/pubmed/20872241	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry women, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	10q26.13	10	121586676	FGFR2	FGFR2			2263			rs1219648-G	rs1219648	0	1219648	intron	0	0.42	2E-13	12.69897000433602		   1.32	[1.22-1.42] 	Illumina [285,984]	N
10/15/2010	20872241	Li J	09/26/2010	Breast Cancer Res Treat	http://www.ncbi.nlm.nih.gov/pubmed/20872241	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry women, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	16q12.1	16	52552429	TOX3	CASC16			643714			rs3803662-A	rs3803662	0	3803662	ncRNA	0	0.30	4E-7	6.397940008672037		   1.22	[1.13-1.32] 	Illumina [285,984]	N
10/15/2010	20872241	Li J	09/26/2010	Breast Cancer Res Treat	http://www.ncbi.nlm.nih.gov/pubmed/20872241	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry women, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	5p12	5	44874903	MRPS30	MRPS30 - HCN1	10884	348980		       59.39	      380.05	rs7716600-A	rs7716600	0	7716600	Intergenic	1	0.23	7E-7	6.154901959985743		   1.24	[1.14-1.34] 	Illumina [285,984]	N
10/15/2010	20872241	Li J	09/26/2010	Breast Cancer Res Treat	http://www.ncbi.nlm.nih.gov/pubmed/20872241	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry women, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	2q35	2	217041109	Intergenic	TNP1 - DIRC3	7141	729582		      181.05	      242.91	rs13387042-?	rs13387042	0	13387042	Intergenic	1	0.53	9E-6	5.045757490560675		   1.18	[1.10-1.27] 	Illumina [285,984]	N
10/07/2010	20871597	Miki D	09/26/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20871597	Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations.	Lung adenocarcinoma	1,004 Japanese ancestry cases, 1,900 Japanese ancestry controls	1,094 East Asian ancestry cases, 9,148 East Asian ancestry controls	3q28	3	189665394	TP63	TP63			8626			rs10937405-C	rs10937405	0	10937405	intron	0	0.67	7E-12	11.15490195998574		   1.31	[1.22-1.42] 	Illumina [432,024]	N
10/07/2010	20871597	Miki D	09/26/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20871597	Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations.	Lung adenocarcinoma	1,004 Japanese ancestry cases, 1,900 Japanese ancestry controls	1,094 East Asian ancestry cases, 9,148 East Asian ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-C	rs2736100	0	2736100	intron	0	0.39	3E-11	10.52287874528034		   1.27	[1.19-1.37] 	Illumina [432,024]	N
10/14/2010	20861866	Kopplin LJ	09/23/2010	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/20861866	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	1q31.3	1	196733680	CFH	CFH			3075			rs1329428-?	rs1329428	0	1329428	intron	0	NR	3E-64	63.52287874528032		   2.78	[NR] 	Affymetrix [>361,556] (imputed)	N
10/14/2010	20861866	Kopplin LJ	09/23/2010	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/20861866	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	10q26.13	10	122454932	ARMS2,HTRA1	ARMS2			387715			rs10490924-T	rs10490924	0	10490924	missense	0	NR	1E-60	59.99999999999999		   2.75	[NR] 	Affymetrix [>361,556] (imputed)	N
10/14/2010	20861866	Kopplin LJ	09/23/2010	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/20861866	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	6p21.33	6	31962685	SKIV2L,BF	SKIV2L			6499			rs429608-?	rs429608	0	429608	intron	0	NR	5E-15	14.30102999566398		   1.85	[NR] 	Affymetrix [>361,556] (imputed)	N
10/14/2010	20861866	Kopplin LJ	09/23/2010	Genes Immun	http://www.ncbi.nlm.nih.gov/pubmed/20861866	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	19p13.3	19	6718376	C3, R102G	C3			718			rs2230199-C	rs2230199	0	2230199	missense	0	NR	1E-8	8		   1.44	[NR] 	Affymetrix [>361,556] (imputed)	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	2q12.1	2	102369762	IL18R1	IL18R1			8809			rs3771166-G	rs3771166	0	3771166	intron	0	0.62	3E-9	8.522878745280337		   1.15	[1.10-1.20] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	6p21.32	6	32658092	HLA-DQ	TRNAI25			100189401			rs9273349-C	rs9273349	0	9273349		0	0.58	7E-14	13.15490195998574		   1.18	[1.13-1.24] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	9p24.1	9	6190076	IL33	RANBP6 - GTF3AP1	26953	100135064		      174.44	        5.96	rs1342326-C	rs1342326	0	1342326	Intergenic	1	0.16	9E-10	9.045757490560675		   1.20	[1.13-1.28] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	15q22.33	15	67154447	SMAD3	SMAD3			4088			rs744910-G	rs744910	0	744910	intron	0	0.49	4E-9	8.397940008672036		   1.12	[1.09-1.16] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	17q12	17	39905943	GSDMB	GSDMB			55876			rs2305480-G	rs2305480	0	2305480	missense	0	0.55	1E-7	7		   1.18	[1.11-1.23] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	17q21.1	17	39965740	GSDMA	GSDMA			284110			rs3894194-A	rs3894194	0	3894194	missense	0	0.45	5E-9	8.301029995663981		   1.17	[1.11-1.23] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	22q12.3	22	37137994	IL2RB	IL2RB			3560			rs2284033-G	rs2284033	0	2284033	intron	0	0.56	1E-8	8		   1.12	[1.08-1.16] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	5q31.1	5	132387596	SLC22A5	SLC22A5			6584			rs2073643-T	rs2073643	0	2073643	intron	0	0.45	2E-7	6.698970004336019		   1.11	[1.06-1.15] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	5q31.1	5	132660151	IL13	IL13			3596			rs1295686-T	rs1295686	0	1295686	intron	0	0.20	1E-7	7		   1.15	[1.09-1.20] 	Illumina [582,892]	N
10/14/2010	20860503	Moffatt MF	09/23/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20860503	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	15q22.2	15	60777789	RORA	RORA			6095			rs11071559-C	rs11071559	0	11071559	intron	0	0.86	1E-7	7		   1.18	[1.11-1.25] 	Illumina [582,892]	N
10/14/2010	20885792	Naj AC	09/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20885792	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	19q13.32	19	44892362	APOE,TOMM40	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	0.20	5E-36	35.30102999566397		   2.94	[2.48-3.47] 	Illumina [483,399]	N
10/14/2010	20885792	Naj AC	09/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20885792	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	6q25.1	6	150885942	MTHFD1L	MTHFD1L			25902			rs11754661-A	rs11754661	0	11754661	intron	0	0.07	2E-10	9.698970004336017		   2.10	[1.67-2.64] 	Illumina [483,399]	N
10/14/2010	20885792	Naj AC	09/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20885792	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	19q13.32	19	44878777	PVRL2	PVRL2			5819			rs6859-A	rs6859	0	6859	intron	0	0.46	1E-7	7		   1.41	[1.24-1.60] 	Illumina [483,399]	N
10/14/2010	20885792	Naj AC	09/23/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20885792	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	2q12.3	2	109018801	Intergenic	EDAR - SH3RF3-AS1	10913	100287216		       29.43	      108.53	rs4676049-A	rs4676049	0	4676049	Intergenic	1	0.08	4E-8	7.397940008672037		   1.76	[1.44-2.15] 	Illumina [483,399]	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q12.2	11	61803876	FADS1	FADS1			3992			rs174548-G	rs174548	0	174548	intron	0	0.17	1E-12	12		    .01	[0.007-0.015] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	9p22.3	9	15296036	TTC39B	TTC39B			158219			rs643531-C	rs643531	0	643531	intron	0	0.07	7E-9	8.154901959985743		    .01	[0.009-0.017] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1q42.13	1	230169242	GALNT2	GALNT2			2590			rs10489615-G	rs10489615	0	10489615	intron	0	0.60	4E-9	8.397940008672036		    .02	[0.01-0.03] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p24.1	2	20976028	APOB	C2orf43 - APOB	60526	338		      152.90	       25.40	rs11902417-G	rs11902417	0	11902417	Intergenic	1	0.78	4E-7	6.397940008672037		    .02	[0.01-0.03] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8p21.3	8	19961817	LPL	LPL			4023			rs325-T	rs325	0	325	intron	0	0.89	8E-26	25.09691001300806		    .05	[0.04-0.06] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	9q31.1	9	104885374	ABCA1	ABCA1			19			rs3890182-G	rs3890182	0	3890182	intron	0	0.88	5E-7	6.30102999566398		    .02	[0.01-0.03] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q23.3	11	116778201	ZNF259, APOA5,APOA4,APOC3,APOA1	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.12	2E-11	10.69897000433602		    .03	[0.02-0.04] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	12q24.11	12	109403135	MYO1H,KCTD10,UBE3B,MMAB,MVK	MYO1H			283446			rs9943753-G	rs9943753	0	9943753	intron	0	0.63	3E-6	5.522878745280337		    .02	[0.01-0.03] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	15q21.3	15	58434545	LIPC	LIPC;LOC101928694			3990;101928694			rs261334-G	rs261334	0	261334	intron;nearGene-3	0	0.20	5E-22	21.30102999566398		    .03	[0.02-0.04] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	16q13	16	56951227	CETP	HERPUD1 - CETP	9709	1071		        7.35	       10.70	rs9989419-G	rs9989419	0	9989419	Intergenic	1	0.60	1E-32	32		    .04	[0.03-0.05] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	16q22.1	16	67674994	GFOD2,LCAT	GFOD2			81577			rs12449157-G	rs12449157	0	12449157	ncRNA	0	0.17	2E-7	6.698970004336019		    .02	[0.01-0.03] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	18q21.1	18	49655298	LIPG	SMUG1P1 - ACAA2	100129143	10449		        4.14	      128.21	rs2156552-T	rs2156552	0	2156552	Intergenic	1	0.81	2E-12	11.69897000433602		    .03	[0.02-0.04] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	6p22.3	6	16196963	MYLIP,GMPR	MRPL42P2 - GMPR	346116	2766		       24.93	       41.62	rs2142672-C	rs2142672	0	2142672	Intergenic	1	0.74	2E-8	7.698970004336018		    .01	[0.007-0.015] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1p32.3	1	55030366	PCSK9	BSND - PCSK9	7809	255738		       21.57	        9.11	rs11206510-T	rs11206510	0	11206510	Intergenic	1	0.77	1E-10	10		    .03	[0.02-0.04] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1p13.3	1	109275216	CELSR2	CELSR2			1952			rs660240-A	rs660240	0	660240	UTR-3	0	0.21	1E-26	26		    .04	[0.03-0.05] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p24.1	2	21063185	APOB	APOB - TDRD15	338	100129278		       19.11	       64.42	rs515135-A	rs515135	0	515135	Intergenic	1	0.19	2E-20	19.69897000433602		    .04	[0.03-0.05] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	5q13.3	5	75360714	HMGCR	HMGCR			3156			rs12916-T	rs12916	0	12916	UTR-3	0	0.62	1E-11	11		    .02	[0.01-0.03] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8q24.13	8	125469835	TRIB1	TRIB1 - LINC00861	10221	100130231		       31.43	      452.69	rs2954021-G	rs2954021	0	2954021	Intergenic	1	0.50	1E-7	7		    .02	[0.01-0.03] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q23.3	11	116736721	BUD13, ZNF259, APOA5,APOA4,APOC3,APOA1	RPL15P15 - BUD13	100128347	84811		      785.92	       11.45	rs1558861-T	rs1558861	0	1558861	Intergenic	1	0.94	2E-6	5.698970004336018		    .03	[0.02-0.04] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19p13.2	19	11127797	LDLR	LDLR			3949			rs2738459-C	rs2738459	0	2738459	intron	0	0.48	7E-6	5.154901959985742		    .02	[0.01-0.03] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19p13.11	19	19296909	SF4,CILP2	SUGP1			57794			rs10401969-T	rs10401969	0	10401969	intron	0	0.91	1E-11	11		    .05	[0.04-0.06] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19q13.32	19	44919689	APOE,APOC1,APOC4,APOC2	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.18	2E-40	39.69897000433601		    .06	[0.05-0.07] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8p23.1	8	9327636	PPP1R3B	LOC157273			157273			rs2126259-A	rs2126259	0	2126259	intron	0	0.13	7E-12	11.15490195998574		    .02	[0.01-0.03] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p24.1	2	20981153	APOB	C2orf43 - APOB	60526	338		      158.02	       20.28	rs6544366-T	rs6544366	0	6544366	Intergenic	1	0.22	2E-7	6.698970004336019		    .04	[0.03-0.05] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q23.3	11	116714271	BUD13,ZNF259,APOA5,APOA4,APOC3,APOA1	RPL15P15 - BUD13	100128347	84811		      763.47	       33.90	rs4938303-T	rs4938303	0	4938303	Intergenic	1	0.75	4E-21	20.39794000867204		    .07	[0.06-0.08] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1p31.3	1	62531167	DOCK7,ANGPTL3	DOCK7			85440			rs1168013-G	rs1168013	0	1168013	intron	0	0.65	6E-8	7.221848749616355		    .04	[0.03-0.05] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p23.3	2	27525757	GCKR	GCKR - C2orf16	2646	84226		        2.07	       50.77	rs1260333-C	rs1260333	0	1260333	Intergenic	1	0.55	2E-19	18.69897000433602		    .05	[0.04-0.06] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	7q11.23	7	73442100	BAZ1B, BCL7B, TBL2, MLXIPL	BAZ1B			9031			rs1178979-A	rs1178979	0	1178979	intron	0	0.80	2E-12	11.69897000433602		    .05	[0.03-0.07] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8p21.3	8	19970337	LPL	LPL - RPL30P9	4023	100270981		        3.08	      143.00	rs10105606-C	rs10105606	0	10105606	Intergenic	1	0.68	4E-26	25.39794000867203		    .07	[0.06-0.08] increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.46	2E-11	10.69897000433602		    .04	[0.03-0.05] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19p13.11	19	19678719	CILP2,ZNF101	ZNF101			94039			rs2304130-G	rs2304130	0	2304130	intron	0	0.09	4E-8	7.397940008672037		    .07	[0.04-0.10] unit decrease	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	4q22.1	4	87109109	AFF1	AFF1			4299			rs442177-A	rs442177	0	442177	intron	0	0.50	3E-10	9.522878745280336		    .02	[0.01-0.03] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	5q11.2	5	56558326	C5orf35	LOC101928448			101928448			rs6867983-T	rs6867983	0	6867983	intron	0	0.12	3E-6	5.522878745280337		    .02	[0.01-0.03] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/17/2010	20864672	Waterworth DM	09/23/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20864672	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q12.2	11	61803876	FADS1	FADS1			3992			rs174548-G	rs174548	0	174548	intron	0	0.17	5E-14	13.30102999566398		    .03	[0.02-0.04] unit increase	Affymetrix, Illumina & Perlegen [2,155,369] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	1q23.1	1	158615625	SPTA1	SPTA1			6708			rs2779116-T	rs2779116	0	2779116	intron	0	0.27	3E-9	8.522878745280337		    .02	[0.01-0.03] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	2q31.1	2	168934928	G6PC2,ABCB11	ABCB11			8647			rs552976-G	rs552976	0	552976	intron	0	0.64	8E-18	17.09691001300806		    .05	[0.04-0.06] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-G	rs1800562	0	1800562	missense	0	0.94	3E-20	19.52287874528034		    .06	[0.05-0.07] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	7p13	7	44189469	GCK	GCK			2645			rs1799884-T	rs1799884	0	1799884	nearGene-5	0	0.18	1E-20	20		    .04	[0.03-0.05] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	8p11.21	8	41772887	ANK1	ANK1			286			rs4737009-A	rs4737009	0	4737009	intron	0	0.24	6E-12	11.22184874961635		    .03	[0.02-0.04] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	10q22.1	10	69333636	HK1	HK1			3098			rs16926246-C	rs16926246	0	16926246	intron	0	0.90	3E-54	53.52287874528033		    .09	[0.08-0.10] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	11q14.3	11	92940662	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      441.70	       28.96	rs1387153-T	rs1387153	0	1387153	Intergenic	1	0.28	4E-11	10.39794000867204		    .03	[0.02-0.04] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	13q34	13	112677554	ATP11A,TUBGCP3	ATP11AUN			400165			rs7998202-G	rs7998202	0	7998202	intron	0	0.14	5E-9	8.301029995663981		    .03	[0.02-0.04] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	17q25.3	17	82727657	FN3K	FN3KRP			79672			rs1046896-T	rs1046896	0	1046896	ncRNA	0	0.31	2E-26	25.69897000433602		    .04	[0.03-0.05] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-A	rs855791	0	855791	missense	0	0.42	3E-14	13.52287874528034		    .03	[0.02-0.04] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20858683	Soranzo N	09/21/2010	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/20858683	Common variants at 10 genomic loci influence hemoglobin A&#x02081;(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	8p11.21	8	41691676	ANK1	ANK1			286			rs6474359-T	rs6474359	0	6474359	intron	0	0.97	1E-8	8		    .06	[0.04-0.08] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/07/2010	20852631	Antoniou AC	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852631	A locus on 19p13 modifies risk of breast cancer in BRCA1 mutation carriers and is associated with hormone receptor-negative breast cancer in the general population.	Breast cancer	1,193 European ancestry cases, 1,190 European ancestry controls	2,974 European ancestry cases, 3,012 European ancestry controls	19p13.11	19	17278895	ABHD8,ANKLE1,C19orf62	BABAM1			29086			rs8170-A	rs8170	0	8170	missense	0	0.17	2E-9	8.698970004336019		   1.26	[1.17-1.35] 	Illumina [555,616]	N
10/07/2010	20852633	Bolton KL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852633	Common variants at 19p13 are associated with susceptibility to ovarian cancer.	Ovarian cancer	1,768 European ancestry cases, 2,353 European ancestry controls	8,739 European ancestry cases, 10,831 European ancestry controls	19p13.11	19	17278895	C19orf62,MERIT40	BABAM1			29086			rs8170-T	rs8170	0	8170	missense	0	NR	4E-6	5.397940008672037	(Susceptibility)	   1.12	[1.07-1.17] 	Illumina [540,573]	N
10/07/2010	20852633	Bolton KL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852633	Common variants at 19p13 are associated with susceptibility to ovarian cancer.	Ovarian cancer	1,768 European ancestry cases, 2,353 European ancestry controls	8,739 European ancestry cases, 10,831 European ancestry controls	19p13.11	19	17283315	ANKLE1	ANKLE1			126549			rs2363956-T	rs2363956	0	2363956	missense	0	NR	1E-7	7	(Susceptibility)	   1.10	[1.06-1.15] 	Illumina [540,573]	N
10/12/2010	20852632	Goode EL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852632	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	2q31.1	2	176177905	HOXD1,HOXD3	HOXD-AS1			401022;102800310			rs2072590-T	rs2072590	0	2072590	ncRNA;nearGene-5	0	NR	5E-14	13.30102999566398		   1.16	[1.12-1.21] 	Illumina [2,056,878] (imputed)	N
10/12/2010	20852632	Goode EL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852632	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	3q25.31	3	156679960	TIPARP	TIPARP;LOC102724343			25976;102724343			rs2665390T-C	rs2665390	0	2665390	intron;nearGene-5	0	NR	3E-7	6.522878745280337		   1.19	[1.11-1.27] 	Illumina [2,056,878] (imputed)	N
10/12/2010	20852632	Goode EL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852632	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	8q24.21	8	128531703	MYC,THEM75	LINC01263 - LINC00977	101927774	728724		      103.79	      684.76	rs10088218-G	rs10088218	0	10088218	Intergenic	1	NR	3E-9	8.522878745280337		   1.19	[1.12-1.25] 	Illumina [2,056,878] (imputed)	N
10/12/2010	20852632	Goode EL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852632	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	17q21.32	17	48334138	SKAP1	SKAP1			8631			rs9303542-G	rs9303542	0	9303542	intron	0	NR	1E-6	5.999999999999999		   1.11	[1.06-1.16] 	Illumina [2,056,878] (imputed)	N
10/12/2010	20852632	Goode EL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852632	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	1p36.12	1	22164231	NR	WNT4 - MIR4418	54361	100616433		       21.21	      102.01	rs7521902-?	rs7521902	0	7521902	Intergenic	1	NR	5E-6	5.301029995663981		   1.12	[1.07-1.18] 	Illumina [2,056,878] (imputed)	N
10/12/2010	20852632	Goode EL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852632	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	11p14.3	11	25186158	NR	LUZP2 - RPL36AP40	338645	554234		      103.52	      402.21	rs12794435-?	rs12794435	0	12794435	Intergenic	1	NR	5E-6	5.301029995663981		   1.16	[1.09-1.23] 	Illumina [2,056,878] (imputed)	N
10/12/2010	20852632	Goode EL	09/19/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20852632	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	17q21.32	17	48279758	NR	SKAP1			8631			rs2084881-?	rs2084881	0	2084881	intron	0	NR	2E-6	5.698970004336018		   1.12	[1.07-1.18] 	Illumina [2,056,878] (imputed)	N
10/07/2010	20877124	Hiura Y	09/18/2010	Circ J	http://www.ncbi.nlm.nih.gov/pubmed/20877124	A genome-wide association study of hypertension-related phenotypes in a Japanese population.	Hypertension	936 Japanese ancestry individuals	6,123 Japanese ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [368,274]	N
10/06/2010	20844546	Adachi S	09/16/2010	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20844546	Meta-analysis of genome-wide association scans for genetic susceptibility to endometriosis in Japanese population.	Endometriosis	696 Japanese ancestry cases, 825 Japanese ancestry controls	NA	1q42.13	1	228860875	RHOU	FTH1P2 - ISCA1P2	2497	100288517		      173.00	      181.22	rs801112-C	rs801112	0	801112	Intergenic	1	0.11	5E-6	5.301029995663981		   1.65	[1.33-2.05] 	Affymetrix [282,838]	N
10/06/2010	20844546	Adachi S	09/16/2010	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20844546	Meta-analysis of genome-wide association scans for genetic susceptibility to endometriosis in Japanese population.	Endometriosis	696 Japanese ancestry cases, 825 Japanese ancestry controls	NA	2q13	2	112771606	IL1A	CKAP2L - IL1A	150468	3552		        6.93	        2.31	rs6542095-C	rs6542095	0	6542095	Intergenic	1	0.72	3E-6	5.522878745280337		   1.50	[1.27-1.78] 	Affymetrix [282,838]	N
10/05/2010	20849430	Franklin CS	09/16/2010	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20849430	The TCF7L2 diabetes risk variant is associated with HbA&#x02081;(C) levels: a genome-wide association meta-analysis.	Glycated hemoglobin levels	1,782 European ancestry individuals	NA	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-C	rs7903146	0	7903146	intron	0	0.72	1E-7	7		    .05	[0.02-0.08] % HbA1C decrease	Illumina [256,587]	N
10/12/2010	20862305	Shu XO	09/16/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20862305	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	10p13	10	12272998	CDC123,CAMK1D	CDC123 - CAMK1D	8872	57118		       22.41	       76.52	rs10906115-A	rs10906115	0	10906115	Intergenic	1	0.57	1E-8	8		   1.13	[1.08-1.18] 	Affymetrix [590,887]	N
10/12/2010	20862305	Shu XO	09/16/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20862305	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	13q31.1	13	80143021	SPRY2	LINC01080 - SPRY2	101515984	10253		      116.36	      192.96	rs1359790-G	rs1359790	0	1359790	Intergenic	1	0.71	6E-9	8.221848749616356		   1.15	[1.10-1.20] 	Affymetrix [590,887]	N
10/12/2010	20862305	Shu XO	09/16/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20862305	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	15q22.2	15	62112183	C2CD4B	NPM1P47 - C2CD4B	100129972	388125		       28.88	       51.36	rs1436955-C	rs1436955	0	1436955	Intergenic	1	0.73	7E-7	6.154901959985743		   1.13	[1.08-1.19] 	Affymetrix [590,887]	N
10/12/2010	20862305	Shu XO	09/16/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20862305	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	10q23.33	10	92705802	HHEX	HHEX - EXOC6	3087	54536		       10.15	      121.03	rs5015480-C	rs5015480	0	5015480	Intergenic	1	0.17	9E-6	5.045757490560675		   1.17	[1.11-1.24] 	Affymetrix [590,887]	N
10/05/2010	20835236	Hysi PG	09/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20835236	A genome-wide association study for myopia and refractive error identifies a susceptibility locus at 15q25.	Refractive error	4,270 European ancestry individuals	13,414 European ancestry individuals	15q25.1	15	79159527	RASGRF1	RASGRF1 - MIR184	5923	406960		       68.65	       50.26	rs939658-G	rs939658	0	939658	Intergenic	1	0.52	2E-9	8.698970004336019		    .15	[0.10-0.20] diopter decrease	Illumina [~2.2 million] (imputed)	N
10/05/2010	20835239	Solouki AM	09/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20835239	A genome-wide association study identifies a susceptibility locus for refractive errors and myopia at 15q14.	Refractive error	5,328 European ancestry individuals	10,280 European ancestry individuals	15q14	15	34713872	GJD2,ACTC1,GOLGA8B	MIR1233-2 - GJD2	100422845	57369		      185.50	       38.57	rs634990-C	rs634990	0	634990	Intergenic	1	0.47	2E-14	13.69897000433602		    .23	[0.228-0.232] diopter increase	Illumina [~2.5 million] (imputed)	N
10/05/2010	20835238	Thorleifsson G	09/12/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20835238	Common variants near CAV1 and CAV2 are associated with primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,263 European ancestry cases, 34,887 European ancestry controls	2,175 European ancestry cases, 2,064 European ancestry controls	7q31.2	7	116522675	CAV1,CAV2	CAV2 - CAV1	858	857		       14.13	        2.11	rs4236601-A	rs4236601	0	4236601	Intergenic	1	0.23	2E-11	10.69897000433602		   1.27	[1.18-1.36] 	Illumina [303,117]	N
10/05/2010	20833655	Cha PC	09/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20833655	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 low dose Japanese ancestry individuals, 701 high dose Japanese ancestry individuals	444 individuals	19p13.12	19	15879621	CYP4F2	CYP4F2			8529			rs2108622-T	rs2108622	0	2108622	missense	0	NR	3E-8	7.522878745280337		NR	NR	Illumina [485,227]	N
10/05/2010	20833655	Cha PC	09/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20833655	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 low dose Japanese ancestry individuals, 701 high dose Japanese ancestry individuals	444 individuals	13q21.1	13	56198562	NR	HNF4GP1 - SPATA2P1	100130462	100873966		      198.11	       15.81	rs1512651-?	rs1512651	0	1512651	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [485,227]	N
10/05/2010	20833655	Cha PC	09/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20833655	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 low dose Japanese ancestry individuals, 701 high dose Japanese ancestry individuals	444 individuals	7q22.3	7	106030821	NR	CDHR3			222256			rs10270308-?	rs10270308	0	10270308	cds-synon	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [485,227]	N
10/05/2010	20833655	Cha PC	09/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20833655	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 low dose Japanese ancestry individuals, 701 high dose Japanese ancestry individuals	444 individuals	16p11.2	16	31096368	VKORC1	VKORC1			79001			rs9923231-?	rs9923231	0	9923231	nearGene-5	0	NR	9E-31	30.04575749056067		NR	NR	Illumina [485,227]	N
10/05/2010	20833655	Cha PC	09/10/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20833655	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 low dose Japanese ancestry individuals, 701 high dose Japanese ancestry individuals	444 individuals	10q23.33	10	94974582	CYP2C9	CYP2C9			1559			rs10509680-?	rs10509680	0	10509680	intron	0	NR	4E-7	6.397940008672037		NR	NR	Illumina [485,227]	N
10/05/2010	20826269	Panicker V	09/10/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20826269	A locus on chromosome 1p36 is associated with thyrotropin and thyroid function as identified by genome-wide association study.	Thyroid function	2,014 European ancestry twins	1,093 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [2,120,505]	N
10/05/2010	20825314	Baratz KH	09/09/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20825314	E2-2 protein and Fuchs's corneal dystrophy.	Fuchs's corneal dystrophy	130 European ancestry cases, 260 European ancestry controls	150 cases, 150 controls	18q21.2	18	55543071	TCF4	TCF4			6925			rs613872-G	rs613872	0	613872	intron	0	0.15	1E-18	18		   5.47	[3.75-7.99] 	Illumina [~370,000]	N
10/05/2010	20825314	Baratz KH	09/09/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20825314	E2-2 protein and Fuchs's corneal dystrophy.	Fuchs's corneal dystrophy	130 European ancestry cases, 260 European ancestry controls	150 cases, 150 controls	3p14.2	3	62051050	PTPRG	PTPRG			5793			rs10490775-A	rs10490775	0	10490775	intron	0	0.10	1E-6	5.999999999999999		   2.30	[1.64-3.22] 	Illumina [~370,000]	N
09/28/2010	20838585	Smith EN	09/09/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20838585	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular disease risk factors	525 European ancestry individuals	2,265 European ancestry individuals	16q13	16	56955678	CETP,HERPUD1	HERPUD1 - CETP	9709	1071		       11.80	        6.25	rs247616-T	rs247616	0	247616	Intergenic	1	0.33	1E-23	23	(HDL-cholesterol)	   2.99	[2.42-3.56] % SD increase	Illumina [545,821]	N
09/28/2010	20838585	Smith EN	09/09/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20838585	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular disease risk factors	525 European ancestry individuals	2,265 European ancestry individuals	19q13.32	19	44912383	APOE	APOC1			341			rs445925-G	rs445925	0	445925	nearGene-5	0	NR	9E-19	18.04575749056067	(LDL-cholesterol)	  11.96	[9.33-14.59] % SD increase	Illumina [545,821]	N
09/28/2010	20838585	Smith EN	09/09/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20838585	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular disease risk factors	525 European ancestry individuals	2,265 European ancestry individuals	Xp21.2	23	29622701	IL1RAPL1	IL1RAPL1			11141			rs7890572-G	rs7890572	0	7890572	intron	0	0.07	1E-7	7	(triglycerides)	    .97	[0.62-1.32] % SD increase, SNPxAGE interaction	Illumina [545,821]	N
09/28/2010	20838585	Smith EN	09/09/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20838585	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular disease risk factors	525 European ancestry individuals	2,265 European ancestry individuals	11q23.3	11	116742944	CADM1,BUD13,APOA5	RPL15P15 - BUD13	100128347	84811		      792.14	        5.23	rs12280753-T	rs12280753	0	12280753	Intergenic	1	0.07	8E-6	5.096910013008055	(triglycerides)	    .69	[0.40-0.98] % SD increase, SNPxAGE interaction	Illumina [545,821]	N
09/28/2010	20838585	Smith EN	09/09/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20838585	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular disease risk factors	525 European ancestry individuals	2,265 European ancestry individuals	20q13.32	20	58589799	APCDD1L,STX16	APCDD1L-AS1			149773			rs127430-G	rs127430	0	127430	intron	0	0.86	1E-6	5.999999999999999	(waist circumference)	    .19	[0.11-0.27] % SD decrease, SNPxAGE interaction	Illumina [545,821]	N
09/28/2010	20838585	Smith EN	09/09/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20838585	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular disease risk factors	525 European ancestry individuals	2,265 European ancestry individuals	11q24.1	11	122083949	SORL1, BLID	SORL1 - MIR100HG	6653	399959		      450.19	        5.15	rs7121446-G	rs7121446	0	7121446	Intergenic	1	0.78	3E-6	5.522878745280337	(waist circumference)	    .15	[0.09-0.21] % SD decrease, SNPxAGE interaction	Illumina [545,821]	N
09/28/2010	20832056	Ikeda M	09/08/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20832056	Genome-wide association study of schizophrenia in a Japanese population.	Schizophrenia	560 Japanese ancestry cases, 548 Japanese ancestry controls	1,511 Japanese ancestry cases, 2,451 Japanese ancestry controls, 479 European ancestry cases, 2,938 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [297,645]	N
09/28/2010	20818381	Yamauchi T	09/05/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20818381	A genome-wide association study in the Japanese population identifies susceptibility loci for type 2 diabetes at UBE2E2 and C2CD4A-C2CD4B.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	10,692 Japanese ancestry cases, 9,597 Japanese ancestry controls, 6,980 European ancestry cases, 8,615 European ancestry controls	15q22.2	15	62104190	C2CD4A,C2CD4B	NPM1P47 - C2CD4B	100129972	388125		       20.88	       59.35	rs7172432-?	rs7172432	0	7172432	Intergenic	1	0.58	9E-14	13.04575749056067		   1.11	[1.08-1.14] 	Illumina [459,359]	N
10/14/2010	20871662	Fu YP	09/02/2010	J Ophthalmol	http://www.ncbi.nlm.nih.gov/pubmed/20871662	Identification of Diabetic Retinopathy Genes through a Genome-Wide Association Study among Mexican-Americans from Starr County, Texas.	Diabetic retinopathy 	103 Mexican-American ancestry cases, 183 Meican-American ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [421,010](imputed)	N
09/27/2010	20802204	Baranzini SE	09/01/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20802204	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	3p26.1	3	4395674	SUMF1	SUMF1			285362			rs794185-?	rs794185	0	794185	intron	0	NR	6E-7	6.221848749616355		NR	NR	Illumina [~500,000]	N
09/27/2010	20802204	Baranzini SE	09/01/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20802204	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	17q22	17	57933599	CUEDC1	CUEDC1			404093			rs8074980-?	rs8074980	0	8074980	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [~500,000]	N
09/27/2010	20802204	Baranzini SE	09/01/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20802204	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	14q12	14	28780143	FOXG1B	C14orf23			387978			rs2038256-?	rs2038256	0	2038256	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [~500,000]	N
09/27/2010	20802204	Baranzini SE	09/01/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20802204	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	4p14	4	37062709	FLJ11017	MIR1255B1 - MIR4801	100313806	100616435		      636.28	      179.20	rs13117816-?	rs13117816	0	13117816	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [~500,000]	N
09/27/2010	20802204	Baranzini SE	09/01/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20802204	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	14q23.3	14	65796245	FUT8	MIR625 - NCOA4P1	693210	326605		      325.06	       81.79	rs8007846-?	rs8007846	0	8007846	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [~500,000]	N
09/27/2010	20808326	Krumbiegel M	09/01/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20808326	Genome-wide association study with DNA pooling identifies variants at CNTNAP2 associated with pseudoexfoliation syndrome.	Pseudoexfoliation syndrome	160 European ancestry cases, 80 European ancestry controls	859 European ancestry cases, 554 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~500,000] (pooled)	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	10p15.1	10	4007811	RP11-433J20.2	MIR6078 - LINC00702	102464829	100652988		       16.55	      199.07	rs2031577-?	rs2031577	0	2031577	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	12q24.31	12	120925921	HNF1A, TCF1	RPL12P33 - HNF1A-AS1	643550	283460		        8.64	       43.92	rs6489785-?	rs6489785	0	6489785	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	12q24.33	12	131040508	GPR133	GPR133			283383			rs3847687-?	rs3847687	0	3847687	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	18q23	18	76389985	ZNF516	ZNF516			9658			rs4891159-?	rs4891159	0	4891159	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	17q25.3	17	81288009	SLC38A10	SLC38A10			124565			rs10445407-?	rs10445407	0	10445407	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	9q21.12	9	71169348	TRPM3	TRPM3			80036			rs4745062-?	rs4745062	0	4745062	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	20q13.33	20	61637438	CDH4	CDH4			1002			rs2024714-?	rs2024714	0	2024714	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	12q24.33	12	131600651	AC117500.2	RPS6P20 - RPS6P21	100271262	100271263		      307.48	       66.83	rs7315621-?	rs7315621	0	7315621	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	19q13.13	19	37834896	AC016582.2	LOC100631378			100631378			rs16975963-?	rs16975963	0	16975963	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	7q33	7	134565570	AKR1B15	AKR1B15			441282			rs4732038-?	rs4732038	0	4732038	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	16p13.3	16	2047157	NTHL1	NTHL1;TSC2			4913;7249			rs2516739-?	rs2516739	0	2516739	intron;nearGene-5	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	9q34.3	9	134812936	COL5A1	COL5A1			1289			rs7874142-?	rs7874142	0	7874142	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	20q13.33	20	61353181	AL365229.1	CDH4			1002			rs4468878-?	rs4468878	0	4468878	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	2p25.1	2	8390126	AC011747.3	LINC00299 - SNRPEP5	339789	100874413		       61.71	      212.96	rs13008689-?	rs13008689	0	13008689	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	4q21.1	4	75968235	SDAD1	SDAD1			55153			rs2273-?	rs2273	0	2273	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q31.3	13	89970201	RP11-388D4.1	RPL7L1P1 - PEX12P1	100129260	121727		      136.15	       21.34	rs2882281-?	rs2882281	0	2882281	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	14q32.11	14	90292547	C14orf102	NRDE2			55051			rs2282032-?	rs2282032	0	2282032	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	3p21.31	3	48445934	RP11-24C3.2	ATRIP			84126			rs9876781-?	rs9876781	0	9876781	nearGene-5	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	6q21	6	106381662	AL109920.3	AIM1			202			rs6568433-?	rs6568433	0	6568433	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q32.2	13	98474049	STK24	STK24			8428			rs9517320-?	rs9517320	0	9517320	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q32.1	13	95028031	ABCC4	ABCC4			10257			rs4148546-?	rs4148546	0	4148546	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q21.33	13	71309082	DACH1	RABEPKP1 - DACH1	100421226	1602		       11.85	      128.88	rs9592783-?	rs9592783	0	9592783	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	11p15.4	11	3015094	CARS	CARS			833			rs739401-?	rs739401	0	739401	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	7p22.3	7	999367	C7orf50	C7orf50			84310			rs10256972-?	rs10256972	0	10256972	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	15q12	15	26766994	GABRB3	GABRB3			2562			rs3212335-?	rs3212335	0	3212335	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	6q27	6	166292681	PRR18	GNG5P1 - PRR18	2789	285800		       52.14	       13.00	rs6915183-?	rs6915183	0	6915183	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	7p22.3	7	1872586	MAD1L1	MAD1L1			8379			rs4721135-?	rs4721135	0	4721135	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q21.2	13	61104778	PCDH20	LINC00378 - MIR3169	101926930	100422973		      408.97	       95.02	rs3106598-?	rs3106598	0	3106598	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	2p16.3	2	50288880	NRXN1	NRXN1			9378			rs1356888-?	rs1356888	0	1356888	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	22q13.33	22	50666252	AC000050.2	ARSA - SHANK3	410	85358		       38.08	        8.39	rs9616906-?	rs9616906	0	9616906	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	22q13.1	22	37217269	RAC2	SSTR3			6753			rs13053175-?	rs13053175	0	13053175	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	22q13.31	22	47136753	TBC1D22A	TBC1D22A			25771			rs5766691-?	rs5766691	0	5766691	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	4p16.3	4	1371339	RP11-1244E8.1	UVSSA			57654			rs13118159-?	rs13118159	0	13118159	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	15q21.3	15	53513628	WDR72	WDR72			256764			rs7168365-?	rs7168365	0	7168365	nearGene-3	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	14q12	14	28552722	FOXG1	RPL26P3 - EIF4A1P12	326298	100462830		       62.33	       41.05	rs7493138-?	rs7493138	0	7493138	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	2p13.3	2	70537556	TGFA	TGFA			7039			rs432203-?	rs432203	0	432203	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	4q28.3	4	136739228	RP11-138I17.1	TERF1P3 - SERF1AP1	646316	100131921		      382.89	      561.78	rs6813479-?	rs6813479	0	6813479	Intergenic	1	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	9q31.3	9	110368883	SVEP1	SVEP1			79987			rs1327533-?	rs1327533	0	1327533	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
07/21/2011	20834067	Yashin AI	09/01/2010	Aging (Albany NY)	http://www.ncbi.nlm.nih.gov/pubmed/20834067	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	21q21.1	21	21537795	NCAM2	NCAM2			4685			rs2826891-?	rs2826891	0	2826891	intron	0	NR	1E-6	5.999999999999999	(less than or equal to)	NR	NR	[~550,000]	N
09/17/2010	20802479	Anttila V	08/29/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20802479	Genome-wide association study of migraine implicates a common susceptibility variant on 8q22.1.	Migraine	2,731 European ancestry cases, 10,747 European ancestry controls	3,202 European ancestry cases, 40,062 European ancestry controls	8q22.1	8	97154685	MTDH,PGCP	LOC101927066			101927066			rs1835740-A	rs1835740	0	1835740	intron	0	0.21	2E-11	10.69897000433602		   1.18	[1.13-1.24] 	Illumina [429,912]	N
09/23/2010	20801718	Laaksovirta H	08/27/2010	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20801718	Chromosome 9p21 in amyotrophic lateral sclerosis in Finland: a genome-wide association study.	Amyotrophic lateral sclerosis	405 European ancestry cases, 497 European ancestry controls	NA	9p21.2	9	27543283	MOBKL2B,IFNK,C9orf72	IFNK - C9orf72	56832	203228		       16.79	        3.26	rs3849942-A	rs3849942	0	3849942	Intergenic	1	0.16	9E-11	10.04575749056067		   2.16	[1.72-2.70] 	Illumina [318,167]	N
09/23/2010	20801718	Laaksovirta H	08/27/2010	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/20801718	Chromosome 9p21 in amyotrophic lateral sclerosis in Finland: a genome-wide association study.	Amyotrophic lateral sclerosis	405 European ancestry cases, 497 European ancestry controls	NA	21q22.11	21	31545981	SOD1	TIAM1			7074			rs13048019-T	rs13048019	0	13048019	intron	0	0.17	3E-8	7.522878745280337		   2.02	[1.61-2.53] 	Illumina [318,167]	N
09/28/2010	20802025	Tang W	08/27/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20802025	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals	2q14.3	2	127419801	PROC	PROC			5624			rs1158867-C	rs1158867	0	1158867	intron	0	0.42	4E-36	35.39794000867203		    .12	[0.10-0.14] ug/ml decrease	Affymetrix [2,461,269]	N
09/28/2010	20802025	Tang W	08/27/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20802025	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals	20q11.22	20	35176751	PROCR	PROCR			10544			rs867186-C	rs867186	0	867186	missense	0	0.10	2E-200	199.698970004336		    .47	[0.44-0.50] ug/ml increase	Affymetrix [2,461,269]	N
09/28/2010	20802025	Tang W	08/27/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20802025	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals	20q11.22	20	35142584	EDEM2	EDEM2			55741			rs6120849-T	rs6120849	0	6120849	intron	0	0.23	7E-37	36.15490195998574		    .14	[0.12-0.16] ug/ml decrease	Affymetrix [2,461,269]	N
09/28/2010	20802025	Tang W	08/27/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20802025	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals	7q11.23	7	73490480	BAZ1B	BAZ1B			9031			rs17145713-T	rs17145713	0	17145713	intron	0	0.20	3E-8	7.522878745280337		    .06	[0.04-0.08] ug/ml decrease	Affymetrix [2,461,269]	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	15q22.2	15	60974897	RORA	RORA			6095			rs12912233-T	rs12912233	0	12912233	intron	0	0.46	6E-7	6.221848749616355		    .15	[NR] unit increase	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	17q12	17	35516493	SLFN12L	TAF5LP1 - SLFN14	645744	342618		       17.31	       31.22	rs8070473-T	rs8070473	0	8070473	Intergenic	1	0.32	2E-6	5.698970004336018		    .16	[NR] unit decrease	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	5p14.3	5	19440059	CDH18	HSPD1P15 - CDH18	646273	1016		      205.52	       32.97	rs349475-T	rs349475	0	349475	Intergenic	1	0.29	2E-6	5.698970004336018		    .18	[NR] unit increase	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	11p15.4	11	7993230	EIF3F	EIF3F			8665			rs12420464-T	rs12420464	0	12420464	intron	0	0.04	3E-6	5.522878745280337		    .38	[NR] unit decrease	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	13q33.3	13	107127968	FAM155A	PPIAP24 - FAM155A	122335	728215		      263.54	       40.56	rs1927745-A	rs1927745	0	1927745	Intergenic	1	0.24	5E-6	5.301029995663981		    .16	[NR] unit decrease	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	16q23.3	16	83250733	CDH13	CDH13			1012			rs10514585-A	rs10514585	0	10514585	intron	0	0.31	5E-6	5.301029995663981		    .15	[NR] unit increase	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	10p11.22	10	33005847	ITGB1	LOC101929475			101929475			rs11009175-A	rs11009175	0	11009175	intron	0	0.17	5E-6	5.301029995663981		    .16	[NR] unit increase	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	7q31.33	7	126999550	GRM8	GRM8			2918			rs17864092-T	rs17864092	0	17864092	intron	0	0.90	6E-6	5.221848749616356		    .17	[NR] unit decrease	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	2p24.1	2	23191780	Intergenic	RNA5SP87 - KLHL29	100873320	114818		      852.78	      193.65	rs1449984-A	rs1449984	0	1449984	Intergenic	1	0.72	7E-6	5.154901959985742		    .15	[NR] unit decrease	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	12q24.32	12	127329196	Intergenic	LOC101927616			101927616			rs10744304-A	rs10744304	0	10744304	intron	0	0.63	9E-6	5.045757490560675		    .15	[NR] unit decrease	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/28/2010	20800221	Terracciano A	08/25/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20800221	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	10q22.1	10	68952306	DDX21	DDX50 - DDX21	79009	9188		        5.46	        3.82	rs2017305-A	rs2017305	0	2017305	Intergenic	1	0.92	9E-6	5.045757490560675		    .22	[NR] unit decrease	Affymetrix & Illumina [up to 2.5 million] (imputed)	N
09/24/2010	20811658	Uhl GR	08/24/2010	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/20811658	Genome-wide association for smoking cessation success in a trial of precessation nicotine replacement.	Smoking cessation	369 European ancestry individuals	NA	14q24.2	14	72417166	RGS6	RGS6			9628			rs7159300-?	rs7159300	0	7159300	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [905,273]	N
09/23/2010	20729852	Abnet CC	08/22/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20729852	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	10q23.33	10	94310618	PLCE1,NOC3L	PLCE1			51196			rs3781264-C	rs3781264	0	3781264	intron	0	0.15	4E-9	8.397940008672036	(Total gastric)	   1.36	[1.23-1.50] 	Illumina [551,152]	N
09/23/2010	20729852	Abnet CC	08/22/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20729852	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	1q22	1	155192276	NR	MUC1			4582			rs4072037-A	rs4072037	0	4072037	cds-synon	0	0.84	4E-7	6.397940008672037	(Total gastric)	   1.33	[1.19-1.49] 	Illumina [551,152]	N
09/23/2010	20729852	Abnet CC	08/22/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20729852	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	10q23.33	10	94298541	PLCE1,NOC3L	PLCE1			51196			rs3765524-T	rs3765524	0	3765524	missense	0	0.207	2E-9	8.698970004336019	(ESCC)	   1.35	[1.22-1.49] 	Illumina [551,152]	N
09/23/2010	20729852	Abnet CC	08/22/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20729852	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	22q12.1	22	28734024	CHEK2,HSCB	CHEK2			11200			rs738722-T	rs738722	0	738722	intron	0	0.25	1E-8	8	(ESCC)	   1.30	[1.19-1.43] 	Illumina [551,152]	N
09/23/2010	20729853	Wang LD	08/22/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20729853	Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies susceptibility loci at PLCE1 and C20orf54.	Esophageal cancer	1,077 Chinese Han ancestry cases, 1,733 Chinese Han ancestry controls	7,673 Chinese Han ancestry cases, 11,013 Chinese Han ancestry controls, 303 Chinese Uygur-Kazakh ancestry cases, 537 Chinese Uygur-Kazakh ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [506,666]	N
09/23/2010	20719862	Vitart V	08/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20719862	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	9q34.3	9	134676205	COL5A1	COL5A1			1289			rs7044529-A	rs7044529	0	7044529	intron	0	NR	5E-8	7.30102999566398		    .13	[0.09-0.18] unit decrease	Illumina [~2 million] (imputed)	N
09/23/2010	20719862	Vitart V	08/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20719862	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	13q14.11	13	40535292	FOXO1	RN7SKP2 - FOXO1	100873846	2308		      127.85	       20.37	rs2755237-A	rs2755237	0	2755237	Intergenic	1	NR	1E-8	8		    .17	[0.11-0.23] unit increase	Illumina [~2 million] (imputed)	N
09/23/2010	20719862	Vitart V	08/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20719862	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	16q24.2	16	88264518	ZNF469,BANP	BANP - ZNF469	54971	84627		      187.20	      162.95	rs12447690-G	rs12447690	0	12447690	Intergenic	1	0.38	6E-22	21.22184874961636		    .16	[0.13-0.19] unit decrease	Illumina [~2 million] (imputed)	N
09/23/2010	20719862	Vitart V	08/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20719862	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	13q12.11	13	22654552	AVGR8,AL354828.1	LINC00540 - FTH1P7	100506622	2500		      378.03	       41.31	rs1034200-C	rs1034200	0	1034200	Intergenic	1	0.22	4E-9	8.397940008672036		    .14	[0.10-0.19] unit decrease	Illumina [~2 million] (imputed)	N
09/23/2010	20719862	Vitart V	08/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20719862	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	15q25.3	15	85282336	PDE8A,AKAP13	ADAMTS7P4 - AKAP13	642935	11214		       11.48	       98.25	rs6496932-C	rs6496932	0	6496932	Intergenic	1	0.22	1E-8	8		    .13	[0.09-0.18] unit increase	Illumina [~2 million] (imputed)	N
09/22/2010	20713499	Huang J	08/16/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20713499	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	11p15.4	11	10369034	ADM	CAND1.11			100130460			rs6484218-A	rs6484218	0	6484218	intron	0	0.14	4E-8	7.397940008672037		NR	NR	Affymetrix & Perlegen [1,574,154] (imputed)	N
09/22/2010	20713499	Huang J	08/16/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20713499	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	22q12.1	22	26007633	MYO18B	MYO18B			84700			rs1001021-A	rs1001021	0	1001021	intron	0	0.02	2E-6	5.698970004336018		NR	NR	Affymetrix & Perlegen [1,574,154] (imputed)	N
09/22/2010	20713499	Huang J	08/16/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20713499	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	13q12.11	13	20635373	IFT88	IFT88			8100			rs7326068-A	rs7326068	0	7326068	intron	0	0.19	3E-6	5.522878745280337		NR	NR	Affymetrix & Perlegen [1,574,154] (imputed)	N
09/22/2010	20713499	Huang J	08/16/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20713499	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	9q21.13	9	73149649	ANXA1	CYP1D1P - ANXA1	100133307	301		       93.05	        2.22	rs3758354-C	rs3758354	0	3758354	Intergenic	1	0.03	3E-6	5.522878745280337		NR	NR	Affymetrix & Perlegen [1,574,154] (imputed)	N
09/22/2010	20713499	Huang J	08/16/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20713499	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	14q13.1	14	33007060	NPAS3	NPAS3			64067			rs4982029-A	rs4982029	0	4982029	intron	0	0.02	4E-6	5.397940008672037		NR	NR	Affymetrix & Perlegen [1,574,154] (imputed)	N
09/22/2010	20711177	Hamza TH	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711177	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	6p21.32	6	32441753	HLA-DRA	HLA-DRA			3122			rs3129882-G	rs3129882	0	3129882	intron	0	0.40	2E-10	9.698970004336017		   1.26	[1.17-1.35] 	Illumina [811,597]	N
09/22/2010	20711177	Hamza TH	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711177	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	4p16.3	4	864544	GAK	GAK			2580			rs11248051-T	rs11248051	0	11248051	intron	0	0.09	3E-9	8.522878745280337		   1.46	[1.29-1.65] 	Illumina [811,597]	N
09/22/2010	20711177	Hamza TH	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711177	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	4q22.1	4	89720189	SNCA	GPRIN3 - SNCA	285513	6622		      412.18	        3.91	rs356220-T	rs356220	0	356220	Intergenic	1	0.36	3E-11	10.52287874528034		   1.38	[1.25-1.52] 	Illumina [811,597]	N
09/22/2010	20711177	Hamza TH	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711177	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	17q21.31	17	46751565	MAPT	NSF			4905			rs199533-C	rs199533	0	199533	cds-synon	0	0.78	1E-6	5.999999999999999		   1.35	[1.19-1.52] 	Illumina [811,597]	N
09/22/2010	20711174	Hor H	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711174	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	14q11.2	14	22533736	TRA@	TRA			6955			rs1154155-G	rs1154155	0	1154155		0	0.15	5E-7	6.30102999566398		   1.54	[1.30-1.95] 	Affymetrix [392,949]	N
09/22/2010	20711174	Hor H	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711174	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	6p21.32	6	32732306	HLA-DQA2	TRNAI25			100189401			rs2858884-A	rs2858884	0	2858884		0	0.81	3E-8	7.522878745280337		   1.79	[1.45-2.17] 	Affymetrix [392,949]	N
09/22/2010	20711176	Nakashima M	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711176	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	1q41	1	222098425	Intergenic	DUSP10 - QRSL1P2	11221	100422330		      356.25	      163.41	rs873549-C	rs873549	0	873549	Intergenic	1	0.28	6E-23	22.22184874961636		   1.77	[1.58-1.99] 	Illumina [452,038]	N
09/22/2010	20711176	Nakashima M	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711176	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	3q23	3	138994862	LOC389151, FOXL2	C3orf72 - PRR23A	401089	729627		       40.87	        9.10	rs1511412-A	rs1511412	0	1511412	Intergenic	1	0.08	2E-13	12.69897000433602		   1.87	[1.58-2.21] 	Illumina [452,038]	N
09/22/2010	20711176	Nakashima M	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711176	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	15q21.3	15	55902679	NEDD4	NEDD4			4734			rs8032158-C	rs8032158	0	8032158	intron	0	0.36	6E-13	12.22184874961636		   1.51	[1.35-1.69] 	Illumina [452,038]	N
09/22/2010	20711176	Nakashima M	08/15/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20711176	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	3p21.31	3	50314769	NR	HYAL1 - HYAL2	3373	8692		        2.39	        3.02	rs11130248-?	rs11130248	0	11130248	Intergenic	1	0.52	5E-7	6.30102999566398		   1.34	[1.19-1.49] 	Illumina [452,038]	N
09/22/2010	20709820	Kong X	08/13/2010	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/20709820	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	12p11.21	12	32227567	BICD1	BICD1			636			rs10844154-C	rs10844154	0	10844154	intron	0	0.58	6E-7	6.221848749616355	(qualitative)	   1.46	[NR] 	Illumina [499,578]	N
09/22/2010	20709820	Kong X	08/13/2010	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/20709820	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	8p23.2	8	2882980	CSMD1	MIR7160 - CSMD1	102465695	64478		      806.34	       52.37	rs641525-T	rs641525	0	641525	Intergenic	1	0.95	5E-7	6.30102999566398	(qualitative)	   2.19	[NR] 	Illumina [499,578]	N
09/22/2010	20709820	Kong X	08/13/2010	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/20709820	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	7p12.1	7	52404754	AC006320.2	CICP17 - POM121L12	642663	285877		     1020.09	      630.90	rs1012036-C	rs1012036	0	1012036	Intergenic	1	0.77	5E-6	5.301029995663981	(qualitative)	   1.47	[NR] 	Illumina [499,578]	N
09/22/2010	20709820	Kong X	08/13/2010	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/20709820	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	10p15.3	10	1588626	ADARB2	ADARB2			105			rs2999399-T	rs2999399	0	2999399	intron	0	0.76	6E-6	5.221848749616356	(qualitative)	   1.47	[NR] 	Illumina [499,578]	N
09/22/2010	20709820	Kong X	08/13/2010	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/20709820	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	10p11.22	10	33942347	PARD3	RPL23P11 - PARD3	100271297	56288		       77.62	      167.21	rs7905537-A	rs7905537	0	7905537	Intergenic	1	0.75	8E-7	6.096910013008056	(quantitative)	   1.85	[NR] HU increase	Illumina [499,578]	N
09/22/2010	20709820	Kong X	08/13/2010	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/20709820	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	5p13.3	5	30661466	CDH6	HPRTP2 - RPL19P11	3254	100270950		      411.99	      392.06	rs9292394-T	rs9292394	0	9292394	Intergenic	1	0.78	2E-6	5.698970004336018	(quantitative)	   1.83	[NR] HU increase	Illumina [499,578]	N
09/22/2010	20709820	Kong X	08/13/2010	Am J Respir Crit Care Med	http://www.ncbi.nlm.nih.gov/pubmed/20709820	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	10q11.21	10	44824206	AL139 119.2	TMEM72-AS1			220980			rs7911712-A	rs7911712	0	7911712	intron	0	0.15	6E-6	5.221848749616356	(quantitative)	   2.05	[NR] HU increase	Illumina [499,578]	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	2p23.3	2	27519736	GCKR,IFT172,FNDC4,C2orf16	GCKR			2646			rs780093-T	rs780093	0	780093	intron	0	NR	7E-6	5.154901959985742		    .02	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	9p22.3	9	15157979	C9orf52	PSIP1P1 - TTC39B	353329	158219		      101.38	       12.87	rs1780159-T	rs1780159	0	1780159	Intergenic	1	NR	6E-6	5.221848749616356		    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	3q21.1	3	122274400	CASR,CSTA,WDR5B,KPNA1,C3orf28,CCDC58	CASR			846			rs17251221-G	rs17251221	0	17251221	intron	0	0.14	2E-22	21.69897000433602		    .06	[0.05-0.07] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	17p13.3	17	1730810	PRPF8,MGC14376,WDR81,SMYD4,SERPINF1,SERPINF2	WDR81			124997			rs12150338-T	rs12150338	0	12150338	cds-synon	0	NR	7E-7	6.154901959985743		    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	11p15.4	11	2932493	SLC22A18,PHLDA2,CDKN1C,NAP1L4	PHLDA2 - NAP1L4	7262	4676		        3.07	       11.94	rs3847646-T	rs3847646	0	3847646	Intergenic	1	NR	5E-6	5.301029995663981		    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	6p24.3	6	10163735	Intergenic	OFCC1			266553			rs13195786-?	rs13195786	0	13195786	intron	0	NR	7E-6	5.154901959985742		    .03	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	20q13.2	20	53733353	Intergenic	RNU7-14P - SUMO1P1	100147762	391257		       64.60	      141.15	rs6091737-T	rs6091737	0	6091737	Intergenic	1	NR	6E-6	5.221848749616356		    .02	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	6q11.1	6	62450242	Intergenic	KHDRBS2 - FKBP1C	202559	642489		      164.05	      761.21	rs682238-C	rs682238	0	682238	Intergenic	1	NR	3E-6	5.522878745280337		    .03	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	3p12.3	3	78304441	Intergenic	VDAC1P7 - MRPS17P3	100310839	359757		      986.83	      220.66	rs9831754-T	rs9831754	0	9831754	Intergenic	1	NR	8E-6	5.096910013008055		    .02	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/21/2010	20705733	O'Seaghdha CM	08/12/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20705733	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	2q37.1	2	233364596	SAG,DGKD	DGKD			8527			rs838705-A	rs838705	0	838705	intron	0	NR	9E-6	5.045757490560675		    .02	[NR] unit decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European Ancestry cases	NA	1q43	1	237940201	ZP4	ZP4 - MTND2P27	57829	100873232		       49.28	        1.26	rs2499604-A	rs2499604	0	2499604	Intergenic	1	0.44	2E-6	5.698970004336018		    .39	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European Ancestry cases	NA	12p13.31	12	9218736	PZP	TPT1P12 - A2MP1	100421480	3		       62.21	        9.80	rs6487679-G	rs6487679	0	6487679	Intergenic	1	0.16	1E-6	5.999999999999999		    .40	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European Ancestry cases	NA	4q32.3	4	168488807	DDX60L,PALLD	DDX60L - PALLD	91351	23022		        8.29	        8.26	rs2710833-A	rs2710833	0	2710833	Intergenic	1	0.17	6E-7	6.221848749616355		    .41	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European Ancestry cases	NA	1p21.3	1	95226754	Intergenic	TMEM56-RWDD3;LOC101928118			100527978;101928118			rs1414896-G	rs1414896	0	1414896	intron;intron	0	0.40	2E-6	5.698970004336018		    .26	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European Ancestry cases	NA	6q23.2	6	134817852	Intergenic	FAM8A6P - MEMO1P2	114182	645175		      213.61	       79.98	rs2049953-C	rs2049953	0	2049953	Intergenic	1	0.30	4E-6	5.397940008672037		    .26	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European Ancestry cases	NA	9q21.13	9	75811009	Intergenic	OTX2P1 - PCSK5	100033409	5125		       86.20	       79.64	rs12344488-A	rs12344488	0	12344488	Intergenic	1	0.07	5E-6	5.301029995663981		    .51	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	10q22.1	10	69828748	COL13A1	COL13A1			1305			rs1227756-G	rs1227756	0	1227756	intron	0	0.46	2E-7	6.698970004336019		    .57	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	11q13.1	11	65582285	LTBP3, EHBP1L1	EHBP1L1			254102			rs6591182-A	rs6591182	0	6591182	missense	0	0.47	9E-7	6.045757490560675		    .54	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	12p13.32	12	3648382	EFCAB4B	EFCAB4B			84766			rs887304-A	rs887304	0	887304	intron	0	0.31	8E-7	6.096910013008056		    .36	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	13q32.2	13	98341776	FARP1	FARP1			10160			rs9584805-G	rs9584805	0	9584805	intron	0	0.35	2E-6	5.698970004336018		    .44	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	11q22.1	11	98595538	Intergenic	RNA5SP347 - CNTN5	100873609	53942		      937.96	      425.44	rs4237591-G	rs4237591	0	4237591	Intergenic	1	0.35	2E-6	5.698970004336018		    .33	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	8p23.1	8	11826954	FDFT1	FDFT1			2222			rs2645424-A	rs2645424	0	2645424	intron	0	0.40	3E-6	5.522878745280337		    .30	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	10p11.23	10	29807699	Intergenic	CKS1BP2 - KIAA1462	246714	57608		      109.05	      205.10	rs2986971-G	rs2986971	0	2986971	Intergenic	1	0.48	3E-6	5.522878745280337		    .49	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	12p12.1	12	22212901	ST8SIA1	ST8SIA1			6489			rs2216228-G	rs2216228	0	2216228	intron	0	0.18	4E-6	5.397940008672037		    .45	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	3q24	3	143337625	Intergenic	SLC9A9			285195			rs7632299-A	rs7632299	0	7632299	intron	0	0.17	4E-6	5.397940008672037		    .45	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	5q21.1	5	100006343	Intergenic	EEF1A1P20 - MTND5P10	100421797	643031		        8.41	       40.63	rs10067427-G	rs10067427	0	10067427	Intergenic	1	0.30	5E-6	5.301029995663981		    .75	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	7q21.11	7	82218335	CACNA2D1	CACNA2D1			781			rs10954668-A	rs10954668	0	10954668	intron	0	0.33	7E-6	5.154901959985742		    .32	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	10q22.1	10	69823442	COL13A1	COL13A1			1305			rs7077164-A	rs7077164	0	7077164	intron	0	0.30	7E-6	5.154901959985742		    .67	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	18q12.1	18	28346095	Intergenic	CDH2 - ARIH2P1	1000	390844		      168.61	      305.44	rs11083271-A	rs11083271	0	11083271	Intergenic	1	0.34	8E-6	5.096910013008055		    .61	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	8p23.1	8	11826954	FDFT1	FDFT1			2222			rs2645424-A	rs2645424	0	2645424	intron	0	0.40	7E-7	6.154901959985743	(NAS)	    .77	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	7p14.2	7	35515178	Intergenic	TBX20 - HERPUD2	57057	64224		      261.08	      117.48	rs343064-A	rs343064	0	343064	Intergenic	1	0.40	3E-8	7.522878745280337	(Fibrosis)	   1.31	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	12q22	12	93156525	Intergenic	LOC643339			643339			rs1836127-A	rs1836127	0	1836127	intron	0	0.42	3E-6	5.522878745280337	(NAS)	    .76	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	19p13.3	19	3318512	Intergenic	CELF5 - NFIC	60680	4782		       21.44	       41.05	rs11669592-A	rs11669592	0	11669592	Intergenic	1	0.45	4E-6	5.397940008672037	(NAS)	   1.31	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	21q22.3	21	43348682	Intergenic	LINC00322 - FLJ41733	100126693	400870		       16.64	       14.68	rs643608-G	rs643608	0	643608	Intergenic	1	0.38	1E-6	5.999999999999999	(Steatosis)	    .74	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	8q24.23	8	135700894	Intergenic	MAPRE1P1 - FLJ45872	80327	401478		       74.86	     2108.53	rs4243849-G	rs4243849	0	4243849	Intergenic	1	0.52	2E-6	5.698970004336018	(Steatosis)	    .14	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	4q31.23	4	148649528	Intergenic	RNA5SP166 - ATP5LP4	100873431	100130396		       91.48	       54.00	rs2358462-G	rs2358462	0	2358462	Intergenic	1	0.44	4E-6	5.397940008672037	(Steatosis)	    .60	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	21q21.2	21	25272769	Intergenic	RNA5SP489 - RPL13AP7	100873731	284821		       70.45	       89.03	rs9977253-G	rs9977253	0	9977253	Intergenic	1	0.33	5E-6	5.301029995663981	(Steatosis)	    .76	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	20q13.33	20	60693652	Intergenic	MIR548AG2 - CDH4	100616440	1002		      129.03	      558.77	rs6027755-A	rs6027755	0	6027755	Intergenic	1	0.39	6E-6	5.221848749616356	(Fibrosis)	   1.09	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	20p12.1	20	14347253	MACROD2	MACROD2			140733			rs6079395-A	rs6079395	0	6079395	intron	0	0.49	7E-6	5.154901959985742	(Fibrosis)	    .92	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	3q24	3	143705980	SLC9A9	SLC9A9			285195			rs2800-G	rs2800	0	2800	intron	0	0.34	3E-6	5.522878745280337	(ALT)	    .61	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	3q24	3	143175569	Intergenic	CHST2 - PBX2P1	9435	5088		       51.56	         .49	rs894177-G	rs894177	0	894177	Intergenic	1	0.34	3E-6	5.522878745280337	(ALT)	    .28	[NR] unit decrease	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	13q12.3	13	28704313	SLC46A3	SLC46A3;RNU6-53P			283537;100873762			rs1305088-A	rs1305088	0	1305088	intron;nearGene-5	0	0.06	9E-6	5.045757490560675	(ALT)	    .58	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	2q31.1	2	177044867	Intergenic	RPL29P8 - RNA5SP112	100131991	100873382		      235.12	       93.83	rs1529093-A	rs1529093	0	1529093	Intergenic	1	0.41	2E-6	5.698970004336018	(BallonTT)	   4.13	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	10q26.13	10	125607576	C10orf122	TEX36			387718			rs10510146-A	rs10510146	1	9422897	intron	0	0.13	7E-6	5.154901959985742	(Ballon TT)	    .23	[NR] unit increase	Illumina [324,623]	N
09/24/2010	20708005	Chalasani N	08/10/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20708005	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	4p15.2	4	25808474	23231	SEL1L3			23231			rs959903-A	rs959903	0	959903	intron	0	0.29	7E-6	5.154901959985742	(Ballon TT)	   3.81	[NR] unit increase	Illumina [324,623]	N
09/17/2010	20698975	Himes BE	08/10/2010	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/20698975	Asthma-susceptibility variants identified using probands in case-control and family-based analyses.	Asthma	359 European ancestry cases, 846 European ancestry controls	583 Costa Rican ancestry trios, 1,181 European ancestry cases, 7,369 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [516,617]	N
09/15/2010	20694013	Davila S	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694013	Genome-wide association study identifies variants in the CFH region associated with host susceptibility to meningococcal disease.	Meningococcal disease	475 European ancestry cases, 4,703 European ancestry controls	929 European ancestry cases, 1,351 European ancestry controls	1q31.3	1	196791287	CFH,CFHR3	CFHR3			10878			rs426736-?	rs426736	0	426736	intron	0	0.84	5E-13	12.30102999566398		   1.59	[1.41-1.82] 	Illumina [518,920]	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	6	32619077	HLA-DRB1	TRNAI25			100189401			rs9271366-?	rs9271366	0	9271366		0	0.85	3E-33	32.52287874528034		   7.69	[5.26-11.11] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	2q24.2	2	162267541	IFIH1	IFIH1			64135			rs1990760-?	rs1990760	0	1990760	missense	0	0.61	7E-10	9.154901959985741		   1.49	[1.32-1.69] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	16p13.13	16	10987392	CLEC16A	CLEC16A			23274			rs6498142-?	rs6498142	0	6498142	intron	0	0.83	2E-7	6.698970004336019		   1.56	[1.30-1.85] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	6p21.32	6	32638107	HLA-DRB1	HLA-DQA1			3117			rs2187668-A	rs2187668	0	2187668	intron	0	0.13	2E-33	32.69897000433601		   2.53	[2.17-2.95] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	1q42.2	1	232383404	SIPA1L2	DISC2 - SIPA1L2	27184	57568		      564.89	       14.56	rs669408-C	rs669408	0	669408	Intergenic	1	0.41	1E-6	5.999999999999999		   1.33	[1.18-1.49] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	11p11.2	11	46357892	DGKZ, MDK, AMBRA1, HARBI1, ATG13, F2, CKAP5	DGKZ			8525			rs11038871-C	rs11038871	0	11038871	intron	0	0.248	2E-6	5.698970004336018		   1.36	[1.19-1.55] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	7q21.3	7	96785743	SHFM1	SHFM1 - MARK2P10	7979	402679		       75.85	       72.42	rs12669076-?	rs12669076	0	12669076	Intergenic	1	0.66	2E-6	5.698970004336018		   1.35	[1.18-1.54] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	3q25.1	3	151862085	AADAC, SUCNR1	AADACL2-AS1			101928142			rs6798928-?	rs6798928	0	6798928	intron	0	0.58	3E-6	5.522878745280337		   1.35	[1.19-1.54] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	8q24.21	8	128234169	PVT1	MIR1208 - LINC01263	100302281	101927774		       83.98	      171.10	rs10492294-?	rs10492294	0	10492294	Intergenic	1	0.81	4E-6	5.397940008672037		   1.49	[1.27-1.75] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	18p11.31	18	5857092	L3MBTL4	MIR3976 - TMEM200C	100616244	645369		       16.26	       32.32	rs11662763-?	rs11662763	0	11662763	Intergenic	1	0.85	5E-6	5.301029995663981		   1.56	[1.30-1.89] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	10q23.31	10	89012072	ACTA2, FAS	FAS			355			rs2234978-A	rs2234978	0	2234978	cds-synon	0	0.31	6E-6	5.221848749616356		   1.32	[1.16-1.50] 	Illumina [2,057,134] (imputed)	N
09/21/2010	20694011	Ferreira RC	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694011	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A 	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	9p21.2	9	27882655	IFNK, LINGO2	CTAGE12P - LINGO2	392298	158038		      271.69	       65.43	rs7029145-A	rs7029145	0	7029145	Intergenic	1	0.466	9E-6	5.045757490560675		   1.29	[1.15-1.46] 	Illumina [2,057,134] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	2q33.3	2	205000109	Intergenic	PARD3B			117583			rs2335704-C	rs2335704	0	2335704	intron	0	0.20	2E-6	5.698970004336018		   1.19	[1.10-1.30] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	18q11.2	18	22610832	GATA6,CTAGE1,RBBP8,CABLES1	RPS4XP18 - UBE2CP2	646583	646595		       23.55	      289.65	rs4331426-G	rs4331426	0	4331426	Intergenic	1	0.48	7E-9	8.154901959985743		   1.19	[1.10-1.30] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	2p15	2	61545122	NR	XPO1 - RPS29P10	7514	100132037		        6.82	       44.37	rs6545883-?	rs6545883	0	6545883	Intergenic	1	0.52	5E-6	5.301029995663981		   1.20	[1.11-1.25] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	4q24	4	104923116	NR	RPL6P14 - TET2	391679	54790		       36.16	      222.76	rs10005603-?	rs10005603	0	10005603	Intergenic	1	0.65	7E-6	5.154901959985742		   1.20	[1.11-1.25] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	6q24.3	6	147379997	NR	STXBP5			134957			rs9373523-?	rs9373523	0	9373523	intron	0	0.81	1E-6	5.999999999999999		   1.30	[1.11-1.43] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	7q32.1	7	129383756	NR	AHCYL2			23382			rs7787531-?	rs7787531	0	7787531	intron	0	0.29	9E-6	5.045757490560675		   1.22	[1.10-1.30] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	8q11.22	8	51304202	NR	CYCSP22 - PXDNL	360175	137902		      541.40	       15.38	rs7821565-?	rs7821565	0	7821565	Intergenic	1	0.61	8E-6	5.096910013008055		   1.20	[1.11-1.25] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	8q21.3	8	89644760	NR	RNA5SP272 - RIPK2	100873525	8767		     1248.21	      112.97	rs160441-T	rs160441	0	160441	Intergenic	1	0.41	8E-6	5.096910013008055		   1.20	[1.10-1.30] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	14q32.13	14	95560816	NR	GLRX5 - TCL6	51218	27004		       16.10	       90.36	rs8005962-?	rs8005962	0	8005962	Intergenic	1	0.63	8E-6	5.096910013008055		   1.20	[1.11-1.25] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	16q23.1	16	75957548	NR	RNA5SP430 - RPL18P13	100873680	441775		       96.39	      277.47	rs1948632-?	rs1948632	0	1948632	Intergenic	1	0.04	8E-6	5.096910013008055		   1.55	[1.30-1.90] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	16q23.3	16	82783986	NR	CDH13;LOC101928446			1012;101928446			rs12386026-?	rs12386026	0	12386026	intron;intron	0	0.04	2E-6	5.698970004336018		   1.66	[1.30-2.00] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	17q12	17	37490447	NR	DUSP14			11072			rs712039-?	rs712039	0	712039	intron	0	0.49	3E-6	5.522878745280337		   1.21	[1.10-1.30] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	18q21.32	18	60441957	NR	MC4R - MRPS5P4	4160	359797		       69.19	       77.88	rs4257308-?	rs4257308	0	4257308	Intergenic	1	0.04	6E-6	5.221848749616356		   1.55	[1.30-1.90] 	Affymetrix [>333,754] (imputed)	N
09/16/2010	20694014	Thye T	08/08/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20694014	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls 	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	19q13.31	19	44428797	NR	ZNF229			7772			rs1434579-?	rs1434579	0	1434579	missense	0	0.06	4E-6	5.397940008672037		   1.46	[1.20-1.70] 	Affymetrix [>333,754] (imputed)	N
09/15/2010	20700438	Hsiung CA	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700438	The 5p15.33 locus is associated with risk of lung adenocarcinoma in never-smoking females in Asia.	Lung adenocarcinoma	584 East Asian ancestry cases, 585 East Asian ancestry controls	2,184 East Asian ancestry cases, 2,515 East Asian ancestry controls	5p15.33	5	1286401	CLPTM1L,TERT	TERT			7015			rs2736100-G	rs2736100	0	2736100	intron	0	0.39	2E-22	21.69897000433602		   1.46	[1.35-1.57] 	Illumina [457,504]	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	1q22	1	155192276	MUC1	MUC1			4582			rs4072037-C	rs4072037	0	4072037	cds-synon	0	0.46	2E-36	35.69897000433601		    .01	[0.008-0.012] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	4q21.1	4	76490987	SHROOM3	SHROOM3			57619			rs13146355-G	rs13146355	0	13146355	intron	0	0.56	6E-13	12.22184874961636		    .01	[0.003-0.007] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	12q21.33	12	89912002	ATP2B1	MRPL2P1 - LINC00615	347894	439916		      158.15	     1006.02	rs7965584-G	rs7965584	0	7965584	Intergenic	1	0.29	1E-16	16		    .07	[0.005-0.009] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	9q21.13	9	74884880	TRPM6	TRPM6			140803			rs11144134-T	rs11144134	0	11144134	intron	0	0.92	8E-15	14.09691001300805		    .01	[0.009-0.013] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	11p14.1	11	30738788	DCDC5	MPPED2 - DCDC5	744	100506627		      152.08	      124.82	rs3925584-C	rs3925584	0	3925584	Intergenic	1	0.45	5E-16	15.30102999566398		    .01	[0.004-0.008] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	16q22.1	16	68349144	PRMT7	PRMT7			54496			rs7197653-C	rs7197653	0	7197653	intron	0	0.15	2E-6	5.698970004336018		    .01	[0.003-0.007] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	2q31.1	2	176127051	HOXD9	HOXD9 - HOXD8	3235	3234		        2.13	        2.64	rs2592394-A	rs2592394	0	2592394	Intergenic	1	0.30	5E-7	6.30102999566398		    .00	[0.002-0.006] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	3q26.2	3	169383111	MDS1	MECOM			2122			rs448378-G	rs448378	0	448378	intron	0	0.47	1E-8	8		    .00	[0.002-0.006] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/15/2010	20700443	Meyer TE	08/05/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20700443	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	11p14.3	11	24657273	LUZP2	LUZP2			338645			rs4561213-G	rs4561213	0	4561213	intron	0	0.53	3E-7	6.522878745280337		    .00	[0.002-0.006] mmol/L decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/14/2010	20732627	Neale BM	08/05/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732627	Case-control genome-wide association study of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	896 European ancestry cases, 2,455 European ancestry controls		NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [1,033,244] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p13.3	1	109275684	CELSR2,PSRC1,SORT1	CELSR2			1952			rs629301-G	rs629301	0	629301	UTR-3	0	0.22	6E-131	130.2218487496164		   5.41	[4.94-5.88] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19q13.32	19	44919689	APOE,APOC1,APOC2	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.17	5E-111	110.301029995664		   6.83	[6.2-7.46] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.11	7E-97	96.15490195998574		   7.09	[6.42-7.76] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2p24.1	2	21041028	APOB	APOB			338			rs1367117-A	rs1367117	0	1367117	missense	0	0.3	4E-96	95.39794000867202		   4.16	[3.73-4.59] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q23.3	11	116778201	APOA1,APOC3,APOA4,APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.13	6E-57	56.22184874961635		   4.68	[4.11-5.25] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	5q13.3	5	75360714	HMGCR	HMGCR			3156			rs12916-C	rs12916	0	12916	UTR-3	0	0.39	9E-47	46.04575749056067		   2.84	[2.45-3.23] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2p21	2	43845437	ABCG5,ABCG8	ABCG8			64241			rs4299376-G	rs4299376	0	4299376	intron	0	0.3	4E-45	44.39794000867204		   3.01	[2.58-3.44] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p31.3	1	62560271	ANGPTL3,DOCK7	DOCK7			85440			rs2131925-G 	rs2131925	0	2131925	intron	0	0.32	5E-41	40.30102999566398		   2.60	[2.21-2.99] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19p13.11	19	19296909	CSPG3,CILP2,PBX4	SUGP1			57794			rs10401969-C	rs10401969	0	10401969	intron	0	0.07	3E-38	37.52287874528033		   4.74	[3.92-5.56] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-A 	rs2954029	0	2954029	Intergenic	1	0.46	5E-36	35.30102999566397		   2.30	[1.93-2.67] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	5q33.3	5	156963286	TIMD4,HAVCR1	TIMD4			91937			rs6882076-T	rs6882076	0	6882076	nearGene-5	0	0.35	7E-28	27.15490195998574		   1.98	[1.59-2.37] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	9q31.1	9	104902020	ABCA1	ABCA1			19			rs1883025-T	rs1883025	0	1883025	intron	0	0.25	3E-27	26.52287874528033		   2.24	[1.77-2.71] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.41	7E-27	26.15490195998574		   1.91	[1.54-2.28] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	16q22.2	16	72074194	HP,HPR,DHX38	HPR;TXNL4B			3250;54957			rs2000999-A	rs2000999	0	2000999	intron;intron	0	0.2	3E-24	23.52287874528033		   2.34	[1.87-2.81] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p32.3	1	55038977	PCSK9	PCSK9			255738			rs2479409-G	rs2479409	0	2479409	nearGene-5	0	0.3	4E-24	23.39794000867204		   1.96	[1.49-2.43] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8p23.1	8	9325848	PPP1R3B	LOC157273			157273			rs9987289-T 	rs9987289	0	9987289	intron	0	0.1	9E-24	23.04575749056067		   3.14	[2.51-3.77] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q12.2	11	61802358	FADS1,FADS2,FADS3	FADS1			3992			rs174546-C 	rs174546	0	174546	UTR-3	0	0.34	2E-22	21.69897000433602		   1.78	[1.39-2.17] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	9q34.2	9	133279427	ABO	ABO - SURF6	28	6838		        4.21	       51.28	rs635634-T 	rs635634	0	635634	Intergenic	1	0.21	9E-21	20.04575749056067		   2.30	[1.81-2.79] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-A	rs1532085	0	1532085	intron	0	0.39	9E-20	19.04575749056067		   1.54	[1.15-1.93] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	18q21.1	18	49634583	LIPG	LIPG - SMUG1P1	9388	100129143		       41.68	       15.77	rs7241918-A 	rs7241918	0	7241918	Intergenic	1	0.17	2E-19	18.69897000433602		   1.94	[1.43-2.45] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.32	6	32444658	HLA	HLA-DRA			3122			rs3177928-A	rs3177928	0	3177928	UTR-3	0	0.16	4E-19	18.39794000867203		   2.31	[1.78-2.84] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q12	20	41043978	TOP1	TOP1			7150			rs6029526-C 	rs6029526	0	6029526	intron	0	0.47	3E-17	16.52287874528034		   1.52	[1.15-1.89] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6q25.3	6	160157828	LPA	SLC22A1			6580			rs1564348-C	rs1564348	0	1564348	intron	0	0.17	1E-16	16		   2.18	[1.65-2.71] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	12q24.31	12	120978847	HNF1A	HNF1A			6927			rs1169288-C	rs1169288	0	1169288	missense	0	0.33	1E-14	14		   1.45	[1.06-1.84] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1q42.3	1	234722850	IRF2BP2,TOMM20	LINC01132			100506810			rs514230-A	rs514230	0	514230	nearGene-5	0	0.48	5E-14	13.30102999566398		   1.36	[0.97-1.75] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.32	7E-14	13.15490195998574		   1.67	[1.22-2.12] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1q41	1	220800221	MOSC1	MARC1			64757			rs2642442-T 	rs2642442	0	2642442	intron	0	0.32	5E-13	12.30102999566398		   1.38	[0.95-1.81] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q13.12	20	44413724	HNF4A	HNF4A			3172			rs1800961-T	rs1800961	0	1800961	missense	0	0.03	6E-13	12.22184874961636		   4.73	[3.44-6.02] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q12.1	8	58476006	CYP7A1	UBXN2B - CYP7A1	137886	1581		       24.51	       14.17	rs2081687-A 	rs2081687	0	2081687	Intergenic	1	0.35	9E-13	12.04575749056067		   1.26	[0.87-1.65] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	12q24.12	12	111634620	BRAP	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-G	rs11065987	0	11065987	Intergenic	1	0.42	7E-12	11.15490195998574		    .96	[0.57-1.35] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q24.2	11	126374057	ST3GAL4	ST3GAL4			6484			rs11220462-T 	rs11220462	0	11220462	intron	0	0.11	2E-11	10.69897000433602		   2.01	[1.36-2.66] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	7p13	7	44539581	NPC1L1	NPC1L1			29881			rs2072183-C	rs2072183	0	2072183	cds-synon	0	0.25	3E-11	10.52287874528034		   2.01	[1.44-2.58] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p36.11	1	25449242	TMEM57,LDLRAP1	TMEM57			55219			rs12027135-A	rs12027135	0	12027135	intron	0	0.47	4E-11	10.39794000867204		   1.22	[0.85-1.59] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p21.31	6	34578783	C6orf106	TRNAI25			100189401			rs2814982-T	rs2814982	0	2814982		0	0.11	5E-11	10.30102999566398		   1.86	[1.21-2.51] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q12	20	40462847	MAFB	HSPE1P1 - MAFB	140895	9935		      529.61	      223.00	rs2902940-G	rs2902940	0	2902940	Intergenic	1	0.29	6E-11	10.22184874961635		   1.38	[0.97-1.79] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q24.1	11	122651667	UBASH3B	GLULP3 - UBASH3B	401708	84959		       37.10	        4.02	rs7941030-C	rs7941030	0	7941030	Intergenic	1	0.38	2E-10	9.698970004336017		    .97	[0.6-1.34] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6q22.1	6	115991730	FRK	FRK			2444			rs9488822-T	rs9488822	0	9488822	intron	0	0.35	2E-10	9.698970004336017		   1.18	[0.79-1.57] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19q13.33	19	48703160	FUT2,FLJ36070	FUT2			2524			rs492602-G	rs492602	0	492602	cds-synon	0	0.49	2E-10	9.698970004336017		   1.27	[0.86-1.68] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	10q25.2	10	112174128	GPAM	GPAM			57678			rs2255141-A	rs2255141	0	2255141	intron	0	0.3	2E-10	9.698970004336017		   1.14	[0.75-1.53] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q11.22	20	35564866	ERGIC3	FER1L4			80307			rs2277862-T	rs2277862	0	2277862	ncRNA	0	0.15	4E-10	9.397940008672037		   1.19	[0.66-1.72] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	7p15.3	7	21567734	DNAH11	DNAH11			8701			rs12670798-T 	rs12670798	0	12670798	intron	0	0.15	7E-10	9.154901959985741		   1.70	[1.15-2.25] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q24.3	8	143969375	PLEC1	PLEC			5339			rs11136341-G	rs11136341	0	11136341	intron	0	0.4	9E-10	9.045757490560675		   1.34	[0.87-1.81] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8p22	8	18415371	NAT2	NAT2 - PSD3	10	23362		       14.16	      111.93	rs1495741-G 	rs1495741	0	1495741	Intergenic	1	0.32	2E-9	8.698970004336019		   1.07	[0.66-1.48] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p22.3	6	16127176	IDOL	MYLIP			29116			rs3757354-T	rs3757354	0	3757354	nearGene-5	0	0.22	3E-9	8.522878745280337		   1.46	[0.99-1.93] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	9p22.3	9	15305380	TTC39B	TTC39B			158219			rs581080-G	rs581080	0	581080	intron	0	0.18	3E-9	8.522878745280337		   1.57	[1.06-2.08] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	3p25.2	3	12587421	RAF1	RAF1			5894			rs2290159-C	rs2290159	0	2290159	intron	0	0.22	4E-9	8.397940008672036		   1.42	[0.97-1.87] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	17q21.32	17	47347749	OSBPL7	EFCAB13			124989			rs7206971-A	rs7206971	0	7206971	intron	0	0.49	1E-8	8		   1.01	[0.62-1.4] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2q21.3	2	135080336	RAB3GAP1	RAB3GAP1			22930			rs7570971-T 	rs7570971	0	7570971	intron	0	0.31	1E-8	8		   1.18	[0.75-1.61] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	8q23.3	8	115636338	TRPS1	TRPS1			7227			rs2737229-C	rs2737229	0	2737229	intron	0	0.3	2E-8	7.698970004336018		   1.11	[0.7-1.52] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	6p22.2	6	26092913	HFE,HIST1H4C	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.06	2E-8	7.698970004336018		   2.16	[1.32-3] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11p15.1	11	18611437	SPTY2D1	SPTY2D1			144108			rs10128711-T 	rs10128711	0	10128711	intron	0	0.29	3E-8	7.522878745280337		   1.06	[0.63-1.49] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p22.1	1	92543881	GVI1,EVI5	EVI5			7813			rs7515577-C	rs7515577	0	7515577	intron	0	0.21	3E-8	7.522878745280337		   1.18	[0.71-1.65] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-G	rs12678919	0	12678919	Intergenic	1	0.12	1E-97	97		   2.25	[2.01-2.49] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-A	rs1532085	0	1532085	intron	0	0.39	3E-96	95.52287874528032		   1.45	[1.29-1.61] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	18q21.1	18	49634583	LIPG	LIPG - SMUG1P1	9388	100129143		       41.68	       15.77	rs7241918-G	rs7241918	0	7241918	Intergenic	1	0.17	3E-49	48.52287874528034		   1.31	[1.11-1.51] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11q23.3	11	116778201	APOA1,APOC3,APOA4,APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.13	5E-47	46.30102999566398		   1.50	[1.28-1.72] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	9q31.1	9	104902020	ABCA1	ABCA1			19			rs1883025-T	rs1883025	0	1883025	intron	0	0.25	2E-33	32.69897000433601		    .94	[0.76-1.12] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	16q22.1	16	67894139	LCAT	PSKH1			5681			rs16942887-A	rs16942887	0	16942887	intron	0	0.12	8E-33	32.09691001300806		   1.27	[1.05-1.49] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	2p24.1	2	21002409	APOB	APOB			338			rs1042034-C	rs1042034	0	1042034	missense	0	0.22	1E-30	30		    .90	[0.72-1.08] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8p23.1	8	9325848	PPP1R3B	LOC157273			157273			rs9987289-A	rs9987289	0	9987289	intron	0	0.09	6E-25	24.22184874961636		   1.21	[0.96-1.46] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11q12.2	11	61802358	FADS1,FADS2,FADS3	FADS1			3992			rs174546 -T	rs174546	0	174546	UTR-3	0	0.36	2E-22	21.69897000433602		    .73	[0.57-0.89] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	20q13.12	20	45925376	PLTP	PLTP - PCIF1	5360	63935		       13.01	        9.30	rs6065906-C	rs6065906	0	6065906	Intergenic	1	0.18	2E-22	21.69897000433602		    .93	[0.73-1.13] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	1q42.13	1	230159944	GALNT2	GALNT2			2590			rs4846914-G	rs4846914	0	4846914	intron	0	0.4	4E-21	20.39794000867204		    .61	[0.47-0.75] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19q13.32	19	44919689	APOE,APOC1,APOC2	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.17	4E-21	20.39794000867204		   1.06	[0.82-1.3] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T 	rs2954029	0	2954029	Intergenic	1	0.44	6E-19	18.22184874961635		    .61	[0.47-0.75] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11p11.2	11	46721697	LRP4,NR1H3	F2			2147			rs3136441-C	rs3136441	0	3136441	intron	0	0.15	3E-18	17.52287874528034		    .78	[0.58-0.98] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19q13.42	19	54288907	LILRA3,LILRB2	MIR4752 - LILRA5	100616171	353514		        6.73	       18.16	rs386000-C	rs386000	0	386000	Intergenic	1	0.2	4E-16	15.39794000867204		    .83	[0.61-1.05] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	20q13.12	20	44413724	HNF4A	HNF4A			3172			rs1800961-T	rs1800961	0	1800961	missense	0	0.03	1E-15	15		   1.88	[1.41-2.35] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	7q32.3	7	130748625	KLF14	KLF14 - MIR29A	136259	407021		       14.59	      128.12	rs4731702-T	rs4731702	0	4731702	Intergenic	1	0.48	1E-15	15		    .59	[0.45-0.73] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.11	12	109562388	MMAB,MVK	MMAB			326625			rs7134594-C	rs7134594	0	7134594	intron	0	0.47	7E-15	14.15490195998574		    .44	[0.3-0.58] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.31	12	124777047	SCARB1	MIR6880 - SCARB1	102466204	949		      439.81	         .58	rs838880-C	rs838880	0	838880	Intergenic	1	0.31	3E-14	13.52287874528034		    .61	[0.43-0.79] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	17q12	17	39657603	STARD3	STARD3			10948			rs11869286-C 	rs11869286	0	11869286	intron	0	0.34	3E-14	13.52287874528034		    .51	[0.35-0.67] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	9p22.3	9	15305380	TTC39B	TTC39B			158219			rs581080-C 	rs581080	0	581080	intron	0	0.14	1E-13	13		    .72	[0.52-0.92] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	16q23.2	16	81501185	CMIP	CMIP			80790			rs2925979-T	rs2925979	0	2925979	intron	0	0.3	2E-11	10.69897000433602		    .45	[0.29-0.61] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	8q23.3	8	115586972	TRPS1	TRPS1			7227			rs2293889-T	rs2293889	0	2293889	intron	0	0.41	6E-11	10.22184874961635		    .44	[0.28-0.6] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	4q24	4	102267552	SLC39A8	SLC39A8			64116			rs13107325-T	rs13107325	0	13107325	missense	0	0.07	7E-11	10.15490195998574		    .84	[0.53-1.15] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	17q24.2	17	68879153	ABCA8	ABCA8			10351			rs4148008-G	rs4148008	0	4148008	intron	0	0.32	2E-10	9.698970004336017		    .42	[0.26-0.58] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	2q24.3	2	164684290	COBLL1	COBLL1			22837			rs12328675-C	rs12328675	0	12328675	UTR-3	0	0.13	3E-10	9.522878745280336		    .68	[0.44-0.92] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.31	12	123975620	CCDC92,ZNF664	ZNF664;ZNF664-FAM101A;LOC102723902			144348;100533183;102723902			rs4765127-T	rs4765127	0	4765127	intron;intron;intron	0	0.34	3E-10	9.522878745280336		    .44	[0.28-0.6] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	1q25.3	1	182199750	ZNF648	LOC100130996			100130996			rs1689800-G	rs1689800	0	1689800		0	0.35	3E-10	9.522878745280336		    .47	[0.31-0.63] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	1p34.3	1	39562508	MACF1,PABPC4	PABPC4			8761			rs4660293-G	rs4660293	0	4660293	intron	0	0.23	4E-10	9.397940008672037		    .48	[0.3-0.66] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	7q11.23	7	73568544	MLXIPL	TBL2			26608			rs17145738-T	rs17145738	0	17145738	nearGene-3	0	0.12	1E-9	8.999999999999998		    .57	[0.33-0.81] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	2q36.3	2	226235982	IRS1	NYAP2 - MIR5702	57624	100847053		      581.96	      422.73	rs2972146-C 	rs2972146	0	2972146	Intergenic	1	0.37	2E-9	8.698970004336019		    .46	[0.3-0.62] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19p13.2	19	11236817	DOCK6,LOC55908	DOCK6			57572			rs737337-C	rs737337	0	737337	cds-synon	0	0.08	3E-9	8.522878745280337		    .64	[0.37-0.91] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	6p21.31	6	34585020	C6orf106	TRNAI25			100189401			rs2814944-A	rs2814944	0	2814944		0	0.16	4E-9	8.397940008672036		    .49	[0.29-0.69] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	17q25.3	17	78407903	PGS1	PGS1			9489			rs4129767-G 	rs4129767	0	4129767	intron	0	0.48	5E-9	8.301029995663981		    .40	[0.24-0.56] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	18q21.32	18	60181790	RPS3A,MC4R	RPS3AP49 - MC4R	400652	4160		       31.38	      189.54	rs12967135-A	rs12967135	0	12967135	Intergenic	1	0.23	7E-9	8.154901959985743		    .42	[0.24-0.6] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.31	12	123311691	SBNO1	SBNO1			55206			rs4759375-T	rs4759375	0	4759375	intron	0	0.06	8E-9	8.096910013008056		    .86	[0.55-1.17] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	15q22.2	15	63104668	LACTB	TPM1 - LACTB	7168	114294		       32.75	       17.13	rs2652834-A	rs2652834	0	2652834	Intergenic	1	0.2	9E-9	8.045757490560675		    .39	[0.19-0.59] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	22q11.21	22	21577779	UBE2L3	UBE2L3			7332			rs181362-T	rs181362	0	181362	intron	0	0.2	1E-8	8		    .46	[0.28-0.64] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q13.3	12	57398797	LRP1	R3HDM2			22864			rs11613352-T 	rs11613352	0	11613352	intron	0	0.24	2E-8	7.698970004336018		    .46	[0.28-0.64] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	6q24.1	6	139508529	CITED2	CITED2 - ATP5F1P6	10370	645440		      133.88	      105.91	rs605066-C	rs605066	0	605066	Intergenic	1	0.42	3E-8	7.522878745280337		    .39	[0.23-0.55] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11q24.1	11	122651667	UBASH3B	GLULP3 - UBASH3B	401708	84959		       37.10	        4.02	rs7941030-G 	rs7941030	0	7941030	Intergenic	1	0.37	3E-8	7.522878745280337		    .31	[0.15-0.47] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	6q26	6	160668785	LPA	LPA - PLG	4018	5340		        2.41	       33.41	rs1084651-A	rs1084651	0	1084651	Intergenic	1	0.16	3E-8	7.522878745280337		    .56	[0.36-0.76] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19p13.2	19	8368312	ANGPTL4	ANGPTL4			51129			rs7255436-C	rs7255436	0	7255436	intron	0	0.47	3E-8	7.522878745280337		    .45	[0.29-0.61] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12p12.2	12	20320824	PDE3A	TCP1P3 - PDE3A	400013	5139		      377.72	       47.26	rs7134375-A	rs7134375	0	7134375	Intergenic	1	0.42	4E-8	7.397940008672037		    .40	[0.24-0.56] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11p15.4	11	10367235	ADM,AMPD3	CAND1.11			100130460			rs2923084-G	rs2923084	0	2923084	intron	0	0.17	5E-8	7.30102999566398		    .41	[0.21-0.61] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	5q11.2	5	54002195	ARL15	ARL15			54622			rs6450176-A	rs6450176	0	6450176	intron	0	0.26	5E-8	7.30102999566398		    .49	[0.31-0.67] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.32	7E-380	379.1549019599858		   3.39	[3.21-3.57] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p13.3	1	109275684	CELSR2,PSRC1,SORT1	CELSR2			1952			rs629301-G	rs629301	0	629301	UTR-3	0	0.22	1E-170	170		   5.65	[5.24-6.06] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	19q13.32	19	44919689	APOE,APOC1,APOC2	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.17	9E-147	146.0457574905607		   7.14	[6.57-7.71] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.11	4E-117	116.397940008672		   6.99	[6.4-7.58] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	2p24.1	2	21041028	APOB	APOB			338			rs1367117-A	rs1367117	0	1367117	missense	0	0.3	4E-114	113.397940008672		   4.05	[3.68-4.42] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	2p21	2	43845437	ABCG5,ABCG8	ABCG8			64241			rs4299376-G	rs4299376	0	4299376	intron	0	0.3	2E-47	46.69897000433602		   2.75	[2.36-3.14] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	5q13.3	5	75360714	HMGCR	HMGCR			3156			rs12916-C	rs12916	0	12916	UTR-3	0	0.39	5E-45	44.30102999566397		   2.45	[2.1-2.8] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-A 	rs2954029	0	2954029	Intergenic	1	0.46	3E-29	28.52287874528033		   1.84	[1.51-2.17] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p32.3	1	55038977	PCSK9	PCSK9			255738			rs2479409-G	rs2479409	0	2479409	nearGene-5	0	0.3	2E-28	27.69897000433602		   2.01	[1.58-2.44] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	11q23.3	11	116778201	APOA1,APOC3,APOA4,APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.13	1E-26	26		   2.85	[2.32-3.38] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	16q22.2	16	72074194	HP,HPR,DHX38	HPR;TXNL4B			3250;54957			rs2000999-A	rs2000999	0	2000999	intron;intron	0	0.2	2E-22	21.69897000433602		   2.00	[1.57-2.43] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	5q33.3	5	156963286	TIMD4,HAVCR1	TIMD4			91937			rs6882076-T	rs6882076	0	6882076	nearGene-5	0	0.35	2E-22	21.69897000433602		   1.67	[1.3-2.04] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	19p13.11	19	19296909	CSPG3,CILP2,PBX4	SUGP1			57794			rs10401969-C	rs10401969	0	10401969	intron	0	0.07	7E-22	21.15490195998574		   3.11	[2.37-3.85] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	9q34.2	9	133279427	ABO	ABO - SURF6	28	6838		        4.21	       51.28	rs635634-T 	rs635634	0	635634	Intergenic	1	0.22	8E-22	21.09691001300805		   2.05	[1.64-2.46] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	11q12.2	11	61802358	FADS1,FADS2,FADS3	FADS1			3992			rs174546-T 	rs174546	0	174546	UTR-3	0	0.35	1E-21	21		   1.71	[1.34-2.08] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	20q12	20	41043978	TOP1	TOP1			7150			rs6029526-T 	rs6029526	0	6029526	intron	0	0.47	3E-19	18.52287874528033		   1.41	[1.08-1.74] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p31.3	1	62560271	ANGPTL3,DOCK7	DOCK7			85440			rs2131925-G 	rs2131925	0	2131925	intron	0	0.32	3E-18	17.52287874528034		   1.59	[1.22-1.96] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6q25.3	6	160157828	LPA	SLC22A1			6580			rs1564348-C	rs1564348	0	1564348	intron	0	0.17	2E-17	16.69897000433602		   1.95	[1.48-2.42] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	12q24.31	12	120978847	HNF1A	HNF1A			6927			rs1169288-C	rs1169288	0	1169288	missense	0	0.33	1E-15	15		   1.42	[1.05-1.79] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	11q24.2	11	126374057	ST3GAL4	ST3GAL4			6484			rs11220462-A	rs11220462	0	11220462	intron	0	0.14	1E-15	15		   1.95	[1.44-2.46] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p21.32	6	32444658	HLA	HLA-DRA			3122			rs3177928-A	rs3177928	0	3177928	UTR-3	0	0.16	2E-15	14.69897000433602		   1.83	[1.36-2.3] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8p23.1	8	9325848	PPP1R3B	LOC157273			157273			rs9987289-T 	rs9987289	0	9987289	intron	0	0.1	7E-15	14.15490195998574		   2.22	[1.65-2.79] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8q24.3	8	143969375	PLEC1	PLEC			5339			rs11136341-G	rs11136341	0	11136341	intron	0	0.4	4E-13	12.39794000867204		   1.40	[0.99-1.81] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-T 	rs3764261	0	3764261	Intergenic	1	0.32	9E-13	12.04575749056067		   1.45	[1.06-1.84] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1q42.3	1	234722850	IRF2BP2,TOMM20	LINC01132			100506810			rs514230-A	rs514230	0	514230	nearGene-5	0	0.48	9E-12	11.04575749056067		   1.13	[0.78-1.48] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p22.3	6	16127176	IDOL	MYLIP			29116			rs3757354-T	rs3757354	0	3757354	nearGene-5	0	0.22	1E-11	11		   1.43	[1.02-1.84] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	7p13	7	44539581	NPC1L1	NPC1L1			29881			rs2072183-A 	rs2072183	0	2072183	cds-synon	0	0.43	4E-11	10.39794000867204		   1.17	[0.8-1.54] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	14q12	14	24414681	CBLN3,KIAA0323	NYNRIN			57523			rs8017377-T 	rs8017377	0	8017377	missense	0	0.48	4E-11	10.39794000867204		   1.17	[0.8-1.54] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1q41	1	220800221	MOSC1	MARC1			64757			rs2642442-T 	rs2642442	0	2642442	intron	0	0.32	6E-11	10.22184874961635		   1.09	[0.7-1.48] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p36.11	1	25449242	TMEM57,LDLRAP1	TMEM57			55219			rs12027135-A	rs12027135	0	12027135	intron	0	0.47	1E-10	10		   1.10	[0.75-1.45] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6p22.2	6	26092913	HFE,HIST1H4C	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.06	6E-10	9.221848749616356		   2.22	[1.46-2.98] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	7p15.3	7	21567734	DNAH11	DNAH11			8701			rs12670798-C	rs12670798	0	12670798	intron	0	0.23	7E-10	9.154901959985741		   1.26	[0.87-1.65] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	12q24.12	12	111634620	BRAP	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-G	rs11065987	0	11065987	Intergenic	1	0.42	2E-9	8.698970004336019		    .97	[0.62-1.32] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	10q25.2	10	112174128	GPAM	GPAM			57678			rs2255141-A 	rs2255141	0	2255141	intron	0	0.29	2E-9	8.698970004336019		   1.08	[0.69-1.47] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	6q22.1	6	115991730	FRK	FRK			2444			rs9488822-T 	rs9488822	0	9488822	intron	0	0.41	3E-9	8.522878745280337		    .89	[0.54-1.24] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	8q12.1	8	58476006	CYP7A1	UBXN2B - CYP7A1	137886	1581		       24.51	       14.17	rs2081687-A 	rs2081687	0	2081687	Intergenic	1	0.35	4E-9	8.397940008672036		    .95	[0.6-1.3] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	17q21.32	17	47347749	OSBPL7	EFCAB13			124989			rs7206971-T 	rs7206971	0	7206971	intron	0	0.35	4E-9	8.397940008672036		    .87	[0.52-1.22] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	20q12	20	40462847	MAFB	HSPE1P1 - MAFB	140895	9935		      529.61	      223.00	rs2902940-G 	rs2902940	0	2902940	Intergenic	1	0.33	1E-8	8		    .98	[0.61-1.35] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	11q23.3	11	116778201	APOA1,APOC3,APOA4,APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.13	7E-240	239.1549019599857		  16.95	[16.01-17.89] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.41	6E-133	132.2218487496163		   8.76	[7.98-9.54] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-G	rs12678919	0	12678919	Intergenic	1	0.12	2E-115	114.698970004336		  13.64	[12.37-14.91] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	7q11.23	7	73568544	MLXIPL	TBL2			26608			rs17145738-G 	rs17145738	0	17145738	nearGene-3	0	0.19	9E-59	58.04575749056067		   7.91	[6.93-8.89] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.47	3E-55	54.52287874528033		   5.64	[4.88-6.4] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2p24.1	2	21002409	APOB	APOB			338			rs1042034-C	rs1042034	0	1042034	missense	0	0.22	1E-45	44.99999999999999		   5.99	[5.11-6.87] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	1p31.3	1	62560271	ANGPTL3,DOCK7	DOCK7			85440			rs2131925-G	rs2131925	0	2131925	intron	0	0.32	9E-43	42.04575749056067		   4.94	[4.16-5.72] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	19q13.32	19	44911194	APOE,APOC1,APOC2	APOE - APOC1	348	341		        1.80	        3.13	rs439401-T	rs439401	0	439401	Intergenic	1	0.36	1E-30	30		   5.50	[4.64-6.36] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	19p13.11	19	19296909	CSPG3,CILP2,PBX4	SUGP1			57794			rs10401969-C	rs10401969	0	10401969	intron	0	0.07	2E-29	28.69897000433602		   7.83	[6.22-9.44] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	11q12.2	11	61802358	FADS1,FADS2,FADS3	FADS1			3992			rs174546-T	rs174546	0	174546	UTR-3	0	0.34	5E-24	23.30102999566398		   3.82	[3.08-4.56] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	20q13.12	20	45925376	PLTP	PLTP - PCIF1	5360	63935		       13.01	        9.30	rs6065906-C 	rs6065906	0	6065906	Intergenic	1	0.24	5E-18	17.30102999566398		   3.32	[2.5-4.14] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	6p21.33	6	31297713	HLA	TRNAI25			100189401			rs2247056-T	rs2247056	0	2247056		0	0.25	2E-15	14.69897000433602		   2.99	[2.17-3.81] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	1q42.13	1	230159944	GALNT2	GALNT2			2590			rs4846914-G 	rs4846914	0	4846914	intron	0	0.39	2E-14	13.69897000433602		   2.76	[2.02-3.5] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8p22	8	18415371	NAT2	NAT2 - PSD3	10	23362		       14.16	      111.93	rs1495741-G 	rs1495741	0	1495741	Intergenic	1	0.22	4E-14	13.39794000867204		   2.97	[2.15-3.79] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-G 	rs1532085	0	1532085	intron	0	0.22	2E-13	12.69897000433602		   2.99	[2.11-3.87] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A 	rs3764261	0	3764261	Intergenic	1	0.45	1E-12	12		   2.88	[2.14-3.62] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	10q21.3	10	63267850	JMJD1C	JMJD1C			221037			rs10761731-T	rs10761731	0	10761731	intron	0	0.43	3E-12	11.52287874528034		   2.38	[1.64-3.12] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	5q33.3	5	156963286	TIMD4,HAVCR1	TIMD4			91937			rs6882076-G 	rs6882076	0	6882076	nearGene-5	0	0.36	4E-12	11.39794000867204		   2.63	[1.87-3.39] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	4q22.1	4	87109109	AFF1,KLHL8	AFF1			4299			rs442177-G	rs442177	0	442177	intron	0	0.41	9E-12	11.04575749056067		   2.25	[1.51-2.99] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	15q15.3	15	43953733	FRMD5	FRMD5			84978			rs2929282-T	rs2929282	0	2929282	intron	0	0.05	2E-11	10.69897000433602		   5.13	[3.44-6.82] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	5q11.2	5	56565959	ANKRD55,MAP3K1	LOC101928448			101928448			rs9686661-T	rs9686661	0	9686661	intron	0	0.2	1E-10	10		   2.57	[1.61-3.53] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2q24.3	2	164656581	COBLL1	LOC101929615			101929615			rs10195252-C	rs10195252	0	10195252	intron	0	0.4	2E-10	9.698970004336017		   2.01	[1.27-2.75] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	12q13.3	12	57398797	LRP1	R3HDM2			22864			rs11613352-T	rs11613352	0	11613352	intron	0	0.23	4E-10	9.397940008672037		   2.70	[1.86-3.54] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	7q11.22	7	72664689	TYW1B	TYW1B			441250			rs13238203-T	rs13238203	0	13238203	intron	0	0.04	1E-9	8.999999999999998		   7.91	[5.28-10.54] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	12q24.31	12	123975620	CCDC92,ZNF664	ZNF664;ZNF664-FAM101A;LOC102723902			144348;100533183;102723902			rs4765127-G 	rs4765127	0	4765127	intron;intron;intron	0	0.34	1E-8	8		   2.42	[1.62-3.22] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	8p23.1	8	10826419	PINX1,XKR6	PINX1;MIR1322			54984;100302166			rs11776767-C	rs11776767	0	11776767	intron;nearGene-5	0	0.37	1E-8	8		   2.01	[1.25-2.77] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	15q15.1	15	42391589	CAPN3	CAPN3			825			rs2412710-A	rs2412710	0	2412710	intron	0	0.02	2E-8	7.698970004336018		   7.00	[4.08-9.92] mg/dL increase	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2q36.3	2	226235982	IRS1	NYAP2 - MIR5702	57624	100847053		      581.96	      422.73	rs2972146-C 	rs2972146	0	2972146	Intergenic	1	0.37	2E-8	7.698970004336018		   1.89	[1.15-2.63] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	10q23.33	10	93079885	CYP26A1	CYP26A1 - NIP7P1	1592	389997		        2.00	       25.86	rs2068888-A	rs2068888	0	2068888	Intergenic	1	0.47	2E-8	7.698970004336018		   2.28	[1.54-3.02] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	3q22.3	3	136207780	MSL2L1	RPL31P23 - PCCB	391581	5096		        1.85	       42.55	rs645040-G	rs645040	0	645040	Intergenic	1	0.22	3E-8	7.522878745280337		   2.22	[1.34-3.1] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	16p11.2	16	30907166	CTF1	CTF2P			100289419			rs11649653-G	rs11649653	0	11649653		0	0.4	3E-8	7.522878745280337		   2.13	[1.37-2.89] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
01/25/2012	20686565	Teslovich TM	08/05/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20686565	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	22q13.1	22	38150026	PLA2G6	PLA2G6			8398			rs5756931-C	rs5756931	0	5756931	intron	0	0.4	4E-8	7.397940008672037		   1.54	[0.8-2.28] mg/dL decrease	Affymetrix, Illumina & Perlegen [~2.6 million] (imputed)	N
09/14/2010	20691247	Verweij KJ	08/04/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/20691247	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	16q12.1	16	51296620	Intergenic	UNGP1 - HNRNPA1P48	57004	642659		       16.92	      349.14	rs4131099-A	rs4131099	0	4131099	Intergenic	1	0.22	4E-6	5.397940008672037	(Novelty Seeking)	    .11	[NR] unit increase	Affymetrix & Illumina [1,252,387] (imputed)	N
09/14/2010	20691247	Verweij KJ	08/04/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/20691247	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	1q21.3	1	152344114	Intergenic	FLG-AS1			339400			rs3120665-G	rs3120665	0	3120665	intron	0	0.16	4E-6	5.397940008672037	(Novelty Seeking)	    .14	[NR] unit decrease	Affymetrix & Illumina [1,252,387] (imputed)	N
09/14/2010	20691247	Verweij KJ	08/04/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/20691247	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	9p21.3	9	22362105	Intergenic	UBA52P6 - DMRTA1	100130239	63951		      349.57	       84.74	rs961831-G	rs961831	0	961831	Intergenic	1	0.09	7E-6	5.154901959985742	(Novelty Seeking)	    .17	[NR] unit decrease	Affymetrix & Illumina [1,252,387] (imputed)	N
09/14/2010	20691247	Verweij KJ	08/04/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/20691247	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	15q25.1	15	78238598	ACSBG1	ACSBG1 - DNAJA4	23205	55466		        3.89	       25.55	rs1533665-G	rs1533665	0	1533665	Intergenic	1	0.36	7E-6	5.154901959985742	(Novelty Seeking)	    .10	[NR] unit decrease	Affymetrix & Illumina [1,252,387] (imputed)	N
09/14/2010	20691247	Verweij KJ	08/04/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/20691247	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	2p16.3	2	50517636	NRXN1	NRXN1			9378			rs10176705-T	rs10176705	0	10176705	intron	0	0.37	9E-6	5.045757490560675	(Novelty Seeking)	    .10	[NR] unit increase	Affymetrix & Illumina [1,252,387] (imputed)	N
09/14/2010	20691247	Verweij KJ	08/04/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/20691247	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	1p31.1	1	76018329	Intergenic	LOC101927342			101927342			rs12753569-G	rs12753569	0	12753569	intron	0	0.49	8E-6	5.096910013008055	(Persistence)	    .10	[NR] unit decrease	Affymetrix & Illumina [1,252,387] (imputed)	N
09/14/2010	20691247	Verweij KJ	08/04/2010	Biol Psychol	http://www.ncbi.nlm.nih.gov/pubmed/20691247	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	9q33.3	9	123589939	DENND1A	DENND1A			57706			rs7852296-A	rs7852296	0	7852296	intron	0	0.09	9E-6	5.045757490560675	(Persistence)	    .17	[NR] unit decrease	Affymetrix & Illumina [1,252,387] (imputed)	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	9q34.11	9	127857358	ENG	RNA5SP296 - AK1	100873549	203		       16.14	        9.12	rs7865146-A	rs7865146	0	7865146	Intergenic	1	0.37	1E-6	5.999999999999999	(DBP)	   1.19	[0.71-1.67] mmHg decrease	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.36	1E-48	47.99999999999999	(HDL)	    .07	[0.06-0.08] mmol/l increase	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	8p21.3	8	20007664	LPL	LPL - RPL30P9	4023	100270981		       40.41	      105.67	rs2083637-G	rs2083637	0	2083637	Intergenic	1	0.24	2E-10	9.698970004336017	(HDL)	    .04	[0.02-0.05] mmol/l increase	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	11q12.2	11	61790331	C11orf10	TMEM258			746			rs102275-?	rs102275	0	102275	intron	0	0.20	6E-7	6.221848749616355	(HDL)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	11q12.2	11	61802358	FADS1	FADS1			3992			rs174546-A	rs174546	0	174546	UTR-3	0	0.18	6E-7	6.221848749616355	(HDL)	    .03	[0.02-0.04] mmol/l decrease	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	11q12.2	11	61830500	FADS2	FADS2			9415			rs1535-G	rs1535	0	1535	intron	0	0.18	4E-7	6.397940008672037	(HDL)	    .03	[0.02-0.04] mmol/l decrease	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	21q22.3	21	43359800	FLJ41733	LOC101928399			101928399			rs496300-G	rs496300	0	496300	intron	0	0.16	4E-7	6.397940008672037	(HDL)	    .03	[0.02-0.05] mmol/l increase	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	12q24.11	12	109930396	GIT2	GIT2			9815			rs2292354-?	rs2292354	0	2292354	UTR-3	0	0.46	7E-6	5.154901959985742	(HDL)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	1p31.1	1	84295665	GLTP	LOC101927633			101927633			rs1085093-?	rs1085093	0	1085093	intron	0	0.45	3E-6	5.522878745280337	(HDL-cholesterol)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16q13	16	56935236	HERPUD1	HERPUD1			9709			rs2217332-?	rs2217332	0	2217332	missense	0	0.19	3E-6	5.522878745280337	(HDL)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	18q21.32	18	60083782	PMAIP1	FAM60CP - RPS3AP49	728115	400652		       66.21	       65.76	rs12957347-?	rs12957347	0	12957347	Intergenic	1	0.36	7E-6	5.154901959985742	(Metabolic syndrome)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	10q24.2	10	97877821	CRTAC1	CRTAC1			55118			rs531676-?	rs531676	0	531676	intron	0	0.45	9E-6	5.045757490560675	(T2D)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-A	rs7903146	0	7903146	intron	0	0.30	7E-7	6.154901959985743	(T2D)	   1.33	[1.19-1.49] 	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	21q22.13	21	37560476	DYRK1A	DYRK1A - KCNJ6	1859	3763		       45.10	       64.00	rs2835810-?	rs2835810	0	2835810	Intergenic	1	0.37	6E-6	5.221848749616356	(WHR)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16p13.12	16	13882499	ERCC4	SHISA9 - ERCC4	729993	2072		      642.08	       37.66	rs2113334-?	rs2113334	0	2113334	Intergenic	1	0.41	3E-6	5.522878745280337	(WHR)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16p13.3	16	2973604	PKMYT1	PKMYT1;PAQR4			9088;124222			rs886427-?	rs886427	0	886427	intron;intron	0	0.28	6E-6	5.221848749616356	(WHR)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	13q13.3	13	38942490	STOML3	ANKRD26P2 - STOML3	646929	161003		        6.29	       23.44	rs9315632-?	rs9315632	0	9315632	Intergenic	1	0.28	3E-6	5.522878745280337	(WHR)	NR	NR	Illumina [308,011]	N
09/13/2010	20694148	Zabaneh D	08/04/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20694148	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	1p22.2	1	91104132	ZNF644	RPL5P6 - HFM1	646784	164045		       79.27	      156.63	rs164898-?	rs164898	0	164898	Intergenic	1	0.27	6E-6	5.221848749616356	(WHR)	NR	NR	Illumina [308,011]	N
08/16/2013	20014019	Dubinsky MC	08/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20014019	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 Other ancestry pediatric cases	NA	13q31.1	13	79314341	RBM26	RBM26			64062			rs1155848-?	rs1155848	0	1155848	UTR-3	0	NR	5E-7	6.30102999566398		  35.73	[NR] 	Illumina [301,742]	N
08/16/2013	20014019	Dubinsky MC	08/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20014019	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 Other ancestry pediatric cases	NA	5q34	5	160545014	Intergenic	MIR146A - ATP10B	406938	23120		       59.56	       18.11	rs1592749-?	rs1592749	0	1592749	Intergenic	1	NR	1E-6	5.999999999999999		   5.95	[NR] 	Illumina [301,742]	N
08/16/2013	20014019	Dubinsky MC	08/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20014019	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 Other ancestry pediatric cases	NA	Xq26.2	23	134188574	NR	MIR106A - LARP1BP3	406899	644403		       18.30	       15.21	rs765132-?	rs765132	0	765132	Intergenic	1	NR	1E-6	5.999999999999999		  35.00	[NR] 	Illumina [301,742]	N
08/16/2013	20014019	Dubinsky MC	08/01/2010	Inflamm Bowel Dis	http://www.ncbi.nlm.nih.gov/pubmed/20014019	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 Other ancestry pediatric cases	NA	6q13	6	71696616	Intergenic	KRT19P1 - RIMS1	441160	22999		      110.58	      190.09	rs4707930-?	rs4707930	0	4707930	Intergenic	1	NR	6E-6	5.221848749616356		   6.60	[NR] 	Illumina [301,742]	N
09/11/2010	20670164	Horinouchi M	08/01/2010	Pediatr Hematol Oncol	http://www.ncbi.nlm.nih.gov/pubmed/20670164	Association of genetic polymorphisms with hepatotoxicity in patients with childhood acute lymphoblastic leukemia or lymphoma.	Acute lymphoblastic leukemia (childhood)	8 Japanese ancestry cases	16 Japanese ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~318,000]	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2p24.1	2	22514115	Intergenic	RNA5SP87 - KLHL29	100873320	114818		      175.11	      871.31	rs17043947-T	rs17043947	0	17043947	Intergenic	1	0.04	2E-7	6.698970004336019		    .07	[NR] unit decrease	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	1p13.3	1	110227601	KCNC4	KCNC4			3749			rs958798-T	rs958798	0	958798	intron	0	0.17	4E-7	6.397940008672037		    .03	[NR] unit increase	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2q14.3	2	127225069	CYP27C1	CYP27C1 - ERCC3	339761	2071		       18.89	       32.22	rs7567389-A	rs7567389	0	7567389	Intergenic	1	0.30	2E-6	5.698970004336018		    .03	[NR] unit decrease	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	14q23.2	14	62051630	SYT16	SYT16			83851			rs6573416-G	rs6573416	0	6573416	intron	0	0.13	3E-6	5.522878745280337		    .03	[NR] unit increase	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2p25.1	2	9784258	Intergenic	YWHAQ - TAF1B	10971	9014		      153.20	       59.18	rs2357266-G	rs2357266	0	2357266	Intergenic	1	0.35	4E-6	5.397940008672037		    .02	[NR] unit decrease	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	12q21.2	12	78092214	NAV3	NAV3			89795			rs300489-A	rs300489	0	300489	intron	0	0.23	5E-6	5.301029995663981		    .03	[NR] unit increase	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	21q21.2	21	22826494	Intergenic	MAPK6PS2 - MIR6130	254664	102466967		      387.43	      252.79	rs7279441-G	rs7279441	0	7279441	Intergenic	1	0.14	8E-6	5.096910013008055		    .03	[NR] unit increase	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	4p15.32	4	16000665	PROM1	PROM1			8842			rs17478107-C	rs17478107	0	17478107	intron	0	0.28	9E-6	5.045757490560675		    .02	[NR] unit decrease	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2q14.3	2	127418464	Intergenic	PROC			5624			rs1799810-T	rs1799810	0	1799810	cds-synon	0	0.41	9E-6	5.045757490560675		    .02	[NR] unit decrease	Illumina [2,380,486] (imputed)	N
09/11/2010	20707712	Mosing MA	08/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20707712	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	13q13.3	13	37957444	Intergenic	TRPC4 - HSPD1P9	7223	646910		       87.64	       35.20	rs9548119-A	rs9548119	0	9548119	Intergenic	1	0.22	9E-6	5.045757490560675		    .03	[NR] unit increase	Illumina [2,380,486] (imputed)	N
11/19/2013	20732625	Neale BM	08/01/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732625	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	7q21.3	7	96733032	SHFM1	SHFM1 - MARK2P10	7979	402679		       23.14	      125.13	rs1464807-T	rs1464807	0	1464807	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix, Illumina & Perlegen [1,206,462] (imputed)	N
11/19/2013	20732625	Neale BM	08/01/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732625	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	8p21.3	8	23244107	CHMP7, TNFRSF10D, TNFRSF10A, LOXL2	CHMP7			91782			rs7463256-T	rs7463256	0	7463256	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix, Illumina & Perlegen [1,206,462] (imputed)	N
11/19/2013	20732625	Neale BM	08/01/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732625	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	20q13.2	20	52967444	Intergenic	RPL36P1 - TSHZ2	140697	128553		       77.06	        4.96	rs10485813-A	rs10485813	0	10485813	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix, Illumina & Perlegen [1,206,462] (imputed)	N
11/19/2013	20732625	Neale BM	08/01/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732625	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	8q22.1	8	93073310	Intergenic	MIR8084 - C8orf87	102467005	389676		       43.47	       60.79	rs1027730-A	rs1027730	0	1027730	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix, Illumina & Perlegen [1,206,462] (imputed)	N
11/19/2013	20732625	Neale BM	08/01/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732625	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	8q13.3	8	69897026	TCEB1	SLCO5A1 - SDCBPP2	81796	100129960		       61.96	       45.90	rs12680109-T	rs12680109	0	12680109	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Affymetrix, Illumina & Perlegen [1,206,462] (imputed)	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	2p24.1	2	20688505	C2orf43	C2orf43			60526			rs13385191-G	rs13385191	0	13385191	intron	0	0.44	8E-8	7.096910013008055		   1.15	[1.10-1.21] 	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	5p15.33	5	1895715	Intergenic	CTD-2194D22.4			101929081			rs12653946-T	rs12653946	0	12653946	intron	0	0.44	4E-18	17.39794000867204		   1.26	[1.20-1.33] 	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	6p21.1	6	41568689	FOXP4	FOXP4			116113			rs1983891-T	rs1983891	0	1983891	intron	0	0.41	8E-8	7.096910013008055		   1.15	[1.09-1.21] 	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	6q22.1	6	116888889	GPRC6A,RFX6	RFX6			222546			rs339331-T	rs339331	0	339331	intron	0	0.37	2E-12	11.69897000433602		   1.22	[1.15-1.28] 	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	13q22.1	13	73154002	Intergenic	RNU6-66P - RNU7-89P	100873770	100873844		       40.98	       14.09	rs9600079-T	rs9600079	0	9600079	Intergenic	1	0.38	3E-9	8.522878745280337		   1.18	[1.12-1.24] 	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	8q24.21	8	127527115	Intergenic	CASC8 - CASC11	727677	100270680		       44.98	      203.22	rs7837688-?	rs7837688	0	7837688	Intergenic	1	NR	1E-25	25		NR	NR	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	8q24.21	8	127091692	Intergenic	PRNCR1			101867536			rs1456315-?	rs1456315	0	1456315	ncRNA	0	NR	2E-29	28.69897000433602		NR	NR	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	3p12.1	3	87103019	Intergenic	LINC00506			100846978			rs9284813-?	rs9284813	0	9284813	intron	0	NR	5E-9	8.301029995663981		NR	NR	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	8p21.2	8	23668950	NKX3.1	FAM60DP - NKX3-1	646721	4824		       33.44	        9.74	rs1512268-?	rs1512268	0	1512268	Intergenic	1	NR	4E-11	10.39794000867204		NR	NR	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	10q11.23	10	46046326	MSMB	MSMB			4477			rs10993994-?	rs10993994	0	10993994	nearGene-5	0	NR	3E-8	7.522878745280337		NR	NR	Illumina [510,687]	N
09/11/2010	20676098	Takata R	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676098	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	17q12	17	37741165	HNF1B	HNF1B			6928			rs7501939-?	rs7501939	0	7501939	intron	0	NR	1E-12	12		NR	NR	Illumina [510,687]	N
09/11/2010	20676096	Zhang H	08/01/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20676096	Genome-wide association study identifies 1p36.22 as a new susceptibility locus for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	348 Chinese ancestry cases, 359 Chinese ancestry controls	2,121 Chinese ancestry cases, 1,748 Chinese ancestry controls	1p36.22	1	10325413	KIF1B,UBE4B,PGD	KIF1B			23095			rs17401966-A	rs17401966	0	17401966	intron	0	0.72	2E-18	17.69897000433602		   1.64	[1.49-1.82] 	Affymetrix [294,566]	N
09/14/2010	20675712	Reed DR	07/31/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20675712	The perception of quinine taste intensity is associated with common genetic variants in a bitter receptor cluster on chromosome 12.	Bitter taste response	1,457 European ancestry individuals	73 European ancestry individuals	7q34	7	141973545	TAS2R38	TAS2R38;MGAM			5726;8972			rs713598-?	rs713598	0	713598	missense;intron	0	0.40	2E-104	103.698970004336	(PROP)	NR	NR	Illumina [~2.3 million] (imputed)	N
09/11/2010	20686651	Gudbjartsson DF	07/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20686651	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	16p12.3	16	20353266	UMOD	UMOD			7369			rs4293393-T	rs4293393	0	4293393	nearGene-5	0	0.798	4E-10	9.397940008672037	(CKD)	   1.25	[1.17-1.35] 	Illumina [~2.5 million] (imputed)	N
09/11/2010	20686651	Gudbjartsson DF	07/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20686651	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	3p24.3	3	23052083	NR	SALL4P5 - RPL24P7	100130785	100270963		       60.50	       82.24	rs9310709-C	rs9310709	0	9310709	Intergenic	1	0.41	2E-6	5.698970004336018	(CKD)	   1.15	[1.09-1.22] 	Illumina [~2.5 million] (imputed)	N
09/11/2010	20686651	Gudbjartsson DF	07/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20686651	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	3q12.1	3	99547493	NR	ACTG1P13 - COL8A1	100418920	1295		      331.46	       91.10	rs13070584-T	rs13070584	0	13070584	Intergenic	1	0.05	2E-6	5.698970004336018	(CKD)	   1.42	[1.23-1.65] 	Illumina [~2.5 million] (imputed)	N
09/11/2010	20686651	Gudbjartsson DF	07/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20686651	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	5p12	5	45197677	NR	MRPS30 - HCN1	10884	348980		      382.16	       57.27	rs10941694-A	rs10941694	0	10941694	Intergenic	1	0.06	9E-6	5.045757490560675	(CKD)	   1.35	[1.19-1.56] 	Illumina [~2.5 million] (imputed)	N
09/10/2010	20668459	Kim HN	07/29/2010	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20668459	Genetic variants that affect length/height in infancy/early childhood in Vietnamese-Korean families.	Height	518 individuals from 165 Vietnamese-Korean families	NA	16q23.2	16	79551124	MAF	RNA5SP431 - MAF	100873681	4094		      286.55	       42.72	rs7498403-C	rs7498403	0	7498403	Intergenic	1	0.11	5E-6	5.301029995663981		NR	NR	Illumina [269,888]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q37.2	2	234706553	ARL4C	ARL4C - HSPA8P10	10123	100420004		      209.50	       38.16	rs6736997-A	rs6736997	0	6736997	Intergenic	1	0.33	6E-6	5.221848749616356	(recessive)	   1.57	[1.29-1.91] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	7q36.2	7	153928758	DPP6	DPP6			1804			rs6464375-A	rs6464375	0	6464375	intron	0	0.10	4E-7	6.397940008672037	(recessive)	   3.73	[2.24-6.21] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	8q24.13	8	123753462	FAM91A1	ANXA13 - FAM91A1	312	157769		       16.06	       14.98	rs10088262-A	rs10088262	0	10088262	Intergenic	1	0.34	4E-6	5.397940008672037	(dominant)	   1.40	[1.21-1.61] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	6p25.3	6	1339954	FOXQ1	FOXQ1 - FOXF2	94234	2295		       25.20	       49.88	rs9502893-G	rs9502893	0	9502893	Intergenic	1	0.35	3E-7	6.522878745280337	(allelic)	   1.29	[1.17-1.43] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q12.1	2	104762499	LOC284998	LINC01114 - HMGB3P11	284998	644442		        4.78	        8.78	rs12615966-A	rs12615966	0	12615966	Intergenic	1	0.10	7E-6	5.154901959985742	(recessive)	   3.15	[1.91-5.21] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	13q21.32	13	65907683	LOC387933	HNRNPA3P5 - MIR548X2	387933	100616302		      118.92	       58.65	rs1585440-C	rs1585440	0	1585440	Intergenic	1	0.71	9E-6	5.045757490560675	(allelic)	   1.30	[1.16-1.45] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	13q22.1	13	73357977	LOC730242	RNY1P8 - MARK2P12	100873807	100421565		      130.72	       49.81	rs1886449-A	rs1886449	0	1886449	Intergenic	1	0.38	9E-6	5.045757490560675	(recessive)	   1.51	[1.26-1.80] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	5p15.33	5	2109787	LOC731559	CTD-2194D22.4 - IRX2	101929081	153572		      209.29	      636.38	rs6879627-G	rs6879627	0	6879627	Intergenic	1	0.52	8E-6	5.096910013008055	(allelic)	   1.25	[1.14-1.39] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	17q11.2	17	32550640	MYO1D	MYO1D			4642			rs225190-G	rs225190	0	225190	intron	0	0.36	6E-6	5.221848749616356	(allelic)	   1.26	[1.14-1.39] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	13q31.1	13	79725587	NDFIP2	NDFIP2 - LINC00382	54602	101927195		      169.51	      147.00	rs2039553-A	rs2039553	0	2039553	Intergenic	1	0.27	7E-6	5.154901959985742	(recessive)	   1.73	[1.36-2.19] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	6q26	6	161815043	PARK2	PARK2			5071			rs3016539-A	rs3016539	0	3016539	intron	0	0.87	7E-6	5.154901959985742	(dominant)	   1.50	[1.26-1.79] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	17p11.2	17	18850557	PRPSAP2	LOC101929141			101929141			rs4924935-G	rs4924935	0	4924935	intron	0	0.23	8E-6	5.096910013008055	(dominant)	   1.37	[1.19-1.58] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q11.2	2	101305708	RNF149	RNF149			284996			rs6711606-A	rs6711606	0	6711606	intron	0	0.12	4E-6	5.397940008672037	(recessive)	   2.81	[1.81-4.37] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	17q22	17	58370936	RNF43	RNF43			54894			rs2257205-A	rs2257205	0	2257205	missense	0	0.33	8E-6	5.096910013008055	(dominant)	   1.38	[1.20-1.59] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	8p11.22	8	38611785	RNF5P1	RNF5P1 - TACC1	286140	6867		       10.53	      116.40	rs7832232-A	rs7832232	0	7832232	Intergenic	1	0.45	5E-6	5.301029995663981	(recessive)	   1.45	[1.24-1.71] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q22.1	2	136797654	THSD7B	UBBP1 - THSD7B	7315	80731		      467.65	       84.49	rs1427593-A	rs1427593	0	1427593	Intergenic	1	0.08	7E-6	5.154901959985742	(dominant)	   1.49	[1.25-1.77] 	Illumina [420,236]	N
09/10/2010	20686608	Low SK	07/29/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20686608	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	12p11.21	12	32283475	BICD1	BICD1			636			rs708224-A	rs708224	0	708224	intron	0	0.66	3E-7	6.522878745280337	(allelic)	   1.32	[1.19-1.47] 	Illumina [420,236]	N
09/10/2010	20673876	Rietschel M	07/29/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20673876	Genome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression.	Major depressive disorder	597 European ancestry cases, 1,295 European ancestry controls	409 European ancestry cases, 541 European ancestry controls	5q14.1	5	79533426	HOMER1	RPL7AP32 - PAPD4	133748	167153		        3.28	       78.99	rs7713917-G	rs7713917	0	7713917	Intergenic	1	0.60	1E-6	5.999999999999999		   1.33	[1.19-1.49] 	Illumina [491,238]	N
09/10/2010	20673876	Rietschel M	07/29/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20673876	Genome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression.	Major depressive disorder	597 European ancestry cases, 1,295 European ancestry controls	409 European ancestry cases, 541 European ancestry controls	12q15	12	68976976	CPM	CPM - CPSF6	1368	11052		       13.74	      262.56	rs9943849-T	rs9943849	0	9943849	Intergenic	1	0.73	3E-6	5.522878745280337		   1.37	[1.20-1.56] 	Illumina [491,238]	N
09/10/2010	20673876	Rietschel M	07/29/2010	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20673876	Genome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression.	Major depressive disorder	597 European ancestry cases, 1,295 European ancestry controls	409 European ancestry cases, 541 European ancestry controls	15q14	15	36021764	Intergenic	MIR4510 - COX6CP4	100616293	100288892		       94.84	      550.17	rs10520045-T	rs10520045	0	10520045	Intergenic	1	0.27	7E-6	5.154901959985742		   1.32	[1.17-1.50] 	Illumina [491,238]	N
09/10/2010	20668430	Genovese G	07/28/2010	Kidney Int	http://www.ncbi.nlm.nih.gov/pubmed/20668430	A risk allele for focal segmental glomerulosclerosis in African Americans is located within a region containing APOL1 and MYH9.	Glomerulosclerosis	56 African American cases, 61 European ancestry cases, 1,759 African American controls, 1,531 European ancestry controls	299 European ancestry cases	22q12.3	22	36265284	APOL1, MYH9	APOL1			8542			rs2239785-G	rs2239785	0	2239785	missense	0	0.64	5E-13	12.30102999566398	(AA)	NR	NR	Illumina [up to ~542,539]	N
09/10/2010	20663923	Anney R	07/27/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20663923	A genome-wide scan for common alleles affecting risk for autism.	Autism	1,385 affected children from 1,369 families	1,086 affected children from 595 families, 1,965 European, African American and other controls	20p12.1	20	14766825	MACROD2	MACROD2			140733			rs4141463-?	rs4141463	0	4141463	intron	0	0.57	4E-8	7.397940008672037	(Str)	   1.37	[1.22-1.52] 	Illumina [842,348]	N
09/10/2010	20663923	Anney R	07/27/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20663923	A genome-wide scan for common alleles affecting risk for autism.	Autism	1,385 affected children from 1,369 families	1,086 affected children from 595 families, 1,965 European, African American and other controls	14q32.31	14	101894408	PPP2R5C	PPP2R5C			5527			rs7142002-?	rs7142002	0	7142002	intron	0	0.94	3E-6	5.522878745280337	(Spc)	   1.56	[1.28-1.89] 	Illumina [842,348]	N
09/07/2010	20662065	Clancy RM	07/26/2010	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/20662065	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	21q22.2	21	38684499	NCRNA00114, ERG	SNRPGP13 - LINC00114	100874428	400866		      181.88	       54.46	rs743446-?	rs743446	0	743446	Intergenic	1	0.49	5E-6	5.301029995663981		   2.40	[1.64-3.49] 	Illumina [346,110]	N
09/07/2010	20662065	Clancy RM	07/26/2010	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/20662065	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	12q21.31	12	83614496	TMTC2	RPL6P25 - SLC6A15	401725	55117		      462.26	     1244.99	rs2403106-?	rs2403106	0	2403106	Intergenic	1	0.07	3E-6	5.522878745280337		   2.48	[1.70-3.61] 	Illumina [346,110]	N
09/07/2010	20662065	Clancy RM	07/26/2010	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/20662065	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	1q31.3	1	195562293	Intergenic	EEF1A1P14 - KCNT2	647167	343450		     1371.75	      663.49	rs1890645-?	rs1890645	0	1890645	Intergenic	1	0.30	4E-6	5.397940008672037		   2.98	[1.88-4.73] 	Illumina [346,110]	N
09/07/2010	20662065	Clancy RM	07/26/2010	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/20662065	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	10p15.1	10	4677604	AKR1E2, LOC338588	LINC00704			100216001			rs1391511-?	rs1391511	0	1391511	intron	0	0.36	7E-6	5.154901959985742		   1.84	[1.41-2.40] 	Illumina [346,110]	N
09/07/2010	20662065	Clancy RM	07/26/2010	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/20662065	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	6p21.33	6	31481199	TNF,NFKBIL1,LTA,LTB,AIF1	TRNAI25			100189401			rs3099844-?	rs3099844	0	3099844		0	0.11	5E-10	9.301029995663981		   3.34	[2.29-4.89] 	Illumina [346,110]	N
09/17/2010	20659327	Kariuki SN	07/26/2010	Arthritis Res Ther	http://www.ncbi.nlm.nih.gov/pubmed/20659327	Trait-stratified genome-wide association study identifies novel and diverse genetic associations with serologic and cytokine phenotypes in systemic lupus erythematosus.	Serologic markers in systemic lupus erythematosus	44 high IFN-alpha cases of European, African American, Hispanic American, and Asian American ancestry, 60 low IFN-alpha cases of European, African American, Hispanic American, and Asian American ancestry	280 African American cases, 173 European ancestry cases, 85 Hispanic American cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [NR](pooled)	N
09/10/2010	20657596	Johansen CT	07/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20657596	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	11q23.3	11	116778201	APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.14	5E-24	23.30102999566398		   3.28	[2.61-4.14] 	Affymetrix [~2.1 million] (imputed)	N
09/10/2010	20657596	Johansen CT	07/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20657596	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.41	7E-9	8.154901959985743		   1.75	[1.45-2.12] 	Affymetrix [~2.1 million] (imputed)	N
09/10/2010	20657596	Johansen CT	07/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20657596	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	8p21.3	8	20019235	LPL	LPL - RPL30P9	4023	100270981		       51.98	       94.10	rs7016880-?	rs7016880	0	7016880	Intergenic	1	0.90	2E-7	6.698970004336019		   3.13	[2.04-4.76] 	Affymetrix [~2.1 million] (imputed)	N
09/10/2010	20657596	Johansen CT	07/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20657596	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	2p24.1	2	21166787	APOB	TDRD15 - RNA5SP87	100129278	100873320		       28.81	     1172.10	rs4635554-G	rs4635554	0	4635554	Intergenic	1	0.31	2E-7	6.698970004336019		   1.67	[1.38-2.02] 	Affymetrix [~2.1 million] (imputed)	N
09/10/2010	20657596	Johansen CT	07/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20657596	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	7q11.23	7	73450539	MLXIPL	BAZ1B			9031			rs714052-?	rs714052	0	714052	intron	0	0.87	3E-6	5.522878745280337		   2.27	[1.61-3.23] 	Affymetrix [~2.1 million] (imputed)	N
09/07/2010	20661308	Kapur K	07/22/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20661308	Genome-wide meta-analysis for serum calcium identifies significantly associated SNPs near the calcium-sensing receptor (CASR) gene.	Calcium levels	8,918 European ancestry individuals, 3,947 Indian Asians ancestry individuals	4,126 European ancestry individuals	3q21.1	3	122284910	CASR	CASR			846			rs1801725-T	rs1801725	0	1801725	missense	0	0.1775	6E-37	36.22184874961636		    .00	[0.0031-0.0042] increase in log(CASR, mmol/L)	Affymetrix, Illumina and Perlegen [2,557,252] (imputed)	N
09/07/2010	20639881	Conde L	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639881	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.32	6	32697643	HLA-DQB1	TRNAI25			100189401			rs10484561-G	rs10484561	0	10484561		0	0.11	1E-29	28.99999999999999	(FL)	   1.95	[1.72-2.22] 	Illumina [312,768]	N
09/07/2010	20639881	Conde L	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639881	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	11q24.1	11	123490689	Intergenic	GRAMD1B			57476			rs735665-T	rs735665	0	735665	intron	0	0.21	4E-9	8.397940008672036	(CLL/SLL)	   1.81	[1.50-2.20] 	Illumina [312,768]	N
09/07/2010	20639881	Conde L	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639881	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	6p21.33	6	31106253	C6orf15	TRNAI25			100189401			rs6457327-C	rs6457327	0	6457327		0	0.56	7E-6	5.154901959985742	(FL)	   1.47	[1.27-1.72] 	Illumina [312,768]	N
09/02/2010	20639880	Liu X	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639880	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cirrhosis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	7q32.1	7	128954129	IRF5,TNPO3	TNPO3			23534			rs10488631-C	rs10488631	0	10488631	nearGene-3	0	0.11	3E-10	9.522878745280336		   1.63	[NR] 	Illumina [276,459]	N
09/02/2010	20639880	Liu X	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639880	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cirrhosis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	17q12	17	39820216	IKZF3,ZPBP2,GSDMB,ORMDL3	IKZF3			22806			rs9303277-T	rs9303277	0	9303277	intron	0	0.51	2E-9	8.698970004336019		   1.38	[NR] 	Illumina [276,459]	N
09/02/2010	20639880	Liu X	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639880	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cirrhosis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	19q13.33	19	50423485	SPIB	SPIB			6689			rs3745516-A	rs3745516	0	3745516	intron	0	0.23	8E-11	10.09691001300805		   1.46	[NR] 	Illumina [276,459]	N
09/02/2010	20639880	Liu X	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639880	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cirrhosis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	1p31.3	1	67356694	IL12RB2	IL12RB2			3595			rs3790567-A	rs3790567	0	3790567	intron	0	0.232	8E-12	11.09691001300806		   1.48	[NR] 	Illumina [276,459]	N
09/02/2010	20639880	Liu X	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639880	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cirrhosis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	3q25.33	3	160011091	IL12A	IL12A-AS1			101928376			rs6441286-G	rs6441286	0	6441286	intron	0	0.394	8E-12	11.09691001300806		   1.44	[NR] 	Illumina [276,459]	N
09/02/2010	20639880	Liu X	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639880	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cirrhosis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	6p21.32	6	32689801	HLA-DQB1	TRNAI25			100189401			rs7774434-C	rs7774434	0	7774434		0	0.371	3E-26	25.52287874528034		   1.75	[NR] 	Illumina [276,459]	N
09/02/2010	20639878	Singer JB	07/18/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639878	A genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.	Lumiracoxib-related liver injury	31 European ancestry cases, 3 Hispanic ancestry cases, 1 other ancestry case, 176 controls	79 European ancestry cases, 16 Hispanic ancestry cases, 1 other ancestry case, 405 controls	6p21.32	6	32338202	HLA-DRB1	C6orf10			10665			rs3129900-?	rs3129900	0	3129900	intron	0	0.105	7E-25	24.15490195998574		   7.50	[5.0-11.3] 	Affymetrix [682,386]	N
09/02/2010	20602913	Duffy DL	07/17/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20602913	IRF4 variants have age-specific effects on nevus count and predispose to melanoma.	Nevus count	1,810 European ancestry twins	1,470 European ancestry parents of twins, 2,247 European ancestry twins, 485 European ancestry individuals, 925 European ancestry melanoma cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [529,721]	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	6q22.31	6	121824888	GJA1	RPL23AP48 - HMGB3P18	728567	644502		      144.43	       33.29	rs9398652-A	rs9398652	0	9398652	Intergenic	1	0.10	4E-15	14.39794000867204		  12.60	[9.54-15.66] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	14q11.2	14	23396676	MYH6	MYH6			4624			rs452036-A	rs452036	0	452036	intron	0	0.36	4E-14	13.39794000867204		   7.80	[5.84-9.76] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	14q11.2	14	23507801	MYH7,NDNG	NGDN - THTPA	25983	79178		       29.61	        3.96	rs223116-A	rs223116	0	223116	Intergenic	1	0.24	3E-8	7.522878745280337		   7.40	[4.85-9.95] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	12p12.1	12	24617944	Intergenic	KNOP1P1 - RPL21P102	100129937	100271432		       32.83	       24.71	rs17287293-G	rs17287293	0	17287293	Intergenic	1	0.15	2E-10	9.698970004336017		   8.60	[6.03-11.17] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	6q22.31	6	118252898	SLC35F1	SLC35F1			222553			rs281868-G	rs281868	0	281868	intron	0	0.50	4E-10	9.397940008672037		   6.30	[4.36-8.24] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	7q22.1	7	100855586	SLC12A9	SLC12A9			56996			rs314370-C	rs314370	0	314370	intron	0	0.19	6E-10	9.221848749616356		   7.60	[5.23-9.97] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	7q22.1	7	100889133	UFSP1	SRRT;UFSP1			51593;402682			rs12666989-C	rs12666989	0	12666989	intron;missense	0	0.18	2E-8	7.698970004336018		   7.00	[4.63-9.37] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	11q12.2	11	61803311	FADS1	FADS1			3992			rs174547-C	rs174547	0	174547	intron	0	0.33	2E-9	8.698970004336019		   6.20	[4.22-8.18] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	1q32.2	1	207955377	CD34	CD34 - PLXNA2	947	5362		       44.04	       66.87	rs2745967-G	rs2745967	0	2745967	Intergenic	1	0.37	7E-8	7.154901959985742		   5.40	[3.48-7.32] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
09/02/2010	20639392	Eijgelsheim M	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639392	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	6q22.31	6	121427396	GJA1	HMGN2P29 - GJA1	100874472	2697		       18.58	        8.20	rs11154022-A	rs11154022	0	11154022	Intergenic	1	0.33	7E-8	7.154901959985742		   5.80	[3.74-7.86] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q37.1[rs6742078]; 2q37.1[rs11891311]			UGT1A1	 - 						rs6742078-?	rs6742078, rs11891311					0.122	1E-158			    .18	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	12p12.2	12	20864941	SLCO1B3, LST3	SLCO1B3			28234			rs2417940-?	rs2417940	0	2417940	intron	0	0.207	2E-17	16.69897000433602		    .05	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	1q23.2	1	159886639	CCDC19	CCDC19			25790			rs2501324-?	rs2501324	0	2501324	missense	0	0.01	2E-10	9.698970004336017		    .14	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	14q21.2	14	45560484	Intergenic	DNAJC19P9 - LINC00871	644589	100506412		      270.10	      503.68	rs7140958-?	rs7140958	0	7140958	Intergenic	1	0.02	2E-7	6.698970004336019		    .09	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	6p21.32	6	33093045	Intergenic	TRNAI25			100189401			rs6928954-?	rs6928954	0	6928954		0	0.023	1E-6	5.999999999999999		    .08	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	4q31.3	4	154468095	DCHS2	DCHS2			54798			rs17031671-?	rs17031671	0	17031671	intron	0	0.017	6E-11	10.22184874961635		    .12	[NR] bilirubin level decrease	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q32.2	2	189778923	ORMDL1	ORMDL1			94101			rs7606224-?	rs7606224	0	7606224	intron	0	0.011	2E-6	5.698970004336018		    .10	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q37.1	2	233356202	DGKD	DGKD			8527			rs1550532-?	rs1550532	0	1550532	intron	0	0.317	3E-19	18.52287874528033		    .04	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	21q22.11	21	32796263	C21orf49	C21orf49;C21orf62			54067;56245			rs2154427-?	rs2154427	0	2154427	intron;intron	0	0.013	1E-6	5.999999999999999		    .10	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	8q24.23	8	136756649	Intergenic	MAPRE1P1 - FLJ45872	80327	401478		     1130.62	     1052.78	rs16906293-?	rs16906293	0	16906293	Intergenic	1	0.014	6E-6	5.221848749616356		    .09	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q24.2	2	160010548	PLA2R1	PLA2R1			22925			rs2667011-?	rs2667011	0	2667011	intron	0	0.248	2E-13	12.69897000433602		    .04	[NR] bilirubin level decrease	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q37.1	2	233760498	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs4148323-?	rs4148323	0	4148323	intron;intron;intron;intron;intron;intron;intron;missense;intron	0	0.189	3E-139	138.5228787452803	Conditional on rs11891311	    .14	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	9p22.3	9	16034540	Intergenic	RNU6-14P - C9orf92	100873746	100129385		      258.25	      169.40	rs3008706-?	rs3008706	0	3008706	Intergenic	1	0.035	5E-7	6.30102999566398		    .06	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
11/16/2013	20639394	Kang TW	07/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20639394	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	9q34.12	9	130890269	Intergenic	RPL37P17 - QRFP	100271202	347148		      165.22	        3.16	rs10901296-?	rs10901296	0	10901296	Intergenic	1	0.016	3E-7	6.522878745280337		    .09	[NR] bilirubin level increase	Affymetrix [1,227,049] (imputed)	N
09/01/2010	20637204	Ochi H	07/13/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20637204	ITPA polymorphism affects ribavirin-induced anemia and outcomes of therapy--a genome-wide study of Japanese HCV virus patients.	Ribavirin-induced anemia	453 Japanese ancestry individuals	470 Japanese ancestry individuals	20p13	20	3213196	DDRGK1,ITPA	ITPA			3704			rs1127354-A	rs1127354	0	1127354	missense	0	NR	4E-44	43.39794000867204		NR	NR	Illumina [510,537]	N
09/01/2010	20622880	Bezzina CR	07/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20622880	Genome-wide association study identifies a susceptibility locus at 21q21 for ventricular fibrillation in acute myocardial infarction.	Ventricular fibrillation	Up to 515 European ancestry cases, 457 European ancestry controls	146 European ancestry cases, 391 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [507,436]	N
09/01/2010	20622881	Gretarsdottir S	07/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20622881	Genome-wide association study identifies a sequence variant within the DAB2IP gene conferring susceptibility to abdominal aortic aneurysm.	Abdominal aortic aneurysm	1,292 European ancestry cases, 30,503 European ancestry controls	3,267 European ancestry cases, 7,451 European ancestry controls	9q33.2	9	121660124	DAB2IP	DAB2IP			153090			rs7025486-A	rs7025486	0	7025486	intron	0	0.23	5E-10	9.301029995663981		   1.21	[1.14-1.28] 	Illumina [293,677]	N
09/01/2010	20622881	Gretarsdottir S	07/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20622881	Genome-wide association study identifies a sequence variant within the DAB2IP gene conferring susceptibility to abdominal aortic aneurysm.	Abdominal aortic aneurysm	1,292 European ancestry cases, 30,503 European ancestry controls	3,267 European ancestry cases, 7,451 European ancestry controls	9p21.3	9	22115960	CDKN2A,CKDN2B	CDKN2B-AS1			100048912			rs2383207-G	rs2383207	0	2383207	intron	0	0.49	2E-8	7.698970004336018		   1.27	[NR] 	Illumina [293,677]	N
08/30/2010	20622879	Mizuki N	07/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20622879	Genome-wide association studies identify IL23R-IL12RB2 and IL10 as Beh&#x000e7;et's disease susceptibility loci.	Behcet's disease	611 Japanese ancestry cases, 737 Japanese ancestry controls	119 Korean ancestry cases, 140 Korean ancestry controls, 1,215 Turkish cases, 1,279 Turkish controls	1p31.3	1	67287825	IL23R,IL12RB2	IL23R - IL12RB2	149233	3595		       27.85	       19.54	rs1495965-G	rs1495965	0	1495965	Intergenic	1	0.51	2E-11	10.69897000433602		   1.35	[1.24-1.47] 	Affymetrix [320,438]	N
08/30/2010	20622879	Mizuki N	07/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20622879	Genome-wide association studies identify IL23R-IL12RB2 and IL10 as Beh&#x000e7;et's disease susceptibility loci.	Behcet's disease	611 Japanese ancestry cases, 737 Japanese ancestry controls	119 Korean ancestry cases, 140 Korean ancestry controls, 1,215 Turkish cases, 1,279 Turkish controls	1q32.1	1	206773289	IL10	IL10			3586			rs1800871-T	rs1800871	0	1800871	nearGene-5	0	0.31	1E-14	14		   1.45	[1.32-1.60] 	Affymetrix [320,438]	N
08/18/2010	20622878	Remmers EF	07/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20622878	Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Beh&#x000e7;et's disease.	Behcet's disease	1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	Up to 111 Turkish ancestry cases, 225 Turkish ancestry controls, 189 Middle Eastern Arab ancestry cases, 163 Middle Eastern Arab ancestry controls, 227 European ancestry cases, 203 European ancestry controls, 688 East Asian ancestry cases, 791 East Asian ancestry controls	1q32.1	1	206771300	IL10	IL10			3586			rs1518111-?	rs1518111	0	1518111	intron	0	NR	4E-18	17.39794000867204		   1.45	[1.34-1.58] 	Illumina [311,459]	N
08/18/2010	20622878	Remmers EF	07/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20622878	Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Beh&#x000e7;et's disease.	Behcet's disease	1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	Up to 111 Turkish ancestry cases, 225 Turkish ancestry controls, 189 Middle Eastern Arab ancestry cases, 163 Middle Eastern Arab ancestry controls, 227 European ancestry cases, 203 European ancestry controls, 688 East Asian ancestry cases, 791 East Asian ancestry controls	1p31.3	1	67294457	IL23R,IL12RB2	IL23R - IL12RB2	149233	3595		       34.48	       12.91	rs924080-?	rs924080	0	924080	Intergenic	1	NR	7E-9	8.154901959985743		   1.28	[1.18-1.39] 	Illumina [311,459]	N
09/07/2010	20634892	Calboli FC	07/09/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20634892	A genome-wide association study of neuroticism in a population-based sample.	Neuroticism	2,235 European ancestry individuals	NA	6q22.31	6	124370091	NKAIN2	NKAIN2			154215			rs9491140-?	rs9491140	0	9491140	intron	0	0.33	3E-7	6.522878745280337	(main effect)	    .91	[0.56-1.26] unit decrease	Affymetrix [1,705,237] (imputed)	N
09/07/2010	20634892	Calboli FC	07/09/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20634892	A genome-wide association study of neuroticism in a population-based sample.	Neuroticism	2,235 European ancestry individuals	NA	15q26.3	15	97975562	ARRDC4	ARRDC4 - FAM169B	91947	283777		        1.72	      461.60	rs4965121-?	rs4965121	0	4965121	Intergenic	1	0.38	1E-6	5.999999999999999	(main effect)	    .84	[0.51-1.17] unit decrease	Affymetrix [1,705,237] (imputed)	N
09/07/2010	20634892	Calboli FC	07/09/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20634892	A genome-wide association study of neuroticism in a population-based sample.	Neuroticism	2,235 European ancestry individuals	NA	13q31.3	13	93358916	GPC6	GPC6			10082			rs9561329-?	rs9561329	0	9561329	intron	0	0.09	1E-7	7	(age interaction)	    .17	[0.11-0.23] unit decrease	Affymetrix [1,705,237] (imputed)	N
08/17/2010	20613766	Akiyama K	07/08/2010	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20613766	Genome-wide association study to identify genetic variants present in Japanese patients harboring intracranial aneurysms.	Intracranial aneurysm	288 Japanese ancestry cases, 194 Japanese ancestry controls	739 Japanese ancestry cases, 659 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [250,507]	N
08/11/2010	20610541	Lascorz J	07/07/2010	Carcinogenesis	http://www.ncbi.nlm.nih.gov/pubmed/20610541	Genome-wide association study for colorectal cancer identifies risk polymorphisms in German familial cases and implicates MAPK signalling pathways in disease susceptibility.	Colorectal cancer	371 European ancestry cases, 1,263 European ancestry controls	4,915 European ancestry cases, 8,159 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [610,664]	N
08/11/2010	20601957	Uno S	07/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20601957	A genome-wide association study identifies genetic variants in the CDKN2BAS locus associated with endometriosis in Japanese.	Endometriosis	1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	484 Japanese ancestry cases, 3,974 Japanese ancestry controls	9p21.3	9	22115106	CDKN2BAS	CDKN2B-AS1			100048912			rs10965235-C	rs10965235	0	10965235	intron	0	0.802	6E-12	11.22184874961635		   1.44	[1.30-1.59] 	Illumina [460,945]	N
08/11/2010	20601957	Uno S	07/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20601957	A genome-wide association study identifies genetic variants in the CDKN2BAS locus associated with endometriosis in Japanese.	Endometriosis	1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	484 Japanese ancestry cases, 3,974 Japanese ancestry controls	1p36.12	1	22159378	WNT4	WNT4 - MIR4418	54361	100616433		       16.35	      106.86	rs16826658-G	rs16826658	0	16826658	Intergenic	1	0.523	2E-6	5.698970004336018		   1.20	[1.11-1.29] 	Illumina [460,945]	N
08/17/2010	20610895	Koriyama H	07/02/2010	J Atheroscler Thromb	http://www.ncbi.nlm.nih.gov/pubmed/20610895	Identification of evidence suggestive of an association with peripheral arterial disease at the OSBPL10 locus by genome-wide investigation in the Japanese population.	Peripheral artery disease	195 Japanese ancestry cases, 1,358 Japanese ancestry controls	699 Japanese ancestry cases, 1,540 Japanese ancestry controls	3p23	3	31754078	OSBPL10	OSBPL10			114884			rs1902341-G	rs1902341	0	1902341	intron	0	0.397	5E-7	6.30102999566398		   1.31	[1.18-1.46] 	Perlegen [222,285]	N
08/17/2010	20610895	Koriyama H	07/02/2010	J Atheroscler Thromb	http://www.ncbi.nlm.nih.gov/pubmed/20610895	Identification of evidence suggestive of an association with peripheral arterial disease at the OSBPL10 locus by genome-wide investigation in the Japanese population.	Peripheral artery disease	195 Japanese ancestry cases, 1,358 Japanese ancestry controls	699 Japanese ancestry cases, 1,540 Japanese ancestry controls	10p12.31	10	20610679	Intergenic	MIR4675 - NEBL	100616383	10529		       58.63	      169.29	rs2359536-C	rs2359536	0	2359536	Intergenic	1	0.032	2E-6	5.698970004336018		   1.84	[1.43-2.37] 	Perlegen [222,285]	N
08/12/2010	20595679	Feehally J	07/01/2010	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/20595679	HLA has strongest association with IgA nephropathy in genome-wide analysis.	Nephropathy	187 European ancestry child cases, 244 European ancestry cases, 4,980 European ancestry controls	NA	6p21.32	6	32251066	Intergenic	C6orf10			10665			rs3115573-?	rs3115573	0	3115573	intron	0	NR	1E-9	8.999999999999998		   1.62	[1.39-1.90] 	Illumina [286[,200]	N
08/17/2010	20664687	Lin HJ	07/01/2010	Mol Vis	http://www.ncbi.nlm.nih.gov/pubmed/20664687	Single-nucleotide polymorphisms in chromosome 3p14.1- 3p14.2 are associated with susceptibility of type 2 diabetes with cataract.	Cataracts in type 2 diabetes	109 Han Chinese ancestry cases, 649 Han Chinese ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [517,401]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	2q33.2	2	203857029	CTLA4,ICOS	NPM1P33 - CTLA4	100131478	1493		       83.53	       10.76	rs1024161-A	rs1024161	0	1024161	Intergenic	1	0.40	4E-13	12.39794000867204		   1.44	[1.30-1.59] 	Illumina [463,301]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	4q27	4	122602720	IL2,IL21	IL2 - IL21	3558	59067		      146.23	        9.91	rs7682241-A	rs7682241	0	7682241	Intergenic	1	0.33	4E-8	7.397940008672037		   1.34	[1.21-1.48] 	Illumina [463,301]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6q25.1	6	150036876	ULBP3,ULBP6	RAET1M - PHBP1	353094	5246		        3.31	        5.61	rs9479482-A	rs9479482	0	9479482	Intergenic	1	0.57	4E-19	18.39794000867203		   1.65	[1.48-1.83] 	Illumina [463,301]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	9q31.1	9	99961410	STX17	STX17			55014			rs10760706-G	rs10760706	0	10760706	intron	0	0.31	4E-7	6.397940008672037		   1.32	[1.19-1.47] 	Illumina [463,301]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	10p15.1	10	6059750	IL2RA	IL2RA			3559			rs3118470-G	rs3118470	0	3118470	intron	0	0.30	2E-12	11.69897000433602		   1.41	[1.27-1.56] 	Illumina [463,301]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	11q13.1	11	64329761	PRDX5	LOC102723878			102723878			rs694739-A	rs694739	0	694739	intron	0	0.63	4E-7	6.397940008672037		   1.33	1.19-1.48] 	Illumina [463,301]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	12q13.2	12	56018703	IKZF4	IKZF4			64375			rs1701704-C	rs1701704	0	1701704	intron	0	0.33	3E-8	7.522878745280337		   1.34	[1.21-1.48] 	Illumina [463,301]	N
08/12/2010	20596022	Petukhova L	07/01/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20596022	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	6p21.32	6	32711222	HLA-DQA2	TRNAI25			100189401			rs9275572-G	rs9275572	0	9275572		0	0.59	1E-35	35		   2.21	[1.98-2.47] 	Illumina [463,301]	N
11/09/2013	20592726	Chen SH	06/30/2010	Clin Pharmacol Ther	http://www.ncbi.nlm.nih.gov/pubmed/20592726	Genetic variations in GRIA1 on chromosome 5q33 related to asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	211 European ancestry child cases, 40 Black child cases, 46 Hispanic child cases, 4 Asian child cases, 21 Other ancestry child cases	99 European ancestry child cases, 33 Black child cases, 24 Hispanic child cases, 2 Asian child cases, 5 Other ancestry child cases	5q33.2	5	153790814	GRIA1	GRIA1			2890			rs4958351-A	rs4958351	0	4958351	intron	0	0.27	4E-7	6.397940008672037		   1.75	[1.41-2.17] 	Affymetrix [364,033]	N
07/14/2010	20598377	Nischwitz S	06/30/2010	J Neuroimmunol	http://www.ncbi.nlm.nih.gov/pubmed/20598377	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	6p21.32	6	32619077	DQA1	TRNAI25			100189401			rs9271366-G	rs9271366	0	9271366		0	NR	4E-17	16.39794000867203		   2.62	[2.09-3.28] 	Illumina [~300,000]	N
07/14/2010	20598377	Nischwitz S	06/30/2010	J Neuroimmunol	http://www.ncbi.nlm.nih.gov/pubmed/20598377	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	9q34.2	9	133970221	VAV2	VAV2			7410			rs3780792-G	rs3780792	0	3780792	intron	0	NR	1E-6	5.999999999999999		   1.60	[1.32-1.92] 	Illumina [~300,000]	N
07/14/2010	20598377	Nischwitz S	06/30/2010	J Neuroimmunol	http://www.ncbi.nlm.nih.gov/pubmed/20598377	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	10q11.21	10	43318601	Intergenic	RASGEF1A - FXYD4	221002	53828		       51.68	       53.04	rs2503875-A	rs2503875	0	2503875	Intergenic	1	NR	2E-7	6.698970004336019		   1.66	[1.37-2.00] 	Illumina [~300,000]	N
07/14/2010	20598377	Nischwitz S	06/30/2010	J Neuroimmunol	http://www.ncbi.nlm.nih.gov/pubmed/20598377	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	19p13.2	19	12035555	ZNF433	ZNF433;LOC101928464			163059;101928464			rs3745672-?	rs3745672	0	3745672	UTR-5;ncRNA	0	NR	1E-6	5.999999999999999		   7.39	[3.32-16.47] 	Illumina [~300,000]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	4p15.32	4	15396282	C1QTNF7	C1QTNF7			114905			rs1861046-A	rs1861046	0	1861046	intron	0	0.095	6E-8	7.221848749616355		   1.65	[1.38-1.98] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	4q31.21	4	141221575	ZNF330	ZNF330			27309			rs17007017-G	rs17007017	0	17007017	intron	0	0.685	7E-6	5.154901959985742		   1.34	[1.18-1.52] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	2p24.3	2	15524632	NAG	NBAS			51594			rs7581919-C	rs7581919	0	7581919	intron	0	0.041	8E-6	5.096910013008055		   1.85	[1.41-2.43] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	10q11.22	10	48527518	ARHGAP22	ARHGAP22			58504			rs10776612-T	rs10776612	0	10776612	intron	0	0.519	2E-6	5.698970004336018		   1.33	[1.18-1.49] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	11q14.3	11	92917836	Intergenic	RPS3AP42 - MTNR1B	100271597	4544		      418.88	       51.79	rs7950811-A	rs7950811	0	7950811	Intergenic	1	0.071	9E-7	6.045757490560675		   1.65	[1.35-2.00] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	13q31.1	13	78836439	Intergenic	LINC00331 - HSPD1P8	100874126	647298		       11.58	       12.79	rs11838918-C	rs11838918	0	11838918	Intergenic	1	0.022	3E-6	5.522878745280337		   2.26	[1.61-3.18] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	2q21.2	2	132386819	Intergenic	FAM201B - GPR39	339742	2863		       32.54	       29.76	rs16831128-G	rs16831128	0	16831128	Intergenic	1	0.189	4E-7	6.397940008672037		   1.45	[1.26-1.67] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	2p11.2	2	84018044	Intergenic	RPL37P10 - ST6GALNAC2P1	100271015	100422716		      422.80	       21.87	rs13398848-G	rs13398848	0	13398848	Intergenic	1	0.074	5E-6	5.301029995663981		   1.59	[1.30-1.95] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	10q26.11	10	117658593	Intergenic	EMX2 - RAB11FIP2	2018	22841		      109.05	      346.32	rs2184898-A	rs2184898	0	2184898	Intergenic	1	0.327	3E-6	5.522878745280337		   1.33	[1.18-1.50] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	4q31.21	4	141196270	Intergenic	RNF150 - ZNF330	57484	27309		       62.80	       24.63	rs1550057-C	rs1550057	0	1550057	Intergenic	1	0.757	4E-6	5.397940008672037		   1.39	[1.21-1.61] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	8p22	8	17472318	Intergenic	ADAM24P - SLC7A2	646479	6542		         .65	       24.77	rs2720508-C	rs2720508	0	2720508	Intergenic	1	0.907	7E-6	5.154901959985742		   1.61	[1.31-1.97] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	4p15.32	4	15480736	KIAA1345	CC2D2A			57545			rs1861050-T	rs1861050	0	1861050	STOP-GAIN	0	0.063	8E-6	5.096910013008055		   1.63	[1.31-2.01] 	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	4p15.32	4	15395740	C1QTNF7	C1QTNF7			114905			rs16891867-G	rs16891867	0	16891867	intron	0	0.097	3E-9	8.522878745280337		    .15	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	6q27	6	165601943	PDE10A	PDE10A			10846			rs7762160-C	rs7762160	0	7762160	intron	0	0.365	1E-6	5.999999999999999		    .07	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	12q24.11	12	108631651	SELPLG	SELPLG			6404			rs8179116-A	rs8179116	0	8179116	intron	0	0.021	3E-6	5.522878745280337		    .23	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	20q13.12	20	43945182	TOX2	TOX2			84969			rs6031252-A	rs6031252	0	6031252	intron	0	0.142	6E-6	5.221848749616356		    .11	[NR] unit decrease	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	16p13.12	16	13944317	ERCC4	ERCC4			2072			rs3136202-A	rs3136202	0	3136202	intron	0	0.429	6E-6	5.221848749616356		    .07	[NR] unit decrease	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	1q21.3	1	153801800	LOC343052	LOC343052			343052			rs4434872-T	rs4434872	0	4434872		0	0.263	8E-6	5.096910013008055		    .08	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	11q14.3	11	92917836	Intergenic	RPS3AP42 - MTNR1B	100271597	4544		      418.88	       51.79	rs7950811-A	rs7950811	0	7950811	Intergenic	1	0.071	1E-8	8		    .16	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	13q31.1	13	78836439	Intergenic	LINC00331 - HSPD1P8	100874126	647298		       11.58	       12.79	rs11838918-C	rs11838918	0	11838918	Intergenic	1	0.022	1E-8	8		    .28	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	5q34	5	166530081	Intergenic	RPLP0P9 - CTB-7E3.1	441114	102557615		      147.40	      375.14	rs2122554-A	rs2122554	0	2122554	Intergenic	1	0.162	3E-6	5.522878745280337		    .10	[NR] unit decrease	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	14q23.3	14	65281041	Intergenic	PTBP1P			122888			rs1256531-G	rs1256531	0	1256531		0	0.234	4E-6	5.397940008672037		    .09	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	2q21.2	2	132386819	Intergenic	FAM201B - GPR39	339742	2863		       32.54	       29.76	rs16831128-G	rs16831128	0	16831128	Intergenic	1	0.189	5E-6	5.301029995663981		    .08	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	2p22.3	2	35301852	Intergenic	SLC25A5P2 - MIR548AD	344371	100616475		     1461.11	      169.55	rs6750486-T	rs6750486	0	6750486	Intergenic	1	0.126	6E-6	5.221848749616356		    .10	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	12p13.32	12	5031318	Intergenic	KCNA1 - KCNA5	3736	3741		      113.06	       12.60	rs12302829-G	rs12302829	0	12302829	Intergenic	1	0.008	8E-6	5.096910013008055		    .35	[NR] unit decrease	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	17p12	17	13781600	Intergenic	LOC100506974			100506974			rs4792394-C	rs4792394	0	4792394	intron	0	0.469	9E-6	5.045757490560675		    .06	[NR] unit decrease	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	4p15.32	4	15395740	C1QTNF7	C1QTNF7			114905			rs16891867-G	rs16891867	0	16891867	intron	0	0.218	4E-6	5.397940008672037	(AA)	    .15	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	13q31.1	13	78836439	Intergenic	LINC00331 - HSPD1P8	100874126	647298		       11.58	       12.79	rs11838918-C	rs11838918	0	11838918	Intergenic	1	0.066	3E-7	6.522878745280337	(AA)	    .28	[NR] unit increase	Illumina [948,658]	N
07/13/2010	20585324	Dick DM	06/27/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20585324	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases; 3,091 European, African American and other ancestry controls	NA	2p11.2	2	84018044	Intergenic	RPL37P10 - ST6GALNAC2P1	100271015	100422716		      422.80	       21.87	rs13398848-G	rs13398848	0	13398848	Intergenic	1	0.181	1E-6	5.999999999999999	(AA)	    .17	[NR] unit increase	Illumina [948,658]	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	2p16.1	2	60357684	BCL11A	RNA5SP94 - MIR4432	100873327	100616473		      662.82	       29.68	rs243021-A	rs243021	0	243021	Intergenic	1	NR	3E-15	14.52287874528034		   1.08	[1.06-1.10] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	5q13.3	5	77129124	ZBED3	ZBED3-AS1			728723			rs4457053-G	rs4457053	0	4457053	intron	0	NR	3E-12	11.52287874528034		   1.08	[1.06-1.11] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	7q32.3	7	130782095	KLF14	KLF14 - MIR29A	136259	407021		       48.06	       94.65	rs972283-G	rs972283	0	972283	Intergenic	1	NR	2E-10	9.698970004336017		   1.07	[1.05-1.10] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	8q22.1	8	94948283	TP53INP1	TP53INP1;LOC101927002			94241;101927002			rs896854-T	rs896854	0	896854	intron;nearGene-5	0	NR	1E-9	8.999999999999998		   1.06	[1.04-1.09] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	9q21.31	9	79337213	CHCHD9	KRT18P24 - CHCHD2P9	340460	645345		      299.47	       54.05	rs13292136-C	rs13292136	0	13292136	Intergenic	1	NR	3E-8	7.522878745280337		   1.11	[1.07-1.15] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	11p15.5	11	2670241	KCNQ1	KCNQ1;KCNQ1OT1			3784;10984			rs231362-G	rs231362	0	231362	intron;ncRNA	0	NR	3E-13	12.52287874528034		   1.08	[1.06-1.10] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	11q13.4	11	72722053	CENTD2	ARAP1			116985			rs1552224-A	rs1552224	0	1552224	intron	0	NR	1E-22	22		   1.14	[1.11-1.17] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	12q14.3	12	65781114	HMGA2	RPSAP52			204010			rs1531343-C	rs1531343	0	1531343	intron	0	NR	4E-9	8.397940008672036		   1.10	[1.07-1.14] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	12q24.31	12	121022883	HNF1A	OASL			8638			rs7957197-T	rs7957197	0	7957197	intron	0	NR	2E-8	7.698970004336018		   1.07	[1.05-1.10] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	15q25.1	15	80139880	ZFAND6	ZFAND6 - FAH	54469	2184		        1.49	       13.01	rs11634397-G	rs11634397	0	11634397	Intergenic	1	NR	2E-9	8.698970004336019		   1.06	[1.04-1.08] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	15q26.1	15	90978107	PRC1	PRC1;PRC1-AS1			9055;100507118			rs8042680-A	rs8042680	0	8042680	intron;intron	0	NR	2E-10	9.698970004336017		   1.07	[1.05-1.09] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	Xq28	23	153634467	DUSP9	KRT18P48 - DUSP9	340598	1852		       29.32	        7.98	rs5945326-A	rs5945326	0	5945326	Intergenic	1	NR	3E-10	9.522878745280336		   1.27	[1.18-1.37] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	2q36.3	2	226155937	IRS1	LOC646736			646736			rs7578326-A	rs7578326	0	7578326	intron	0	NR	5E-20	19.30102999566398		   1.11	[1.08-1.13] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	11q14.3	11	92940662	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      441.70	       28.96	rs1387153-T	rs1387153	0	1387153	Intergenic	1	NR	8E-15	14.09691001300805		   1.09	[1.06-1.11] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	3p25.2	3	12248301	PPARG	TIMP4 - GSTM5P1	7079	100505557		       88.95	        9.08	rs13081389-A	rs13081389	0	13081389	Intergenic	1	NR	2E-7	6.698970004336019		   1.24	[1.15-1.35] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	3q27.2	3	185811292	IGF2BP2	IGF2BP2			10644			rs1470579-C	rs1470579	0	1470579	intron	0	NR	2E-9	8.698970004336019		   1.14	[1.09-1.19] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	4p16.1	4	6301295	WFS1	WFS1			7466			rs1801214-T	rs1801214	0	1801214	missense	0	NR	3E-8	7.522878745280337		   1.13	[1.08-1.18] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	6p22.3	6	20687890	CDKAL1	CDKAL1			54901			rs10440833-A	rs10440833	0	10440833	intron	0	NR	2E-22	21.69897000433602		   1.25	[1.20-1.31] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	7p15.1	7	28156603	JAZF1	JAZF1			221895			rs849134-A	rs849134	0	849134	intron	0	NR	3E-9	8.522878745280337		   1.13	[1.09-1.18] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	8q24.11	8	117172786	SLC30A8	SLC30A8			169026			rs3802177-G	rs3802177	0	3802177	UTR-3	0	NR	1E-8	8		   1.15	[1.10-1.21] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	9p21.3	9	22133285	CDKN2A,CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      120.75	      313.56	rs10965250-G	rs10965250	0	10965250	Intergenic	1	NR	1E-10	10		   1.20	[1.13-1.27] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	10q23.33	10	92705802	HHEX,IDE	HHEX - EXOC6	3087	54536		       10.15	      121.03	rs5015480-C	rs5015480	0	5015480	Intergenic	1	NR	1E-15	15		   1.18	[1.13-1.23] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	NR	2E-51	50.69897000433601		   1.40	[1.34-1.46] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	12q21.1	12	71241014	TSPAN8,LGR5	TSPAN8 - LGR5	7103	8549		       83.02	      198.14	rs4760790-A	rs4760790	0	4760790	Intergenic	1	NR	4E-6	5.397940008672037		   1.11	[1.06-1.16] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	16q12.2	16	53811575	FTO	FTO			79068			rs11642841-A	rs11642841	0	11642841	intron	0	NR	3E-8	7.522878745280337		   1.13	[1.08-1.18] 	Affymetrix & Illumina [2,426,886] (imputed)	N
07/12/2010	20581827	Voight BF	06/27/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20581827	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	17q12	17	37738049	HNF1B,TCF2	HNF1B			6928			rs4430796-G	rs4430796	0	4430796	intron	0	NR	2E-6	5.698970004336018		   1.14	[1.08-1.20] 	Affymetrix & Illumina [2,426,886] (imputed)	N
01/14/2012	20600896	Engelman CD	06/26/2010	J Steroid Biochem Mol Biol	http://www.ncbi.nlm.nih.gov/pubmed/20600896	Genome-wide association study of vitamin D concentrations in Hispanic Americans: the IRAS family study.	Vitamin D levels	229 Hispanic individuals from 34 families	961 Hispanic individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [309,200]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	1q21.3	1	152090291	TCHH	TCHHL1			126637			rs17646946-A	rs17646946	0	17646946	nearGene-5	0	0.20	2E-42	41.69897000433601	(hair curl)	    .29	[NR] unit decrease	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	1q21.3	1	152520678	LCE3E	CRCT1 - LCE3E	54544	353145		        4.67	       45.02	rs499697-G	rs499697	0	499697	Intergenic	1	0.29	1E-10	10	(hair curl)	    .13	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q35	2	218891661	WNT10A	WNT10A			80326			rs7349332-T	rs7349332	0	7349332	intron	0	0.14	3E-14	13.52287874528034	(hair curl)	    .19	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	1q44	1	248333561	OR2M7	OR2M7 - OR14C36	391196	127066		        8.99	       15.21	rs4481887-G	rs4481887	0	4481887	Intergenic	1	0.74	7E-24	23.15490195998574	(asparagus anosmia)	   1.67	[NR] 	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q22.3	2	145367955	Intergenic	RPL6P5 - RNU7-2P	100270844	100147745		       29.89	      777.20	rs10427255-C	rs10427255	0	10427255	Intergenic	1	0.46	1E-11	11	(sneeze)	   1.32	[NR] 	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	9q34.11	9	129681820	NR	PRRX2			51450			rs7866070-?	rs7866070	0	7866070	intron	0	NR	7E-7	6.154901959985743	(astigmatism)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	9p24.1	9	7925381	NR	TMEM261 - PTPRD	90871	5789		      125.58	      388.87	rs1535480-?	rs1535480	0	1535480	Intergenic	1	NR	4E-7	6.397940008672037	(braces)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q24.2	2	162103238	NR	EIF3EP2 - GCG	100132597	2641		       12.96	       39.63	rs2270447-?	rs2270447	0	2270447	Intergenic	1	NR	8E-7	6.096910013008056	(earlobes)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	10p12.2	10	24206657	NR	KIAA1217			56243			rs11013962-?	rs11013962	0	11013962	intron	0	NR	3E-7	6.522878745280337	(earlobes)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q24.3	2	165034223	NR	LOC101929658			101929658			rs776488-?	rs776488	0	776488	intron	0	NR	2E-7	6.698970004336019	(footedness)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	14q24.3	14	74085267	NR	ALDH6A1;LIN52			4329;91750			rs2239557-?	rs2239557	0	2239557	nearGene-5;intron	0	NR	3E-7	6.522878745280337	(morningness)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	11q22.3	11	107610792	NR	ELMOD1			55531			rs10431058-?	rs10431058	0	10431058	intron	0	NR	8E-7	6.096910013008056	(optimism)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	15q26.1	15	89904714	NR	C15orf38;C15orf38-AP3S2			348110;100526783			rs7178909-?	rs7178909	0	7178909	intron;intron	0	NR	5E-7	6.30102999566398	(optimism)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	21q22.3	21	42286991	NR	ABCG1			9619			rs425215-?	rs425215	0	425215	intron	0	NR	8E-7	6.096910013008056	(optimism)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	6p21.33	6	31200252	NR	HCG27			253018			rs6903896-?	rs6903896	0	6903896	intron	0	NR	6E-7	6.221848749616355	(sneeze)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	8q24.22	8	132091043	NR	HHLA1			10086			rs2014357-?	rs2014357	0	2014357	intron	0	NR	9E-7	6.045757490560675	(sweet tooth)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	15q13.1	15	28120472	OCA2	HERC2			8924			rs12913832-A	rs12913832	0	12913832	intron	0	0.23	1E-300	299.9999999999999	(eye color)	   2.49	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-T	rs12896399	0	12896399	Intergenic	1	0.44	1E-16	16	(eye color)	    .34	[NR] unit decrease	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-T	rs12203592	0	12203592	intron	0	0.18	2E-15	14.69897000433602	(eye color)	    .42	[NR] unit decrease	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	5p13.2	5	33951588	SLC45A2	SLC45A2			51151			rs16891982-C	rs16891982	0	16891982	missense	0	0.03	1E-12	12	(eye color)	    .84	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	11q14.3	11	89277878	TYR	TYR			7299			rs1393350-A	rs1393350	0	1393350	intron	0	0.27	3E-9	8.522878745280337	(eye color)	    .28	[NR] unit decrease	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	15q13.1	15	28120472	OCA2	HERC2			8924			rs12913832-A	rs12913832	0	12913832	intron	0	0.23	3E-52	51.52287874528034	(green eyes)	   8.43	[NR] 	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-G	rs12896399	0	12896399	Intergenic	1	0.44	2E-23	22.69897000433602	(green eyes)	   1.73	[NR] 	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	11q14.3	11	89272085	TYR	TYR			7299			rs1847134-A	rs1847134	0	1847134	intron	0	0.68	1E-15	15	(green eyes)	   1.58	[NR] 	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-T	rs12203592	0	12203592	intron	0	0.18	2E-91	90.69897000433602		   1.61	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	16q24.3	16	89752324	MC1R	FANCA			2175			rs12931267-G	rs12931267	0	12931267	intron	0	0.08	8E-62	61.09691001300805		   1.88	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	20q11.22	20	35279894	ASIP	EIF6;MMP24-AS1			3692;101410538			rs619865-A	rs619865	0	619865	intron;nearGene-5	0	0.10	5E-14	13.30102999566398		    .77	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	9p22.2	9	16864523	BNC2	BNC2			54796			rs2153271-C	rs2153271	0	2153271	intron	0	0.41	4E-10	9.397940008672037		    .40	[NR] unit decrease	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	15q13.1	15	28120472	OCA2	HERC2			8924			rs12913832-A	rs12913832	0	12913832	intron	0	0.23	9E-88	87.04575749056066	(hair color)	    .97	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-T	rs12203592	0	12203592	intron	0	0.18	2E-28	27.69897000433602	(hair color)	    .59	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	5p13.2	5	33951588	SLC45A2	SLC45A2			51151			rs16891982-C	rs16891982	0	16891982	missense	0	0.03	4E-20	19.39794000867203	(hair color)	   1.10	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	16q24.3	16	89752324	MC1R	FANCA			2175			rs12931267-G	rs12931267	0	12931267	intron	0	0.08	3E-10	9.522878745280336	(hair color)	    .56	[NR] unit decrease	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	16q24.3	16	89752324	MC1R	FANCA			2175			rs12931267-G	rs12931267	0	12931267	intron	0	0.08	5E-87	86.30102999566398	(red hair)	    .56	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	20q11.21	20	33363039	ASIP	CDK5RAP1			51654			rs291671-G	rs291671	0	291671	intron	0	0.10	2E-15	14.69897000433602	(red hair)	    .22	[NR] unit increase	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-T	rs12896399	0	12896399	Intergenic	1	0.44	5E-13	12.30102999566398	(hair color)	    .31	[NR] unit decrease	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	5p13.2	5	33951588	NR	SLC45A2			51151			rs16891982-?	rs16891982	0	16891982	missense	0	NR	4E-20	19.39794000867203	(hair color)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	8q24.3	8	141622215	NR	HNRNPA1P38 - MIR1302-7	100421384	100302147		      161.99	      164.03	rs13263959-?	rs13263959	0	13263959	Intergenic	1	NR	8E-7	6.096910013008056	(hair color)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	11q13.3	11	69072692	NR	TPCN2			219931			rs3750965-?	rs3750965	0	3750965	missense	0	NR	3E-7	6.522878745280337	(hair color)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	11q24.2	11	126426694	NR	KIRREL3			84623			rs4935969-?	rs4935969	0	4935969	intron	0	NR	4E-7	6.397940008672037	(hair color)	NR	NR	Illumina [535,076]	N
07/16/2010	20585627	Eriksson N	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585627	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	6p25.3	6	396321	NR	IRF4			3662			rs12203592-?	rs12203592	0	12203592	intron	0	NR	4E-7	6.397940008672037	(red hair)	NR	NR	Illumina [535,076]	N
07/12/2010	20585626	Long J	06/24/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20585626	Identification of a functional genetic variant at 16q12.1 for breast cancer risk: results from the Asia Breast Cancer Consortium.	Breast cancer	2,073 Chinese ancestry cases, 2,084 Chinese ancestry controls	15,159 East Asian ancestry cases, 12,993 East Asian ancestry controls, 2,797 European ancestry cases, 2,662 European ancestry controls	16q12.1	16	52565276	TOX3	CASC16			643714			rs4784227-T	rs4784227	0	4784227	intron	0	0.24	1E-28	28	(all races combined)	   1.24	[1.20-1.29] 	Affymetrix [684,457]	N
07/04/2010	20534544	Beall CM	06/22/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20534544	Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders.	Hemoglobin levels	35 Tibetan ancestry individuals	161 Tibetan ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [502,722]	N
07/12/2010	20570966	McGovern DP	06/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20570966	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	19q13.33	19	48705608	FUT2	FUT2			2524			rs504963-A	rs504963	0	504963	UTR-3	0	0.431	2E-8	7.698970004336018		NR	NR	Illumina [304,825]	N
07/12/2010	20570966	McGovern DP	06/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20570966	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	1p31.3	1	67236843	IL23R	IL23R			149233			rs11465804-?	rs11465804	0	11465804	intron	0	NR	1E-6	5.999999999999999		   1.89	[1.47-2.44] 	Illumina [304,825]	N
07/12/2010	20570966	McGovern DP	06/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20570966	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	2q37.1	2	233274722	ATG16L1	ATG16L1;SCARNA5			55054;677775			rs2241880-?	rs2241880	0	2241880	missense;nearGene-5	0	NR	3E-6	5.522878745280337		   1.32	[1.18-1.47] 	Illumina [304,825]	N
07/12/2010	20570966	McGovern DP	06/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20570966	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	5q31.1	5	132435113	IBD5	C5orf56			441108			rs2188962-?	rs2188962	0	2188962	intron	0	NR	1E-7	7		   1.36	[1.21-1.52] 	Illumina [304,825]	N
07/12/2010	20570966	McGovern DP	06/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20570966	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	5q33.3	5	159387525	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		       69.36	      529.21	rs10045431-?	rs10045431	0	10045431	Intergenic	1	NR	7E-8	7.154901959985742		   1.45	[1.27-1.64] 	Illumina [304,825]	N
07/12/2010	20570966	McGovern DP	06/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20570966	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	6q27	6	167024500	CCR6,FGFR10P,RNASE2	FGFR1OP			11116			rs2301436-?	rs2301436	0	2301436	intron	0	NR	6E-8	7.221848749616355		   1.37	[1.22-1.53] 	Illumina [304,825]	N
07/12/2010	20570966	McGovern DP	06/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20570966	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	16q12.1	16	50729867	NOD2	NOD2			64127			rs2066847-?	rs2066847	0	2066847	frameshift	0	NR	2E-15	14.69897000433602		   1.62	[1.42-1.86] 	Illumina [304,825]	N
07/30/2010	20558539	Kestenbaum B	06/17/2010	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/20558539	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	1p36.12	1	21496799	ALPL,NBPF3	PFN1P10 - ALPL	767853	249		       36.60	       12.18	rs1697421-A	rs1697421	0	1697421	Intergenic	1	0.49	1E-27	27		    .05	[NR] mg/dl increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/30/2010	20558539	Kestenbaum B	06/17/2010	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/20558539	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	3q21.1	3	122329797	CASR,CCDC58	CSTA			1475			rs17265703-G	rs17265703	0	17265703	intron	0	0.15	4E-9	8.397940008672036		    .04	[NR] mg/dl decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/30/2010	20558539	Kestenbaum B	06/17/2010	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/20558539	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	6p21.31	6	33738702	ITPR3,LEMD2,MLN	IP6K3			117283			rs9469578-T	rs9469578	0	9469578	intron	0	0.08	1E-11	11		    .06	[NR] mg/dl decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/30/2010	20558539	Kestenbaum B	06/17/2010	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/20558539	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	6q23.3	6	135812521	PDE7B	HMGB1P17 - PDE7B	100419974	27115		      175.81	       39.18	rs947583-C	rs947583	0	947583	Intergenic	1	0.29	3E-12	11.52287874528034		    .04	[NR] mg/dl increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/30/2010	20558539	Kestenbaum B	06/17/2010	J Am Soc Nephrol	http://www.ncbi.nlm.nih.gov/pubmed/20558539	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	12p13.32	12	4497002	FGF6,RAD51AP1,FGF23	C12orf4			57102			rs2970818-A	rs2970818	0	2970818	intron	0	0.09	4E-9	8.397940008672036		    .05	[NR] unit increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
10/31/2013	20558996	Ott J	06/17/2010	Hum Hered	http://www.ncbi.nlm.nih.gov/pubmed/20558996	Pilot Study on Schizophrenia in Sardinia.	Schizophrenia	14 Sardinian cases, 23 Sardinian controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [255,053]	N
07/12/2010	20543847	Turnbull C	06/13/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20543847	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-T	rs2736100	0	2736100	intron	0	0.49	8E-15	14.09691001300805		   1.33	[1.18-1.50] 	Illumina [298,782]	N
07/12/2010	20543847	Turnbull C	06/13/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20543847	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	5p15.33	5	1308437	TERT, CLPTM1L	TERT - MIR4457	7015	100616235		       13.39	         .87	rs4635969-T	rs4635969	0	4635969	Intergenic	1	0.19	1E-23	23		   1.54	[1.33-1.79] 	Illumina [298,782]	N
07/12/2010	20543847	Turnbull C	06/13/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20543847	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	9p24.3	9	863635	DMRT1	DMRT1			1761			rs755383-T	rs755383	0	755383	intron	0	0.62	1E-23	23		   1.37	[1.21-1.55] 	Illumina [298,782]	N
07/12/2010	20543847	Turnbull C	06/13/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20543847	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	12p13.1	12	14500933	ATF7IP	ATF7IP			55729			rs2900333-C	rs2900333	0	2900333	UTR-3	0	0.62	6E-10	9.221848749616356		   1.27	[1.12-1.44] 	Illumina [298,782]	N
07/12/2010	20543847	Turnbull C	06/13/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20543847	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	5q31.3	5	142302223	SPRY4	NDFIP1 - SPRY4	80762	81848		      147.78	        8.20	rs4624820-?	rs4624820	0	4624820	Intergenic	1	0.54	1E-14	14		   1.47	[1.33-1.64] 	Illumina [298,782]	N
07/12/2010	20543847	Turnbull C	06/13/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20543847	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	12q21.32	12	88559784	KITLG	KITLG			4254			rs3782181-?	rs3782181	0	3782181	intron	0	0.78	2E-26	25.69897000433602		   2.22	[1.89-2.56] 	Illumina [298,782]	N
07/04/2010	20548944	Hsu YH	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548944	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry women, 1,531 European ancestry  men	5,595 European ancestry women, 2,126 European ancestry men	1p13.2	1	111649500	RAP1A	RAP1A			5906			rs494453-C	rs494453	0	494453	intron	0	0.24	4E-8	7.397940008672037	(NW, men & women)	NR	NR	Affymetrix [433,510]	N
07/04/2010	20548944	Hsu YH	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548944	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry women, 1,531 European ancestry  men	5,595 European ancestry women, 2,126 European ancestry men	2q11.2	2	101052395	TBC1D8	TBC1D8			11138			rs2278729-A	rs2278729	0	2278729	intron	0	0.33	1E-7	7	(NSA, men)	    .19	[NR] unit decrease	Affymetrix [433,510]	N
07/04/2010	20548944	Hsu YH	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548944	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry women, 1,531 European ancestry  men	5,595 European ancestry women, 2,126 European ancestry men	18q11.2	18	24358694	OSBPL1A	OSBPL1A			114876			rs7227401-T	rs7227401	0	7227401	intron	0	0.39	4E-7	6.397940008672037	(NW, men)	    .17	[NR] cm increase	Affymetrix [433,510]	N
07/04/2010	20548944	Hsu YH	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548944	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry women, 1,531 European ancestry  men	5,595 European ancestry women, 2,126 European ancestry men	11p12	11	39306409	LRRC4C	RPL18P8 - LRRC4C	100129670	57689		      144.44	      807.79	rs12808199-G	rs12808199	0	12808199	Intergenic	1	0.43	9E-7	6.045757490560675	(FN BMD, men)	    .21	[NR] g/cm2 decrease	Affymetrix [433,510]	N
07/04/2010	20548944	Hsu YH	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548944	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry women, 1,531 European ancestry  men	5,595 European ancestry women, 2,126 European ancestry men	2q37.1	2	234302083	SPP2	SPP2 - RPS20P12	6694	100271083		      224.95	       27.32	rs12151790-A	rs12151790	0	12151790	Intergenic	1	0.40	5E-7	6.30102999566398	(FN BMD, women)	    .40	[NR] g/cm2 increase	Affymetrix [433,510]	N
07/04/2010	20548944	Hsu YH	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548944	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry women, 1,531 European ancestry  men	5,595 European ancestry women, 2,126 European ancestry men	8q24.12	8	118965553	TNFRSF11B	COLEC10			10584			rs2062375-G	rs2062375	0	2062375	intron	0	0.45	3E-11	10.52287874528034	(LS BMD, women)	    .14	[NR] g/cm2 increase	Affymetrix [433,510]	N
07/04/2010	20548944	Hsu YH	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548944	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry women, 1,531 European ancestry  men	5,595 European ancestry women, 2,126 European ancestry men	18q22.2	18	69475621	DOK6	DOK6			220164			rs17184557-A	rs17184557	0	17184557	intron	0	0.23	9E-7	6.045757490560675	(LS BMD, women)	    .13	[NR] g/cm2 increase	Affymetrix [433,510]	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Optic disc parameters	7,360 European ancestry individuals	4,455 European ancestry individuals	10q21.3	10	68241124	ATOH7,PBLD	ATOH7 - KRT19P4	220202	100128041		        9.01	       19.19	rs1900004-T	rs1900004	0	1900004	Intergenic	1	0.22	3E-35	34.52287874528033		    .07	[0.06-0.08] mm decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Optic disc parameters	7,360 European ancestry individuals	4,455 European ancestry individuals	1p22.1	1	91611540	CDC7,TGFBR3	RPL39P13 - HSP90B3P	100130802	343477		       11.04	       30.98	rs1192415-G	rs1192415	0	1192415	Intergenic	1	0.18	3E-28	27.52287874528033		    .06	[0.05-0.07] mm increase	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Optic disc parameters	7,360 European ancestry individuals	4,455 European ancestry individuals	16q12.1	16	51424379	SALL1	UNGP1 - HNRNPA1P48	57004	642659		      144.67	      221.38	rs1362756-C	rs1362756	0	1362756	Intergenic	1	0.28	5E-9	8.301029995663981		    .03	[0.02-0.04] mm increase	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	9p21.3	9	22003368	CDKN2B	CDKN2B;CDKN2B-AS1			1030;100048912			rs1063192-G	rs1063192	0	1063192	UTR-3;intron	0	0.46	4E-15	14.39794000867204		    .01	[0.010-0.018] mm2 decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	14q23.1	14	60606157	SIX1	RPS15AP4 - SIX1	654371	6495		        3.61	       38.54	rs10483727-T	rs10483727	0	10483727	Intergenic	1	0.41	1E-11	11		    .01	[0.008-0.016] mm2 increase	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	11q13.1	11	65481674	SCYL1	MIR612 - MALAT1	693197	378938		       37.12	       16.09	rs17146964-G	rs17146964	0	17146964	Intergenic	1	0.20	4E-9	8.397940008672036		    .01	[0.01-0.02] mm2 decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	22q12.1	22	28704723	CHEK2	CHEK2			11200			rs1547014-T	rs1547014	0	1547014	intron	0	0.29	1E-8	8		    .01	[0.007-0.015] mm2 decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	10q21.3	10	68241124	ATOH7, PBLD	ATOH7 - KRT19P4	220202	100128041		        9.01	       19.19	rs1900004-T	rs1900004	0	1900004	Intergenic	1	0.22	2E-8	7.698970004336018		    .01	[0.009-0.017] mm2 decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	13q13.3	13	36078480	DCLK1	DCLK1			9201			rs1926320-C	rs1926320	0	1926320	intron	0	0.24	1E-8	8		    .01	[0.010-0.014] mm2 increase	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	17q23.2	17	61209283	BCAS3	BCAS3			54828			rs8068952-G	rs8068952	0	8068952	intron	0	0.23	3E-8	7.522878745280337		    .01	[0.008-0.016] mm2 decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	1p36.23	1	8699495	RERE	RERE			473			rs12025126-C	rs12025126	0	12025126	intron	0	0.29	6E-8	7.221848749616355		    .01	[0.007-0.015] mm2 decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/12/2010	20548946	Ramdas WD	06/10/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20548946	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	19p13.3	19	950380	ARID3A	ARID3A			1820			rs2159128-G	rs2159128	0	2159128	intron	0	0.13	3E-7	6.522878745280337		    .02	[0.01-0.03] mm2 decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
07/01/2010	20541252	Wang TJ	06/09/2010	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/20541252	Common genetic determinants of vitamin D insufficiency: a genome-wide association study.	Vitamin D insufficiency	16,125 European ancestry individuals	17,871 European ancestry individuals	4q13.3	4	71742666	GC	GC			2638			rs2282679-?	rs2282679	0	2282679	intron	0	0.29	2E-109	108.698970004336		NR	NR	Affymetrix & Illumina [up to 2,548,976] (imputed)	N
07/01/2010	20541252	Wang TJ	06/09/2010	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/20541252	Common genetic determinants of vitamin D insufficiency: a genome-wide association study.	Vitamin D insufficiency	16,125 European ancestry individuals	17,871 European ancestry individuals	11q13.4	11	71456403	DHCR7,NADSYN1	NADSYN1			55191			rs12785878-?	rs12785878	0	12785878	intron	0	0.23	2E-27	26.69897000433602		NR	NR	Affymetrix & Illumina [up to 2,548,976] (imputed)	N
07/01/2010	20541252	Wang TJ	06/09/2010	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/20541252	Common genetic determinants of vitamin D insufficiency: a genome-wide association study.	Vitamin D insufficiency	16,125 European ancestry individuals	17,871 European ancestry individuals	11p15.2	11	14893332	CYP2R1	CYP2R1			120227			rs10741657-?	rs10741657	0	10741657	nearGene-5	0	0.40	3E-20	19.52287874528034		NR	NR	Affymetrix & Illumina [up to 2,548,976] (imputed)	N
07/01/2010	20532800	Bostrom MA	06/08/2010	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20532800	Candidate genes for non-diabetic ESRD in African Americans: a genome-wide association study using pooled DNA.	End-stage renal disease (non-diabetic)	464 African American cases, 478 African American controls	336 African American cases, 363 African American controls	22q12.3	22	36220399	MYH9	APOL4 - APOL2	80832	23780		       15.57	        5.81	rs4821469-?	rs4821469	0	4821469	Intergenic	1	0.056	2E-19	18.69897000433602		   2.86	[2.27-3.57] 	Illumina [~550,000] (pooled)	N
06/23/2010	20528957	Oedegaard KJ	06/07/2010	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/20528957	A genome-wide association study of bipolar disorder and comorbid migraine.	Migraine in psychiatric disorder	56 European ancestry bipolar disorder cases, 699 European ancestry bipolar disorder controls	131 European ancestry attention deficit hyperactivity disorder cases, 324 European ancestry attention deficit hyperactivity disorder controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [724,067]	N
07/01/2010	20529992	Teupser D	06/07/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20529992	Genetic regulation of serum phytosterol levels and risk of coronary artery disease.	Phytosterol levels	1,495 European ancestry individuals	2,917 European ancestry individuals	2p21	2	43847292	ABCG8	ABCG8			64241			rs4245791-C	rs4245791	0	4245791	intron	0	0.322	2E-50	49.69897000433602	(campesterol)	  12.00	[NR] % increase	Affymetrix [374,370]	N
07/01/2010	20529992	Teupser D	06/07/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20529992	Genetic regulation of serum phytosterol levels and risk of coronary artery disease.	Phytosterol levels	1,495 European ancestry individuals	2,917 European ancestry individuals	9q34.2	9	133263862	ABO	ABO			28			rs657152-T	rs657152	0	657152	intron	0	0.383	9E-13	12.04575749056067	(campesterol)	   8.00	[NR] % increase	Affymetrix [374,370]	N
07/01/2010	20529992	Teupser D	06/07/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20529992	Genetic regulation of serum phytosterol levels and risk of coronary artery disease.	Phytosterol levels	1,495 European ancestry individuals	2,917 European ancestry individuals	2p21	2	43846517	ABCG8	ABCG8			64241			rs41360247-C	rs41360247	0	41360247	intron	0	0.064	6E-25	24.22184874961636	(campesterol)	  14.00	[NR] % decrease	Affymetrix [374,370]	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	1q23.1	1	156899255	PEAR1	PEAR1			375033			rs12566888-A	rs12566888	0	12566888	intron	0	0.102	4E-16	15.39794000867204	(ADP)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	11p15.4	11	10647681	MRVI1	MRVI1			10335			rs7940646-T	rs7940646	0	7940646	intron	0	0.381	1E-6	5.999999999999999	(ADP)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	7q36.3	7	155969463	SHH	SHH - LINC01006	6469	100506380		      157.19	      502.64	rs6943029-A	rs6943029	0	6943029	Intergenic	1	0.067	8E-8	7.096910013008055	(ADP)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10q25.2	10	111149347	ADRA2A	ADRA2A - BTBD7P2	150	100420392		       68.44	      173.43	rs869244-A	rs869244	0	869244	Intergenic	1	0.353	3E-12	11.52287874528034	(epinephrine)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	1q23.1	1	156899255	PEAR1	PEAR1			375033			rs12566888-A	rs12566888	0	12566888	intron	0	0.103	5E-19	18.30102999566398	(epinephrine)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10q21.3	10	63501424	JMJD1C	JMJD1C			221037			rs2893923-T	rs2893923	0	2893923	intron	0	0.336	5E-8	7.30102999566398	(epinephrine)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	19q13.42	19	55014977	GP6	GP6			51206			rs1671152-T	rs1671152	0	1671152	missense	0	0.142	8E-14	13.09691001300805	(collagen)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10p13	10	13061285	MST151	CCDC3			83643			rs525455-G	rs525455	0	525455	intron	0	0.459	7E-7	6.154901959985743	(ADP)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	11p15.5	11	2529500	KCNQ1	KCNQ1			3784			rs179429-A	rs179429	0	179429	intron	0	0.167	7E-6	5.154901959985742	(ADP)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10q24.33	10	103498029	NEURL	NEURL1			9148			rs7071247-T	rs7071247	0	7071247	intron	0	0.119	2E-7	6.698970004336019	(epinephrine)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	20p13	20	4631231	PRNP	RPS4XP2 - PRNP	92507	5621		        1.01	       54.92	rs6052699-A	rs6052699	0	6052699	Intergenic	1	0.507	2E-6	5.698970004336018	(epinephrine)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	6p22.1	6	28948475	TRIM27	TRNAI25			100189401			rs4947339-T	rs4947339	0	4947339		0	0.438	2E-6	5.698970004336018	(epinehprine)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	8p22	8	14531972	SGCZ	SGCZ			137868			rs1903595-G	rs1903595	0	1903595	intron	0	0.303	5E-6	5.301029995663981	(ephinephrine)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	9p24.1	9	8196511	PTPRD	TMEM261 - PTPRD	90871	5789		      396.71	      117.74	rs7044355-G	rs7044355	0	7044355	Intergenic	1	0.501	1E-7	7	(collagen)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526338	Johnson AD	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526338	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	12q13.3	12	56810376	HSD17B6	HSD17B6 - YWHAQP3	8630	100128944		       22.59	       61.42	rs12367822-T	rs12367822	0	12367822	Intergenic	1	0.277	1E-6	5.999999999999999	(collagen)	NR	NR	Affymetrix & Illumina [~2.33 million] (imputed)	N
06/22/2010	20526339	Quan C	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526339	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Chinese Han ancestry cases, 1,429 Chinese Han ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	6	31869289	HLA-C,HLA-B	SLC44A4			80736			rs11966200-A	rs11966200	0	11966200	intron	0	0.06	1E-48	47.99999999999999		   1.90	[1.74-2.07] 	Illumina [493,909]	N
06/22/2010	20526339	Quan C	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526339	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Chinese Han ancestry cases, 1,429 Chinese Han ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6p21.33	6	31291060	HLA	TRNAI25			100189401			rs9468925-?	rs9468925	0	9468925		0	0.617	2E-33	32.69897000433601		   1.35	[1.28-1.41] 	Illumina [493,909]	N
06/22/2010	20526339	Quan C	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526339	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Chinese Han ancestry cases, 1,429 Chinese Han ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	6q27	6	166946901	RNASET2, FGFR1OP, CCR6	RNASET2			8635			rs2236313-T	rs2236313	0	2236313	intron	0	0.38	1E-16	16		   1.20	[1.15-1.25] 	Illumina [493,909]	N
06/22/2010	20526339	Quan C	06/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20526339	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Chinese Han ancestry cases, 1,429 Chinese Han ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	10q22.3	10	79256139	ZMIZ1	ZMIZ1			57178			rs11593576-?	rs11593576	0	11593576	intron	0	0.805	8E-7	6.096910013008056		   1.14	[1.09-1.20] 	Illumina [493,909]	N
06/22/2010	20522523	Kasperaviciute D	06/03/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20522523	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	6q14.1	6	79855119	AL132875.2, SH3BGRL2, ELOVL4	C6orf7			89758			rs346291-?	rs346291	0	346291	intron	0	0.634	3E-7	6.522878745280337		   1.20	[1.12-1.30] 	Illumina [528,745]	N
06/22/2010	20522523	Kasperaviciute D	06/03/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20522523	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	16p13.3	16	4053870	ADCY9	ADCY9			115			rs2601828-A	rs2601828	0	2601828	intron	0	0.222	1E-6	5.999999999999999		   1.12	[1.12-1.31] 	Illumina [528,745]	N
06/22/2010	20522523	Kasperaviciute D	06/03/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20522523	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	4q13.1	4	61587491	LPHN3	LPHN3			23284			rs2172802-?	rs2172802	0	2172802	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [528,745]	N
06/22/2010	20522523	Kasperaviciute D	06/03/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20522523	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	9q21.33	9	85315130	AL354897.1	NTRK2 - STK33P1	4915	553118		      288.06	      177.45	rs2841498-?	rs2841498	0	2841498	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [528,745]	N
06/22/2010	20522523	Kasperaviciute D	06/03/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20522523	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	3p24.3	3	21677754	ZNF385D	ZNF385D			79750			rs1490157-?	rs1490157	0	1490157	intron	0	0.739	5E-6	5.301029995663981		   1.20	[1.11-1.32] 	Illumina [528,745]	N
06/22/2010	20522523	Kasperaviciute D	06/03/2010	Brain	http://www.ncbi.nlm.nih.gov/pubmed/20522523	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	9p23	9	10260263	PTPRD	PTPRD			5789			rs2475335-?	rs2475335	0	2475335	intron	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [528,745]	N
06/21/2010	20516156	Lewis CM	06/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20516156	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	1q31.3	1	193952418	LOC647167	RPL23AP22 - EEF1A1P14	100271291	647167		      195.15	      236.49	rs606149-?	rs606149	0	606149	Intergenic	1	0.46	3E-6	5.522878745280337		   1.25	[NR] 	Illumina [471,747]	N
06/21/2010	20516156	Lewis CM	06/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20516156	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	5q14.3	5	83594091	VCAN	VCAN - HAPLN1	1462	1404		       11.79	       44.11	rs310501-?	rs310501	0	310501	Intergenic	1	0.33	7E-6	5.154901959985742		   1.16	[NR] 	Illumina [471,747]	N
06/21/2010	20516156	Lewis CM	06/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20516156	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	3q26.31	3	174311255	NLGN1	NLGN1 - RPL8P4	22871	402150		       24.61	       65.95	rs13074924-?	rs13074924	0	13074924	Intergenic	1	0.36	9E-6	5.045757490560675		   1.18	[NR] 	Illumina [471,747]	N
06/21/2010	20516156	Lewis CM	06/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20516156	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	6q27	6	164479565	LOC728275	QKI - C6orf118	9444	168090		      900.97	      785.03	rs4709845-?	rs4709845	0	4709845	Intergenic	1	0.85	9E-6	5.045757490560675		   1.21	[NR] 	Illumina [471,747]	N
06/18/2010	20520587	Nielsen DA	06/01/2010	Psychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/20520587	Genome-wide association study identifies genes that may contribute to risk for developing heroin addiction.	Heroin addiction	200 European ancestry cases, 150 European ancestry controls, 125 African American cases, 100 African American controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [up to 113,174] (pooled)	N
06/14/2010	20463552	Wu C	06/01/2010	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/20463552	Genome-wide examination of genetic variants associated with response to platinum-based chemotherapy in patients with small-cell lung cancer.	Response to platinum-based chemotherapy in small-cell lung cancer	245 Chinese Han ancestry cases	183 Chinese Han ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [265,996]	N
06/14/2010	20512145	Bei JX	05/30/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20512145	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p22.1	6	29938914	HLA-A	TRNAI25			100189401			rs2860580-?	rs2860580	0	2860580		0	0.62	5E-67	66.30102999566397		   1.72	[1.61-1.82] 	Illumina [464,328]	N
06/14/2010	20512145	Bei JX	05/30/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20512145	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.33	6	31295974	HLA-B,HLA-C	TRNAI25			100189401			rs2894207-?	rs2894207	0	2894207		0	0.82	3E-33	32.52287874528034		   1.64	[1.52-1.75] 	Illumina [464,328]	N
06/14/2010	20512145	Bei JX	05/30/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20512145	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	6p21.32	6	32624960	HLA-DQ,HLA-DR	TRNAI25			100189401			rs28421666-?	rs28421666	0	28421666		0	0.88	2E-18	17.69897000433602		   1.49	[1.37-1.64] 	Illumina [464,328]	N
06/14/2010	20512145	Bei JX	05/30/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20512145	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	13q12.12	13	23631056	TNFRSF19	TNFRSF19			55504			rs9510787-G	rs9510787	0	9510787	intron	0	0.37	2E-9	8.698970004336019		   1.20	[1.10-1.30] 	Illumina [464,328]	N
06/14/2010	20512145	Bei JX	05/30/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20512145	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	3q26.2	3	169364845	MDS1,EVI1	MECOM			2122			rs6774494-?	rs6774494	0	6774494	intron	0	0.35	1E-8	8		   1.19	[1.12-1.27] 	Illumina [464,328]	N
06/14/2010	20512145	Bei JX	05/30/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20512145	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	9p21.3	9	22043927	CDNK2A,CDKN2B	CDKN2B-AS1			100048912			rs1412829-?	rs1412829	0	1412829	intron	0	0.89	5E-7	6.30102999566398		   1.28	[1.18-1.41] 	Illumina [464,328]	N
06/14/2010	20512145	Bei JX	05/30/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20512145	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	13q12.12	13	23553071	TNFRSF19	LINC00327 - TNFRSF19	100506697	55504		       65.61	       17.30	rs1572072-?	rs1572072	0	1572072	Intergenic	1	0.74	1E-8	8		   1.19	[1.11-1.27] 	Illumina [464,328]	N
06/14/2010	20484958	Diergaarde B	05/17/2010	Pancreatology	http://www.ncbi.nlm.nih.gov/pubmed/20484958	Pooling-based genome-wide association study implicates gamma-glutamyltransferase 1 (GGT1) gene in pancreatic carcinogenesis.	Pancreatic cancer	97 European ancestry cases, 93 European ancestry controls	63 European ancestry cases, 79 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [>900,000](pooled)	N
06/14/2010	20463881	Liu F	05/16/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20463881	Digital quantification of human eye color highlights genetic association of three new loci.	Eye color traits	5,951 European ancestry individuals	3,543 European ancestry individuals	17q25.3	17	81629785	NPLOC4,HGS	NPLOC4			55666			rs9894429-T	rs9894429	0	9894429	cds-synon	0	NR	9E-14	13.04575749056067	(CHS1)	    .12	[NR] % increase	Illumina [2,543,887] (imputed)	N
06/14/2010	20463881	Liu F	05/16/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20463881	Digital quantification of human eye color highlights genetic association of three new loci.	Eye color traits	5,951 European ancestry individuals	3,543 European ancestry individuals	21q22.13	21	37118795	TTC3,DSCR9	TTC3			7267			rs1003719-A	rs1003719	0	1003719	intron	0	NR	2E-10	9.698970004336017	(CHS1)	    .10	[NR] % decrease	Illumina [2,543,887] (imputed)	N
06/14/2010	20463881	Liu F	05/16/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20463881	Digital quantification of human eye color highlights genetic association of three new loci.	Eye color traits	5,951 European ancestry individuals	3,543 European ancestry individuals	15q13.1	15	28120472	HERC2,OCA	HERC2			8924			rs12913832-?	rs12913832	0	12913832	intron	0	NR	1E-300	299.9999999999999	(RS123 cohort)	NR	NR	Illumina [2,543,887] (imputed)	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	21q21.1	21	16455971	C21orf34	LINC00478			388815			rs2823819-C	rs2823819	0	2823819	intron	0	0.18	7E-7	6.154901959985743		   1.65	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	16p13.13	16	10539308	EMP2	EMP2			2013			rs11074889-A	rs11074889	0	11074889	intron	0	0.16	7E-7	6.154901959985743		   1.68	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	17q24.1	17	65646424	CCDC46	CEP112			201134			rs8074751-?	rs8074751	0	8074751	intron	0	0.61	1E-6	5.999999999999999		   1.45	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	4q22.3	4	94912883	BMPR1B	BMPR1B			658			rs1859156-?	rs1859156	0	1859156	intron	0	0.79	2E-6	5.698970004336018		   1.54	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	15q14	15	36001404	ATPBD4	MIR4510 - COX6CP4	100616293	100288892		       74.48	      570.53	rs4923705-C	rs4923705	0	4923705	Intergenic	1	0.27	2E-6	5.698970004336018		   1.51	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	6p24.3	6	9030103	LOC389365	HULC - OFCC1	728655	266553		      376.26	      667.53	rs438259-?	rs438259	0	438259	Intergenic	1	0.28	4E-6	5.397940008672037		   1.49	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	2q37.1	2	233675678	UGT1A9	UGT1A10;UGT1A8;UGT1A9			54575;54576;54600			rs2602381-A	rs2602381	0	2602381	intron;intron;intron	0	0.48	4E-6	5.397940008672037		   1.42	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	3q24	3	143264057	SLC9A9	PBX2P1 - SLC9A9	5088	285195		       84.80	        1.17	rs9810857-T	rs9810857	0	9810857	Intergenic	1	0.49	6E-6	5.221848749616356		   1.41	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	4q25	4	110105771	ELOVL6	ELOVL6			79071			rs10011926-?	rs10011926	0	10011926	intron	0	0.78	8E-6	5.096910013008055		   1.49	[NR] 	Illumina [835,136]	N
09/07/2010	20732626	Mick E	05/14/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20732626	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	7q35	7	145144438	LOC643308	RPL7P59 - CNTNAP2	643308	26047		      103.48	      971.92	rs10487524-T	rs10487524	0	10487524	Intergenic	1	0.15	9E-6	5.045757490560675		   1.60	[NR] 	Illumina [835,136]	N
06/14/2010	20485516	Lu Y	05/13/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20485516	Common genetic variants near the Brittle Cornea Syndrome locus ZNF469 influence the blinding disease risk factor central corneal thickness.	Central corneal thickness	3,473 European ancestry twins in 1,905 families, 301 European ancestry thin CCT cases, 301 European ancestry thick CCT controls	NA	13q14.11	13	40536747	FOXO1	LOC100289058			100289058			rs2721051-G	rs2721051	0	2721051		0	NR	5E-10	9.301029995663981		    .24	[0.16-0.32] unit decrease	Illumina [~2.4 million] (pooled)	N
06/14/2010	20485516	Lu Y	05/13/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20485516	Common genetic variants near the Brittle Cornea Syndrome locus ZNF469 influence the blinding disease risk factor central corneal thickness.	Central corneal thickness	3,473 European ancestry twins in 1,905 families, 301 European ancestry thin CCT cases, 301 European ancestry thick CCT controls	NA	16q24.2	16	88264518	ZNF469	BANP - ZNF469	54971	84627		      187.20	      162.95	rs12447690-C	rs12447690	0	12447690	Intergenic	1	NR	9E-11	10.04575749056067		    .16	[0.10-0.22] unit increase	Illumina [~2.4 million] (pooled)	N
06/14/2010	20460622	Seshadri S	05/12/2010	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/20460622	Genome-wide analysis of genetic loci associated with Alzheimer disease.	Alzheimer's disease	973 incident AD cases, 2,033 prevalent AD cases, 22,604  controls of European and Hispanic ancestry 	6,505 European ancestry cases, 13,532 European ancestry controls	19q13.32	19	44892362	APOE	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	0.14	1E-295	295		   2.53	[2.41-2.66] 	Affymetrix and Illumina [~2.5 million] (imputed)	N
06/09/2010	20460270	Garcia-Barcelo MM	05/11/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20460270	Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2.	Biliary atresia	281 Chinese ancestry cases, 481 Chinese ancestry controls	124 Chinese ancestry cases, 90 Chinese ancestry controls	10q25.1	10	109975992	XPNPEP1,ADD3	ADD3-AS1			100505933			rs17095355-T	rs17095355	0	17095355	intron	0	0.409	7E-9	8.154901959985743		   1.77	[1.38-2.26] 	Affymetrix [289,118]	N
06/09/2010	20460270	Garcia-Barcelo MM	05/11/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20460270	Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2.	Biliary atresia	281 Chinese ancestry cases, 481 Chinese ancestry controls	124 Chinese ancestry cases, 90 Chinese ancestry controls	12q13.13	12	53876444	HOXC13	CISTR - HOXC13-AS	102216268	100874366		      119.41	       58.88	rs2120991-A	rs2120991	0	2120991	Intergenic	1	0.134	9E-6	5.045757490560675		   2.14	[1.58-2.89] 	Affymetrix [289,118]	N
06/09/2010	20460270	Garcia-Barcelo MM	05/11/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20460270	Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2.	Biliary atresia	281 Chinese ancestry cases, 481 Chinese ancestry controls	124 Chinese ancestry cases, 90 Chinese ancestry controls	13q12.3	13	29884600	UBL3	LINC00297			100874059			rs9314986-G	rs9314986	0	9314986	intron	0	0.044	2E-6	5.698970004336018		   2.95	[1.89-4.60] 	Affymetrix [289,118]	N
06/13/2010	20453841	Kochi Y	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453841	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6q27	6	167119305	CCR6	CCR6			1235			rs3093024-T	rs3093024	0	3093024	intron	0	0.46	8E-19	18.09691001300805		   1.19	[1.15-1.24] 	Illumina [393,217]	N
06/13/2010	20453841	Kochi Y	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453841	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6p21.32	6	32703326	HLA-DRB1	TRNAI25			100189401			rs13192471-G	rs13192471	0	13192471		0	0.22	2E-58	57.69897000433602		   1.97	[1.82-2.14] 	Illumina [393,217]	N
06/13/2010	20453841	Kochi Y	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453841	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	0.33	2E-6	5.698970004336018		   1.17	[1.10-1.25] 	Illumina [393,217]	N
06/13/2010	20453841	Kochi Y	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453841	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	6q23.3	6	137874929	OLIG3,TNFAIP3	TNFAIP3			7128			rs2230926-C	rs2230926	0	2230926	missense	0	0.07	2E-6	5.698970004336018		   1.31	[1.17-1.46] 	Illumina [393,217]	N
06/08/2010	20453840	Sanna S	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453840	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	3q13.11	3	105867870	CBLB	CBLB			868			rs9657904-T	rs9657904	0	9657904	intron	0	0.826	2E-10	9.698970004336017		   1.40	[1.27-1.57] 	Affymetrix [6,607,266] (imputed)	N
06/08/2010	20453840	Sanna S	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453840	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	6p21.32	6	32635230	HLA-DRB,HLA-DQB1	TRNAI25			100189401			rs2040406-G	rs2040406	0	2040406		0	0.26	1E-20	20		   2.05	[NR] 	Affymetrix [6,607,266] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2p14	2	65368452	SPRED2	SPRED2			200734			rs934734-G	rs934734	0	934734	intron	0	0.49	5E-10	9.301029995663981		   1.13	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	5q11.2	5	56142753	ANKRD55,IL6ST	ANKRD55			79722			rs6859219-C	rs6859219	0	6859219	intron	0	0.79	1E-11	11		   1.28	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	5q21.1	5	103261019	C5orf30	C5orf30			90355			rs26232-C	rs26232	0	26232	intron	0	0.68	4E-8	7.397940008672037		   1.14	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	3p14.3	3	58571114	PXK	FAM107A			11170			rs13315591-C	rs13315591	0	13315591	intron	0	0.09	5E-8	7.30102999566398		   1.29	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	4p15.2	4	26106575	RBPJ	SMIM20 - RBPJ	389203	3516		      176.70	       56.92	rs874040-C	rs874040	0	874040	Intergenic	1	0.30	1E-16	16		   1.14	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6q27	6	167120802	CCR6	CCR6			1235			rs3093023-A	rs3093023	0	3093023	intron	0	0.43	2E-11	10.69897000433602		   1.13	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	7q32.1	7	128954129	IRF5	TNPO3			23534			rs10488631-C	rs10488631	0	10488631	nearGene-3	0	0.11	4E-11	10.39794000867204		   1.19	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q11.2	2	100190478	AFF3	AFF3 - LINC01104	3899	150577		       47.90	       17.78	rs11676922-T	rs11676922	0	11676922	Intergenic	1	0.46	1E-14	14		   1.12	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	9p13.3	9	34743684	CCL21	LOC101929761			101929761			rs951005-A	rs951005	0	951005	intron	0	0.84	4E-10	9.397940008672037		   1.19	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	10p15.1	10	6056986	IL2RA	IL2RA			3559			rs706778-T	rs706778	0	706778	intron	0	0.40	1E-11	11		   1.14	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1q24.2	1	167439433	CD247	CD247			919			rs840016-C	rs840016	0	840016	intron	0	0.58	2E-6	5.698970004336018		   1.11	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	4q27	4	122297158	IL2,IL21	KIAA1109			84162			rs13119723-A	rs13119723	0	13119723	intron	0	0.15	7E-7	6.154901959985743		   1.12	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.51	6E-6	5.221848749616356		   1.08	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	14q24.3	14	75494193	BATF	JDP2 - BATF	122953	10538		       21.49	       28.25	rs7155603-G	rs7155603	0	7155603	Intergenic	1	0.19	1E-7	7		   1.16	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	17q12	17	39884510	IKZF3	ZPBP2 - GSDMB	124626	55876		        6.61	       20.09	rs2872507-A	rs2872507	0	2872507	Intergenic	1	0.47	9E-7	6.045757490560675		   1.10	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	21q22.3	21	42416077	UBASH3A	UBASH3A			53347			rs11203203-A	rs11203203	0	11203203	intron	0	0.37	4E-6	5.397940008672037		   1.11	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1p36.32	1	2622185	TNFRSF14	MMEL1			79258			rs3890745-T	rs3890745	0	3890745	intron	0	0.68	4E-6	5.397940008672037		   1.12	[1.06-1.18] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-A	rs2476601	0	2476601	missense;intron	0	0.10	9E-74	73.04575749056067		   1.94	[1.81-2.08] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2p16.1	2	60908994	REL	REL			5966			rs13031237-T	rs13031237	0	13031237	intron	0	0.36	8E-7	6.096910013008056		   1.13	[1.07-1.18] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q11.2	2	100219272	AFF3	LINC01104			150577			rs10865035-A	rs10865035	0	10865035	intron	0	0.47	2E-6	5.698970004336018		   1.12	[1.07-1.17] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	0.22	3E-7	6.522878745280337		   1.16	[1.10-1.23] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q33.2	2	203874196	CTLA4	CTLA4			1493			rs3087243-G	rs3087243	0	3087243	nearGene-3	0	0.56	1E-8	8		   1.15	[1.10-1.20] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6q23.3	6	137685367	TNFAIP3	BTF3L4P3 - TNFAIP3	391040	7128		      140.92	      181.82	rs6920220-A	rs6920220	0	6920220	Intergenic	1	0.22	9E-13	12.04575749056067		   1.22	[1.16-1.29] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	9q33.2	9	120927961	TRAF1,C5	TRAF1			7185			rs3761847-G	rs3761847	0	3761847	intron	0	0.43	2E-7	6.698970004336019		   1.13	[1.08-1.18] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	10p15.1	10	6351298	PRKCQ	DKFZp667F0711			399716			rs4750316-G	rs4750316	0	4750316	ncRNA	0	0.81	2E-6	5.698970004336018		   1.15	[1.09-1.22] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	20q13.12	20	46119308	CD40	CD40			958			rs4810485-T	rs4810485	0	4810485	intron	0	0.25	3E-9	8.522878745280337		   1.18	[1.11-1.25] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1p34.3	1	38158457	POU3F1	MIR3659 - TUBB6P1	100500801	100418964		       69.13	      225.39	rs12131057-G	rs12131057	0	12131057	Intergenic	1	0.76	4E-7	6.397940008672037		   1.16	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	15q23	15	69703005	KIF3	RPLP1 - GEMIN8P1	6176	100128431		      247.46	      100.11	rs17374222-A	rs17374222	0	17374222	Intergenic	1	0.49	2E-6	5.698970004336018		   1.13	[NR] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/13/2010	20453842	Stahl EA	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453842	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	6p21.32	6	32315077	HLA-DRB1	C6orf10			10665			rs6910071-G	rs6910071	0	6910071	intron	0	0.22	1E-299	298.9999999999999		   2.88	[2.73-3.03] 	Affymetrix & Illumina [~2,716,259] (imputed)	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	10q26.13	10	121577821	FGFR2	FGFR2			2263			rs2981579-A	rs2981579	0	2981579	intron	0	0.42	4E-31	30.39794000867203		   1.43	[1.35-1.53] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	16q12.1	16	52552429	TOX3	CASC16			643714			rs3803662-A	rs3803662	0	3803662	ncRNA	0	0.26	3E-15	14.52287874528034		   1.30	[1.22-1.39] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	5q11.2	5	56736057	MAP3K1	RPL26P19 - MAP3K1	441073	4214		      230.94	       79.02	rs889312-C	rs889312	0	889312	Intergenic	1	0.28	5E-9	8.301029995663981		   1.22	[1.14-1.30] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	8q24.21	8	127375606	Intergenic	LOC101930033			101930033			rs1562430-T	rs1562430	0	1562430	intron	0	0.58	6E-7	6.221848749616355		   1.17	[1.10-1.25] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	2q35	2	217041109	Intergenic	TNP1 - DIRC3	7141	729582		      181.05	      242.91	rs13387042-A	rs13387042	0	13387042	Intergenic	1	0.49	2E-10	9.698970004336017		   1.21	[1.14-1.29] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	11p15.5	11	1920716	LSP1	TNNT3			7140			rs909116-T	rs909116	0	909116	intron	0	0.53	7E-7	6.154901959985743		   1.17	[1.10-1.24] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	6q25.1	6	151592978	ESR1,C6orf97	CCDC170			80129			rs3757318-A	rs3757318	0	3757318	intron	0	0.07	3E-6	5.522878745280337		   1.30	[1.17-1.46] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	3p24.1	3	27374522	SLC4A7	SLC4A7			9497			rs4973768-T	rs4973768	0	4973768	UTR-3	0	0.47	6E-7	6.221848749616355		   1.16	[1.10-1.24] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	9p21.3	9	22062135	CDKN2A,CDKN2B	CDKN2B-AS1;LOC102724137			100048912;102724137			rs1011970-T	rs1011970	0	1011970	intron;intron	0	0.17	3E-8	7.522878745280337		   1.09	[1.04-1.14] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	10p15.1	10	5844771	ANKRD16,FBXO18	NRBF2P5 - TRNAV26	100118954	100189342		       66.00	        8.94	rs2380205-C	rs2380205	0	2380205	Intergenic	1	0.57	5E-7	6.30102999566398		   1.06	[1.02-1.10] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	10q21.2	10	62518923	ZNF365	ZNF365			22891			rs10995190-G	rs10995190	0	10995190	intron	0	0.85	5E-15	14.30102999566398		   1.16	[1.10-1.22] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	10q22.3	10	79081391	ZMIZ1	ZMIZ1			57178			rs704010-A	rs704010	0	704010	intron	0	0.39	4E-9	8.397940008672036		   1.07	[1.03-1.11] 	Illumina [582,886]	N
06/02/2010	20453838	Turnbull C	05/09/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20453838	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	11q13.3	11	69513996	MYEOV,CCND1,ORAOV1,FGF19,FGF4,FGF3	IFITM9P - CCND1	390218	595		      210.19	      127.11	rs614367-T	rs614367	0	614367	Intergenic	1	0.15	3E-15	14.52287874528034		   1.15	[1.10-1.20] 	Illumina [582,886]	N
06/08/2010	20452100	Kramer PL	05/06/2010	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/20452100	Alzheimer disease pathology in cognitively healthy elderly: a genome-wide study.	Alzheimer's disease	185 European ancestry low NFT individuals, 114 European ancestry high NFT individuals	NA	7q22.1	7	103985430	RELN	RELN			5649			rs4298437-A	rs4298437	0	4298437	intron	0	0.26	2E-6	5.698970004336018		NR	NR	Illumina [292,175]	N
06/08/2010	20452100	Kramer PL	05/06/2010	Neurobiol Aging	http://www.ncbi.nlm.nih.gov/pubmed/20452100	Alzheimer disease pathology in cognitively healthy elderly: a genome-wide study.	Alzheimer's disease	185 European ancestry low NFT individuals, 114 European ancestry high NFT individuals	NA	8p23.1	8	10477271	MSRA	LOC101929191			101929191			rs11782819-?	rs11782819	0	11782819	ncRNA	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [292,175]	N
06/02/2010	20451256	Djurovic S	05/05/2010	J Affect Disord	http://www.ncbi.nlm.nih.gov/pubmed/20451256	A genome-wide association study of bipolar disorder in Norwegian individuals, followed by replication in Icelandic sample.	Bipolar disorder	194 European ancestry bipolar cases, 230 European ancestry schizophrenic cases, 336 European ancestry controls	435 European ancestry bipolar cases, 10,258 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [up to 620,390]	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	15q22.31	15	63445726	USP3	CA12 - USP3	771	9960		       63.85	       58.79	rs10519210-?	rs10519210	0	10519210	Intergenic	1	0.03	1E-8	8	(EA)	   1.53	[1.05-2.24] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12q14.1	12	58865846	LRIG3	RPL21P103 - LRIG3	100271433	121227		      620.94	        6.31	rs11172782-?	rs11172782	0	11172782	Intergenic	1	0.29	7E-8	7.154901959985742	(AA)	   1.46	[1.03-2.09] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	1q41	1	220855166	LOC100129376	HLX-AS1			100873924			rs11118620-?	rs11118620	0	11118620	intron	0	0.29	7E-6	5.154901959985742	(EA)	   1.15	[0.98-1.35] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	3q26.1	3	165562421	BCHE	SLITRK3 - BCHE	22865	590		      365.74	      210.48	rs1523288-?	rs1523288	0	1523288	Intergenic	1	0.65	6E-6	5.221848749616356	(EA)	   1.15	[0.98-1.35] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	7p15.2	7	27290437	EVX1	RPL35P4 - EIF4HP1	100271006	401316		       20.68	      165.94	rs13225783-?	rs13225783	0	13225783	Intergenic	1	0.05	7E-6	5.154901959985742	(EA)	   1.38	[0.96-1.99] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	8q21.13	8	82756885	SNX16	HNRNPA1P4 - RALYL	389674	138046		      464.49	     1426.33	rs6473383-?	rs6473383	0	6473383	Intergenic	1	0.15	3E-6	5.522878745280337	(EA)	   1.19	[0.99-1.44] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	9p21.2	9	27533986	MOBKL2B	IFNK - C9orf72	56832	203228		        7.49	       12.56	rs10812610-?	rs10812610	0	10812610	Intergenic	1	0.50	5E-6	5.301029995663981	(EA)	   1.14	[0.99-1.31] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	10q23.31	10	89204857	CH25H	MIR4679-1 - CH25H	100616128	9023		      141.45	        1.08	rs11203032-?	rs11203032	0	11203032	Intergenic	1	0.10	8E-6	5.096910013008055	(EA)	   1.22	[0.97-1.53] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12q12	12	42859612	PRICKLE1	RPS27P21 - MRPS36P5	100131905	347703		      180.45	      194.47	rs1520832-?	rs1520832	0	1520832	Intergenic	1	0.04	1E-6	5.999999999999999	(EA)	   1.39	[0.99-1.95] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	13q22.2	13	75202132	TBC1D4	SSR1P2 - CTAGE11P	100131189	647288		       65.20	       35.62	rs548097-?	rs548097	0	548097	Intergenic	1	0.02	6E-7	6.221848749616355	(EA)	   1.62	[1.00-2.63] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	19p13.3	19	3159771	GNA15	GNA15			2769			rs11880198-?	rs11880198	0	11880198	intron	0	0.13	6E-6	5.221848749616356	(EA)	   1.23	[0.98-1.54] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	2q14.3	2	126905321	LOC339760	GYPC - BIN1	2995	274		      208.65	      142.70	rs13418717-?	rs13418717	0	13418717	Intergenic	1	0.20	3E-6	5.522878745280337	(AA)	   1.46	[0.97-2.20] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	9p22.2	9	18109237	SH3GL2	PABPC1P11 - PUS7P1	100421058	100421790		      518.54	       44.33	rs2210327-?	rs2210327	0	2210327	Intergenic	1	0.19	7E-7	6.154901959985743	(AA)	   3.14	[0.99-10.00] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	11q24.2	11	126158822	RPUSD4	NAP1L1P1 - RPUSD4	729561	84881		       90.22	       43.27	rs563519-?	rs563519	0	563519	Intergenic	1	0.66	3E-6	5.522878745280337	(AA)	   1.45	[0.97-2.17] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12p11.22	12	29951209	TMTC1	RPL21P99 - RNA5SP356	100271429	100873615		      292.37	      355.22	rs2046383-?	rs2046383	0	2046383	Intergenic	1	0.30	3E-6	5.522878745280337	(AA)	   1.39	[0.97-1.97] 	Affymetrix & Illumina [2,478,304] (imputed)	N
06/02/2010	20445134	Smith NL	05/05/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20445134	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12q21.33	12	91911494	BTG1	DCN - C12orf79	1634	256021		      728.47	       73.48	rs17019682-?	rs17019682	0	17019682	Intergenic	1	0.17	2E-6	5.698970004336018	(AA)	   1.47	[0.98-2.22] 	Affymetrix & Illumina [2,478,304] (imputed)	N
05/31/2010	20436471	Albagha OM	05/02/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20436471	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	10p13	10	13113726	OPTN	OPTN			10133			rs1561570-?	rs1561570	0	1561570	intron	0	0.55	6E-13	12.22184874961636		   1.54	[1.37-1.72] 	Illumina [294,663]	N
05/31/2010	20436471	Albagha OM	05/02/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20436471	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	18q21.33	18	62393502	TNFRSF11A	TNFRSF11A - RPL17P44	8792	100129584		        5.79	       22.14	rs2957128-A	rs2957128	0	2957128	Intergenic	1	0.38	2E-11	10.69897000433602		   1.46	[1.30-1.63] 	Illumina [294,663]	N
05/31/2010	20436471	Albagha OM	05/02/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20436471	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	1p13.3	1	109823461	CSF1	EPS8L3 - CSF1	79574	1435		       59.44	       87.15	rs484959-?	rs484959	0	484959	Intergenic	1	0.51	5E-24	23.30102999566398		   1.82	[1.61-2.04] 	Illumina [294,663]	N
05/31/2010	20436471	Albagha OM	05/02/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20436471	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	18q21.33	18	62414860	TNFRSF11A	TNFRSF11A - RPL17P44	8792	100129584		       27.15	         .78	rs3018362-A	rs3018362	0	3018362	Intergenic	1	0.34	5E-13	12.30102999566398		   1.52	[1.36-1.70] 	Illumina [294,663]	N
05/26/2010	20436469	Beaty TH	05/02/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20436469	A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4.	Cleft lip	825 European ancestry trios, 1,038 Asian ancestry trios	2,194 Asian ancestry family members, 322 South Asian ancestry family members, 3,830 European ancestry family members, 1,769 South and Central American ancestry family members	8q24.21	8	128933908	Intergenic	LINC01263 - LINC00977	101927774	728724		      505.99	      282.56	rs987525-A	rs987525	0	987525	Intergenic	1	0.17	4E-16	15.39794000867204		   1.78	[1.55-2.05] 	Illumina [589,945]	N
05/26/2010	20436469	Beaty TH	05/02/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20436469	A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4.	Cleft lip	825 European ancestry trios, 1,038 Asian ancestry trios	2,194 Asian ancestry family members, 322 South Asian ancestry family members, 3,830 European ancestry family members, 1,769 South and Central American ancestry family members	1q32.2	1	209814702	IRF6	IRF6 - DIEXF	3664	27042		        8.53	       13.27	rs10863790-?	rs10863790	0	10863790	Intergenic	1	0.80	1E-14	14		   1.72	[1.49-1.98] 	Illumina [589,945]	N
05/26/2010	20442857	Suchindran S	04/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20442857	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	19q13.32	19	44919689	APOC1	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.16	6E-24	23.22184874961635	(activity)	   8.00	[NR] nmol/ml/min increase	Affymetrix [360,811]	N
05/26/2010	20442857	Suchindran S	04/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20442857	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	1p13.3	1	109279544	PSRC1	PSRC1			84722			rs599839-G	rs599839	0	599839	nearGene-3	0	0.22	3E-15	14.52287874528034	(activity)	   5.50	[NR] nmol/ml/min decrease	Affymetrix [360,811]	N
05/26/2010	20442857	Suchindran S	04/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20442857	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	12q24.31	12	124827879	SCARB1	SCARB1			949			rs10846744-C	rs10846744	0	10846744	intron	0	0.15	1E-8	8	(activity)	   4.60	[NR] nmol/ml/min increase	Affymetrix [360,811]	N
05/26/2010	20442857	Suchindran S	04/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20442857	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	11q23.3	11	116781491	ZNF259	ZPR1			8882			rs12286037-T	rs12286037	0	12286037	intron	0	0.07	4E-8	7.397940008672037	(activity)	   6.40	[NR] nmol/ml/min increase	Affymetrix [360,811]	N
05/26/2010	20442857	Suchindran S	04/29/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20442857	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	6p12.3	6	46716485	PLA2G7	PLA2G7			7941			rs1805017-T	rs1805017	0	1805017	missense	0	0.26	6E-14	13.22184874961636	(mass)	  11.10	[NR] ng/mL increase	Affymetrix [360,811]	N
05/26/2010	20421487	Hodgkinson CA	04/26/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20421487	Genome-wide association identifies candidate genes that influence the human electroencephalogram.	Electroencephalogram traits	322 Plains American Indian ancestry individuals	185 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [405,281]	N
05/25/2010	20421499	Levy D	04/26/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20421499	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	19p12	19	22332449	ZNF676	ZNF729 - RPL34P34	100287226	342994		       15.27	       36.14	rs1975174-T	rs1975174	0	1975174	Intergenic	1	NR	2E-6	5.698970004336018		    .05	[0.03-0.07] kb increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/25/2010	20421499	Levy D	04/26/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20421499	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	6p21.33	6	31876147	SLC44A4	SLC44A4			80736			rs2736428-T	rs2736428	0	2736428	intron	0	NR	3E-6	5.522878745280337		    .05	[0.03-0.07] kb increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/25/2010	20421499	Levy D	04/26/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20421499	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	10q24.33	10	103918139	OBFC1	OBFC1			79991			rs4387287-A	rs4387287	0	4387287	UTR-5	0	NR	2E-11	10.69897000433602		    .10	[0.06-0.14] kb increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/25/2010	20421499	Levy D	04/26/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20421499	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	2q22.1	2	136258421	CXCR4	HNRNPKP2 - UBBP1	389053	7315		       57.92	       70.88	rs4452212-A	rs4452212	0	4452212	Intergenic	1	NR	2E-6	5.698970004336018		    .05	[0.03-0.07] kb decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/24/2010	20418889	Liu JZ	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418889	Meta-analysis and imputation refines the association of 15q25 with smoking quantity.	Smoking behavior	41,150 European descent individuals	120,516 European descent individuals	15q25.1	15	78601997	CHRNA5,CHRNA3	CHRNA3			1136			rs1051730-G	rs1051730	0	1051730	STOP-GAIN	0	0.66	2E-66	65.698970004336		    .08	[0.07-0.09] unit decrease	Affymetrix & Illumina [NR] (imputed)	N
05/24/2010	20418890	The Tobacco and Genetics Consortium	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418890	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	15q25.1	15	78601997	CHRNA3	CHRNA3			1136			rs1051730-G	rs1051730	0	1051730	STOP-GAIN	0	0.65	3E-73	72.52287874528032	(CPD)	   1.02	[0.91-1.13] CPD decrease	Affymetrix, Illumina and Perlegen [~2.5 million] (imputed)	N
05/24/2010	20418890	The Tobacco and Genetics Consortium	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418890	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	10q23.32	10	91588363	LOC100188947	LOC100188947			100188947			rs1329650-T	rs1329650	0	1329650	intron	0	0.28	6E-10	9.221848749616356	(CPD)	    .37	[0.25-0.49] CPD decrease	Affymetrix, Illumina and Perlegen [~2.5 million] (imputed)	N
05/24/2010	20418890	The Tobacco and Genetics Consortium	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418890	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	19q13.2	19	40804666	CYP2A6,EGLN2	EGLN2;RAB4B-EGLN2			112398;100529264			rs3733829-G	rs3733829	0	3733829	intron;intron	0	0.36	1E-8	8	(CPD)	    .33	[0.22-0.44] CPD increase	Affymetrix, Illumina and Perlegen [~2.5 million] (imputed)	N
05/24/2010	20418890	The Tobacco and Genetics Consortium	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418890	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	11p14.1	11	27658369	BDNF	BDNF;BDNF-AS			627;497258			rs6265-C	rs6265	0	6265	missense;ncRNA	0	0.79	2E-8	7.698970004336018	(smoking initiation)	   1.06	[1.04-1.08] 	Affymetrix, Illumina and Perlegen [~2.5 million] (imputed)	N
05/24/2010	20418890	The Tobacco and Genetics Consortium	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418890	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	9q34.2	9	133613233	DBH	FAM163B - DBH	642968	1621		        3.88	       23.13	rs3025343-G	rs3025343	0	3025343	Intergenic	1	0.84	4E-8	7.397940008672037	(smoking cessation)	   1.12	[1.08-1.18] 	Affymetrix, Illumina and Perlegen [~2.5 million] (imputed)	N
05/24/2010	20418888	Thorgeirsson TE	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418888	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	15q25.1	15	78601997	NR	CHRNA3			1136			rs1051730-A	rs1051730	0	1051730	STOP-GAIN	0	0.34	2E-69	68.698970004336		    .80	[0.70-0.90] CPD increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/24/2010	20418888	Thorgeirsson TE	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418888	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	8p11.21	8	42695355	CHRNB3,CHRNA6	SMIM19 - CHRNB3	114926	1142		      142.36	        2.06	rs6474412-T	rs6474412	0	6474412	Intergenic	1	0.78	1E-8	8		    .29	[0.19-0.39] CPD increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/24/2010	20418888	Thorgeirsson TE	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418888	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	7p14.3	7	32307723	Intergenic	SNX2P2 - SLC25A5P5	100873785	442525		      366.14	      163.71	rs215614-G	rs215614	0	215614	Intergenic	1	0.36	2E-7	6.698970004336019		    .22	[0.14-0.30] CPD increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/24/2010	20418888	Thorgeirsson TE	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418888	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	19q13.2	19	40852719	CYP2A6,RAB4D	CYP2A6 - CYP2A7	1548	1549		        2.27	       22.72	rs4105144-C	rs4105144	0	4105144	Intergenic	1	0.70	2E-12	11.69897000433602		    .39	[0.27-0.51] CPD increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/24/2010	20418888	Thorgeirsson TE	04/25/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418888	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	19q13.2	19	41015733	CYP2B6	CYP2B6			1555			rs7260329-G	rs7260329	0	7260329	intron	0	0.69	6E-6	5.221848749616356		    .20	[0.12-0.28] CPD increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/23/2010	20418485	Ahn J	04/23/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418485	Genome-wide association study of circulating vitamin D levels.	Vitamin D levels	4,501 European ancestry individuals	2,221 European ancestry individuals	4q13.3	4	71742666	GC	GC			2638			rs2282679-C	rs2282679	0	2282679	intron	0	0.26	2E-49	48.69897000433601		    .38	[0.32-0.44] unit decrease	Affymetrix & Illumina [593,253] (imputed)	N
05/23/2010	20418485	Ahn J	04/23/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418485	Genome-wide association study of circulating vitamin D levels.	Vitamin D levels	4,501 European ancestry individuals	2,221 European ancestry individuals	11q13.4[rs3829251]; 11q13.4[rs11234027]			NADSYN1,DHCR7	 - 						rs3829251-A	rs3829251,rs11234027					0.19	3E-9			    .18	[0.12-0.24] unit decrease	Affymetrix & Illumina [593,253] (imputed)	N
05/23/2010	20418485	Ahn J	04/23/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418485	Genome-wide association study of circulating vitamin D levels.	Vitamin D levels	4,501 European ancestry individuals	2,221 European ancestry individuals	11p15.2[rs2060793]; 11p15.2[rs1993116]			CYP2R1	 - 						rs2060793-A	rs2060793,rs1993116					0.41	3E-17			    .25	[0.15-0.35] unit increase	Affymetrix & Illumina [593,253] (imputed)	N
05/23/2010	20418489	Qi L	04/23/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20418489	Genetic variants at 2q24 are associated with susceptibility to type 2 diabetes.	Type 2 diabetes	2,591 European ancestry cases, 3,052 European ancestry controls	10,870 European ancestry cases, 73,735 European ancestry controls	2q24.2	2	160314943	RBMS1,  ITGB6	RBMS1			5937			rs7593730-?	rs7593730	0	7593730	intron	0	0.78	4E-8	7.397940008672037		   1.11	[1.08-1.16] 	Affymetrix [683,509]	N
06/26/2014	20421936	Scherag A	04/22/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20421936	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	16q12.2	16	53769662	FTO	FTO			79068			rs1558902-A	rs1558902	0	1558902	intron	0	NR	5E-19	18.30102999566398		   1.37	[1.26-1.50] 	Affymetrix and Illumina [1,596,878] (imputed)	N
06/26/2014	20421936	Scherag A	04/22/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20421936	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	18q21.32[rs17700144]; 18q21.32[rs10871777]			MC4R	 - 						rs17700144-A	rs17700144, rs10871777					NR	6E-11			   1.22	[1.09-1.37] 	Affymetrix and Illumina [1,596,878] (imputed)	N
06/26/2014	20421936	Scherag A	04/22/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20421936	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	1q43	1	243320452	SDCCAG8	SDCCAG8			10806			rs12145833-T	rs12145833	0	12145833	intron	0	NR	5E-7	6.30102999566398		   1.19	[1.05-1.37] 	Affymetrix and Illumina [1,596,878] (imputed)	N
06/26/2014	20421936	Scherag A	04/22/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20421936	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	2p25.3	2	632028	TMEM18	FAM150B - TMEM18	285016	129787		      343.16	       35.95	rs11127485-T	rs11127485	0	11127485	Intergenic	1	NR	2E-7	6.698970004336019		   1.23	[1.08-1.41] 	Affymetrix and Illumina [1,596,878] (imputed)	N
06/26/2014	20421936	Scherag A	04/22/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20421936	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	8p23.1[rs17150703]; 8p23.1[rs473034]			TNKS, MSRA	 - 						rs17150703-A	rs17150703, rs473034					NR	2E-8			   1.18	[1.03-1.35] 	Affymetrix and Illumina [1,596,878] (imputed)	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	1p36.23	1	8466082	RERE	RERE			473			rs4908760-G	rs4908760	0	4908760	intron	0	0.37	7E-15	14.15490195998574		   1.36	[1.26-1.48] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-A	rs2476601	0	2476601	missense;intron	0	0.095	1E-7	7		   1.39	[1.23-1.57] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p22.1	6	29974306	HLA-A, HCG9	HCG9			10255			rs3823355-T	rs3823355	0	3823355	nearGene-5	0	0.29	9E-23	22.04575749056067		   1.50	[1.39-1.63] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	6p21.32	6	32405921	BTNL2, HLA-DRA, HLA-DQA1	BTNL2;LOC101929163			56244;101929163;102725030			rs3806156-T	rs3806156	0	3806156	intron;intron;intron	0	0.37	7E-19	18.15490195998574		   1.42	[1.32-1.54] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	10p15.1	10	6056861	IL2RA, RBM17, PFKB3	IL2RA			3559			rs706779-A	rs706779	0	706779	intron	0	0.535	3E-9	8.522878745280337		   1.27	[1.17-1.37] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	11q14.3	11	89277878	TYR	TYR			7299			rs1393350-G	rs1393350	0	1393350	intron	0	0.733	2E-18	17.69897000433602		   1.53	[1.39-1.68] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	14q12	14	24632954	GZMB	GZMB			3002			rs8192917-G	rs8192917	0	8192917	missense	0	0.236	3E-8	7.522878745280337		   1.28	[1.17-1.39] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	21q22.3	21	42416077	UBASH3A	UBASH3A			53347			rs11203203-A	rs11203203	0	11203203	intron	0	0.373	1E-9	8.999999999999998		   1.27	[1.18-1.38] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	22q12.3	22	37185445	C1QTNF6	C1QTNF6			114904			rs229527-T	rs229527	0	229527	missense	0	0.419	2E-16	15.69897000433602		   1.38	[1.28-1.50] 	Illumina [520,460]	N
05/18/2010	20410501	Jin Y	04/21/2010	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20410501	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	3q28	3	188394766	LPP	LPP			4026			rs1464510-T	rs1464510	0	1464510	intron	0	0.44	1E-11	11		   1.31	[1.21-1.41] 	Illumina [520,460]	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	3p22.3	3	32447042	CMTM7	CMTM7			112616			rs12638540-G	rs12638540	0	12638540	intron	0	0.043	3E-7	6.522878745280337	(EA)	   1.53	[1.01-2.31] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	19p13.12	19	14240762	LPHN1	LPHN1 - CD97	22859	976		       34.58	      139.83	rs4528684-T	rs4528684	0	4528684	Intergenic	1	0.094	1E-6	5.999999999999999	(EA)	   1.42	[0.99-2.03] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	15q13.3	15	31537504	OTUD7A	OTUD7A			161725			rs2125623-C	rs2125623	0	2125623	intron	0	0.71	1E-6	5.999999999999999	(EA)	   1.23	[0.99-1.54] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	12q24.33	12	131378358	LOC338797	RPS6P20 - RPS6P21	100271262	100271263		       85.18	      289.12	rs7965445-A	rs7965445	0	7965445	Intergenic	1	0.098	2E-6	5.698970004336018	(EA)	   1.30	[0.99-1.72] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	4q34.2	4	175937875	GPM6A	GPM6A			2823			rs7687921-T	rs7687921	0	7687921	intron	0	0.039	4E-6	5.397940008672037	(EA)	   1.77	[0.95-3.28] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	11p15.3	11	12447850	PARVA	PARVA			55742			rs7120489-A	rs7120489	0	7120489	intron	0	0.069	7E-6	5.154901959985742	(EA)	   1.35	[0.96-1.90] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	10q22.3	10	77684995	KCNMA1	RNA5SP321 - RBBP6P1	100873587	100129156		       97.84	       53.23	rs4979906-G	rs4979906	0	4979906	Intergenic	1	0.186	7E-6	5.154901959985742	(EA)	   1.23	[0.98-1.55] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	7q31.1	7	112446278	IFRD1	IFRD1			3475			rs17159640-T	rs17159640	0	17159640	intron	0	0.048	9E-6	5.045757490560675	(EA)	   1.59	[0.94-2.68] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	5p13.3	5	33636489	ADAMTS12	ADAMTS12			81792			rs6868223-A	rs6868223	0	6868223	intron	0	0.338	2E-6	5.698970004336018	(AA)	   1.58	[0.98-2.56] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	1q41	1	221378197	LOC400804	C1orf140 - DUSP10	400804	11221		       41.90	      323.23	rs12733856-A	rs12733856	0	12733856	Intergenic	1	0.382	3E-6	5.522878745280337	(AA)	   1.56	[0.97-2.51] 	Affymetrix [up to 2,366,858] (imputed)	N
05/23/2010	20400778	Morrison AC	04/17/2010	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400778	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	14q32.11	14	90213566	KCNK13	GLRXP2 - PSMC1	171418	5700		      104.26	       42.98	rs8017423-T	rs8017423	0	8017423	Intergenic	1	0.62	7E-6	5.154901959985742	(AA)	   1.64	[0.94-2.78] 	Affymetrix [up to 2,366,858] (imputed)	N
05/12/2010	20400458	Kang SJ	04/16/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20400458	Genome-wide association of anthropometric traits in African- and African-derived populations.	Anthropometric traits	743 African American individuals, 1,188 Nigerian ancestry individuals	704 African American individuals from 306 families, 3,471 African American and Afro-Caribbean individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [up to 2.9 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	3p25.1	3	16354161	RFTN1	RFTN1			23180			rs690037-C	rs690037	0	690037	intron	0	NR	2E-7	6.698970004336019		    .21	[0.12-0.29] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	10	68252081	ATOH7	ATOH7 - KRT19P4	220202	100128041		       19.97	        8.24	rs3858145-A	rs3858145	0	3858145	Intergenic	1	NR	2E-7	6.698970004336019		    .21	[0.11-0.30] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	4q12	4	52890833	SCFD2	SCFD2			152579			rs2898681-G	rs2898681	0	2898681	intron	0	NR	2E-6	5.698970004336018		    .17	[0.069-0.277] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	7q34	7	140531330	DENND2A	DENND2A			27147			rs10237118-C	rs10237118	0	10237118	intron	0	NR	4E-6	5.397940008672037		    .31	[0.15-0.47] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	11q13.4	11	72539079	PDE2A	ART2P - PDE2A	418	5138		       17.44	       37.06	rs12418204-G	rs12418204	0	12418204	Intergenic	1	NR	5E-6	5.301029995663981		    .31	[0.11-0.50] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	12q21.33	12	90049705	LOC643153	MRPL2P1 - LINC00615	347894	439916		      295.85	      868.32	rs10858945-A	rs10858945	0	10858945	Intergenic	1	NR	6E-6	5.221848749616356		    .17	[0.087-0.255] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	1q41	1	216885137	ESRRG	ESRRG			2104			rs1436900-T	rs1436900	0	1436900	intron	0	NR	7E-6	5.154901959985742		    .14	[0.058-0.226] unit decrease	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	5q33.1	5	152354548	NMUR2	CTB-12O2.1 - NMUR2	101927115	56923		       84.10	       36.99	rs1010254-C	rs1010254	0	1010254	Intergenic	1	NR	8E-6	5.096910013008055		    .18	[0.084-0.280] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	8p23.1			LOC401447	 - 						rs9692809-C	rs9692809					NR	8E-6			    .09	[-0.14708-0.33508] unit decrease	Illumina [~2.74 million] (imputed)	N
07/09/2014	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	3p25.1	3	16354161	RFTN1	RFTN1			23180			rs690037-C	rs690037	0	690037	intron	0	NR	6E-7	6.221848749616355		    .20	[0.11-0.28] unit increase	Illumina [~2.74 million] (imputed)	N
07/09/2014	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	4q22.3	4	95537282	UNC5C	UNC5C			8633			rs10032931-C	rs10032931	0	10032931	intron	0	NR	4E-6	5.397940008672037		    .20	[0.10-0.29] unit decrease	Illumina [~2.74 million] (imputed)	N
07/09/2014	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	NR			LOC401447	 - 						rs9692809-C	rs9692809					NR	6E-6			    .13	[-0.11704-0.36904] unit decrease	Illumina [~2.74 million] (imputed)	N
07/09/2014	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	12q21.33	12	90050265	LOC643153	MRPL2P1 - LINC00615	347894	439916		      296.41	      867.76	rs10858945-A	rs10858946	0	10858946	Intergenic	1	NR	6E-6	5.221848749616356		    .18	[0.093-0.265] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	10	68259614	PBLD	ATOH7 - KRT19P4	220202	100128041		       27.50	         .70	rs12571093-G	rs12571093	0	12571093	Intergenic	1	NR	2E-10	9.698970004336017		    .31	[0.21-0.42] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	10	68252081	ATOH7	ATOH7 - KRT19P4	220202	100128041		       19.97	        8.24	rs3858145-A	rs3858145	0	3858145	Intergenic	1	NR	3E-10	9.522878745280336		    .30	[0.20-0.39] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	10	68207690	MYPN	MYPN			84665			rs6480314-A	rs6480314	0	6480314	intron	0	NR	2E-7	6.698970004336019		    .24	[0.14-0.35] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	1p22.1	1	91611540	HSP90B3P	RPL39P13 - HSP90B3P	100130802	343477		       11.04	       30.98	rs1192415-A	rs1192415	0	1192415	Intergenic	1	NR	3E-7	6.522878745280337		    .25	[0.14-0.35] unit decrease	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	2q22.1	2	140604489	LRP1B	LRP1B			53353			rs491391-A	rs491391	0	491391	intron	0	NR	3E-7	6.522878745280337		    .41	[0.22-0.59] unit decrease	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	Xp11.23	23	47314877	ZNF157	NICN2P - ZNF157	171176	7712		       40.32	       55.72	rs6611365-G	rs6611365	0	6611365	Intergenic	1	NR	4E-7	6.397940008672037		    .18	[0.096-0.260] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	14q32.2	14	100785652	MEG3	DLK1 - MIR2392	8788	100616495		       50.52	       28.84	rs1884537-C	rs1884537	0	1884537	Intergenic	1	NR	2E-6	5.698970004336018		    .13	[0.052-0.216] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	6q21	6	114270822	hCG_1820801	RNA5SP213 - DNAJA1P4	100873473	728614		       50.04	       78.66	rs9488363-G	rs9488363	0	9488363	Intergenic	1	NR	2E-6	5.698970004336018		    .15	[0.065-0.229] unit decrease	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	14q31.1	14	81056784	TSHR	TSHR			7253			rs17111394-T	rs17111394	0	17111394	intron	0	NR	4E-6	5.397940008672037		    .22	[0.11-0.32] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	1p36.22	1	10578547	PEX14	PEX14			5195			rs12741973-C	rs12741973	0	12741973	intron	0	NR	7E-6	5.154901959985742		    .17	[0.087-0.247] unit decrease	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	13q22.1	13	74156255	LOC730245	KLF12 - RNY1P5	11278	100862667		       21.99	      132.85	rs8000245-C	rs8000245	0	8000245	Intergenic	1	NR	8E-6	5.096910013008055		    .21	[0.090-0.334] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	14q23.1	14	60606157	SIX1	RPS15AP4 - SIX1	654371	6495		        3.61	       38.54	rs10483727-C	rs10483727	0	10483727	Intergenic	1	NR	9E-6	5.045757490560675		    .15	[0.063-0.239] unit increase	Illumina [~2.74 million] (imputed)	N
05/18/2010	20395239	Macgregor S	04/15/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20395239	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	22q12.3	22	36283012	MYH9	MYH9			4627			rs735854-C	rs735854	0	735854	intron	0	NR	9E-6	5.045757490560675		    .16	[0.072-0.240] unit decrease	Illumina [~2.74 million] (imputed)	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	6p21.33	6	31354782	HLA-B	HLA-B;MIR6891			3106;102465537			rs2523608-?	rs2523608	0	2523608	intron;nearGene-3	0	0.37	3E-6	5.522878745280337		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	20p12.3	20	5963047	MCM8	MCM8			84515			rs454422-?	rs454422	0	454422	intron	0	0.26	1E-6	5.999999999999999		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	7p14.2	7	36570887	AOAH	AOAH			313			rs6948404-?	rs6948404	0	6948404	intron	0	0.07	3E-6	5.522878745280337		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	19p13.2	19	7844997	EVI5L	EVI5L			115704			rs558718-?	rs558718	0	558718	intron	0	0.11	4E-6	5.397940008672037		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	11q14.1	11	81143332	Intergenic	ARL6IP1P3 - MIR4300	729790	100422823		      489.35	      747.41	rs1357339-?	rs1357339	0	1357339	Intergenic	1	0.04	5E-6	5.301029995663981		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	13q31.3	13	92561223	GPC5	GPC5			2262			rs1413191-?	rs1413191	0	1413191	intron	0	0.18	5E-6	5.301029995663981		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	3p24.3	3	22080904	AC023798.16	ZNF385D			79750			rs2593321-?	rs2593321	0	2593321	intron	0	0.23	8E-6	5.096910013008055		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	8p21.3	8	22543476	PPP3CC	SORBS3			10174			rs4872511-?	rs4872511	0	4872511	nearGene-5	0	0.01	9E-6	5.045757490560675		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	8p21.3	8	22547327	SORBS3	SORBS3			10174			rs2280890-?	rs2280890	0	2280890	intron	0	0.01	9E-6	5.045757490560675		NR	NR	Illumina [1,212,217]	N
05/10/2010	20205591	Pelak K	04/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20205591	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	6q22.31	6	120778991	RP11-100A16.1	RNA5SP215 - COX6A1P3	100873475	100287768		       92.25	        2.20	rs2789066-?	rs2789066	0	2789066	Intergenic	1	0.13	9E-6	5.045757490560675		NR	NR	Illumina [1,212,217]	N
05/07/2010	20386566	Lee MT	04/13/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20386566	Genome-wide association study of bipolar I disorder in the Han Chinese population.	Bipolar I disorder	1,000 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	409 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	7p21.1	7	20822683	SP8	SP8 - RPL23P8	221833	222901		       35.79	        4.62	rs2709736-G	rs2709736	0	2709736	Intergenic	1	NR	5E-7	6.30102999566398		   1.44	[1.25-1.66] 	Illumina [516,919]	N
05/07/2010	20386566	Lee MT	04/13/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20386566	Genome-wide association study of bipolar I disorder in the Han Chinese population.	Bipolar I disorder	1,000 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	409 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	15q26.1	15	92501109	ST8SIA2, C15orf32	C15orf32			145858			rs8040009-C	rs8040009	0	8040009	UTR-3	0	0.11	6E-6	5.221848749616356		   1.40	[1.21-1.61] 	Illumina [516,919]	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	22q12.3			TIMP3, SYN3	 - 						rs9621532-A	rs9621532					0.946	1E-11		(EA)	   1.41	[1.27-1.57] 	Illumina [~2.5 million] (imputed)	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	1q31.3	1	196710325	CFH	CFH			3075			rs10737680-A	rs10737680	0	10737680	intron	0	0.566	2E-76	75.69897000433602		   3.11	[2.76-3.51] 	Illumina [~2.5 million] (imputed)	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	10q26.13	10	122459759	ARMS2, HTRA1	HTRA1			5654			rs3793917-G	rs3793917	0	3793917	nearGene-5	0	0.164	4E-60	59.39794000867203		   3.40	[2.94-3.94] 	Illumina [~2.5 million] (imputed)	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	6p21.33	6	31962685	C2, CFB	SKIV2L			6499			rs429608-G	rs429608	0	429608	intron	0	0.842	3E-21	20.52287874528034		   2.16	[1.84-2.53] 	Illumina [~2.5 million] (imputed)	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	19p13.3	19	6718376	C3	C3			718			rs2230199-C	rs2230199	0	2230199	missense	0	0.163	1E-10	10		   1.74	[1.47-2.06] 	Illumina [~2.5 million] (imputed)	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	4q25	4	109717654	CFI	PLA2G12A			81579			rs2285714-T	rs2285714	0	2285714	cds-synon	0	0.395	3E-7	6.522878745280337		   1.31	[1.18-1.45] 	Illumina [~2.5 million] (imputed)	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	1q31.3	1	196677046	CFH	CFH			3075			rs1329424-T	rs1329424	0	1329424	intron	0	0.351	6E-16	15.22184874961635		   1.88	[1.68-2.10] 	Illumina [~2.5 million] (imputed)	N
07/01/2014	20385819	Chen W	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385819	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 678 Japanese cases, 5,998 European ancestry controls, 336 Japanese controls	6p21.33	6	31938233	C2, CFB	C2;LOC102060414			717;102060414			rs9380272-A	rs9380272	0	9380272	intron;intron	0	0.012	2E-8	7.698970004336018		   4.31	[2.76-6.87] 	Illumina [~2.5 million] (imputed)	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	15q21.3	15	58386313	LIPC	LOC102724766			102724766			rs10468017-?	rs10468017	0	10468017	intron	0	0.70	1E-8	8		   1.22	[1.14-1.30] 	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	22q12.3			TIMP3	 - 						rs9621532-A	rs9621532					0.96	4E-9			   1.61	[1.37-1.89] 	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	15q21.3	15	58395681	Intergenic	LOC102724766			102724766			rs493258-C	rs493258	0	493258	intron	0	0.55	2E-8	7.698970004336018		   1.16	[1.10-1.22] 	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p24.3	6	7118757	RREB1	RREB1			6239			rs11755724-G	rs11755724	0	11755724	intron	0	0.64	1E-6	5.999999999999999		   1.15	[1.09-1.14] 	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	3q12.1	3	99677428	COL8A1	COL8A1			1295			rs13095226-C	rs13095226	0	13095226	intron	0	0.12	3E-6	5.522878745280337		   1.24	[1.13-1.35] 	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	1q31.3	1	196690107	CFH	CFH			3075			rs1061170-?	rs1061170	0	1061170	missense	0	NR	4E-117	116.397940008672		NR	NR	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	1q31.3	1	196727803	CFH	CFH			3075			rs1410996-?	rs1410996	0	1410996	intron	0	NR	2E-111	110.698970004336		NR	NR	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	4q25	4	109737911	CFI	PLA2G12A - CFI	81579	3426		        7.83	        2.78	rs10033900-?	rs10033900	0	10033900	Intergenic	1	NR	9E-9	8.045757490560675		NR	NR	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	6p21.33	6	31946403	CFB,C2	CFB			629			rs641153-?	rs641153	0	641153	missense	0	NR	2E-20	19.69897000433602		NR	NR	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	19p13.3	19	6718376	C3	C3			718			rs2230199-?	rs2230199	0	2230199	missense	0	NR	2E-8	7.698970004336018		NR	NR	Affymetrix [632,932]	N
05/06/2010	20385826	Neale BM	04/12/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20385826	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	10q26.13	10	122454932	ARMS2,HTRA1	ARMS2			387715			rs10490924-?	rs10490924	0	10490924	missense	0	NR	5E-119	118.301029995664		NR	NR	Affymetrix [632,932]	N
05/05/2010	20383145	Chambers JC	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383145	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	2p13.1	2	73673773	NAT8,NAT8B,ALMS1,DUSP11,TPRKB	ALMS1P			200420			rs10206899-G	rs10206899	0	10206899	intron	0	0.22	1E-15	15		   1.00	[0.7-1.2] % decrease	Affymetrix, Illumina and Perlegen [~2.6 Million] (imputed)	N
05/05/2010	20383145	Chambers JC	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383145	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	6q25.3	6	160260361	SLC22A2	SLC22A2			6582			rs3127573-G	rs3127573	0	3127573	nearGene-5	0	0.13	7E-10	9.154901959985741		   1.10	[0.8-1.4] % increase	Affymetrix, Illumina and Perlegen [~2.6 Million] (imputed)	N
05/05/2010	20383145	Chambers JC	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383145	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	17q23.2	17	61406405	TBX2	TBX2			6909			rs8068318-G	rs8068318	0	8068318	intron	0	0.27	3E-10	9.522878745280336		    .80	[0.6-1.0] % increase	Affymetrix, Illumina and Perlegen [~2.6 Million] (imputed)	N
05/05/2010	20383145	Chambers JC	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383145	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	19q13.11	19	32962753	SLC7A9	CEP89			84902			rs4805834-A	rs4805834	0	4805834	intron	0	0.13	5E-11	10.30102999566398		   1.00	[0.7-1.3] % decrease	Affymetrix, Illumina and Perlegen [~2.6 Million] (imputed)	N
05/05/2010	20383145	Chambers JC	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383145	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	4q21.1	4	76439278	SHROOM3	SHROOM3			57619			rs9992101-?	rs9992101	0	9992101	intron	0	NR	6E-9	8.221848749616356		NR	NR	Affymetrix, Illumina and Perlegen [~2.6 Million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	1p13.3	1	109457216	SYPL2,ATXN7L2,CYB561D1,PSMA5,AMIGO1,SORT1	PSMA5 - SYPL2	5686	284612		       30.73	        9.26	rs1933182-A	rs1933182	0	1933182	Intergenic	1	0.30	1E-7	7	(eGFRcrea)	    .01	[0.006-0.010] ml/min/1.73m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	1q21.3	1	150979001	ANXA9,FAM63A,PRUNE,BNIPL,LASS2,SETDB1	CERS2 - ANXA9	29956	8416		        4.00	        3.02	rs267734-C	rs267734	0	267734	Intergenic	1	0.20	1E-12	12	(eGFRcrea)	    .01	[0.004-0.016] ml/min/1.73m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	2p25.2	2	5767748	SOX11	SOX11 - LINC01105	6664	150622		       66.36	      164.94	rs16864170-C	rs16864170	0	16864170	Intergenic	1	0.05	2E-7	6.698970004336019	(CKD)	   1.30	[1.18-1.43] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	2p23.3	2	27508073	GCKR, IFT172, FNDC4	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.41	3E-14	13.52287874528034	(eGFRcrea)	    .01	[0.007-0.011] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	2p13.1	2	73641201	NAT8,NAT8B,ALMS1	NAT8			9027			rs13538-G	rs13538	0	13538	missense	0	0.23	5E-14	13.30102999566398	(eGFRcrea)	    .01	[0.005-0.013] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	3q23	3	142088295	TFDP2	TFDP2			7029			rs347685-C	rs347685	0	347685	intron	0	0.28	3E-11	10.52287874528034	(eGFRcrea)	   1.09	[0.007-0.011] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	5p13.1	5	39397030	DAB2,C9	DAB2			1601			rs11959928-A	rs11959928	0	11959928	intron	0	0.44	1E-7	7	(eGFRcrea)	    .01	[0.007-0.011] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	5q35.3	5	177390635	SLC34A1,GRK6,RGS14,LMAN2,PRR7,F12,PFN3	SLC34A1			6569			rs6420094-G	rs6420094	0	6420094	intron	0	0.34	1E-14	14	(eGFRcrea)	    .01	[0.007-0.015] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	6p21.1	6	43838872	VEGFA	TRNAI25			100189401			rs881858-G	rs881858	0	881858		0	0.28	9E-14	13.04575749056067	(eGFRcrea)	   1.08	[0.007-0.015] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	7q36.1	7	151710715	PRKAG2	PRKAG2			51422			rs7805747-A	rs7805747	0	7805747	intron	0	0.24	4E-12	11.39794000867204	(CKD)	   1.18	[1.12-1.25] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	9q21.11	9	68819791	PIP5K1B,FAM122A	PIP5K1B			8395			rs4744712-A	rs4744712	0	4744712	intron	0	0.39	8E-14	13.09691001300805	(eGFRcrea)	    .01	[0.008-0.016] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	11q13.1	11	65739351	RNASEH2C,KAT5,OVOL1	KRT8P26 - AP5B1	390211	91056		       11.34	       34.55	rs4014195-G	rs4014195	0	4014195	Intergenic	1	0.35	1E-7	7	(eGFRcrea)	    .01	[0.006-0.010] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	12q24.12	12	111569952	ATXN2	ATXN2			6311			rs653178-T	rs653178	0	653178	intron	0	0.50	4E-11	10.39794000867204	(eGFRcys)	    .01	[0.009-0.017] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	13q21.33	13	71773564	DACH1	DACH1			1602			rs626277-C	rs626277	0	626277	intron	0	0.40	3E-11	10.52287874528034	(eGFRcrea)	    .01	[0.007-0.011] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	15q24.2	15	75866642	UBE2Q2,FBX022	UBE2Q2			92912			rs1394125-A	rs1394125	0	1394125	intron	0	0.35	3E-17	16.52287874528034	(eGFRcrea)	    .01	[0.007-0.011] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	19q13.11	19	32865985	SLC7A9,CCDC123,ECAT8	SLC7A9			11136			rs12460876-C	rs12460876	0	12460876	intron	0	0.39	3E-15	14.52287874528034	(eGFRcrea)	    .01	[0.006-0.01] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	2q34	2	210675783	CPS1	CPS1			1373			rs7422339-A	rs7422339	1	1047891	missense	0	0.32	1E-15	15	(eGFRcrea)	    .01	[0.005-0.013] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	6q25.3	6	160247357	SLC22A2	SLC22A2			6582			rs2279463-G	rs2279463	0	2279463	intron	0	0.12	6E-12	11.22184874961635	(eGFRcrea)	    .01	[0.009-0.017] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	7q11.23	7	77787122	TMEM60,RSBN1L, PHTF2	RSBN1L - TMEM60	222194	85025		        7.32	        6.61	rs6465825-C	rs6465825	0	6465825	Intergenic	1	0.39	2E-9	8.698970004336019	(eGFRcrea)	    .01	[0.006-0.01] ml/min/1.73 m2 decrease]	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	10p15.3	10	1110225	WDR37	WDR37			22884			rs10794720-T	rs10794720	0	10794720	intron	0	0.08	1E-8	8	(eGFRcrea)	    .01	[0.010-0.018] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	12p13.33	12	240132	SLC6A13, JARID1A, SLC6A12	SLC6A13			6540			rs10774021-C	rs10774021	0	10774021	intron	0	0.36	1E-9	8.999999999999998	(eGFRcrea)	   1.05	[0.006-0.010] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	15q21.3	15	53654396	WDR72	WDR72			256764			rs491567-C	rs491567	0	491567	intron	0	0.22	3E-13	12.52287874528034	(eGFRcrea)	    .01	[0.005-0.013] ml/min/1.73 m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	17q23.2	17	61379228	BCAS3,TBX2,C17orf82	BCAS3			54828			rs9895661-C	rs9895661	0	9895661	intron	0	0.19	1E-15	15	(eGFRcrea)	    .01	[0.007-0.015] ml/min/1.73 m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	4q21.1	4	76447694	SHROOM3, CCDC158	SHROOM3			57619			rs17319721-A	rs17319721	0	17319721	intron	0	0.43	1E-19	19	(eGFRcrea)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	8p21.2	8	23893638	STC1	STC1 - ADAM28	6781	10863		       38.83	      400.40	rs10109414-T	rs10109414	0	10109414	Intergenic	1	0.42	1E-8	8	(eGFRcrea)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	15q21.1	15	45349027	GATM, SPATA5L1	SLC28A2 - GATM	9153	2628		       73.09	       12.10	rs2453533-?	rs2453533	0	2453533	Intergenic	1	0.38	5E-22	21.30102999566398	(eGFRcrea)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	16p12.3	16	20356368	UMOD,ACSM5,GP2,PDILT	UMOD - PDILT	7369	204474		        3.49	        2.80	rs12917707-T	rs12917707	0	12917707	Intergenic	1	0.18	1E-20	20	(eGFRcrea)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/05/2010	20383146	Kottgen A	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383146	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	20p11.21	20	23632100	CST3,CST4,CST9	CST3			1471			rs911119-?	rs911119	0	911119	intron	0	0.21	2E-138	137.698970004336	(eGFRcys)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/03/2010	20383147	Radstake TR	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383147	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	1q24.2	1	167451188	CD247	CD247			919			rs2056626-?	rs2056626	0	2056626	intron	0	0.59	3E-9	8.522878745280337		   1.16	[1.11-1.23] 	Illumina [279,621]	N
05/03/2010	20383147	Radstake TR	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383147	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	6p21.32	6	32696074	HLA-DQB1	TRNAI25			100189401			rs6457617-?	rs6457617	0	6457617		0	0.53	4E-17	16.39794000867203		   1.37	[1.28-1.47] 	Illumina [279,621]	N
05/03/2010	20383147	Radstake TR	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383147	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	7q32.1	7	128954129	TNPO, IRF5	TNPO3			23534			rs10488631-C	rs10488631	0	10488631	nearGene-3	0	NR	2E-13	12.69897000433602		   1.50	[1.35-1.67] 	Illumina [279,621]	N
05/03/2010	20383147	Radstake TR	04/11/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20383147	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	2q32.3	2	191038032	STAT4	STAT4			6775			rs3821236-A	rs3821236	0	3821236	intron	0	0.20	3E-9	8.522878745280337		   1.30	[1.19-1.41] 	Illumina [279,621]	N
04/27/2010	20372150	Freathy RM	04/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20372150	Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight.	Birth weight	10,623 European ancestry individuals	27,591 European ancestry individuals, 1,415 Filipino ancestry individuals, 746 North African ancestry individuals, 333 Turkish ancestry individuals	3q25.31	3	157080986	CCNL1, LEKR1	KLF3P2 - LINC00880	100124394	339894		      102.87	         .68	rs900400-C	rs900400	0	900400	Intergenic	1	NR	2E-35	34.69897000433602		    .09	[0.073-0.10] s.d. decrease	Affymetrix & Illumina [~2.4 million] (imputed)	N
04/27/2010	20372150	Freathy RM	04/06/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20372150	Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight.	Birth weight	10,623 European ancestry individuals	27,591 European ancestry individuals, 1,415 Filipino ancestry individuals, 746 North African ancestry individuals, 333 Turkish ancestry individuals	3q21.1	3	123377973	ADCY5	ADCY5			111			rs9883204-C	rs9883204	0	9883204	intron	0	NR	7E-15	14.15490195998574		    .06	[0.047-0.079] s.d. decrease	Affymetrix & Illumina [~2.4 million] (imputed)	N
04/27/2010	20370913	Ma L	04/06/2010	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/20370913	Genome-wide association analysis of total cholesterol and high-density lipoprotein cholesterol levels using the Framingham heart study data.	Cholesterol	6,078 individuals	1,231 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	NR [432,096]	N
05/10/2010	20364137	Yasuno K	04/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20364137	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	8q11.23	8	54398151	SOX17	RNU105C - SOX17	26766	64321		       67.26	       59.78	rs1504749-C	rs1504749	0	1504749	Intergenic	1	0.21	5E-7	6.30102999566398		   1.17	[1.10-1.24] 	Illumina [831,534] (imputed)	N
05/10/2010	20364137	Yasuno K	04/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20364137	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	8q11.23	8	54524964	SOX17	SEC11B - RP1	157708	6101		        1.58	       91.10	rs9298506-A	rs9298506	0	9298506	Intergenic	1	0.81	1E-12	12		   1.28	[1.20-1.38] 	Illumina [831,534] (imputed)	N
05/10/2010	20364137	Yasuno K	04/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20364137	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	9p21.3	9	22083405	CDKN2A,CDKN2B	CDKN2B-AS1			100048912			rs1333040-T	rs1333040	0	1333040	intron	0	0.56	2E-22	21.69897000433602		   1.32	[1.25-1.39] 	Illumina [831,534] (imputed)	N
05/10/2010	20364137	Yasuno K	04/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20364137	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	10q24.32	10	102959339	CNNM2	CNNM2			54805			rs12413409-G	rs12413409	0	12413409	intron	0	0.91	1E-9	8.999999999999998		   1.29	[1.19-1.40] 	Illumina [831,534] (imputed)	N
05/10/2010	20364137	Yasuno K	04/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20364137	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	13q13.1	13	33119700	STARD13	STARD13			90627			rs9315204-T	rs9315204	0	9315204	intron	0	0.21	3E-9	8.522878745280337		   1.20	[1.13-1.28] 	Illumina [831,534] (imputed)	N
05/10/2010	20364137	Yasuno K	04/04/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20364137	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	18q11.2	18	22643732	RBBP8	RPS4XP18 - UBE2CP2	646583	646595		       56.45	      256.75	rs11661542-C	rs11661542	0	11661542	Intergenic	1	0.49	1E-12	12		   1.22	[1.15-1.28] 	Illumina [831,534] (imputed)	N
05/03/2010	20363506	Meguro A	04/02/2010	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/20363506	Genome-wide association study of normal tension glaucoma: common variants in SRBD1 and ELOVL5 contribute to disease susceptibility.	Glaucoma	305 Japanese ancestry cases, 355 Japanese ancestry controls	NA	2p21	2	45419685	SRBD1	SRBD1			55133			rs3213787-A	rs3213787	0	3213787	intron	0	0.81	3E-9	8.522878745280337		   2.80	[1.96-3.99] 	Affymetrix [325,947]	N
05/03/2010	20363506	Meguro A	04/02/2010	Ophthalmology	http://www.ncbi.nlm.nih.gov/pubmed/20363506	Genome-wide association study of normal tension glaucoma: common variants in SRBD1 and ELOVL5 contribute to disease susceptibility.	Glaucoma	305 Japanese ancestry cases, 355 Japanese ancestry controls	NA	6p12.1	6	53258320	ELOVL5	TRNAI25			100189401			rs735860-C	rs735860	0	735860		0	0.48	4E-6	5.397940008672037		   1.69	[1.36-2.11] 	Affymetrix [325,947]	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Body mass index	11,536 European ancestry individuals	NA	6q22.33	6	129540247	LAMA2	LOC102723409			102723409			rs2275215-T	rs2275215	0	2275215	intron	0	0.73	4E-7	6.397940008672037		    .09	[0.05-0.13] SD decrease	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Body mass index	11,536 European ancestry individuals	NA	10p15.1	10	4613373	Intergenic	LINC00703 - LINC00704	100507059	100216001		      202.76	       36.81	rs10458787-G	rs10458787	0	10458787	Intergenic	1	0.76	1E-6	5.999999999999999		    .09	[0.04-0.14] SD increase	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	4q31.21	4	144653692	HHIP	HHIP			64399			rs1812175-C	rs1812175	0	1812175	intron	0	0.83	1E-9	8.999999999999998		    .12	[0.07-0.17] SD decrease	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	6q24.1	6	142358435	GPR126	GPR126			57211			rs6570507-G	rs6570507	0	6570507	intron	0	0.71	2E-7	6.698970004336019		    .08	[0.04-0.12] SD increase	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	12q14.3	12	65965972	HMGA2	HMGA2			8091			rs8756-A	rs8756	0	8756	UTR-3	0	0.51	4E-7	6.397940008672037		    .07	[0.03-0.11] SD decrease	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	15q25.2	15	83904289	ADAMTSL3	ADAMTSL3			57188			rs7183263-G	rs7183263	0	7183263	intron	0	0.52	4E-7	6.397940008672037		    .07	[0.03-0.11] SD increase	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	2p16.1	2	55884174	EFEMP1	EFEMP1			2202			rs3791675-C	rs3791675	0	3791675	intron	0	0.77	3E-7	6.522878745280337		    .09	[0.04-0.14] SD increase	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	4p15.31	4	18016107	LC0RL	LCORL			254251			rs6830062-T	rs6830062	0	6830062	intron	0	0.84	8E-6	5.096910013008055		    .09	[0.04-0.14] SD increase	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	6p21.31	6	34227234	HMGA1	TRNAI25			100189401			rs1776897-T	rs1776897	0	1776897		0	0.49	7E-6	5.154901959985742		    .11	[0.04-0.18] SD decrease	Illumina [559,712] (imputed)	N
05/11/2010	20397748	Liu JZ	04/01/2010	Twin Res Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20397748	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	15q25.2	15	83899406	SH3GL3,ADAMTSL3	ADAMTSL3			57188			rs10906982-A	rs10906982	0	10906982	intron	0	0.52	5E-7	6.30102999566398		    .07	[0.03-0.11] SD increase	Illumina [559,712] (imputed)	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	1p22.2	1	90410331	Intergenic	ZNF326 - BARHL2	284695	343472		      381.79	      301.69	rs2136093-?	rs2136093	0	2136093	Intergenic	1	0.31	4E-7	6.397940008672037	(whole sample)	   8.30	[NR] % worse outcome	Illumina [539,391]	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	10p12.31	10	20521596	Intergenic	AMD1P1 - MIR4675	100133024	100616383		      170.50	       30.37	rs16920624-?	rs16920624	0	16920624	Intergenic	1	0.07	7E-7	6.154901959985743	(whole sample)	  16.00	[NR] % worse outcome	Illumina [539,391]	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	19q13.42	19	55368504	IL11	IL11			3589			rs1126757-?	rs1126757	0	1126757	cds-synon	0	0.48	3E-6	5.522878745280337	(escitalopram)	  10.40	[NR] % better outcome	Illumina [539,391]	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	6q25.1	6	149008131	UST	UST			10090			rs2500535-A	rs2500535	0	2500535	intron	0	0.06	9E-6	5.045757490560675	(genotype x drug)	  29.70	[NR] % worse outcome	Illumina [539,391]	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	1q25.3	1	183867898	RGL1	RGL1			23179			rs4651156-?	rs4651156	0	4651156	intron	0	0.29	3E-6	5.522878745280337	(nortriptyline)	  12.60	[NR] % worse outcome	Illumina [539,391]	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	19p13.11	19	17479472	SLC27A1	SLC27A1			376497			rs11666579-?	rs11666579	0	11666579	intron	0	0.48	3E-6	5.522878745280337	(genotype x drug)	  14.40	[NR] % better outcome	Illumina [539,391]	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	18q12.1	18	33840046	Intergenic	ASXL3 - NOL4	80816	8715		       88.85	       11.05	rs1013696-?	rs1013696	0	1013696	Intergenic	1	0.22	4E-6	5.397940008672037	(genotype x drug)	  17.80	[NR] % worse outcome	Illumina [539,391]	N
05/03/2010	20360315	Uher R	04/01/2010	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20360315	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	6q25.1	6	149008131	UST	UST			10090			rs2500535-A	rs2500535	0	2500535	intron	0	0.06	4E-8	7.397940008672037	(nortriptyline)	  27.00	[NR] % worse outcome	Illumina [539,391]	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	12p13.33	12	2236129	CACNA1C	CACNA1C			775			rs1006737-A	rs1006737	0	1006737	intron	0	0.36	3E-8	7.522878745280337		   1.18	[NR] (bipolar)	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	2q31.1	2	175375121	Intergenic	RPS15AP14 - EXTL2P1	100127924	100287682		      190.47	      467.78	rs4972755-A	rs4972755	0	4972755	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	4q28.1	4	125438301	FAT4	FAT4			79633			rs1395241-G	rs1395241	0	1395241	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	6q25.2	6	152417619	SYNE1	SYNE1			23345			rs17082664-G	rs17082664	0	17082664	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	7q21.12	7	87192664	C7orf23,DMTF1	DMTF1			9988			rs11773103-G	rs11773103	0	11773103	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	13q14.3	13	50492487	Intergenic	DLEU1			10301			rs1262778-C	rs1262778	0	1262778	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	15q14	15	38694167	C15orf53	RASGRP1 - C15orf53	10125	400359		      129.36	        2.43	rs12912251-T	rs12912251	0	12912251	Intergenic	1	NR	1E-6	5.999999999999999		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	18p11.32	18	278796	COLEC12,THOC1	THOC1 - COLEC12	9984	81035		       10.74	       40.56	rs7226677-G	rs7226677	0	7226677	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
04/15/2010	20351715	Liu Y	03/30/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20351715	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder and major depressive disorder (combined)	4,387 European ancestry bipolar cases, 1,695 European ancestry major depressive disorder cases, 7,970 European ancestry controls	NA	10q21.2	10	60421370	ANK3	ANK3			288			rs10994338-A	rs10994338	0	10994338	intron	0	NR	5E-7	6.30102999566398		NR	NR	Affymetrix & Perlegen [1,472,580] (imputed)	N
11/03/2013	20350937	Takahashi M	03/29/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20350937	The FOXE1 locus is a major genetic determinant for radiation-related thyroid carcinoma in Chernobyl.	Thyroid cancer (Papillary, radiation-related)	401 European ancestry cases, 620 European ancestry controls, 	259 Other ancestry cases, 648 Other ancestry controls	9q22.33	9	97793827	FOXE1, TMOD1, C9orf97, NCBP1, XPA, KRT18P13, C9orf156, HEMGN	KRT18P13 - FOXE1	392371	2304		       93.03	       59.43	rs965513-A	rs965513	0	965513	Intergenic	1	NR	5E-12	11.30102999566398		   1.65	[1.43-1.91] 	Illumina [506,840]	N
04/14/2010	20348956	Kiemeney LA	03/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20348956	A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,889 European ancestry cases, 39,310 European ancestry controls	2,850 European ancestry cases, 6,239 European ancestry controls	4p16.3	4	1732512	TACC3,TMEM129,SLBP,FGFR3	TACC3			10460			rs798766-T	rs798766	0	798766	intron	0	0.19	1E-11	11		   1.24	[1.17-1.32] 	Illumina [304,703]	N
04/14/2010	20348956	Kiemeney LA	03/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20348956	A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,889 European ancestry cases, 39,310 European ancestry controls	2,850 European ancestry cases, 6,239 European ancestry controls	8q24.21	8	127705823	MYC	CASC8 - CASC11	727677	100270680		      223.68	       24.51	rs9642880-T	rs9642880	0	9642880	Intergenic	1	0.44	7E-12	11.15490195998574		   1.21	[1.15-1.28] 	Illumina [304,703]	N
04/14/2010	20348956	Kiemeney LA	03/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20348956	A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,889 European ancestry cases, 39,310 European ancestry controls	2,850 European ancestry cases, 6,239 European ancestry controls	3q28	3	189928144	TP63	MIR944 - LEPREL1	100126340	55214		       98.14	       28.58	rs710521-A	rs710521	0	710521	Intergenic	1	0.73	6E-8	7.221848749616355		   1.19	[1.12-1.27] 	Illumina [304,703]	N
04/13/2010	20360844	Arking DE	03/25/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20360844	Genome-wide association study identifies GPC5 as a novel genetic locus protective against sudden cardiac arrest.	Sudden cardiac arrest	424 European ancestry cases, 226 European ancestry controls	521 cases, 19090 controls of Black and European ancestry	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [1,966,233] (imputed)	N
04/12/2010	20332263	Azzato EM	03/23/2010	Cancer Epidemiol Biomarkers Prev	http://www.ncbi.nlm.nih.gov/pubmed/20332263	A genome-wide association study of prognosis in breast cancer.	Breast cancer (prognosis)	1,145 women	4,335 women	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [528,252]	N
10/18/2013	20308991	Kim S	03/23/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20308991	Integrative genome-wide association analysis of cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders.	Brain cytoarchitecture	14 European ancestry bipolar cases, 15 European ancestry depression cases, 13 European ancestry schizophrenia cases, 14 European ancestry controls	NA	5q22.2	5	113379677	MCC	MCC			4163			rs6594713-?	rs6594713	0	6594713	intron	0	0.21	2E-6	5.698970004336018		NR	NR	Affymetrix [309,531]	N
10/18/2013	20308991	Kim S	03/23/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20308991	Integrative genome-wide association analysis of cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders.	Brain cytoarchitecture	14 European ancestry bipolar cases, 15 European ancestry depression cases, 13 European ancestry schizophrenia cases, 14 European ancestry controls	NA	2q33.1	2	198737201	SATB2, PLCL1	PLCL1 - SATB2	5334	23314		      587.32	      532.30	rs11893063-?	rs11893063	0	11893063	Intergenic	1	0.46	2E-6	5.698970004336018		NR	NR	Affymetrix [309,531]	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	14q32.13	14	95254341	CLMN, FLJ45244, DICER1	CLMN			79789			rs8014194-A	rs8014194	0	8014194	intron	0	0.24	2E-8	7.698970004336018	(chol, diff)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q37.2	2	236247906	ASB18,LOC728087,IQCA	ASB18			401036			rs13390159-A	rs13390159	0	13390159	intron	0	0.16	2E-7	6.698970004336019	(LDL, diff)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	4q35.2	4	187424214	LOC644282,LOC644325,MRPS36P2	LOC339975			339975			rs1431005-A	rs1431005	0	1431005	intron	0	0.4	2E-7	6.698970004336019	(LDL, diff)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1p36.32	1	3363689	PRDM16,ARHGEF16,MEFGF6	PRDM16			63976			rs6658356-A	rs6658356	0	6658356	intron	0	0.06	2E-6	5.698970004336018	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1q31.2	1	190872543	FAM5C,LOC647132	BRINP3 - HNRNPA1P46	339479	100421399		      394.14	      273.28	rs2053302-T	rs2053302	0	2053302	Intergenic	1	0.18	4E-6	5.397940008672037	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1p13.3	1	109275908	CELSR2,PSRC1, SORT1	CELSR2			1952			rs646776-C	rs646776	0	646776	nearGene-3	0	0.19	4E-6	5.397940008672037	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2p21	2	47002700	TTC7A,MCFD2,FLJ40172	TTC7A			57217			rs17540621-C	rs17540621	0	17540621	intron	0	0.06	2E-6	5.698970004336018	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	20q13.31	20	57469128	HMG1L1,CTCFL,RBM38	RBM38 - HMGB1P1	55544	10357		       59.80	       18.81	rs6070116-G	rs6070116	0	6070116	Intergenic	1	0.25	4E-6	5.397940008672037	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	7p21.1	7	20607392	LOC402642, ABCB5, SP8	EEF1A1P27 - ABCB5	100130234	340273		       24.18	        8.23	rs10950821-G	rs10950821	0	10950821	Intergenic	1	0.26	7E-6	5.154901959985742	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1p32.3	1	53512446	GLIS1,DMRTB1,FLJ40434	GLIS1			148979			rs6588480-A	rs6588480	0	6588480	intron	0	0.15	8E-6	5.096910013008055	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	10p15.3	10	2489827	LOC727878,LOC728209,LOC441546	LINC00701 - PFKP	399708	5214		      174.75	      577.65	rs729397-C	rs729397	0	729397	Intergenic	1	0.26	8E-6	5.096910013008055	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	3p26.3	3	856978	CNTN6,LOC402123,CHL1	RPSAP32 - CNTN6	402123	27255		      238.62	      235.68	rs35964523-T	rs35964523	0	35964523	Intergenic	1	0.42	8E-6	5.096910013008055	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	7p21.1	7	16460517	SOSTDC1,LOC442511,LOC729920	ISPD-AS1 - SOSTDC1	100506025	25928		      189.91	         .96	rs10270805-A	rs10270805	0	10270805	Intergenic	1	0.07	9E-6	5.045757490560675	(chol, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1q42.2	1	232110281	DISC1, SIA1L2, DISC2	DISC2 - SIPA1L2	27184	57568		      291.76	      287.68	rs10746514-A	rs10746514	0	10746514	Intergenic	1	0.42	1E-6	5.999999999999999	(LDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	3p26.3	3	842168	LOC402123, CNTN6, CHL1	LINC01266			101927215			rs4684585-G	rs4684585	0	4684585	intron	0	0.43	9E-7	6.045757490560675	(LDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	6q15	6	88584026	RNGTT, ACTBP8, LOC644119	ACTBP8 - RNGTT	68	8732		      306.95	       25.87	rs12527253-G	rs12527253	0	12527253	Intergenic	1	0.34	1E-6	5.999999999999999	(LDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	4q35.2	4	186336422	LOC544042, F11, KLKB1	F11-AS1			285441			rs13148903-G	rs13148903	0	13148903	intron	0	0.25	3E-6	5.522878745280337	(LDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	10q21.3	10	64688715	ANXA2P3, LOC645084, RPL7AP1	RPL17P35 - ANXA2P3	100271284	305		       67.79	      136.81	rs7900909-C	rs7900909	0	7900909	Intergenic	1	0.15	8E-6	5.096910013008055	(LDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2p24.1	2	21072103	APOB, FLJ21820, GDF7	APOB - TDRD15	338	100129278		       28.03	       55.50	rs541041-G	rs541041	0	541041	Intergenic	1	0.16	8E-6	5.096910013008055	(LDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	7q11.21	7	64272953	ZNF679, LOC728927, LOC442320	ZNF679 - VN1R39P	168417	100312791		        6.02	         .59	rs10266483-A	rs10266483	0	10266483	Intergenic	1	0.35	8E-6	5.096910013008055	(LDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	8p12	8	29502788	LOC646909, DUSP4, KIF13B	DUSP4 - RPL17P33	1846	646909		      152.04	      129.27	rs10091038-A	rs10091038	0	10091038	Intergenic	1	0.43	3E-8	7.522878745280337	(HDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	9q21.33	9	84307121	SLC28A3, RMI1, LOC729388	SLC28A3			64078			rs10123041-T	rs10123041	0	10123041	intron	0	0.16	6E-6	5.221848749616356	(HDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	11q12.2	11	61830500	FADS2, FADS1, FEN	FADS2			9415			rs1535-G	rs1535	0	1535	intron	0	0.32	7E-6	5.154901959985742	(HDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	16q24.1	16	86347578	LOC401864, LOC283904, LOC729464	LINC00917			732275			rs11641231-G	rs11641231	0	11641231	nearGene-5	0	0.23	8E-6	5.096910013008055	(HDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q24.1	2	156068774	NR4A2, GPD2, LOC728038	MTND5P30 - NR4A2	100873266	4929		      755.35	      255.66	rs16839962-T	rs16839962	0	16839962	Intergenic	1	0.13	9E-6	5.045757490560675	(HDL, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	11q12.2	11	61842278	FADS2, FADS1, FADS3	FADS2			9415			rs174583-T	rs174583	0	174583	intron	0	0.34	3E-6	5.522878745280337	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q22.3	2	147720767	ACVR2A, ORC4L, LOC647065	PABPC1P2 - RPL26P14	728773	100133235		     1129.78	       81.08	rs7584099-G	rs7584099	0	7584099	Intergenic	1	0.41	5E-7	6.30102999566398	(Triglyceride, diff)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	9q33.2	9	120099019	MIRN147, CDK5RAP2, MEGF9	BRINP1 - MIR147A	1620	406939		      729.56	      145.96	rs16909449-C	rs16909449	0	16909449	Intergenic	1	0.25	1E-6	5.999999999999999	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	12p12.1	12	24125887	SOX5, FLJ32894, BCAT1	SOX5			6660			rs7979575-C	rs7979575	0	7979575	intron	0	0.16	2E-6	5.698970004336018	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	6p22.3	6	19969407	LOC729105, ID4, MBOAT1	ID4 - RPL29P17	3400	645224		      127.21	       72.94	rs16883019-C	rs16883019	0	16883019	Intergenic	1	0.04	7E-7	6.154901959985743	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q14.3	2	124570373	CNTNAP5	CNTNAP5			129684			rs2901331-A	rs2901331	0	2901331	intron	0	0.31	6E-6	5.221848749616356	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	8q24.13	8	125495147	TRIB1, NSMCE2, KIAA0196	TRIB1 - LINC00861	10221	100130231		       56.74	      427.38	rs2954038-C	rs2954038	0	2954038	Intergenic	1	0.32	7E-6	5.154901959985742	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	13q31.1	13	78881697	LOC390415, LOC647298, C13orf7	HSPD1P8 - CCT5P2	647298	390415		       30.49	       27.23	rs1218282-C	rs1218282	0	1218282	Intergenic	1	0.06	5E-6	5.301029995663981	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	21q21.3	21	30013925	GRIK1, CLDN17, CLDN8	GRIK1-AS1 - CLDN17	642976	26285		      249.92	      152.00	rs9305406-G	rs9305406	0	9305406	Intergenic	1	0.2	8E-6	5.096910013008055	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q24.3	2	164720654	COBLL1, LOC728184, GRB14	COBLL1			22837			rs10221833-C	rs10221833	0	10221833	intron	0	0.09	6E-6	5.221848749616356	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/14/2010	20339536	Barber MJ	03/22/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20339536	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	6q13	6	69364340	BAI3, LMBRD1, COL19A1	BAI3			577			rs3757057-T	rs3757057	0	3757057	intron	0	0.05	4E-6	5.397940008672037	(Triglyceride, sum)	NR	NR	Illumina [~2.5 million](imputed)	N
04/12/2010	20306291	Davis OS	03/21/2010	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/20306291	A three-stage genome-wide association study of general cognitive ability: hunting the small effects.	Cognitive ability	860 European ancestry children	2,619 European ancestry children	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [358,948] (pooled)	N
03/29/2010	20304703	Li Y	03/19/2010	Lancet Oncol	http://www.ncbi.nlm.nih.gov/pubmed/20304703	Genetic variants and risk of lung cancer in never smokers: a genome-wide association study.	Lung cancer	364 European ancestry cases, 364 European ancestry controls, 13 Other ancestry cases, 13 Other ancestry controls	446 European ancestry cases, 853 European ancestry controls, 65 Other ancestry cases, 154 Other ancestry controls	13q31.3	13	91792975	GPC5	GPC5			2262			rs2352028-A	rs2352028	0	2352028	intron	0	0.26	6E-6	5.221848749616356		   1.46	[1.26-1.70] 	Illumina [331,918]	N
04/12/2010	20303064	Houlihan LM	03/18/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20303064	Common variants of large effect in F12, KNG1, and HRG are associated with activated partial thromboplastin time.	Activated partial thromboplastin time	1,431 European ancestry individuals	NA	5q35.3	5	177415473	F12	F12 - GRK6	2161	2870		        5.90	       11.02	rs2731672-A	rs2731672	0	2731672	Intergenic	1	0.27	2E-30	29.69897000433602		    .45	[0.37-0.53] unit decrease	Illumina [542,050]	N
04/12/2010	20303064	Houlihan LM	03/18/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20303064	Common variants of large effect in F12, KNG1, and HRG are associated with activated partial thromboplastin time.	Activated partial thromboplastin time	1,431 European ancestry individuals	NA	3q27.3	3	186742138	KNG1	KNG1			3827			rs710446-G	rs710446	0	710446	missense	0	0.40	1E-21	21		    .36	[0.29-0.43] unit decrease	Illumina [542,050]	N
04/12/2010	20303064	Houlihan LM	03/18/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20303064	Common variants of large effect in F12, KNG1, and HRG are associated with activated partial thromboplastin time.	Activated partial thromboplastin time	1,431 European ancestry individuals	NA	3q27.3	3	186672838	HRG	HRG			3273			rs9898-T	rs9898	0	9898	missense	0	0.32	1E-11	11		    .26	[0.19-0.33] unit increase	Illumina [542,050]	N
04/02/2010	20303062	Medland SE	03/18/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20303062	A variant in LIN28B is associated with 2D:4D finger-length ratio, a putative retrospective biomarker of prenatal testosterone exposure.	Digit length ratio	2,889 European ancestry children and adolescents	3,659 European ancestry children	6q16.3	6	104959787	LIN28B	LIN28B			389421			rs314277-A	rs314277	0	314277	intron	0	0.15	2E-6	5.698970004336018		    .63	[0.41-0.85] increase in mean 2D:4D	Illumina [310,613]	N
04/02/2010	20305777	Nakajima M	03/18/2010	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/20305777	New sequence variants in HLA class II/III region associated with susceptibility to knee osteoarthritis identified by genome-wide association study.	Knee osteoarthritis	899 Japanese ancestry cases, 3,396 Japanese ancestry controls	167 Japanese ancestry cases, 347 Japanese ancestry controls, 813 European ancestry  cases, 1071 European ancestry controls, 	6p21.32	6	32405535	BTNL2, HLA-DQA2, HLA-DQB1	BTNL2;LOC101929163			56244;101929163;102725030			rs10947262-T	rs10947262	0	10947262	intron;ncRNA;ncRNA	0	0.42	5E-9	8.301029995663981		   1.31	[1.20-1.44] 	Illumina [459,393]	N
04/12/2010	20304771	Newman AB	03/18/2010	J Gerontol A Biol Sci Med Sci	http://www.ncbi.nlm.nih.gov/pubmed/20304771	A meta-analysis of four genome-wide association studies of survival to age 90 years or older: the Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.	Longevity	1,836 long-lived European ancestry individuals, 1,955 European ancestry controls	2,594 long-lived European ancestry individuals, 3,431 European ancestry controls	10q23.2	10	87578876	MINPP1	MINPP1 - RPS26P38	9562	100129552		       25.42	       63.73	rs9664222-C	rs9664222	0	9664222	Intergenic	1	0.79	7E-7	6.154901959985743		   1.22	[NR] 	Affymetrix and Illumina [2,287,520] (imputed)	N
04/08/2010	20237162	Bozaoglu K	03/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20237162	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican-American family members and individuals	NA	5q14.3	5	84203825	EDIL3	EDIL3			10085			rs347344-?	rs347344	0	347344	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [542,944]	N
04/08/2010	20237162	Bozaoglu K	03/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20237162	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican-American family members and individuals	NA	9q22.32	9	95614417	PTCH	PTCH1 - PSMA7P	5727	158441		       97.45	       38.44	rs10988802-?	rs10988802	0	10988802	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [542,944]	N
04/08/2010	20237162	Bozaoglu K	03/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20237162	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican-American family members and individuals	NA	6p21.2	6	36954908	PI16	PI16			221476			rs1405069-?	rs1405069	0	1405069	missense	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [542,944]	N
04/08/2010	20237162	Bozaoglu K	03/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20237162	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican-American family members and individuals	NA	1q23.2	1	159372649	OR10J3	OR10J8P - OR10J9P	343409	391120		        5.56	       32.77	rs6687840-?	rs6687840	0	6687840	Intergenic	1	NR	7E-6	5.154901959985742		NR	NR	Illumina [542,944]	N
04/08/2010	20237162	Bozaoglu K	03/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20237162	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican-American family members and individuals	NA	1q23.2	1	159387894	OR10J1	OR10J8P - OR10J9P	343409	391120		       20.81	       17.53	rs4446959-?	rs4446959	0	4446959	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [542,944]	N
04/08/2010	20237162	Bozaoglu K	03/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20237162	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican-American family members and individuals	NA	12q21.1	12	73435176	TRHDE	CHCHD3P2 - RPL31P48	100422354	645654		      823.86	      213.46	rs7963521-?	rs7963521	0	7963521	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [542,944]	N
04/08/2010	20237162	Bozaoglu K	03/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20237162	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican-American family members and individuals	NA	7q31.33	7	126797843	GRM8	GRM8			2918			rs11971186-?	rs11971186	0	11971186	intron	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [542,944]	N
03/26/2010	20231535	Smith NL	03/15/2010	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/20231535	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	Coagulation factor levels	Up to 23,608 European ancestry individuals	Up to 7,604 European ancestry individuals	20q11.22	20	35176751	PROCR	PROCR			10544			rs867186-G	rs867186	0	867186	missense	0	0.101	6E-37	36.22184874961636	(FVII)	NR	NR	Affymetrix & Illumina [~2.6 million] (imputed)	N
03/26/2010	20231535	Smith NL	03/15/2010	Circulation	http://www.ncbi.nlm.nih.gov/pubmed/20231535	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	Coagulation factor levels	Up to 23,608 European ancestry individuals	Up to 7,604 European ancestry individuals	6q24.3	6	147359223	STXBP5	STXBP5			134957			rs9390459-A	rs9390459	0	9390459	cds-synon	0	0.442	1E-22	22	(vWF)	   4.80	[2.1-7.5] % decrease	Affymetrix & Illumina [~2.6 million] (imputed)	N
03/24/2010	20228798	Franke A	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228798	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	7q22.1	7	99162881	SMURF1,KPNA7	SMURF1 - KPNA7	57154	402569		       18.76	       10.69	rs7809799-G	rs7809799	0	7809799	Intergenic	1	0.04	9E-11	10.04575749056067		   1.56	[1.36-1.78] 	Affymetrix [1,897,764] (imputed)	N
03/24/2010	20228798	Franke A	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228798	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	22q13.33	22	49997051	IL17REL	IL17REL			400935			rs5771069-G	rs5771069	0	5771069	missense	0	0.49	4E-8	7.397940008672037		   1.17	[1.11-1.25] 	Affymetrix [1,897,764] (imputed)	N
03/24/2010	20228798	Franke A	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228798	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	1p36.13	1	19901230	OTUD3	OTUD3			23252			rs4654925-G	rs4654925	0	4654925	intron	0	0.52	9E-22	21.04575749056067		   1.41	[1.30-1.54] 	Affymetrix [1,897,764] (imputed)	N
03/24/2010	20228798	Franke A	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228798	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	1q32.1	1	206770623	IL10	IL10			3586			rs3024493-T	rs3024493	0	3024493	intron	0	0.16	1E-12	12		   1.35	[1.22-1.50] 	Affymetrix [1,897,764] (imputed)	N
03/24/2010	20228798	Franke A	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228798	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	6p21.32	6	32465058	HLA-DRA	TRNAI25			100189401			rs9268923-C	rs9268923	0	9268923		0	0.67	4E-15	14.39794000867204		   1.45	[1.33-1.59] 	Affymetrix [1,897,764] (imputed)	N
03/24/2010	20228798	Franke A	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228798	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	10q24.2	10	99530544	NKX2-3	LOC101927324			101927324			rs6584283-T	rs6584283	0	6584283	intron	0	0.46	2E-6	5.698970004336018		   1.22	[1.12-1.32] 	Affymetrix [1,897,764] (imputed)	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1p36.13	1	19813543	RNF186,OTUD3,PLA2G2E	RNF186			54546			rs1317209-T	rs1317209	0	1317209	intron	0	NR	2E-10	9.698970004336017		   1.17	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1p36.13	1	19845367	RNF186,OTUD3,PLA2G2E	RNF186 - OTUD3	54546	23252		       30.09	       36.50	rs6426833-A	rs6426833	0	6426833	Intergenic	1	NR	2E-21	20.69897000433602		   1.30	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1p31.3	1	67228519	IL23R	IL23R			149233			rs2201841-A	rs2201841	0	2201841	intron	0	NR	1E-13	13		   1.27	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1q23.3	1	161502368	FCGR2A,FCGR2C	TRNAG25 - FCGR2A	100189274	2212		       21.73	        3.05	rs10800309-A	rs10800309	0	10800309	Intergenic	1	NR	3E-9	8.522878745280337		   1.20	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1q32.1	1	206766559	IL10,IL19	RPS14P1 - IL10	100271063	3586		       70.26	        1.04	rs3024505-T	rs3024505	0	3024505	Intergenic	1	NR	1E-8	8		   1.23	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	2p16.1	2	60959694	REL,CCDC139,PUS10	PUS10			150962			rs13003464-G	rs13003464	0	13003464	intron	0	NR	7E-9	8.154901959985743		   1.13	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	3p21.31	3	49684099	MST1	MST1			4485			rs3197999-T	rs3197999	0	3197999	missense	0	NR	4E-9	8.397940008672036		   1.20	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	5p15.33	5	583327	CEP72,TPPP	MIR4456 - CEP72	100616381	55722		       47.45	       28.96	rs4957048-C	rs4957048	0	4957048	Intergenic	1	NR	1E-9	8.999999999999998		   1.30	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	7q31.1	7	107862996	DLD,LAMB1	PIGCP2 - DLD	100128307	1738		       53.40	       28.15	rs4598195-A	rs4598195	0	4598195	Intergenic	1	NR	8E-8	7.096910013008055		   1.09	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	9q34.3	9	136372044	CARD9	CARD9			64170			rs4077515-C	rs4077515	0	4077515	missense	0	NR	5E-8	7.30102999566398		   1.14	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	10q24.2	10	99531836	NKX2-3	NKX2-3;LOC101927324			159296;101927324			rs11190140-T	rs11190140	0	11190140	nearGene-5;nearGene-5	0	NR	1E-8	8		   1.20	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	12q15	12	68110812	IFNG,IL26	HNRNPA1P70 - IFNG	341333	3458		       74.04	       43.96	rs1558744-A	rs1558744	0	1558744	Intergenic	1	NR	4E-12	11.39794000867204		   1.16	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	17q12	17	39905943	ORMDL3,ZPBP2M,GSDML	GSDMB			55876			rs2305480-A	rs2305480	0	2305480	missense	0	NR	3E-8	7.522878745280337		   1.15	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1q32.1	1	200966738	K1F21B	MROH3P			647215			rs11584383-T	rs11584383	0	11584383	nearGene-3	0	NR	2E-7	6.698970004336019		   1.27	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	9p24.1	9	4981602	JAK2	HNRNPA1P41 - JAK2	100128701	3717		       35.64	        3.64	rs10758669-C	rs10758669	0	10758669	Intergenic	1	NR	1E-6	5.999999999999999		   1.22	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	2q33.1	2	199425636	SATB2	SATB2			23314			rs1992950-A	rs1992950	0	1992950	intron	0	NR	5E-6	5.301029995663981		   1.10	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	17q12	17	39895095	GSDMB	ZPBP2 - GSDMB	124626	55876		       17.20	        9.50	rs8067378-A	rs8067378	0	8067378	Intergenic	1	NR	1E-7	7		   1.12	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	21q21.1	21	15432901	NR	NRIP1 - CYCSP42	8204	343727		      367.97	       57.62	rs1736135-T	rs1736135	0	1736135	Intergenic	1	NR	2E-7	6.698970004336019		   1.20	[NR] 	Affymetrix [266,047]	N
04/02/2010	20228799	McGovern DP	03/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20228799	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	16p13.13	16	10881454	CIITA	CIITA			4261			rs4781011-T	rs4781011	0	4781011	intron	0	NR	3E-6	5.522878745280337		   1.12	[NR] 	Affymetrix [266,047]	N
03/30/2010	20222955	Pattaro C	03/11/2010	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/20222955	A meta-analysis of genome-wide data from five European isolates reveals an association of COL22A1, SYT1, and GABRR2 with serum creatinine level.	Creatinine levels	4,006 European ancestry individuals	2,035 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~322,498]	N
03/30/2010	20212171	Buil A	03/08/2010	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20212171	C4BPB/C4BPA is a new susceptibility locus for venous thrombosis with unknown protein S-independent mechanism: results from genome-wide association and gene expression analyses followed by case-control studies.	C4b binding protein levels	352 related European ancestry individuals	NA	1q32.2	1	207096513	C4BPB, C4BPA	C4BPB			725			rs3813948-C	rs3813948	0	3813948	intron	0	NR	4E-10	9.397940008672037	(%a7b0)	NR	NR	Illumina [283,437]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	5q22.1	5	111069977	WDR36	TSLP			85480			rs3806932-?	rs3806932	0	3806932	nearGene-5	0	0.54	3E-9	8.522878745280337		   1.85	 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	16q24.1	16	84544635	NR	TLDC1 - COTL1	57707	23406		       39.88	       20.96	rs371915-?	rs371915	0	371915	Intergenic	1	0.87	2E-8	7.698970004336018		   1.90	[1.44-2.50] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	3q26.32	3	176312308	NR	EI24P1 - MIR7977	100129423	102465858		      243.41	      202.80	rs6799767-?	rs6799767	0	6799767	Intergenic	1	0.58	4E-7	6.397940008672037		   1.49	[1.18-1.85] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	4q21.1	4	76499631	NR	SHROOM3			57619			rs1986734-?	rs1986734	0	1986734	intron	0	0.49	1E-6	5.999999999999999		   1.54	[1.22-1.89] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	5q14.2	5	82643499	NR	FLJ41309 - RPL5P16	645079	100270837		      256.98	      134.30	rs1032757-T	rs1032757	0	1032757	Intergenic	1	0.07	2E-6	5.698970004336018		   1.96	[1.40-2.74] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	12q13.3	12	57109992	STAT6	STAT6			6778			rs167769-T	rs167769	0	167769	intron	0	0.37	2E-6	5.698970004336018		   1.36	[1.10-1.69] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	11q21	11	95689703	NR	SESN3 - FGFR3P2	143686	100462815		      457.16	       67.25	rs1939875-T	rs1939875	0	1939875	Intergenic	1	0.26	3E-6	5.522878745280337		   1.54	[1.22-1.93] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	4q21.1	4	76497528	NR	SHROOM3			57619			rs13106227-?	rs13106227	0	13106227	intron	0	0.62	4E-6	5.397940008672037		   1.52	[1.20-1.92] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	6p11.2	6	57982677	NR	GAPDHP15 - RBBP4P4	642317	727842		       14.02	      137.07	rs9500256-?	rs9500256	0	9500256	Intergenic	1	0.58	5E-6	5.301029995663981		   2.04	[1.52-2.70] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	17q24.3	17	70294992	NR	CALM2P1 - CASC17	100128390	101928165		       52.61	      802.78	rs6501384-T	rs6501384	0	6501384	Intergenic	1	0.33	6E-6	5.221848749616356		   1.41	[1.13-1.76] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	8q22.2	8	98076353	NR	ERICH5			203111			rs13278732-T	rs13278732	0	13278732	intron	0	0.27	6E-6	5.221848749616356		   1.31	[1.04-1.65] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	18q12.1	18	31322359	DSG1	DSG1			1828			rs7236477-G	rs7236477	0	7236477	intron	0	0.03	7E-6	5.154901959985742		   2.22	[1.39-3.55] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	8q24.12	8	120682410	NR	SNTB1			6641			rs11989782-A	rs11989782	0	11989782	intron	0	0.23	7E-6	5.154901959985742		   1.53	[1.21-1.93] 	Illumina [~550,000]	N
03/30/2010	20208534	Rothenberg ME	03/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20208534	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	10q23.1	10	83663098	NR	MARK2P15 - HMGN2P8	100533794	100288691		      348.65	      418.23	rs2224865-G	rs2224865	0	2224865	Intergenic	1	0.31	9E-6	5.045757490560675		   1.44	[1.15-1.79] 	Illumina [~550,000]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	1p31.1	1	82846152	Intergenic	ST13P20 - ARF4P5	729828	100316867		     1123.09	      726.57	rs11163585-?	rs11163585	0	11163585	Intergenic	1	0.24	9E-7	6.045757490560675	(perphenazine-HDL)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	1p21.2	1	101086370	Intergenic	LOC102606465			102606465			rs17410015-?	rs17410015	0	17410015	intron	0	0.063	2E-6	5.698970004336018	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2p25.3	2	1773378	Intergenic	PXDN - MYT1L	7837	23040		       28.85	       15.74	rs6735179-?	rs6735179	0	6735179	Intergenic	1	0.346	1E-7	7	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2p25.1	2	7007842	RNF144A	RNF144A			9781			rs6741819-?	rs6741819	0	6741819	intron	0	0.305	2E-7	6.698970004336019	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2p16.1	2	60273009	Intergenic	RNA5SP94 - MIR4432	100873327	100616473		      578.14	      114.35	rs10202231-?	rs10202231	0	10202231	Intergenic	1	0.457	7E-7	6.154901959985743	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2p24.1	2	21617221	Intergenic	TDRD15 - RNA5SP87	100129278	100873320		      479.24	      721.67	rs1117324-?	rs1117324	0	1117324	Intergenic	1	0.156	3E-7	6.522878745280337	(risperidone-hip circumference)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2p12	2	79460126	Intergenic	REG3A - CTNNA2	5068	1496		      300.37	       52.81	rs399885-?	rs399885	0	399885	Intergenic	1	0.327	5E-7	6.30102999566398	(clozapine-heart rate)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2p12	2	79482228	Intergenic	REG3A - CTNNA2	5068	1496		      322.47	       30.71	rs7570469-?	rs7570469	0	7570469	Intergenic	1	0.418	6E-7	6.221848749616355	(clozapine-heart rate)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2p11.2	2	84123793	Intergenic	ST6GALNAC2P1 - FUNDC2P2	100422716	388965		       83.03	      166.89	rs1534238-?	rs1534238	0	1534238	Intergenic	1	0.381	3E-6	5.522878745280337	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	2q33.1	2	201942473	Intergenic	CDK15 - FZD7	65061	8324		       46.92	       92.11	rs17385675-?	rs17385675	0	17385675	Intergenic	1	0.069	3E-6	5.522878745280337	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	4q23	4	99792608	Intergenic	LOC285556			285556			rs11735070-?	rs11735070	0	11735070	intron	0	0.338	1E-6	5.999999999999999	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	4q24	4	101010669	Intergenic	LINC01216 - PPP3CA	100874275	5530		      335.56	       12.76	rs1405687-?	rs1405687	0	1405687	Intergenic	1	0.088	5E-8	7.30102999566398	(ziprasidone-hip circumference)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	5q14.3	5	91003406	GPR98	GPR98			84059			rs1967256-?	rs1967256	0	1967256	intron	0	0.148	3E-8	7.522878745280337	(olanzapine-hemoglobin A1c	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	5q31.3	5	143624040	Intergenic	NR3C1			2908			rs17100498-?	rs17100498	0	17100498	intron	0	0.126	5E-7	6.30102999566398	(risperidone-hemoglobin A1c)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	6p21.31	6	35395980	PPARD	PPARD			5467			rs9658108-?	rs9658108	0	9658108	intron	0	0.052	5E-7	6.30102999566398	(clozapine-glucose)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	6q14.3	6	85982222	Intergenic	LOC101928842			101928842			rs1577917-?	rs1577917	0	1577917	intron	0	0.21	3E-6	5.522878745280337	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	7p21.1	7	17521959	Intergenic	LOC101927630			101927630			rs10499504-?	rs10499504	0	10499504	intron	0	0.11	4E-7	6.397940008672037	(clozapine-total cholesterol)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	7q22.3	7	107122773	PRKAR2B	PRKAR2B			5577			rs13224682-?	rs13224682	0	13224682	intron	0	0.072	6E-8	7.221848749616355	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	8q22.3	8	104980468	Intergenic	LRP12 - RPL23P9	29967	100129377		      391.44	         .67	rs977396-?	rs977396	0	977396	Intergenic	1	0.089	3E-7	6.522878745280337	(olanzapine-total cholesterol)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	9q31.1	9	102182473	Intergenic	ARL2BPP7 - LINC00587	100131629	414319		      126.65	      364.89	rs320209-?	rs320209	0	320209	Intergenic	1	0.068	4E-7	6.397940008672037	(clozapine-glucose)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	9q33.1	9	117164147	ASTN2	ASTN2			23245			rs4838255-?	rs4838255	0	4838255	intron	0	0.139	3E-7	6.522878745280337	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	10p12.33	10	18108318	Intergenic	SLC39A12 - CACNB2	221074	783		       65.03	       32.36	rs17661538-?	rs17661538	0	17661538	Intergenic	1	0.138	1E-6	5.999999999999999	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	10p11.22	10	31077342	Intergenic	DDX10P1 - RNA5SP309	100421371	100873583		      156.21	      182.26	rs2994684-?	rs2994684	0	2994684	Intergenic	1	0.155	3E-7	6.522878745280337	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	11q23.1	11	112585498	Intergenic	RPL23AP62 - NCAM1	100271617	4684		      123.58	      375.75	rs7105881-?	rs7105881	0	7105881	Intergenic	1	0.367	3E-7	6.522878745280337	(risperidone-hip circumference)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	11q24.2	11	126989261	KIRREL3	KIRREL3;MIR3167			84623;100422918			rs620875-?	rs620875	0	620875	intron;nearGene-5	0	0.101	3E-6	5.522878745280337	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	12p12.1	12	24236726	SOX5	SOX5;LOC101928471			6660;101928471			rs1464500-?	rs1464500	0	1464500	intron;intron	0	0.232	1E-7	7	(perphenazine-HDL)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	13q12.11	13	21730960	Intergenic	FGF9 - LINC00424	2254	100874182		       26.46	      141.84	rs518590-?	rs518590	0	518590	Intergenic	1	0.21	2E-7	6.698970004336019	(quetiapine-HDL)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	14q32.13	14	95205534	CLMN	CLMN			79789			rs1187614-?	rs1187614	0	1187614	intron	0	0.313	2E-7	6.698970004336019	(perphenazine-total cholesterol)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	15q14	15	37057601	MEIS2	MEIS2			4212			rs1568679-?	rs1568679	0	1568679	intron	0	0.103	1E-8	8	(risperidone-hip circumference)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	16p13.13	16	10465406	ATF7IP2	ATF7IP2			80063			rs13335336-?	rs13335336	0	13335336	intron	0	0.078	7E-7	6.154901959985743	(risperidone-hemoglobin A1c)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	16p13.12	16	13160099	LOC729993	SHISA9			729993			rs153091-?	rs153091	0	153091	intron	0	0.227	2E-6	5.698970004336018	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	16q23.3	16	82560778	Intergenic	LOC101928392			101928392			rs4783227-?	rs4783227	0	4783227	intron	0	0.424	4E-7	6.397940008672037	(olanzapine-total cholesterol)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	16q23.3	16	83453866	CDH13	CDH13			1012			rs17216786-?	rs17216786	0	17216786	intron	0	0.054	1E-6	5.999999999999999	(clozapine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	18q12.2	18	36527489	FHOD3	FHOD3			80206			rs17651157-?	rs17651157	0	17651157	intron	0	0.068	1E-7	7	(perphenazine-triglycerides)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	18q22.2	18	70475178	Intergenic	RPS2P6 - GTSCR1	342808	220158		       44.02	      155.34	rs8092443-?	rs8092443	0	8092443	Intergenic	1	0.225	1E-6	5.999999999999999	(risperidone-hemoglobin A1c)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	18q22.2	18	70486384	Intergenic	RPS2P6 - GTSCR1	342808	220158		       55.22	      144.14	rs11663206-?	rs11663206	0	11663206	Intergenic	1	0.289	2E-6	5.698970004336018	(risperidone-hemoglobin A1c)	NR	NR	Affymetrix [492,900]	N
04/06/2010	20195266	Adkins DE	03/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20195266	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African-American, and 103 other ancestry cases 	NA	20q13.2	20	55184590	Intergenic	RPL12P4 - CBLN4	116149	140689		      109.41	      812.77	rs6092078-?	rs6092078	0	6092078	Intergenic	1	0.115	3E-6	5.522878745280337	(risperidone-hip circumference)	NR	NR	Affymetrix [492,900]	N
03/25/2010	20202923	Bierut LJ	03/02/2010	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/20202923	A genome-wide association study of alcohol dependence.	Alcohol dependence	1,235 European ancestry cases, 662 African American cases, 1,433 European ancestry controls, 499 African American controls	219 European ancestry families, 35 African American families, 4 other ancestry families,  487 European ancestry cases, 1,358 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [948,658]	N
03/29/2010	20201924	Edenberg HJ	03/01/2010	Alcohol Clin Exp Res	http://www.ncbi.nlm.nih.gov/pubmed/20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Alcohol dependence	847 European ancestry cases, 552 European ancestry controls, 345 African American cases, 140 African American controls	262 families	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to 941,298]	N
07/04/2010	20487506	Joubert BR	03/01/2010	Genome Med	http://www.ncbi.nlm.nih.gov/pubmed/20487506	A whole genome association study of mother-to-child transmission of HIV in Malawi.	HIV (mother-to-child transmission)	100 Malawian ancestry infant cases, 126 Malawian ancestry infant controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [586,681]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NR	1p22.2	1	90074206	ZNF326	ZNF326 - BARHL2	284695	343472		       45.66	      637.82	rs2813746-C	rs2813746	0	2813746	Intergenic	1	0.46	2E-6	5.698970004336018		 148.10	[NR] unit increase	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NR	10p12.31	10	18871100	Intergenic	AIFM1P1 - MALRD1	645120	340895		      132.27	      177.67	rs16917919-A	rs16917919	0	16917919	Intergenic	1	0.37	8E-6	5.096910013008055		 147.60	[NR] unit increase	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NR	12q23.2	12	101293265	UTP20	UTP20			27340			rs2290720-G	rs2290720	0	2290720	intron	0	0.43	3E-6	5.522878745280337		 148.10	[NR] unit decrease	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NR	16q21	16	59856794	Intergenic	LOC101927580			101927580			rs8056650-G	rs8056650	0	8056650	intron	0	0.07	1E-6	5.999999999999999		 302.50	[NR] unit decrease	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	3p22.1	3	39708102	Intergenic	NFU1P1 - MYRIP	100132681	25924		       63.40	      100.81	rs9832461-A	rs9832461	0	9832461	Intergenic	1	0.24	4E-6	5.397940008672037		#######	[NR] unit increase	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	4p15.1	4	33078033	Intergenic	MAPRE1P2 - RPL31P31	642305	727792		       66.22	      890.11	rs1448284-T	rs1448284	0	1448284	Intergenic	1	0.03	2E-6	5.698970004336018		#######	[NR] unit increase	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	12p13.1	12	13770394	GRIN2B	GRIN2B			2904			rs11055612-C	rs11055612	0	11055612	intron	0	0.5	3E-6	5.522878745280337		#######	[NR] unit decrease	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	14q24.3	14	78308963	KIAA0743	NRXN3			9369			rs7155434-A	rs7155434	0	7155434	intron	0	0.27	8E-6	5.096910013008055		#######	[NR] unit increase	Illumina [546,314]	N
09/27/2013	20197096	Stein JL	03/01/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20197096	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	15q22.2	15	62395140	Intergenic	TLN2;LOC102724972			83660;102724972			rs2456930-G	rs2456930	0	2456930	intron;intron	0	0.38	3E-7	6.522878745280337		#######	[NR] unit increase	Illumina [546,314]	N
03/29/2010	20235792	Uhl GR	03/01/2010	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/20235792	Genome-wide association for smoking cessation success: participants in the Patch in Practice trial of nicotine replacement.	Smoking cessation	108 Abstinent individuals , 216 Non-abstinent individuals	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix 6.0 [NR] (pooled)	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q31.2	1	192567683	RGS1	RGS21 - RGS1	431704	5996		      200.40	        8.04	rs2816316-?	rs2816316	0	2816316	Intergenic	1	0.84	2E-17	16.69897000433602		   1.25	[1.19-1.32] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2p16.1	2	60959694	REL, AHSA2	PUS10			150962			rs13003464-G	rs13003464	0	13003464	intron	0	0.40	4E-13	12.39794000867204		   1.15	[1.11-1.20] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2q12.1	2	102454108	IL18RAP, IL18R1, IL1RL1, IL1RL2	MIR4772 - SLC9A4	100616157	389015		       21.74	       18.61	rs917997-A	rs917997	0	917997	Intergenic	1	0.24	1E-15	15		   1.19	[1.14-1.25] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2q31.3	2	181131318	ITGA4, UBE2E3	LOC101927156			101927156			rs13010713-G	rs13010713	0	13010713	intron	0	0.45	5E-11	10.30102999566398		   1.13	[1.09-1.18] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2q33.2	2	203937855	CTLA4, ICOS, CD28	ICOS;LOC101927840			29851;101927840			rs4675374-A	rs4675374	0	4675374	intron;ncRNA	0	0.22	6E-9	8.221848749616356		   1.14	[1.09-1.19] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3p21.31	3	46193709	CCR1, CCR2, CCRL2, CCR3, CCR5, CCR9	FLT1P1 - CCR1	391533	1230		       49.92	        8.00	rs13098911-A	rs13098911	0	13098911	Intergenic	1	0.10	3E-17	16.52287874528034		   1.30	[1.23-1.39] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q25.33	3	159947262	IL12A	IL12A-AS1			101928376			rs17810546-G	rs17810546	0	17810546	intron	0	0.13	4E-28	27.39794000867203		   1.36	[1.29-1.44] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q28	3	188394766	LPP	LPP			4026			rs1464510-A	rs1464510	0	1464510	intron	0	0.49	3E-40	39.52287874528034		   1.29	[1.25-1.34] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	4q27	4	122194347	IL2, IL21	KIAA1109			84162			rs13151961-?	rs13151961	0	13151961	intron	0	0.86	2E-27	26.69897000433602		   1.35	[1.28-1.43] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p21.32	6	32638107	HLA-DQA1, HLA-DQB1	HLA-DQA1			3117			rs2187668-A	rs2187668	0	2187668	intron	0	0.26	1E-50	50		   6.23	[5.95-6.52] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q23.3	6	137651931	TNFAIP3	BTF3L4P3 - TNFAIP3	391040	7128		      107.49	      215.26	rs2327832-G	rs2327832	0	2327832	Intergenic	1	0.22	4E-19	18.39794000867203		   1.23	[1.17-1.28] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q25.3	6	159044945	TAGAP	TAGAP			117289			rs1738074-A	rs1738074	0	1738074	UTR-5	0	0.43	3E-15	14.52287874528034		   1.16	[1.12-1.21] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	12q24.12	12	111569952	SH2B3	ATXN2			6311			rs653178-G	rs653178	0	653178	intron	0	0.50	7E-21	20.15490195998574		   1.20	[1.15-1.24] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	18p11.21	18	12809341	PTPN2	PTPN2			5771			rs1893217-G	rs1893217	0	1893217	intron	0	0.17	3E-10	9.522878745280336		   1.17	[1.12-1.23] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p36.32	1	2595307	TNFRSF14, MMEL1	MMEL1			79258			rs3748816-?	rs3748816	0	3748816	missense	0	0.66	3E-9	8.522878745280337		   1.12	[1.09-1.18] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p36.11	1	24977085	RUNX3	MIR6731 - MIR4425	102465437	100616365		       57.67	       46.42	rs10903122-?	rs10903122	0	10903122	Intergenic	1	0.52	2E-10	9.698970004336017		   1.12	[1.09-1.18] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q32.1	1	200923009	Intergenic	C1orf106 - MROH3P	55765	647215		        7.27	        5.94	rs296547-?	rs296547	0	296547	Intergenic	1	0.64	4E-9	8.397940008672036		   1.12	[1.09-1.16] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2p14	2	68371823	PLEK	PLEK			5341			rs17035378-?	rs17035378	0	17035378	intron	0	0.72	8E-9	8.096910013008056		   1.14	[1.09-1.19] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3p22.3	3	32973977	CCR4	CCR4 - GLB1	1233	2720		       19.07	       22.63	rs13314993-C	rs13314993	0	13314993	Intergenic	1	0.46	3E-9	8.522878745280337		   1.13	[1.08-1.17] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q13.33	3	119399949	CD80, KTELC1	ARHGAP31			57514			rs11712165-C	rs11712165	0	11712165	intron	0	0.39	8E-9	8.096910013008056		   1.13	[1.08-1.17] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q15	6	90216893	BACH2, MAP3K7	BACH2			60468			rs10806425-A	rs10806425	0	10806425	intron	0	0.40	4E-10	9.397940008672037		   1.13	[1.09-1.17] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6q22.33	6	127957653	PTPRK, THEMIS	MRPS17P5 - PTPRK	359758	5796		       47.64	       11.13	rs802734-G	rs802734	0	802734	Intergenic	1	0.31	3E-14	13.52287874528034		   1.17	[1.12-1.22] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	8q24.21	8	128252343	Intergenic	MIR1208 - LINC01263	100302281	101927774		      102.16	      152.93	rs9792269-?	rs9792269	0	9792269	Intergenic	1	0.76	3E-9	8.522878745280337		   1.14	[1.10-1.19] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	10q22.3	10	79298270	ZMIZ1	ZMIZ1			57178			rs1250552-?	rs1250552	0	1250552	intron	0	0.53	9E-10	9.045757490560675		   1.12	[1.09-1.16] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	11q24.3	11	128511079	ETS1	ETS1			2113			rs11221332-A	rs11221332	0	11221332	intron	0	0.24	5E-16	15.30102999566398		   1.21	[1.16-1.27] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	16p13.13	16	11310036	CIITA, SOCS1, CLEC16A	MIR548H2 - RMI2	100313773	116028		        3.51	       35.42	rs12928822-?	rs12928822	0	12928822	Intergenic	1	0.84	3E-8	7.522878745280337		   1.16	[1.10-1.22] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	21q22.3	21	44227538	ICOSLG	ICOSLG			23308			rs4819388-?	rs4819388	0	4819388	intron	0	0.72	2E-9	8.698970004336019		   1.14	[1.09-1.19] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p36.23	1	7986612	PARK7, TNFRSF9	PARK7 - ERRFI1	11315	54206		        1.33	       25.11	rs12727642-A	rs12727642	0	12727642	Intergenic	1	0.19	9E-8	7.045757490560674		   1.14	[1.09-1.20] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p31.3	1	61326191	NFIA	NFIA			4774			rs6691768-?	rs6691768	0	6691768	intron	0	0.62	1E-7	7		   1.11	[1.06-1.15] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q24.2	1	167442147	CD247	CD247			919			rs864537-?	rs864537	0	864537	intron	0	0.61	4E-7	6.397940008672037		   1.10	[1.06-1.15] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q24.3	1	172741860	FASLG, TNFSF18, TNFSF4	FASLG - SLC25A38P1	356	441915		       74.99	        6.39	rs859637-A	rs859637	0	859637	Intergenic	1	0.49	2E-6	5.698970004336018		   1.10	[1.06-1.14] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3p14.1	3	69203748	FRMD4B	FRMD4B			23150			rs6806528-A	rs6806528	0	6806528	intron	0	0.10	2E-7	6.698970004336019		   1.19	[1.12-1.27] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q26.2	3	169774313	Intergenic	MYNN			55892			rs10936599-A	rs10936599	0	10936599	cds-synon	0	0.25	5E-7	6.30102999566398		   1.12	[1.07-1.16] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	6p25.3	6	383546	IRF4	DUSP22 - IRF4	56940	3662		       32.19	        8.19	rs1033180-A	rs1033180	0	1033180	Intergenic	1	0.08	6E-8	7.221848749616355		   1.21	[1.13-1.29] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	7p14.1	7	37334906	ELMO1	ELMO1			9844			rs6974491-A	rs6974491	0	6974491	intron	0	0.17	2E-7	6.698970004336019		   1.14	[1.09-1.20] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	13q14.2	13	50261579	Intergenic	DLEU1			10301			rs2762051-A	rs2762051	0	2762051	intron	0	0.18	7E-7	6.154901959985743		   1.13	[1.08-1.18] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	14q24.1	14	68811487	ZFP36L1	ZFP36L1 - MAGOH3P	677	90352		       15.24	       50.24	rs4899260-A	rs4899260	0	4899260	Intergenic	1	0.26	4E-7	6.397940008672037		   1.12	[1.07-1.16] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	17q21.31	17	46788073	Intergenic	WNT3			7473			rs2074404-?	rs2074404	0	2074404	intron	0	0.75	1E-6	5.999999999999999		   1.11	[1.06-1.16] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	22q11.21	22	21628603	UBE2L3, YDJC	YDJC			150223			rs2298428-A	rs2298428	0	2298428	missense	0	0.20	2E-7	6.698970004336019		   1.13	[1.08-1.19] 	Illumina [292,387]	N
03/29/2010	20190752	Dubois PC	02/28/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20190752	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	Xp22.2	23	12953405	TLR7, TLR8	TLR8 - TMSB4X	51311	7114		       30.23	       21.70	rs5979785-?	rs5979785	0	5979785	Intergenic	1	0.74	6E-8	7.221848749616355		   1.14	[1.09-1.19] 	Illumina [292,387]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	4p15.32	4	17796343	NCAPG, LCORL	FAM184B - DCAF16	27146	54876		       14.83	        4.31	rs7678436-A	rs7678436	0	7678436	Intergenic	1	0.26	8E-15	14.09691001300805		    .09	[0.07-0.11] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	6p21.31	6	34197944	HMGA1	TRNAI25			100189401			rs7742369-G	rs7742369	0	7742369		0	0.14	1E-13	13		    .11	[0.08-0.14] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	8q12.1	8	56187590	PLAG1	PLAG1			5324			rs7833986-A	rs7833986	0	7833986	intron	0	0.08	8E-10	9.096910013008054		    .12	[0.08-0.16] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2p16.1	2	55869757	EFEMP1	EFEMP1			2202			rs3791679-A	rs3791679	0	3791679	intron	0	0.25	6E-9	8.221848749616356		    .07	[0.05-0.09] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	3q23	3	141418193	ZBTB38	ZBTB38			253461			rs9825379-A	rs9825379	0	9825379	intron	0	0.24	6E-9	8.221848749616356		    .07	[0.05-0.09] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2q37.1	2	232212354	DIS3L2	DIS3L2			129563			rs7571816-A	rs7571816	0	7571816	intron	0	0.45	9E-9	8.045757490560675		    .06	[0.04-0.08] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	9q34.3	9	136229894	LHX3, QSOX2	QSOX2			169714			rs12338076-C	rs12338076	0	12338076	intron	0	0.34	2E-8	7.698970004336018		    .06	[0.04-0.08] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	12q23.2	12	102405820	IGF1	IGF1			3479			rs5742692-G	rs5742692	0	5742692	intron	0	0.27	4E-8	7.397940008672037		    .07	[0.05-0.09] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2p22.3	2	33246125	LTBP1	LTBP1			4052			rs3769528-G	rs3769528	0	3769528	intron	0	0.15	8E-8	7.096910013008055		    .08	[0.05-0.11] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	15q24.2	15	75463126	SIN3A, PTPN9	LOC102723785			102723785			rs4886707-T	rs4886707	0	4886707	intron	0	0.42	8E-8	7.096910013008055		    .06	[0.04-0.08] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	15q25.2	15	83913372	ADAMTSL3	ADAMTSL3			57188			rs4842838-G	rs4842838	0	4842838	missense	0	0.29	1E-7	7		    .06	[0.04-0.08] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	1p36.13	1	17005181	ATP13A2, SDHB	ATP13A2			23400			rs3738814-A	rs3738814	0	3738814	intron	0	0.35	2E-7	6.698970004336019		    .06	[0.04-0.08] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	15q21.2	15	51277213	CYP19A1	CYP19A1			1588			rs2305707-G	rs2305707	0	2305707	intron	0	0.37	7E-7	6.154901959985743		    .06	[0.04-0.07] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	7p22.3	7	2756323	GNA12	GNA12			2768			rs798497-G	rs798497	0	798497	intron	0	0.27	7E-7	6.154901959985743		    .06	[0.04-0.08] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	12q13.13	12	53647408	ATF7, ATP5G2	RPL31P51 - ATP5G2	100271475	517		       14.23	       17.75	rs11170631-C	rs11170631	0	11170631	Intergenic	1	0.36	9E-7	6.045757490560675		    .05	[0.03-0.07] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	20q11.22	20	35509524	GDF5, UQCC	CEP250			11190			rs2236164-C	rs2236164	0	2236164	intron	0	0.22	2E-6	5.698970004336018		    .06	[0.04-0.08] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	10q26.13	10	122406099	PLEKHA1	PLEKHA1			59338			rs6585827-G	rs6585827	0	6585827	intron	0	0.43	2E-6	5.698970004336018		    .05	[0.03-0.07] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	13q31.3	13	91363723	GPC5	MIR92A1 - GPC5	407048	2262		       12.33	       34.96	rs8002779-A	rs8002779	0	8002779	Intergenic	1	0.48	3E-6	5.522878745280337		    .05	[0.03-0.07] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	18q11.2	18	23155444	CABLES1	CABLES1			91768			rs4369779-T	rs4369779	0	4369779	intron	0	0.20	3E-6	5.522878745280337		    .06	[0.04-0.08] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2q35	2	219084462	IHH	NHEJ1			79840			rs16859517-T	rs16859517	0	16859517	intron	0	0.39	5E-6	5.301029995663981		    .05	[0.03-0.07] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	7p15.3	7	21984422	CDCA7L	CDCA7L - RAPGEF5	55536	9771		       38.50	      133.87	rs1175000-C	rs1175000	0	1175000	Intergenic	1	0.40	5E-6	5.301029995663981		    .05	[0.03-0.07] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	16q23.3	16	83605730	CDH13	CDH13			1012			rs6563943-A	rs6563943	0	6563943	intron	0	0.32	6E-6	5.221848749616356		    .05	[0.03-0.07] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	13q14.11	13	42057583	DGKH	DGKH			160851			rs6561030-A	rs6561030	0	6561030	intron	0	0.28	7E-6	5.154901959985742		    .05	[0.03-0.07] cm decrease	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	1q25.3	1	184033740	GLT25D2	COLGALT2			23127			rs756199-G	rs756199	0	756199	intron	0	0.42	7E-6	5.154901959985742		    .05	[0.03-0.07] cm increase	Illumina [420,885]	N
03/25/2010	20189936	Okada Y	02/26/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20189936	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	16p13.11	16	15038117	PDXDC1, NTAN1	PDXDC1;NTAN1			23042;123803			rs1136001-T	rs1136001	0	1136001	intron;missense	0	0.44	7E-6	5.154901959985742		    .05	[0.03-0.07] cm decrease	Illumina [420,885]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	17q24.3	17	70194685	KCNJ2	KCNJ2 - CALM2P1	3759	100128390		       14.64	       46.56	rs8079702-G	rs8079702	0	8079702	Intergenic	1	0.39	1E-14	14		   1.15	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	Xq13.1	23	69585474	EDA	FAM155B - EDA	27112	1896		       52.97	       30.59	rs4844096-G	rs4844096	0	4844096	Intergenic	1	0.42	5E-11	10.30102999566398		    .73	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	12q14.3	12	65389598	MSRB3	MSRB3			253827			rs10506525-C	rs10506525	0	10506525	intron	0	0.27	9E-7	6.045757490560675		    .18	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	17q21.32	17	49007349	IGF2BP1	IGF2BP1			10642			rs9674544-G	rs9674544	0	9674544	intron	0	0.46	2E-8	7.698970004336018		    .27	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	14q24.1	14	68322207	RAD51L1	RAD51B			5890			rs1956529-T	rs1956529	0	1956529	intron	0	0.38	3E-8	7.522878745280337		    .51	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	2q35	2	217013486	Intergenic	TNP1 - DIRC3	7141	729582		      153.43	      270.54	rs6435957-T	rs6435957	0	6435957	Intergenic	1	0.37	4E-7	6.397940008672037		    .37	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	17q21.32	17	48539657	HOXB1, HOXB2	HOXB1 - HOXB2	3211	3212		        8.75	        3.00	rs6504340-G	rs6504340	0	6504340	Intergenic	1	0.22	6E-7	6.221848749616355		    .44	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	6q22.31	6	120777311	Intergenic	RNA5SP215 - COX6A1P3	100873475	100287768		       90.57	        3.88	rs2817937-C	rs2817937	0	2817937	Intergenic	1	0.12	3E-6	5.522878745280337		    .25	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	12q14.3	12	65970729	HMGA2	HMGA2 - MIR6074	8091	102464827		        4.44	       52.89	rs12424086-C	rs12424086	0	12424086	Intergenic	1	0.23	4E-6	5.397940008672037		    .22	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	17q24.3	17	70194685	KCNJ2	KCNJ2 - CALM2P1	3759	100128390		       14.64	       46.56	rs8079702-G	rs8079702	0	8079702	Intergenic	1	0.39	4E-22	21.39794000867203		   1.62	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	Xq13.1	23	69673072	EDA	EDA			1896			rs5936487-G	rs5936487	0	5936487	intron	0	0.39	6E-11	10.22184874961635		    .50	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	12q14.3	12	65389598	MSRB3	MSRB3			253827			rs10506525-C	rs10506525	0	10506525	intron	0	0.27	6E-9	8.221848749616356		    .46	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	17q21.32	17	49007349	IGF2BP1	IGF2BP1			10642			rs9674544-G	rs9674544	0	9674544	intron	0	0.46	8E-7	6.096910013008056		    .25	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	6q21	6	105646182	Intergenic	RPL35P3 - PRDM1	728010	639		      343.32	      440.14	rs9386463-G	rs9386463	0	9386463	Intergenic	1	0.45	6E-7	6.221848749616355		    .38	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20195514	Pillas D	02/26/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20195514?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=14	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	12q14.3	12	65970729	HMGA2	HMGA2 - MIR6074	8091	102464827		        4.44	       52.89	rs12424086-C	rs12424086	0	12424086	Intergenic	1	0.23	8E-6	5.096910013008055		    .29	[NR] % variance explained	Illumina [300,766]	N
03/25/2010	20189245	Han S	02/25/2010	Leuk Res	http://www.ncbi.nlm.nih.gov/pubmed/20189245	Genome-wide association study of childhood acute lymphoblastic leukemia in Korea.	Acute lymphoblastic leukemia (childhood)	45 Korean ancestry cases, 48 Korean ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [681,931]	N
03/25/2010	20185149	Athanasiu L	02/23/2010	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/20185149	Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.	Schizophrenia	201 European ancestry cases, 305 European ancestry controls	2,663 European ancestry cases, 13,780 European ancestry controls	9p21.2	9	26935998	PLAA	PLAA			9373			rs7045881-?	rs7045881	0	7045881	intron	0	NR	2E-6	5.698970004336018		   1.16	[NR] 	Affymetrix [572,888]	N
03/25/2010	20185149	Athanasiu L	02/23/2010	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/20185149	Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.	Schizophrenia	201 European ancestry cases, 305 European ancestry controls	2,663 European ancestry cases, 13,780 European ancestry controls	16p12.3	16	20668884	ACSM1	ACSM1			116285			rs433598-T	rs433598	0	433598	intron	0	NR	3E-6	5.522878745280337		   1.13	[NR] 	Affymetrix [572,888]	N
03/25/2010	20185149	Athanasiu L	02/23/2010	J Psychiatr Res	http://www.ncbi.nlm.nih.gov/pubmed/20185149	Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.	Schizophrenia	201 European ancestry cases, 305 European ancestry controls	2,663 European ancestry cases, 13,780 European ancestry controls	10q21.2	10	60325579	ANK3	ANK3			288			rs10761482-?	rs10761482	0	10761482	intron	0	NR	8E-6	5.096910013008055		   1.16	[NR] 	Affymetrix [572,888]	N
03/17/2010	20147318	Qi L	02/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20147318?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genetic variants in ABO blood group region, plasma soluble E-selectin levels and risk of type 2 diabetes.	E-selectin levels	501 European ancestry type 2 diabetes women cases, 504 European ancestry women controls	518 European ancestry women	9q34.2	9	133278431	ABO	ABO - SURF6	28	6838		        3.22	       52.28	rs651007-T	rs651007	0	651007	Intergenic	1	0.22	2E-82	81.69897000433602		   9.71	[NR] % variance explained	Affymetrix [721,316]	N
03/17/2010	20167575	Sun Q	02/22/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20167575	Genome-wide association study identifies polymorphisms in LEPR as determinants of plasma soluble leptin receptor levels.	Soluble leptin receptor levels	684 European ancestry type 2 diabetes women cases, 820 European ancestry women controls	875 European ancestry males	1p31.3	1	65526942	LEPR	LEPR			3953			rs1751492-C	rs1751492	0	1751492	intron	0	0.30	6E-13	12.22184874961636	(Nurses Health Study)	   7.60	[5.64-9.56] % decrease	Affymetrix [2,543,887] (imputed)	N
03/17/2010	20173748	Cho MH	02/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20173748?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Variants in FAM13A are associated with chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	2,940 European ancestry cases, 1,380 European ancestry controls	502 European ancestry cases, 504 European ancestry controls, 1,110 cases, 2,698 controls	4q22.1	4	88962828	FAM13A	FAM13A			10144			rs7671167-?	rs7671167	0	7671167	intron	0	0.48	1E-11	11		   1.32	[1.19-1.47] 	Illumina [499,578]	N
03/17/2010	20173748	Cho MH	02/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20173748?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Variants in FAM13A are associated with chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	2,940 European ancestry cases, 1,380 European ancestry controls	502 European ancestry cases, 504 European ancestry controls, 1,110 cases, 2,698 controls	15q25.1	15	78497146	CHRNA3, CHRNA5, IREB2	IREB2			3658			rs13180-?	rs13180	0	13180	cds-synon	0	0.36	2E-8	7.698970004336018		   1.30	[1.18-1.43] 	Illumina [499,578]	N
03/17/2010	20173748	Cho MH	02/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20173748?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Variants in FAM13A are associated with chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	2,940 European ancestry cases, 1,380 European ancestry controls	502 European ancestry cases, 504 European ancestry controls, 1,110 cases, 2,698 controls	4q31.21	4	144565237	HHIP	GYPA - KRT18P51	2993	391703		      424.49	        7.00	rs13118928-?	rs13118928	0	13118928	Intergenic	1	0.40	5E-7	6.30102999566398		   1.25	[1.14-1.37] 	Illumina [499,578]	N
03/15/2010	20173747	Ellinor PT	02/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20173747?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants in KCNN3 are associated with lone atrial fibrillation.	Atrial fibrillation	1,335 European ancestry cases, 12,844 European ancestry controls	1,164 European ancestry cases, 3,607 European ancestry controls	4q25	4	110796911	PITX2	PITX2 - MIR297	5308	100126354		      154.79	       63.67	rs6843082-G	rs6843082	0	6843082	Intergenic	1	0.26	3E-28	27.52287874528033		   2.03	[1.79-2.30] 	Affymetrix and Illumina [~2.5 million] (imputed)	N
03/15/2010	20173747	Ellinor PT	02/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20173747?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants in KCNN3 are associated with lone atrial fibrillation.	Atrial fibrillation	1,335 European ancestry cases, 12,844 European ancestry controls	1,164 European ancestry cases, 3,607 European ancestry controls	1q21.3	1	154841877	KCNN3	KCNN3			3782			rs13376333-T	rs13376333	0	13376333	intron	0	0.30	2E-21	20.69897000433602		   1.52	[1.40-1.64] 	Affymetrix and Illumina [~2.5 million] (imputed)	N
03/15/2010	20173747	Ellinor PT	02/21/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20173747?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants in KCNN3 are associated with lone atrial fibrillation.	Atrial fibrillation	1,335 European ancestry cases, 12,844 European ancestry controls	1,164 European ancestry cases, 3,607 European ancestry controls	20q13.13	20	47796832	NR	SULF2 - SRMP1	55959	170552		       10.20	       62.88	rs13038095-?	rs13038095	0	13038095	Intergenic	1	NR	2E-7	6.698970004336019		   1.47	[1.39-1.54] 	Affymetrix and Illumina [~2.5 million] (imputed)	N
11/12/2012	20173735	Fellay J	02/21/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20173735	ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C.	Chronic hepatitis C infection	988 European ancestry cases, 198 African American cases, 100 Hispanic cases	NA	20p13	20	3213247	ITPA	ITPA			3704			rs7270101-C	rs7270101	0	7270101	intron	0	0.11	9E-76	75.04575749056066		NR	NR	Illumina [565,759]	N
11/12/2012	20173735	Fellay J	02/21/2010	Nature	http://www.ncbi.nlm.nih.gov/pubmed/20173735	ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C.	Chronic hepatitis C infection	988 European ancestry cases, 198 African American cases, 100 Hispanic cases	NA	20p13	20	3213196	ITPA	ITPA			3704			rs1127354-A	rs1127354	0	1127354	missense	0	0.069	2E-58	57.69897000433602		NR	NR	Illumina [565,759]	N
03/17/2010	20174558	Tsai FJ	02/19/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20174558?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association study identifies susceptibility variants for type 2 diabetes in Han Chinese.	Type 2 diabetes	995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls	1,803 Han Chinese ancestry cases, 1,473 Han Chinese ancestry controls	17p13.3	17	2312964	SRR	SRR			63826			rs391300-G	rs391300	0	391300	intron	0	0.62	3E-9	8.522878745280337		   1.28	[1.18-1.39] 	Illumina [516,737]	N
03/17/2010	20174558	Tsai FJ	02/19/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20174558?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association study identifies susceptibility variants for type 2 diabetes in Han Chinese.	Type 2 diabetes	995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls	1,803 Han Chinese ancestry cases, 1,473 Han Chinese ancestry controls	9p24.1	9	8879118	PTPRD	PTPRD			5789			rs17584499-T	rs17584499	0	17584499	intron	0	0.06	9E-10	9.045757490560675		   1.57	[1.36-1.82] 	Illumina [516,737]	N
03/17/2010	20174558	Tsai FJ	02/19/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20174558?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association study identifies susceptibility variants for type 2 diabetes in Han Chinese.	Type 2 diabetes	995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls	1,803 Han Chinese ancestry cases, 1,473 Han Chinese ancestry controls	11p15.4	11	2835964	KCNQ1	KCNQ1			3784			rs2237895-C	rs2237895	0	2237895	intron	0	0.33	1E-9	8.999999999999998		   1.29	[1.19-1.40] 	Illumina [516,737]	N
03/15/2010	20167578	Barbalic M	02/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20167578?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	1q24.2	1	169594713	SELP	SELP			6403			rs6136-T	rs6136	0	6136	missense	0	NR	4E-61	60.39794000867204	(P-Selectin)	  22.60	[19.86-25.34] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/15/2010	20167578	Barbalic M	02/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20167578?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	1q24.2	1	169611052	SELP	SELP			6403			rs2235302-T	rs2235302	0	2235302	intron	0	NR	4E-16	15.39794000867204	(P-Selectin)	   7.30	[5.54-9.06] % decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/15/2010	20167578	Barbalic M	02/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20167578?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-T	rs579459	0	579459	Intergenic	1	NR	2E-41	40.69897000433602	(P-Selectin)	  14.00	[12.04-15.96] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/15/2010	20167578	Barbalic M	02/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20167578?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	19p13.2	19	10286727	ICAM-1	ICAM1;ICAM4			3383;3386			rs3093030-T	rs3093030	0	3093030	nearGene-3;nearGene-5	0	NR	4E-23	22.39794000867203	(ICAM)	   4.15	[3.33-4.97] % increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/15/2010	20167578	Barbalic M	02/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20167578?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	9q34.2	9	133278860	ABO	ABO - SURF6	28	6838		        3.65	       51.85	rs649129-T	rs649129	0	649129	Intergenic	1	NR	1E-15	15	(ICAM)	   3.95	[2.99-4.91] % decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
03/12/2010	20172861	Okada Y	02/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20172861?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variations in PSMD3-CSF3 and PLCB4 are associated with neutrophil count.	Neutrophil count	5,771 Japanese ancestry individuals	1,894 Japanese ancestry individuals	17q21.1	17	40000459	PSMD3, CSF3	PSMD3 - CSF3	5709	1440		        2.50	       14.90	rs4794822-C	rs4794822	0	4794822	Intergenic	1	0.48	6E-10	9.221848749616356		    .10	[0.07-0.13] unit decrease in log(neutrophil ct)	Illumina [486,091]	N
03/12/2010	20172861	Okada Y	02/18/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20172861?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variations in PSMD3-CSF3 and PLCB4 are associated with neutrophil count.	Neutrophil count	5,771 Japanese ancestry individuals	1,894 Japanese ancestry individuals	20p12.2	20	9384656	PLCB4	PLCB4			5332			rs2072910-C	rs2072910	0	2072910	intron	0	0.30	3E-10	9.522878745280336		    .11	[0.07-0.15] unit decrease in log(neutrophil ct)	Illumina [486,091]	N
03/09/2010	20164292	Koller DL	02/17/2010	J Clin Endocrinol Metab	http://www.ncbi.nlm.nih.gov/pubmed/20164292?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Genome-wide association study of bone mineral density in premenopausal European-American women and replication in African-American women.	Bone mineral density	1,524 European ancestry women from 762 sibships	669 African American women from 383 sibships	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [547,971]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6q16.2	6	99224138	Intergenic	BDH2P1 - FAXC	389416	84553		       46.57	       48.78	rs2132683-?	rs2132683	0	2132683	Intergenic	1	0.33	1E-6	5.999999999999999		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6q15	6	90708033	Intergenic	MAP3K7 - MIR4643	6885	100616174		      120.73	      813.63	rs713155-?	rs713155	0	713155	Intergenic	1	0.40	5E-7	6.30102999566398		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	1p35.1	1	33782463	CSMD2	CSMD2			114784			rs476463-?	rs476463	0	476463	intron	0	0.12	1E-6	5.999999999999999		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	7q31.32	7	122562539	CADPS2	CADPS2			93664			rs2429582-?	rs2429582	0	2429582	intron	0	0.34	6E-7	6.221848749616355		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	3p21.31	3	46298321	Intergenic	CCR3 - UQCRC2P1	1232	100131327		       31.62	       12.07	rs9990343-?	rs9990343	0	9990343	Intergenic	1	0.48	4E-7	6.397940008672037		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	11q23.3	11	116427650	Intergenic	RPL15P15 - BUD13	100128347	84811		      476.85	      320.52	rs490592-?	rs490592	0	490592	Intergenic	1	0.21	1E-6	5.999999999999999		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	20q13.12	20	45495883	WFDC2, SPINT3	RPL5P2 - SPINT3	140749	10816		        4.21	       16.58	rs11696501-?	rs11696501	0	11696501	Intergenic	1	0.19	9E-7	6.045757490560675		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	3p12.1	3	84431917	Intergenic	SRRM1P2 - LINC00971	100420834	440970		      492.88	      206.49	rs10511089-?	rs10511089	0	10511089	Intergenic	1	0.11	7E-7	6.154901959985743		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	8q23.1	8	107777588	Intergenic	PGAM1P13 - RNA5SP275	100129815	100873528		      129.56	      106.91	rs4534106-?	rs4534106	0	4534106	Intergenic	1	0.30	1E-6	5.999999999999999		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6q12	6	66939323	Intergenic	NUFIP1P - RNA5SP208	89761	100873468		      844.38	      527.91	rs11970254-?	rs11970254	0	11970254	Intergenic	1	0.35	6E-7	6.221848749616355		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	9p13.2	9	38041145	SHB	SHB			6461			rs7873102-?	rs7873102	0	7873102	intron	0	0.38	6E-7	6.221848749616355		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	1p36.13	1	19242478	KIAA0090, MRT04, AKR7L	EMC1			23065			rs710865-?	rs710865	0	710865	intron	0	0.38	1E-7	7		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	20p12.1	20	12893937	Intergenic	LOC101929486			101929486			rs2073233-?	rs2073233	0	2073233	intron	0	0.43	1E-6	5.999999999999999		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	2q37.3	2	241563541	BOK, THAP4	BOK			666			rs12479254-?	rs12479254	0	12479254	intron	0	0.40	6E-7	6.221848749616355		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	16p12.1	16	24520397	RBBP6	CACNG3 - RBBP6	10368	5930		      157.98	       19.15	rs11643520-?	rs11643520	0	11643520	Intergenic	1	0.12	6E-7	6.221848749616355		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	5p12	5	44186566	Intergenic	RPL29P12 - FGF10	283412	2255		      519.29	      118.34	rs4296809-?	rs4296809	0	4296809	Intergenic	1	0.15	9E-7	6.045757490560675		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	13q32.2	13	98314063	FARP1	FARP1			10160			rs688872-?	rs688872	0	688872	intron	0	0.38	1E-6	5.999999999999999		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	14q22.1	14	51544081	FRMD6	FRMD6;FRMD6-AS2			122786;100874185			rs7140150-?	rs7140150	0	7140150	intron;intron	0	0.46	5E-7	6.30102999566398		NR	NR	Illumina [448,293]	N
03/23/2010	20171287	Stein JL	02/17/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20171287?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	6p12.3	6	49521195	GLYATL3	GLYATL3			389396			rs9473582-?	rs9473582	0	9473582	intron	0	0.40	8E-7	6.096910013008056		NR	NR	Illumina [448,293]	N
09/25/2013	20064070	Herbeck JT	02/15/2010	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/20064070	Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS.	HIV-1 progression	51 European ancestry rapid progressor males, 57 European ancestry moderate progressor males, 48 European ancestry long-term progressor males	590 European ancestry seroconverter males	1q32.3	1	213951784	PROX1	PROX1-AS1			100505832			rs17762192-G	rs17762192	0	17762192	intron	0	0.59	2E-6	5.698970004336018		   1.45	[NR] 	Affymetrix [345,926]	N
03/09/2010	20154673	Van Deerlin VM	02/14/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20154673?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants at 7p21 are associated with frontotemporal lobar degeneration with TDP-43 inclusions.	Frontotemporal lobar degeneration	515 European ancestry cases, 2,509 European ancestry controls	89 European ancestry cases, 553 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~500,000]	N
03/09/2010	20154341	Lange LA	02/13/2010	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/20154341?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study of homocysteine levels in Filipinos provides evidence for CPS1 in women and a stronger MTHFR effect in young adults.	Homocysteine levels	1,786 Filipino ancestry women	1,679 Filipino ancestry offspring	2q34	2	210675783	CPS1	CPS1			1373			rs7422339-A	rs7422339	1	1047891	missense	0	0.24	5E-9	8.301029995663981		    .05	[0.03-0.07] increase in log(Hcy)	Affymetrix [2,073,674] (imputed)	N
03/07/2010	20159113	Jakkula E	02/12/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20159113?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 342 Other ancestry cases, 1,679 Other ancestry controls, 860 cases, 1,720 controls	17q21.2	17	42362183	STAT3	STAT3			6774			rs744166-G	rs744166	0	744166	intron	0	0.41	3E-10	9.522878745280336		   1.15	[1.10-1.20] 	Illumina [297,343]	N
03/07/2010	20159113	Jakkula E	02/12/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20159113?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 342 Other ancestry cases, 1,679 Other ancestry controls, 860 cases, 1,720 controls	6p21.32	6	32433440	HLA	TRNAI25			100189401			rs3135338-A	rs3135338	0	3135338		0	0.13	2E-25	24.69897000433602		   3.43	[NR] 	Illumina [297,343]	N
03/06/2010	20169177	Yang W	02/12/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20169177?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	314 Chinese ancestry cases, 1,484 Chinese ancestry controls	2,630 Chinese ancestry cases, 2,155 Chinese ancestry controls, 314 Thai ancestry cases, 519 Thai ancestry controls	11q24.3	11	128459064	ETS1	ETS1			2113			rs1128334-A	rs1128334	0	1128334	UTR-3	0	0.35	2E-11	10.69897000433602		   1.29	[1.20-1.39] 	Illumina [514,221]	N
03/06/2010	20169177	Yang W	02/12/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20169177?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	314 Chinese ancestry cases, 1,484 Chinese ancestry controls	2,630 Chinese ancestry cases, 2,155 Chinese ancestry controls, 314 Thai ancestry cases, 519 Thai ancestry controls	10q11.23	10	48817351	WDFY4	WDFY4			57705			rs7097397-G	rs7097397	0	7097397	missense	0	0.28	8E-12	11.09691001300806		   1.30	[1.21-1.40] 	Illumina [514,221]	N
03/06/2010	20150558	He M	02/11/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20150558?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=6	Genome-wide association study identifies variants at the IL18-BCO2 locus associated with interleukin-18 levels.	Interleukin-18 levels	1,523 European ancestry women	435 European ancestry women	11q23.1	11	112180446	BCO2	BCO2			83875			rs2115763-T	rs2115763	0	2115763	intron	0	0.33	4E-9	8.397940008672036		NR	NR	Affymetrix [704,409]	N
03/06/2010	20150558	He M	02/11/2010	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/20150558?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=6	Genome-wide association study identifies variants at the IL18-BCO2 locus associated with interleukin-18 levels.	Interleukin-18 levels	1,523 European ancestry women	435 European ancestry women	11q23.1	11	112153104	BCO2	IL18			3606			rs1834481-G	rs1834481	0	1834481	intron	0	0.24	1E-8	8		NR	NR	Affymetrix [704,409]	N
10/18/2013	20152958	Xing C	02/11/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20152958	A weighted false discovery rate control procedure reveals alleles at FOXA2 that influence fasting glucose levels.	Fasting plasma glucose	2,029 African American individuals, 7,428 European ancestry individuals	1,571 African American individuals, 3,825 European ancestry individuals	20p11.21	20	22587304	FOXA2	FOXA2;LOC101929685			3170;101929685			rs1209523-?	rs1209523	0	1209523	nearGene-5;intron	0	0.043	2E-11	10.69897000433602		NR	NR	Affymetrix [814,004]	N
03/06/2010	20139977	Codd V	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139977?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants near TERC are associated with mean telomere length.	Telomere length	2,917 European ancestry individuals	9,492 European ancestry individuals	3q26.2	3	169763483	TERC	SDHDP3 - TERC	29771	7012		       52.91	        1.13	rs12696304-G	rs12696304	0	12696304	Intergenic	1	0.30	4E-14	13.39794000867204		    .11	[0.08-0.14] unit decrease	Affymetrix [405,649]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-C	rs1260326	0	1260326	missense	0	0.44	4E-9	8.397940008672036	(ALB)	    .09	[0.056-0.114] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	9q34.2	9	133279294	ABO	ABO - SURF6	28	6838		        4.08	       51.41	rs495828-T	rs495828	0	495828	Intergenic	1	0.28	4E-59	58.39794000867203	(ALP)	    .31	[0.27-0.35] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	15q26.2	15	94727238	Intergenic	RPL26P5 - LINC01197	654386	400456		      453.24	      552.05	rs7173947-C	rs7173947	0	7173947	Intergenic	1	0.29	3E-8	7.522878745280337	(ALP)	    .11	[0.068-0.142] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	1p36.12	1	21578036	ALPL	ALPL			249			rs2242420-T	rs2242420	0	2242420	UTR-3	0	0.18	5E-13	12.30102999566398	(ALP)	    .16	[0.12-0.21] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	6p22.3	6	24480067	GPLD1	GPLD1			2822			rs6911965-C	rs6911965	0	6911965	intron	0	0.66	2E-11	10.69897000433602	(ALP)	    .24	[0.17-0.3] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	22q13.31	22	43937814	PNPLA3,SAMM50,PARVB	PNPLA3			80339			rs2896019-G	rs2896019	0	2896019	intron	0	0.45	2E-12	11.69897000433602	(ALT)	    .09	[0.061-0.109] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	12q24.12	12	111672685	BRAP,ALDH2	BRAP			8315			rs3782886-G	rs3782886	0	3782886	cds-synon	0	0.27	5E-9	8.301029995663981	(ALT)	    .08	[0.052-0.106] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	NR			FAM23A,MRC1L1,FAM23B,MRC1	 - 						rs2477664-T	rs2477664					0.44	1E-16		(AST)	    .10	[0.075-0.123] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	22q13.31	22	43937814	PNPLA3,SAMM50,PARVB	PNPLA3			80339			rs2896019-G	rs2896019	0	2896019	intron	0	0.45	2E-12	11.69897000433602	(AST)	    .09	[0.061-0.109] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	3q27.3	3	187969286	Intergenic	BCL6 - LPP-AS2	604	339929		      223.56	      181.92	rs9820070-C	rs9820070	0	9820070	Intergenic	1	0.31	1E-11	11	(BUN)	    .09	[0.062-0.112] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	18q12.3	18	45651657	SLC14A2	SLC14A2			8170			rs4890568-G	rs4890568	0	4890568	intron	0	0.24	2E-10	9.698970004336017	(BUN)	    .09	[0.06-0.114] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	3p14.1	3	66772733	Intergenic	RPL21P41 - KBTBD8	100271159	84541		      135.19	      225.57	rs11709625-A	rs11709625	0	11709625	Intergenic	1	0.17	1E-10	10	(BUN)	    .10	[0.071-0.133] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	12p13.31	12	7538538	CD163	CD163 - GAPDHP31	9332	643739		       34.72	       27.76	rs7136716-G	rs7136716	0	7136716	Intergenic	1	0.39	3E-26	25.52287874528034	(CK)	    .17	[0.13-0.2] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	22q11.23	22	24600663	GGT1	GGT1			2678			rs5751902-T	rs5751902	0	5751902	intron	0	0.37	8E-20	19.09691001300806	(GGT)	    .17	[0.13-0.21] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-A	rs671	0	671	missense	0	0.26	5E-9	8.301029995663981	(GGT)	    .12	[0.082-0.164] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	22q12.3	22	37071230	TMPRSS6	TMPRSS6			164656			rs5756504-T	rs5756504	0	5756504	intron	0	0.45	2E-10	9.698970004336017	(Hb)	    .08	[0.052-0.1] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	9q34.2	9	133279294	ABO	ABO - SURF6	28	6838		        4.08	       51.41	rs495828-T	rs495828	0	495828	Intergenic	1	0.28	1E-11	11	(Hb)	    .09	[0.064-0.114] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	2p21	2	46126027	PRKCE	PRKCE			5581			rs10495928-A	rs10495928	0	10495928	intron	0	0.83	5E-6	5.301029995663981	(Hb)	    .03	[0.018-0.046] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	15q21.3	15	58431280	LIPC	LIPC;LOC102724766			3990;102724766			rs1077834-T	rs1077834	0	1077834	intron;intron	0	0.49	1E-14	14	(HDL)	    .14	[0.1-0.18] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	11q23.3	11	116715567	APOA1,APOC3,APOA4,APOA5	RPL15P15 - BUD13	100128347	84811		      764.77	       32.60	rs7350481-T	rs7350481	0	7350481	Intergenic	1	0.28	9E-10	9.045757490560675	(HDL)	    .12	[0.085-0.163] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.21	5E-29	28.30102999566398	(HDL)	    .25	[0.21-0.3] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-G	rs12678919	0	12678919	Intergenic	1	0.18	9E-6	5.045757490560675	(HDL)	    .13	[0.070-0.180] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.35	1E-10	10	(Ht)	    .08	[0.056-0.104] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	9q34.2	9	133279294	ABO	ABO - SURF6	28	6838		        4.08	       51.41	rs495828-T	rs495828	0	495828	Intergenic	1	0.28	6E-10	9.221848749616356	(Ht)	    .08	[0.056-0.106] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	22q12.3	22	37074184	TMPRSS6	TMPRSS6			164656			rs2413450-T	rs2413450	0	2413450	intron	0	0.59	5E-6	5.301029995663981	(Ht)	    .20	[0.116-0.291] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	15q21.3	15	53648110	WDR72	WDR72			256764			rs10518733-C	rs10518733	0	10518733	intron	0	0.4	2E-8	7.698970004336018	(sCr)	    .07	[0.044-0.092] unit decrease	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	17p11.2	17	16945825	TNFRSF13B	TNFRSF13B			23495			rs4273077-G	rs4273077	0	4273077	intron	0	0.46	3E-10	9.522878745280336	(TP)	    .09	[0.061-0.115] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	19q13.33	19	49496752	RPL13A,RPS11,FCGRT,RCN3	RPS11;SNORD35B			6205;84546			rs2280401-A	rs2280401	0	2280401	intron;nearGene-5	0	0.16	3E-8	7.522878745280337	(TP)	    .11	[0.07-0.144] unit increase	Illumina [561,583]	N
11/05/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NR	2p21	2	46133768	PRKCE	PRKCE			5581			rs10168349-G	rs10168349	0	10168349	intron	0	0.83	5E-7	6.30102999566398	(Ht)	    .32	[0.193-0.44] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	16p13.3	16	175654	HBA2,HBA1,LUC7L,ITFG3,RGS11	HBA1			3039			rs2858942-A	rs2858942	0	2858942	nearGene-5	0	0.46	3E-9	8.522878745280337		    .07	[0.045-0.093] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.35	3E-66	65.52287874528032		    .21	[0.19-0.23] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	9p24.1	9	4844265	RCL1	RCL1			10171			rs2236496-C	rs2236496	0	2236496	intron	0	0.47	6E-11	10.22184874961635		    .08	[0.053-0.101] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	3q29	3	196180782	TFRC,ZDHHC19	LINC00885 - ZDHHC19	401109	131540		       19.89	       16.67	rs4916483-C	rs4916483	0	4916483	Intergenic	1	0.44	4E-11	10.39794000867204		    .08	[0.054-0.102] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-G	rs855791	0	855791	missense	0	0.44	5E-25	24.30102999566398		    .12	[0.098-0.146] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6q24.1	6	139512875	CITED2	CITED2 - ATP5F1P6	10370	645440		      138.23	      101.57	rs632057-G	rs632057	0	632057	Intergenic	1	0.25	1E-9	8.999999999999998		    .08	[0.056-0.106] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	15q22.31	15	65759007	IGDCC4,DPP8,PTPLAD1,C15orf44,SLC24A1,DENND4A	DENND4A			10260			rs6494537-C	rs6494537	0	6494537	intron	0	0.27	3E-9	8.522878745280337		    .08	[0.053-0.103] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	22q13.33	22	50528485	NCAPH2,SCO2,TYMP,KLHDC7B	TYMP			1890			rs470119-T	rs470119	0	470119	intron	0	0.26	4E-8	7.397940008672037		    .07	[0.049-0.099] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	4q12	4	54528005	PDGFRA,HK1	PDGFRA - KIT	5156	3815		      229.76	      129.92	rs218237-T	rs218237	0	218237	Intergenic	1	0.27	3E-25	24.52287874528033		    .14	[0.11-0.16] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	3p24.2	3	24309320	THRB	THRB			7068			rs9310736-A	rs9310736	0	9310736	intron	0	0.26	4E-10	9.397940008672037		    .08	[0.059-0.109] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	1q31.3	1	198626376	ATP6V1G3,PTPRC	ATP6V1G3 - PTPRC	127124	5788		       85.43	       12.59	rs12127588-A	rs12127588	0	12127588	Intergenic	1	0.21	7E-10	9.154901959985741		    .09	[0.061-0.119] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6p21.1	6	41937537	USP49,MED20,BYSL,CCND3	CCND3			896			rs3218097-A	rs3218097	0	3218097	intron	0	0.19	2E-20	19.69897000433602		    .14	[0.11-0.17] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	10q11.23	10	46002468	MSMB,NCOA4,TIMM23	TIMM23			100287932			rs7085433-A	rs7085433	0	7085433	ncRNA	0	0.15	6E-10	9.221848749616356		    .10	[0.071-0.133] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	10q11.21	10	45459616	ALOX5,MARCH8,ANUBL1,FAM21C,AGAP4	MARCH8			220972			rs2279434-T	rs2279434	0	2279434	intron	0	0.12	4E-12	11.39794000867204		    .13	[0.093-0.163] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	6q21	6	109313625	C6orf182,CD164	CCDC162P - RPL7P28	221262	442242		        5.41	       13.55	rs11966072-G	rs11966072	0	11966072	Intergenic	1	0.1	1E-8	8		    .11	[0.072-0.15] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.35	3E-56	55.52287874528033		    .19	[0.17-0.22] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	22q11.21	22	21610472	HIC2,UBE2L3	UBE2L3			7332			rs4821112-A	rs4821112	0	4821112	intron	0	0.47	1E-8	8		    .07	[0.043-0.091] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	20q13.31	20	57416639	RBM38	RBM38 - HMGB1P1	55544	10357		        7.31	       71.30	rs6092477-G	rs6092477	0	6092477	Intergenic	1	0.42	1E-8	8		    .07	[0.044-0.092] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	9p24.1	9	4844265	RCL1	RCL1			10171			rs2236496-C	rs2236496	0	2236496	intron	0	0.47	3E-14	13.52287874528034		    .09	[0.066-0.114] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	3q29	3	196180782	TFRC,ZDHHC19	LINC00885 - ZDHHC19	401109	131540		       19.89	       16.67	rs4916483-C	rs4916483	0	4916483	Intergenic	1	0.44	2E-8	7.698970004336018		    .07	[0.043-0.091] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-G	rs855791	0	855791	missense	0	0.44	1E-15	15		    .10	[0.071-0.119] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6q24.1	6	139512875	CITED2	CITED2 - ATP5F1P6	10370	645440		      138.23	      101.57	rs632057-G	rs632057	0	632057	Intergenic	1	0.25	1E-9	8.999999999999998		    .08	[0.057-0.107] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	8p21.3	8	21963302	DOK2,XPO7	XPO7			23039			rs7843479-A	rs7843479	0	7843479	intron	0	0.29	3E-8	7.522878745280337		    .07	[0.047-0.097] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	4q12	4	54528005	PDGFRA,HK1	PDGFRA - KIT	5156	3815		      229.76	      129.92	rs218237-T	rs218237	0	218237	Intergenic	1	0.27	2E-29	28.69897000433602		    .15	[0.12-0.17] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	3p24.2	3	24309320	THRB	THRB			7068			rs9310736-A	rs9310736	0	9310736	intron	0	0.26	3E-8	7.522878745280337		    .07	[0.049-0.099] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6p21.1	6	41937537	USP49,MED20,BYSL,CCND3	CCND3			896			rs3218097-A	rs3218097	0	3218097	intron	0	0.19	4E-27	26.39794000867203		    .16	[0.13-0.19] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	10q11.23	10	46002468	MSMB,NCOA4,TIMM23	TIMM23			100287932			rs7085433-A	rs7085433	0	7085433	ncRNA	0	0.15	7E-9	8.154901959985743		    .10	[0.064-0.126] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	1q44	1	247882970	TRIM58	TRIM58 - OR2W3	25893	343171		        2.83	       12.62	rs11204538-C	rs11204538	0	11204538	Intergenic	1	0.16	2E-8	7.698970004336018		    .09	[0.060-0.122] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	10q11.21	10	45459616	ALOX5,MARCH8,ANUBL1,FAM21C,AGAP4	MARCH8			220972			rs2279434-T	rs2279434	0	2279434	intron	0	0.12	3E-11	10.52287874528034		    .12	[0.088-0.158] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6q21	6	109313625	C6orf182,CD164	CCDC162P - RPL7P28	221262	442242		        5.41	       13.55	rs11966072-G	rs11966072	0	11966072	Intergenic	1	0.1	3E-8	7.522878745280337		    .11	[0.071-0.149] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	6p22.2	6	26107235	HFE	HIST1H1T			3010			rs198846-A	rs198846	0	198846	nearGene-3	0	0.06	2E-6	5.698970004336018		    .68	[0.402-0.956] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	4q12	4	54541595	KIT	PDGFRA - KIT	5156	3815		      243.35	      116.33	rs172629-C	rs172629	0	172629	Intergenic	1	0.74	1E-27	27		    .70	[0.573-0.824] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet counts	14,806 Japanese ancestry individuals	NA	9p24.1	9	4763176	AK3	AK3 - ECM1P1	50808	100420354		       21.13	        5.45	rs385893-C	rs385893	0	385893	Intergenic	1	0.76	3E-13	12.52287874528034		   5.93	[4.344-7.507] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet counts	14,806 Japanese ancestry individuals	NA	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.34	3E-14	13.52287874528034		    .09	[0.069-0.117] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet counts	14,806 Japanese ancestry individuals	NA	3q27.1	3	184372478	THPO,CHRD	THPO			7066			rs6141-T	rs6141	0	6141	UTR-3	0	0.45	5E-11	10.30102999566398		    .08	[0.052-0.100] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet counts	14,806 Japanese ancestry individuals	NA	6p21.31	6	33580617	BAK1	BAK1			578			rs5745568-T	rs5745568	0	5745568	nearGene-5	0	0.23	7E-11	10.15490195998574		    .09	[0.063-0.117] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet counts	14,806 Japanese ancestry individuals	NA	9p24.1	9	4763176	RCL1	AK3 - ECM1P1	50808	100420354		       21.13	        5.45	rs385893-T	rs385893	0	385893	Intergenic	1	0.25	3E-13	12.52287874528034		    .10	[0.072-0.126] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet counts	14,806 Japanese ancestry individuals	NA	12q24.12	12	111449855	SH2B3	SH2B3			10019			rs739496-A	rs739496	0	739496	UTR-3	0	0.16	5E-19	18.30102999566398		    .14	[0.11-0.17] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet counts	14,806 Japanese ancestry individuals	NA	17p13.2	17	4933086	GP1BA	GP1BA			2811			rs6065-T	rs6065	0	6065	missense	0	0.12	2E-12	11.69897000433602		    .12	[0.089-0.159] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	12p13.32	12	4224753	CCND2	RPL18P9 - CCND2	100129645	894		      104.80	       48.98	rs11611647-C	rs11611647	0	11611647	Intergenic	1	0.37	6E-9	8.221848749616356		    .07	[0.047-0.095] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.35	7E-48	47.15490195998574		    .18	[0.16-0.20] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-G	rs2736100	0	2736100	intron	0	0.4	3E-8	7.522878745280337		    .07	[0.043-0.091] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	9q34.2	9	133279294	ABO	ABO - SURF6	28	6838		        4.08	       51.41	rs495828-T	rs495828	0	495828	Intergenic	1	0.28	3E-12	11.52287874528034		    .09	[0.066-0.116] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	4q12	4	54528005	PDGFRA,HK1	PDGFRA - KIT	5156	3815		      229.76	      129.92	rs218237-T	rs218237	0	218237	Intergenic	1	0.27	2E-17	16.69897000433602		    .11	[0.086-0.136] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	6p21.1	6	41937537	USP49,MED20,BYSL,CCND3	CCND3			896			rs3218097-T	rs3218097	0	3218097	intron	0	0.19	1E-10	10		    .10	[0.068-0.126] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	2p21	2	46126027	PRKCE	PRKCE			5581			rs10495928-G	rs10495928	0	10495928	intron	0	0.17	4E-8	7.397940008672037		    .09	[0.056-0.118] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	6q21	6	109313625	C6orf182,CD164	CCDC162P - RPL7P28	221262	442242		        5.41	       13.55	rs11966072-G	rs11966072	0	11966072	Intergenic	1	0.1	7E-9	8.154901959985743		    .11	[0.075-0.153] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-C	rs1260326	0	1260326	missense	0	0.45	1E-11	11		    .10	[0.072-0.13] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	11q23.3	11	116715567	APOA1,APOC3,APOA4,APOA5	RPL15P15 - BUD13	100128347	84811		      764.77	       32.60	rs7350481-G	rs7350481	0	7350481	Intergenic	1	0.43	1E-49	48.99999999999999		    .24	[0.21-0.27] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-C	rs10889353	0	10889353	intron	0	0.14	2E-9	8.698970004336019		    .13	[0.085-0.167] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	8p21.3	8	19973410	LPL	LPL - RPL30P9	4023	100270981		        6.15	      139.93	rs10096633-T	rs10096633	0	10096633	Intergenic	1	0.12	9E-14	13.04575749056067		    .17	[0.12-0.21] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.53	3E-7	6.522878745280337		    .08	[0.047-0.105] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	7q11.23	7	73450539	MIXIPL	BAZ1B			9031			rs714052-G	rs714052	0	714052	intron	0	0.11	3E-7	6.522878745280337		    .12	[0.076-0.170] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	2q31.1	2	169348336	LRP2	LRP2			4036			rs2544390-C	rs2544390	0	2544390	intron	0	0.49	4E-8	7.397940008672037		    .08	[0.053-0.111] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	4q22.1	4	88133515	ABCG2	ABCG2			9429			rs4148155-G	rs4148155	0	4148155	intron	0	0.3	1E-13	13		    .12	[0.09-0.152] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	4p16.1	4	9914117	SLC2A9	SLC2A9			56606			rs11722228-T	rs11722228	0	11722228	intron	0	0.45	7E-24	23.15490195998574		    .16	[0.13-0.2] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	11q13.1	11	64673448	SLC22A12	NRXN2			9379			rs506338-C	rs506338	0	506338	intron	0	0.17	2E-31	30.69897000433602		    .23	[0.19-0.27] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	0.57	5E-6	5.301029995663981		    .07	[0.040,0.098] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	NR			CDSN,PSORS1C1	 - 						rs3094212-C	rs3094212					0.35	7E-9			    .07	[0.046-0.094] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	17q21.1	17	39987295	GSDMA,PSMD3,CSF3,MED24	PSMD3			5709			rs4065321-T	rs4065321	0	4065321	intron	0	0.32	3E-14	13.52287874528034		    .09	[0.070-0.118] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	6q23.3	6	135105435	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      126.00	       75.88	rs4895441-G	rs4895441	0	4895441	Intergenic	1	0.37	2E-9	8.698970004336019		    .07	[0.049-0.097] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	12q15	12	68567804	RAP1B,NUP107,SLC35E3	RPSAP12 - RAP1B	387867	5908		       13.85	       43.04	rs12313946-C	rs12313946	0	12313946	Intergenic	1	0.47	3E-8	7.522878745280337		    .07	[0.041-0.089] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	7q21.2	7	92779056	CDK6	CDK6			1021			rs445-T	rs445	0	445	intron	0	0.32	2E-8	7.698970004336018		    .07	[0.045-0.095] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	16q24.3	16	88787321	CDT1	FLJ40448 - CDT1	339059	81620		       41.57	       16.46	rs837763-C	rs837763	0	837763	Intergenic	1	0.38	4E-13	12.39794000867204		    .09	[0.064-0.112] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-T	rs7775698	0	7775698	Intergenic	1	0.35	6E-12	11.22184874961635		    .09	[0.061-0.109] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-G	rs855791	0	855791	missense	0	0.44	8E-14	13.09691001300805		    .09	[0.065-0.113] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	12q24.12	12	111803962	ALDH2	ALDH2			217			rs671-A	rs671	0	671	missense	0	0.26	7E-10	9.154901959985741		    .08	[0.058-0.108] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	5p15.33	5	1113129	SLC12A7	SLC12A7			10723			rs4580814-T	rs4580814	0	4580814	nearGene-5	0	0.26	5E-10	9.301029995663981		    .08	[0.058-0.108] unit decrease	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	9q34.2	9	133255935	ABO	ABO			28			rs8176746-T	rs8176746	0	8176746	missense	0	0.18	4E-8	7.397940008672037		    .08	[0.055-0.113] unit increase	Illumina [561,583]	N
09/04/2013	20139978	Kamatani Y	02/07/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20139978?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of hematological and biochemical traits in a Japanese population.	mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	1q22	1	156285665	BGLAP,PAQR6,SMG5,TMEM79,C1orf85,VHLL,CCT3,C1orf182	SMG5;TMEM79			23381;84283			rs6684514-A	rs6684514	0	6684514	intron;missense	0	0.21	3E-9	8.522878745280337		    .09	[0.057-0.115] unit decrease	Illumina [561,583]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	1p34.3	1	37781481	RP11-109P14.2	ACTN4P2 - MANEAL	391026	149175		        1.97	       12.57	rs12117544-?	rs12117544	0	12117544	Intergenic	1	NR	8E-6	5.096910013008055	(Colorword)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	1p13.2	1	112313948	RP5-965F6.2	KCND3-IT1 - TXNP3	100874295	171419		      457.04	       49.25	rs7555668-?	rs7555668	0	7555668	Intergenic	1	NR	3E-6	5.522878745280337	(Symbol Search)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	1q21.2	1	147754660	GJA5	LOC102723321			102723321			rs1891498-?	rs1891498	0	1891498	intron	0	NR	9E-6	5.045757490560675	(Digit Span Forward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	2p25.3	2	315215	AC079779.6	FAM150B - TMEM18	285016	129787		       26.35	      352.76	rs4643574-?	rs4643574	0	4643574	Intergenic	1	NR	5E-6	5.301029995663981	(Digit Span Forward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	2p25.1	2	11080436	AC062028.1	KCNF1 - FLJ33534	3754	285150		      166.21	       19.42	rs6739054-?	rs6739054	0	6739054	Intergenic	1	NR	2E-6	5.698970004336018	(PC1)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	2p24.2	2	18953470	AC092594.1	NT5C1B - FLJ41481	93034	400945		      363.89	       33.76	rs1876040-?	rs1876040	0	1876040	Intergenic	1	NR	6E-8	7.221848749616355	(Digit Span Backward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	2q37.1	2	230555686	AC010149.4	HMGB1P3 - TPM3P8	10356	646839		       39.49	       16.21	rs17275498-?	rs17275498	0	17275498	Intergenic	1	NR	8E-6	5.096910013008055	(COWA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	3q13.2	3	111704282	PHLDB2,PLCXD2	PLCXD2			257068			rs4450776-?	rs4450776	0	4450776	intron	0	NR	5E-6	5.301029995663981	(PC1)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	4q12	4	58142246	Intergenic	SRIP1 - MIR548AG1	6644	100616450		       38.62	     2780.37	rs10517437-?	rs10517437	0	10517437	Intergenic	1	NR	4E-6	5.397940008672037	(Delayed Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	4q21.22	4	82578160	AC067942.6-1	RPS6P6 - LINC00575	728131	439934		       82.23	       34.95	rs7658637-?	rs7658637	0	7658637	Intergenic	1	NR	6E-7	6.221848749616355	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	4	188665925	AC093909.2	LINC01060 - HSPA8P12	401164	100420038		       64.02	       47.72	rs7659062-?	rs7659062	0	7659062	Intergenic	1	NR	8E-6	5.096910013008055	(Delayed Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	4	188665925	AC093909.2	LINC01060 - HSPA8P12	401164	100420038		       64.02	       47.72	rs7659062-?	rs7659062	0	7659062	Intergenic	1	NR	9E-6	5.045757490560675	(Immediate Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	4	188669705	AC093909.2	LINC01060 - HSPA8P12	401164	100420038		       67.80	       43.94	rs7662358-?	rs7662358	0	7662358	Intergenic	1	NR	8E-6	5.096910013008055	(Delayed Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	4q35.2	4	188669705	AC093909.2	LINC01060 - HSPA8P12	401164	100420038		       67.80	       43.94	rs7662358-?	rs7662358	0	7662358	Intergenic	1	NR	9E-6	5.045757490560675	(Immediate Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	5p15.33	5	2335467	AC138982.2	CTD-2194D22.4 - IRX2	101929081	153572		      434.97	      410.70	rs17586674-?	rs17586674	0	17586674	Intergenic	1	NR	5E-6	5.301029995663981	(Colorword)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	5p15.33	5	3939362	AC025187.6	IRX1 - LINC01020	79192	340094		      337.96	     1095.00	rs492478-?	rs492478	0	492478	Intergenic	1	NR	4E-6	5.397940008672037	(Colorword)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	5q23.2	5	126002782	GRAMD3	RPSAP37 - GRAMD3	100270915	65983		       35.28	      357.31	rs13169113-?	rs13169113	0	13169113	Intergenic	1	NR	9E-6	5.045757490560675	(Delayed Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	6q13	6	71772755	RIMS1	KRT19P1 - RIMS1	441160	22999		      186.72	      113.95	rs10455248-?	rs10455248	0	10455248	Intergenic	1	NR	4E-6	5.397940008672037	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	6q15	6	89930772	BACH2	BACH2			60468			rs2289577-?	rs2289577	0	2289577	UTR-3	0	NR	9E-6	5.045757490560675	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	6q16.1	6	92905732	RP11-538A16.1	ATF1P1 - COPS5P1	100128159	135270		       17.67	      186.06	rs2506933-?	rs2506933	0	2506933	Intergenic	1	NR	6E-6	5.221848749616356	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	6q22.31	6	121018033	C6orf170	COX6A1P3 - TBC1D32	100287768	221322		      236.40	       61.46	rs1343075-?	rs1343075	0	1343075	Intergenic	1	NR	2E-6	5.698970004336018	(Immediate Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	7q31.2	7	116937070	AC106873.3	CAPZA2 - RNA5SP239	830	100873497		       17.81	        7.22	rs7782376-?	rs7782376	0	7782376	Intergenic	1	NR	8E-6	5.096910013008055	(Digit Span Forward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8p23.2	8	4625619	Intergenic	CSMD1			64478			rs2616984-?	rs2616984	0	2616984	intron	0	NR	4E-6	5.397940008672037	(Digit Span Backward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8p23.1	8	11419033	C8orf12	C8orf12			83656			rs2002030-?	rs2002030	0	2002030	intron	0	NR	5E-6	5.301029995663981	(Immediate Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8p12	8	30641342	GTF2E2	GTF2E2;SMIM18			2961;100507341			rs2978263-?	rs2978263	0	2978263	intron;intron	0	NR	8E-6	5.096910013008055	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8q13.3	8	72720793	KCNB2	KCNB2			9312			rs2247572-?	rs2247572	0	2247572	intron	0	NR	1E-6	5.999999999999999	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8q21.3	8	89329957	RIPK2	RNA5SP272 - RIPK2	100873525	8767		      933.41	      427.78	rs4397449-?	rs4397449	0	4397449	Intergenic	1	NR	3E-6	5.522878745280337	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8q22.3	8	101932635	NCALD	NCALD			83988			rs517811-?	rs517811	0	517811	intron	0	NR	5E-6	5.301029995663981	(TrailsB)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8q24.23	8	137893053	FAM135B	FLJ45872			401478			rs9657451-?	rs9657451	0	9657451	intron	0	NR	2E-6	5.698970004336018	(Delayed Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	8q24.23	8	138492027	FAM135B	FAM135B			51059			rs11166827-?	rs11166827	0	11166827	intron	0	NR	5E-6	5.301029995663981	(Digit Span Backward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	9q31.2	9	105664781	TAL2	TAL2 - TMEM38B	6887	55151		        1.67	       29.74	rs1463984-?	rs1463984	0	1463984	Intergenic	1	NR	3E-6	5.522878745280337	(Colorword)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	9q33.3	9	124163828	NEK6	LHX2 - NEK6	9355	10783		      130.67	       93.78	rs2807580-?	rs2807580	0	2807580	Intergenic	1	NR	3E-6	5.522878745280337	(Digit Symbol)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	10p12.1	10	24346027	KIAA1217	KIAA1217			56243			rs2484873-?	rs2484873	0	2484873	intron	0	NR	4E-7	6.397940008672037	(Digit Span Backward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	10q25.3	10	114379270	AFAP1L2	AFAP1L2			84632			rs4751674-?	rs4751674	0	4751674	intron	0	NR	4E-6	5.397940008672037	(PC1)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	10q26.2	10	128450662	RP11-264E18.1	LINC01163 - MGMT	101927381	4255		      132.94	     1016.53	rs9804317-?	rs9804317	0	9804317	Intergenic	1	NR	7E-6	5.154901959985742	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	11q14.1	11	80851695	AC018897.4	LOC101928964			101928964			rs11232369-?	rs11232369	0	11232369	intron	0	NR	8E-6	5.096910013008055	(Digit Span Forward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	11q23.3	11	120938751	GRIK4	GRIK4			2900			rs12797755-?	rs12797755	0	12797755	intron	0	NR	8E-6	5.096910013008055	(Digit Span Forward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	12p13.32	12	3804261	PARP11	EFCAB4B - PARP11	84766	57097		       51.06	        4.60	rs2058350-?	rs2058350	0	2058350	Intergenic	1	NR	8E-6	5.096910013008055	(PC1)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	12q14.3	12	64858338	TBC1D30	TBC1D30			23329			rs939876-?	rs939876	0	939876	intron	0	NR	2E-6	5.698970004336018	(TrailsB)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	12q21.1	12	72913802	AC131213.4	CHCHD3P2 - RPL31P48	100422354	645654		      302.48	      734.84	rs10879517-?	rs10879517	0	10879517	Intergenic	1	NR	4E-6	5.397940008672037	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	13q31.1	13	78785289	RP11-600P1.2	RPL21P111 - LINC00331	100271439	100874126		       23.60	        2.03	rs17070284-?	rs17070284	0	17070284	Intergenic	1	NR	3E-6	5.522878745280337	(COWA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	14q21.3	14	48095753	AL358335.4	LINC00648 - RPL18P1	100506433	326291		      300.74	      394.14	rs7151223-?	rs7151223	0	7151223	Intergenic	1	NR	1E-6	5.999999999999999	(Digit Span Forward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	14q21.3	14	50411265	CDKL1	CDKL1			8814			rs1265879-?	rs1265879	0	1265879	intron	0	NR	4E-6	5.397940008672037	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	14q22.1	14	50506914	MAP4K5	MAP4K5			11183			rs17718580-?	rs17718580	0	17718580	intron	0	NR	8E-7	6.096910013008056	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	14q22.1	14	50617517	ATL1,SPG3A	ATL1			51062			rs17122693-?	rs17122693	0	17122693	intron	0	NR	3E-7	6.522878745280337	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	14q22.1	14	50704161	NIN	ZFP64P1			319123			rs8020441-?	rs8020441	0	8020441		0	NR	5E-7	6.30102999566398	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	14q24.3	14	78319816	AC007056.4-3	NRXN3			9369			rs6574433-?	rs6574433	0	6574433	intron	0	NR	6E-6	5.221848749616356	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	15q21.2	15	51060052	TNFAIP8L3	TNFAIP8L3			388121			rs1124769-?	rs1124769	0	1124769	intron	0	NR	9E-6	5.045757490560675	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	15q21.3	15	58343384	LIPC	LOC102724766			102724766			rs4775031-?	rs4775031	0	4775031	nearGene-3	0	NR	2E-6	5.698970004336018	(TrailsB)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	15q23	15	67906573	RNU6-2,RNU6-1	RNU6-1 - PIAS1	26827	8554		       66.53	      147.66	rs448720-?	rs448720	0	448720	Intergenic	1	NR	5E-6	5.301029995663981	(TrailsB)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	15q26.2	15	94968608	MCTP2	RPL26P5 - LINC01197	654386	400456		      694.61	      310.68	rs6496074-?	rs6496074	0	6496074	Intergenic	1	NR	3E-6	5.522878745280337	(TrailsB)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	16q23.3	16	83723723	AC009063.8	CDH13			1012			rs3784962-?	rs3784962	0	3784962	intron	0	NR	3E-6	5.522878745280337	(TrailsB)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	16q23.3	16	83723723	AC009063.8	CDH13			1012			rs3784962-?	rs3784962	0	3784962	intron	0	NR	6E-6	5.221848749616356	(PC1)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	18q12.1	18	29096708	AC105245.4	ARIH2P1 - HSPA9P2	390844	100873903		      443.30	      159.78	rs4145170-?	rs4145170	0	4145170	Intergenic	1	NR	3E-6	5.522878745280337	(Animals)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	19p13.2	19	12114557	CTC-359D24.2	ZNF788			388507			rs17638629-?	rs17638629	0	17638629	ncRNA	0	NR	7E-6	5.154901959985742	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	20p12.3	20	8134057	PLCB1	PLCB1			23236			rs6118083-?	rs6118083	0	6118083	intron	0	NR	7E-6	5.154901959985742	(Colorword)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	20p11.21	20	25038463	ACSS1	ACSS1			84532			rs6050267-?	rs6050267	0	6050267	intron	0	NR	9E-6	5.045757490560675	(Colorword)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	20q13.12	20	44225494	RP5-995J12.2	OSER1-AS1			100505783			rs6017291-?	rs6017291	0	6017291	ncRNA	0	NR	6E-6	5.221848749616356	(Delayed Story Recall)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	21q22.3	21	43025182	PKNOX1	PKNOX1			5316			rs234720-?	rs234720	0	234720	intron	0	NR	2E-7	6.698970004336019	(Digit Span Forward)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	6p22.1	6	30112592	XXbac-BPG250I8.13	TRIM31			11074			rs34704616-?	rs34704616	0	34704616	missense	0	NR	6E-6	5.221848749616356	(Colorword)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	Xq21.31	23	90033228	RP13-140E4.1	TGIF2LX - USP12PX	90316	254700		      110.35	       79.22	rs5941436-?	rs5941436	0	5941436	Intergenic	1	NR	5E-6	5.301029995663981	(TrailsB)	NR	NR	Illumina [up to 563,855]	N
11/13/2012	20125193	Cirulli ET	02/03/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20125193	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American amncestry individuals, up to 74 South Asian ancestry individuals	NA	Xq28	23	149485920	IDS	IDS			3423			rs530501-?	rs530501	0	530501	intron	0	NR	4E-6	5.397940008672037	(TrailsA)	NR	NR	Illumina [up to 563,855]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	18q22.1	18	67618042	DSEL	LOC643542			643542			rs17077540-G	rs17077540	0	17077540	intron	0	0.11	2E-7	6.698970004336019		   1.61	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	21q21.2	21	23770802	Intergenic	TUBAP - VN2R20P	54016	100033408		      361.58	      139.32	rs2828520-G	rs2828520	0	2828520	Intergenic	1	0.31	4E-7	6.397940008672037		   1.35	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	5p13.2	5	38051491	GDNF	GDNF-AS1 - PRDX4P2	100861519	100418942		      175.69	      146.13	rs270545-G	rs270545	0	270545	Intergenic	1	0.69	1E-6	5.999999999999999		   1.37	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	1p13.3	1	109577110	GNAT2, GNAI3, AMPD2	GNAI3			2773			rs6537837-T	rs6537837	0	6537837	intron	0	0.17	1E-6	5.999999999999999		   1.43	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	2p23.2	2	29057895	FAM179A, C2orf71	FAM179A - C2orf71	165186	388939		        5.67	        3.80	rs882632-T	rs882632	0	882632	Intergenic	1	0.29	2E-6	5.698970004336018		   1.34	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	3p14.2	3	61428140	FHIT, PTPRG	FHIT - PTPRG	2272	5793		      176.68	      133.43	rs10514718-C	rs10514718	0	10514718	Intergenic	1	0.94	4E-6	5.397940008672037		   2.12	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	7p15.3	7	21464809	SP4	SP4			6671			rs17144465-G	rs17144465	0	17144465	intron	0	0.04	6E-6	5.221848749616356		   1.82	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	13q21.33	13	70272071	Intergenic	ATXN8OS - MTCL1P1	6315	100288130		      132.32	      651.59	rs9572423-G	rs9572423	0	9572423	Intergenic	1	0.88	9E-6	5.045757490560675		   1.54	 	Affymetrix [671,424]	N
03/02/2010	20125088	Shi J	02/02/2010	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20125088?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	1p13.3	1	109488566	ATXN7L2, SYPL2, CYB561D1	ATXN7L2			127002			rs12049330-G	rs12049330	0	12049330	intron	0	0.14	6E-6	5.221848749616356		   1.44	 	Affymetrix [671,424]	N
09/21/2013	20117844	Brynedal B	02/01/2010	J Neuroimmunol	http://www.ncbi.nlm.nih.gov/pubmed/20117844	MGAT5 alters the severity of multiple sclerosis.	Multiple sclerosis (severity)	1,040 Europeans ancestry cases	873 Europeans ancestry cases	2q21.2	2	134311223	MGAT5	MGAT5			4249			rs4953911-T	rs4953911	0	4953911	intron	0	0.36	2E-7	6.698970004336019		NR	NR	Affymetrix [105,035]	N
03/05/2010	20159242	Li X	02/01/2010	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/20159242?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.	Asthma	607 European ancestry cases, 3,294 European ancestry controls	NA	5q31.1	5	132565533	RAD50	RAD50			10111			rs2244012-C	rs2244012	0	2244012	intron	0	0.21	3E-7	6.522878745280337		   1.64	[1.36-1.97] 	Illumina [292,443]	N
03/05/2010	20159242	Li X	02/01/2010	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/20159242?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.	Asthma	607 European ancestry cases, 3,294 European ancestry controls	NA	15q21.2	15	51677471	SCG3	DMXL2 - SCG3	23312	29106		       54.64	        3.88	rs17525472-?	rs17525472	0	17525472	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [292,443]	N
03/05/2010	20159242	Li X	02/01/2010	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/20159242?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.	Asthma	607 European ancestry cases, 3,294 European ancestry controls	NA	20p13	20	3846662	KIAA1271	MAVS			57506			rs4815617-?	rs4815617	0	4815617	nearGene-5	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [292,443]	N
03/12/2010	20200953	Karasik D	01/29/2010	J Bone Miner Res	http://www.ncbi.nlm.nih.gov/pubmed/20200953	Genome-wide pleiotropy of osteoporosis-related phenotypes: the Framingham Study.	Osteoporosis-related phenotypes	2,073 related women	NA	2q36.1	2	223409904	SCG2	HIGD1AP4 - SCG2	100874435	7857		       11.36	      187.04	rs16864755-?	rs16864755	0	16864755	Intergenic	1	NR	4E-6	5.397940008672037	(Femoral Neck BMD)	    .24	[0.14-0.34] cm3 increase	Affymetrix [433,510]	N
02/28/2010	20101243	Petersen GM	01/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20101243?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=11	A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.	Pancreatic cancer	3,851 cases of European, Chinese or other ancestries, 3,934 controls of European, Chinese or other ancestries	NA	13q22.1	13	73342491	KLF5, KLF12	RNY1P8 - MARK2P12	100873807	100421565		      115.23	       65.30	rs9543325-C	rs9543325	0	9543325	Intergenic	1	0.37	3E-11	10.52287874528034		   1.26	[1.18-1.35] 	Illumina [551,766]	N
02/28/2010	20101243	Petersen GM	01/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20101243?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=11	A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.	Pancreatic cancer	3,851 cases of European, Chinese or other ancestries, 3,934 controls of European, Chinese or other ancestries	NA	1q32.1	1	200038304	NR5A2	NR5A2			2494			rs3790844-T	rs3790844	0	3790844	intron	0	0.76	2E-10	9.698970004336017		   1.30	[1.19-1.41] 	Illumina [551,766]	N
02/28/2010	20101243	Petersen GM	01/24/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20101243?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=11	A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.	Pancreatic cancer	3,851 cases of European, Chinese or other ancestries, 3,934 controls of European, Chinese or other ancestries	NA	5p15.33	5	1321972	CLPTM1L	CLPTM1L			81037			rs401681-T	rs401681	0	401681	intron	0	0.45	7E-7	6.154901959985743		   1.19	[1.11-1.27] 	Illumina [551,766]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	2q36.1[rs10932886];			EPHA4	 - 						rs10932886-?	rs10932886					NR	E		<1 x 10<sup>-6</sup> (multiple phenotypes)	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	19q13.32[rs429358];			APOE	 - 						rs429358-?	rs429358					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	3q28[rs7610017];			TP63	 - 						rs7610017-?	rs7610017					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	7p21.3[rs6463843];			NXPH1	 - 						rs6463843-?	rs6463843					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	19q13.32[rs2075650];			TOMM40	 - 						rs2075650-?	rs2075650					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	10q21.1[rs16912145];			UBE2D1	 - 						rs16912145-?	rs16912145					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	7q35[rs12531488];			LOC643308	 - 						rs12531488-?	rs12531488					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	1p31.3[rs7526034];			LOC199897	 - 						rs7526034-?	rs7526034					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	3p14.1[rs7647307];			LOC642487	 - 						rs7647307-?	rs7647307					NR	NS		NS	NR	NR	Illumina [530,992]	N
02/12/2010	20100581	Shen L	01/22/2010	Neuroimage	http://www.ncbi.nlm.nih.gov/pubmed/20100581?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	4p15.1[rs4692256];			LOC391642	 - 						rs4692256-?	rs4692256					NR	E		<1 x 10<sup>-6</sup> (RHippocampus)	NR	NR	Illumina [530,992]	N
02/10/2010	20096396	Kung AW	01/20/2010	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20096396?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Association of JAG1 with bone mineral density and osteoporotic fractures: a genome-wide association study and follow-up replication studies.	Bone mineral density	785 Han Chinese ancestry extreme high and low BMD women	264 Han Chinese ancestry High BMD individuals, 456 Han Chinese ancestry Low BMD individuals, 3,465 Han Chinese ancestry individuals, 13,913 European ancestry individuals	20p12.2	20	10658895	JAG1	JAG1			182			rs2273061-A	rs2273061	0	2273061	intron	0	0.31	5E-8	7.30102999566398	(lumbar spine)	    .07	[NR] s.d. increase	Illumina [488,853]	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-C	rs560887	0	560887	intron	0	0.70	9E-218	217.0457574905607	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	11q14.3	11	92975544	MTNR1B	MTNR1B			4544			rs10830963-G	rs10830963	0	10830963	intron	0	0.30	6E-175	174.2218487496163	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	7p13	7	44196069	GCK	GCK - YKT6	2645	10652		        6.65	        4.90	rs4607517-A	rs4607517	0	4607517	Intergenic	1	0.16	7E-92	91.15490195998574	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	7p21.2	7	15024684	DGKB, TMEM195	GTF3AP5 - AGMO	100128217	392636		       38.56	      175.63	rs2191349-T	rs2191349	0	2191349	Intergenic	1	0.52	3E-44	43.52287874528033	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-C	rs780094	0	780094	intron	0	0.62	6E-38	37.22184874961636	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	3q21.1	3	123346931	ADCY5	ADCY5			111			rs11708067-A	rs11708067	0	11708067	intron	0	0.78	7E-22	21.15490195998574	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	11p11.2	11	47314769	MADD	MADD			8567			rs7944584-A	rs7944584	0	7944584	intron	0	0.75	2E-18	17.69897000433602	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	10q25.2	10	111282335	ADRA2A	ADRA2A - BTBD7P2	150	100420392		      201.43	       40.44	rs10885122-G	rs10885122	0	10885122	Intergenic	1	0.87	3E-16	15.52287874528034	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	11q12.2	11	61804006	FADS1	FADS1			3992			rs174550-T	rs174550	0	174550	intron	0	0.64	2E-15	14.69897000433602	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	11p11.2	11	45851540	CRY2	CRY2			1408			rs11605924-A	rs11605924	0	11605924	intron	0	0.49	1E-14	14	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	3q26.2	3	170999732	SLC2A2	SLC2A2			6514			rs11920090-T	rs11920090	0	11920090	intron	0	0.87	8E-13	12.09691001300806	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	9p24.2	9	4289050	GLIS3	GLIS3			169792			rs7034200-A	rs7034200	0	7034200	intron	0	0.49	1E-12	12	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	1q32.3	1	213985913	PROX1	PROX1-AS1			100505832			rs340874-C	rs340874	0	340874	intron	0	0.52	7E-12	11.15490195998574	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	15q22.2	15	62141763	C2CD4B	NPM1P47 - C2CD4B	100129972	388125		       58.46	       21.78	rs11071657-A	rs11071657	0	11071657	Intergenic	1	0.63	4E-8	7.397940008672037	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-C	rs560887	0	560887	intron	0	0.70	2E-66	65.698970004336	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	11q14.3	11	92975544	MTNR1B	MTNR1B			4544			rs10830963-G	rs10830963	0	10830963	intron	0	0.30	3E-43	42.52287874528034	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	7p13	7	44196069	GCK	GCK - YKT6	2645	10652		        6.65	        4.90	rs4607517-A	rs4607517	0	4607517	Intergenic	1	0.16	2E-16	15.69897000433602	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	7p21.2	7	15024684	DGKB, TMEM195	GTF3AP5 - AGMO	100128217	392636		       38.56	      175.63	rs2191349-T	rs2191349	0	2191349	Intergenic	1	0.52	3E-17	16.52287874528034	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	3q21.1	3	123346931	ADCY5	ADCY5			111			rs11708067-A	rs11708067	0	11708067	intron	0	0.78	3E-12	11.52287874528034	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	10q25.2	10	111282335	ADRA2A	ADRA2A - BTBD7P2	150	100420392		      201.43	       40.44	rs10885122-G	rs10885122	0	10885122	Intergenic	1	0.87	2E-6	5.698970004336018	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	11q12.2	11	61804006	FADS1	FADS1			3992			rs174550-T	rs174550	0	174550	intron	0	0.64	5E-13	12.30102999566398	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	3q26.2	3	170999732	SLC2A2	SLC2A2			6514			rs11920090-T	rs11920090	0	11920090	intron	0	0.87	5E-6	5.301029995663981	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	9p24.2	9	4289050	GLIS3	GLIS3			169792			rs7034200-A	rs7034200	0	7034200	intron	0	0.49	1E-13	13	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	1q32.3	1	213985913	PROX1	PROX1-AS1			100505832			rs340874-C	rs340874	0	340874	intron	0	0.52	5E-6	5.301029995663981	(HOMA-B)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	8q24.11	8	117173494	SLC30A8	SLC30A8			169026			rs11558471-A	rs11558471	0	11558471	UTR-3	0	0.31	3E-11	10.52287874528034	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	10q25.2	10	112996282	TCF7L2	TCF7L2			6934			rs4506565-T	rs4506565	0	4506565	intron	0	0.31	1E-8	8	(FPG)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-C	rs780094	0	780094	intron	0	0.62	4E-20	19.39794000867203	(FI)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-C	rs780094	0	780094	intron	0	0.62	3E-24	23.52287874528033	(HOMA-IR)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	12q23.2	12	102481791	IGF1	IGF1			3479			rs35767-G	rs35767	0	35767	nearGene-5	0	0.85	3E-8	7.522878745280337	(FI)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting glucose-related traits	up to 46,186 European descent individuals	up to 76,558 European ancestry individuals	12q23.2	12	102481791	IGF1	IGF1			3479			rs35767-G	rs35767	0	35767	nearGene-5	0	0.85	2E-9	8.698970004336019	(HOMA-IR)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting insulin-related traits	up to 38,238 European ancestry individuals	up to 62,264 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-C	rs780094	0	780094	intron	0	0.62	4E-20	19.39794000867203	(FI)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting insulin-related traits	up to 38,238 European ancestry individuals	up to 62,264 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-C	rs780094	0	780094	intron	0	0.62	3E-24	23.52287874528033	(HOMA-IR)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting insulin-related traits	up to 38,238 European ancestry individuals	up to 62,264 European ancestry individuals	12q23.2	12	102481791	IGF1	IGF1			3479			rs35767-G	rs35767	0	35767	nearGene-5	0	0.85	3E-8	7.522878745280337	(FI)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/28/2010	20081858	Dupuis J	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081858?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting insulin-related traits	up to 38,238 European ancestry individuals	up to 62,264 European ancestry individuals	12q23.2	12	102481791	IGF1	IGF1			3479			rs35767-G	rs35767	0	35767	nearGene-5	0	0.85	2E-9	8.698970004336019	(HOMA-IR)	NR	NR	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/08/2010	20081856	McMahon FJ	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081856?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Meta-analysis of genome-wide association data identifies a risk locus for major mood disorders on 3p21.1.	Major mood disorders	6,686 European ancestry cases, 9,068 European ancestry controls	1,930 European ancestry cases, 2,747 European ancestry controls	3p21.1	3	52550771	PBRM1	PBRM1			55193			rs2251219-?	rs2251219	0	2251219	cds-synon	0	0.59	2E-9	8.698970004336019		   1.14	[1.09-1.18] 	Affymetrix, Illumina and Perlegen [~2.1 million] (imputed)	N
02/08/2010	20081857	Saxena R	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081857?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	NR	3E-10	9.522878745280336		    .07	[0.05-0.09] mmol/L increase	Affymetrix & Illumina [NR]	N
02/08/2010	20081857	Saxena R	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081857?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	3q21.1	3	123375604	ADCY5	ADCY5			111			rs2877716-C	rs2877716	0	2877716	intron	0	NR	7E-16	15.15490195998574		    .09	[0.07-0.11] mmol/L increase	Affymetrix & Illumina [NR]	N
02/08/2010	20081857	Saxena R	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081857?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	10q25.2	10	113029056	TCF7L2	TCF7L2			6934			rs12243326-C	rs12243326	0	12243326	intron	0	NR	1E-7	7		    .08	[0.06-0.10] mmol/L increase	Affymetrix & Illumina [NR]	N
02/08/2010	20081857	Saxena R	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081857?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	15q22.2	15	62040781	VPS13C	VPS13C			54832			rs17271305-G	rs17271305	0	17271305	intron	0	NR	1E-7	7		    .06	 [0.04-0.08 mmol/L increase	Affymetrix & Illumina [NR]	N
02/08/2010	20081857	Saxena R	01/17/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20081857?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	19q13.32	19	45679046	GIPR	GIPR			2696			rs10423928-A	rs10423928	0	10423928	intron	0	NR	3E-12	11.52287874528034		    .09	[0.07-0.11] mmol/L increase	Affymetrix & Illumina [NR]	N
02/05/2010	20070850	Edwards TL	01/13/2010	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20070850?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	17q21.31	17	45436075	PLEKHM1, MAPT, IMP5	PLEKHM1			9842			rs11012-T	rs11012	0	11012	ncRNA	0	NR	6E-8	7.221848749616355		   1.43	[1.27-1.61] 	Illumina [495,715] (imputed)	N
02/05/2010	20070850	Edwards TL	01/13/2010	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20070850?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	4q22.1	4	89757390	SNCA	SNCA			6622			rs2736990-?	rs2736990	0	2736990	intron	0	NR	7E-8	7.154901959985742		   1.29	[1.18-1.43] 	Illumina [495,715] (imputed)	N
02/05/2010	20070850	Edwards TL	01/13/2010	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20070850?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	1p36.13	1	18813023	TAS1R2	PAX7 - TAS1R2	5081	80834		       64.16	       26.58	rs12063142-?	rs12063142	0	12063142	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Illumina [495,715] (imputed)	N
02/05/2010	20070850	Edwards TL	01/13/2010	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20070850?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	9q33.1	9	119297431	DBC1	BRINP1			1620			rs4837628-A	rs4837628	0	4837628	intron	0	NR	1E-6	5.999999999999999		   1.27	[1.15-1.39] 	Illumina [495,715] (imputed)	N
02/05/2010	20070850	Edwards TL	01/13/2010	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20070850?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	4p16.3	4	970571	DGKQ	DGKQ			1609			rs11248060-?	rs11248060	0	11248060	intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [495,715] (imputed)	N
02/05/2010	20070850	Edwards TL	01/13/2010	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20070850?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	5q35.3	5	180367208	NR	GFPT2 - CNOT6	9945	57472		       13.87	      127.02	rs10464059-A	rs10464059	0	10464059	Intergenic	1	NR	3E-6	5.522878745280337		   1.33	[1.19-1.52] 	Illumina [495,715] (imputed)	N
02/04/2010	20068591	Van Laer L	01/13/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20068591?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	A genome-wide association study for age-related hearing impairment in the Saami.	Hearing impairment	347 Finnish Saami individuals	NA	6q22.33	6	128171037	NR	PTPRK			5796			rs10499138-A	rs10499138	0	10499138	intron	0	0.25	2E-6	5.698970004336018	(PC2)	NR	NR	Affymetrix [83,381]	N
02/04/2010	20068591	Van Laer L	01/13/2010	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20068591?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	A genome-wide association study for age-related hearing impairment in the Saami.	Hearing impairment	347 Finnish Saami individuals	NA	5q13.3	5	76625147	IQGAP2	F2RL2;IQGAP2			2151;10788			rs457717-T	rs457717	0	457717	nearGene-5;intron	0	0.25	4E-7	6.397940008672037	(PC3)	NR	NR	Affymetrix [83,381]	N
02/02/2010	20066004	Chung CM	01/12/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20066004?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study identifies new loci for ACE activity: potential implications for response to ACE inhibitor.	Angiotensin-converting enzyme activity	400 Han Chinese ancestry hypertensive cases	623 Han Chinese ancestry hypertensive cases	17q23.3	17	63488670	ACE	ACE			1636			rs4343-G	rs4343	0	4343	cds-synon	0	0.31	3E-25	24.52287874528033		  16.20	[NR] % variance	Illumina [~550,000]	N
02/02/2010	20066004	Chung CM	01/12/2010	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/20066004?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study identifies new loci for ACE activity: potential implications for response to ACE inhibitor.	Angiotensin-converting enzyme activity	400 Han Chinese ancestry hypertensive cases	623 Han Chinese ancestry hypertensive cases	9q34.2	9	133279294	ABO	ABO - SURF6	28	6838		        4.08	       51.41	rs495828-A	rs495828	0	495828	Intergenic	1	0.17	3E-8	7.522878745280337		   4.90	[NR] % variance	Illumina [~550,000]	N
01/29/2010	20062061	Chambers JC	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062061?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genetic variation in SCN10A influences cardiac conduction.	Electrocardiographic traits	6,543 Indian Asian ancestry individuals	6,243 Indian Asian ancestry individuals, 5,370 European ancestry individuals	3p22.2	3	38725184	SCN10A	SCN10A			6336			rs6795970-A	rs6795970	0	6795970	missense	0	0.36	3E-15	14.52287874528034	(PR interval)	   3.33	[2.51-4.15] ms increase	Illumina [303,309]	N
01/29/2010	20062061	Chambers JC	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062061?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genetic variation in SCN10A influences cardiac conduction.	Electrocardiographic traits	6,543 Indian Asian ancestry individuals	6,243 Indian Asian ancestry individuals, 5,370 European ancestry individuals	1q23.3	1	162115519	NOS1AP	NOS1AP			9722			rs1415259-A	rs1415259	0	1415259	intron	0	0.39	7E-10	9.154901959985741	(QTc interval)	   2.53	[1.73-3.33] ms decrease	Illumina [303,309]	N
01/29/2010	20062061	Chambers JC	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062061?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genetic variation in SCN10A influences cardiac conduction.	Electrocardiographic traits	6,543 Indian Asian ancestry individuals	6,243 Indian Asian ancestry individuals, 5,370 European ancestry individuals	7q36.1	7	150940775	KCNH2	AOC1 - KCNH2	26	3757		       79.48	        4.18	rs4725982-A	rs4725982	0	4725982	Intergenic	1	NR	3E-6	5.522878745280337	(QTc interval)	   2.08	[1.20-2.96] ms increase	Illumina [303,309]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	3	38725184	SCN10A	SCN10A			6336			rs6795970-A	rs6795970	0	6795970	missense	0	0.36	1E-58	57.99999999999999	(PR interval)	  14.81	[13.01-16.60] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	4q21.23	4	85730311	ARHGAP24	ARHGAP24			83478			rs7660702-T	rs7660702	0	7660702	intron	0	0.74	3E-17	16.52287874528034	(PR interval)	   8.46	[6.50-10.42] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	3	38725184	SCN10A	SCN10A			6336			rs6795970-A	rs6795970	0	6795970	missense	0	0.36	4E-9	8.397940008672036	(QRS duration)	   5.17	[3.46-6.89] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	6p21.2	6	36655123	CDKN1A	TRNAI25			100189401			rs1321311-T	rs1321311	0	1321311		0	0.21	3E-10	9.522878745280336	(QRS duration)	   6.52	[4.50-8.55] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	7q31.2	7	116546187	CAV1	CAV1			857			rs3807989-A	rs3807989	0	3807989	intron	0	0.40	7E-13	12.15490195998574	(PR interval)	   6.40	[4.65-8.15] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	10q21.1	10	52464217	DKK1	PRKRIRP3 - MBL2	399774	4153		       50.72	      296.64	rs1733724-T	rs1733724	0	1733724	Intergenic	1	0.21	7E-8	7.154901959985742	(QRS duration)	   5.62	[3.58-7.66] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	12q24.21	12	114357638	TBX5	TBX5			6910			rs3825214-G	rs3825214	0	3825214	intron	0	0.22	3E-13	12.52287874528034	(QRS duration)	   7.35	[5.37-9.33] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	14q11.2	14	23392602	MYH6	MYH6			4624			rs365990-G	rs365990	0	365990	missense	0	0.34	9E-11	10.04575749056067	(HR)	   5.25	[3.66-6.83] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	12q24.21	12	114357638	TBX5	TBX5			6910			rs3825214-G	rs3825214	0	3825214	intron	0	0.22	3E-12	11.52287874528034	(PR interval)	   7.36	[5.29-9.43] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	12q24.21	12	114357638	TBX5	TBX5			6910			rs3825214-G	rs3825214	0	3825214	intron	0	0.22	1E-7	7	(QT interval)	   5.88	[3.72-8.03] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	1q23.3	1	162115895	NOS1AP	NOS1AP			9722			rs10494366-G	rs10494366	0	10494366	intron	0	0.39	5E-22	21.30102999566398	(QT interval)	  12.20	[9.72-14.68] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	3	38547672	SCN5A	SCN5A			6331			rs11129795-G	rs11129795	0	11129795	nearGene-3	0	0.77	5E-10	9.301029995663981	(QRS complex)	   8.24	[5.64-10.83] % s.d. decrease	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	3	38551902	SCN5A	SCN5A			6331			rs12053903-T	rs12053903	0	12053903	intron	0	0.72	1E-7	7	(PR interval)	   6.59	[4.16-9.03] % s.d. decrease	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	6q22.31	6	118359211	C6orf204	RPL29P4 - CEP85L	387101	387119		      359.63	      101.56	rs11970286-T	rs11970286	0	11970286	Intergenic	1	0.54	8E-7	6.096910013008056	(QT interval)	   6.19	[3.73-8.65] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	7q36.1	7	150970122	KCNH2	KCNH2			3757			rs3807375-T	rs3807375	0	3807375	intron	0	0.35	5E-11	10.30102999566398	(QT interval)	  11.95	[8.39-15.51] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	11p15.5	11	2468112	KCNQ1	KCNQ1			3784			rs12296050-T	rs12296050	0	12296050	intron	0	0.15	8E-11	10.09691001300805	(QT interval)	  13.16	[9.19-17.12] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	16q21	16	58533334	NDRG4	CNOT1			23019			rs37062-A	rs37062	0	37062	intron	0	0.72	1E-6	5.999999999999999	(QT interval)	   6.09	[3.62-8.57] % s.d. increase	Illumina [306,060]	N
02/02/2010	20062063	Holm H	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062063?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	21q22.12	21	34507774	KCNE1	KCNE1			3753			rs727957-T	rs727957	0	727957	intron	0	0.19	2E-12	11.69897000433602	(QT interval)	  11.70	[8.46-14.94] % s.d. increase	Illumina [306,060]	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	2p14	2	66544868	MEIS1	MEIS1			4211			rs11897119-C	rs11897119	0	11897119	intron	0	0.39	5E-11	10.30102999566398		   1.36	[0.95-1.77] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	3p22.2	3	38592432	SCN5A	SCN5A			6331			rs11708996-C	rs11708996	0	11708996	intron	0	0.15	6E-26	25.22184874961635		   3.04	[2.47-3.61] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	3p22.2	3	38733341	SCN10A	SCN10A			6336			rs6800541-C	rs6800541	0	6800541	intron	0	0.40	2E-74	73.69897000433602		   3.77	[3.37-4.17] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	4q21.23	4	85719996	ARHGAP24	ARHGAP24			83478			rs7692808-A	rs7692808	0	7692808	intron	0	0.31	6E-20	19.22184874961636		   2.01	[1.58-2.44] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	5q35.1	5	173053333	NKX2-5, C5orf41	SNORA74B - CREBRF	677841	153222		       32.40	        3.02	rs251253-C	rs251253	0	251253	Intergenic	1	0.40	9E-13	12.04575749056067		   1.49	[1.08-1.90] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	7q31.2	7	116546187	CAV1, CAV2	CAV1			857			rs3807989-A	rs3807989	0	3807989	intron	0	0.40	4E-28	27.39794000867203		   2.30	[1.89-2.71] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	11q13.5	11	76198575	WNT11	WNT11			7481			rs4944092-G	rs4944092	0	4944092	intron	0	0.32	3E-8	7.522878745280337		   1.19	[0.77-1.61] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	12p12.1	12	24635405	SOX5, C12orf67	KNOP1P1 - RPL21P102	100129937	100271432		       50.29	        7.25	rs11047543-A	rs11047543	0	11047543	Intergenic	1	0.15	3E-13	12.52287874528034		   2.09	[1.53-2.65] ms decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/04/2010	20062060	Pfeufer A	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062060?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	12q24.21	12	114908619	TBX5, TBX3	TBX3 - UBA52P7	6926	100128617		      224.46	      683.99	rs1896312-C	rs1896312	0	1896312	Intergenic	1	0.28	3E-17	16.52287874528034		   1.95	[1.50-2.40] ms increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-?	rs11209026	0	11209026	missense	0	0.94	9E-14	13.04575749056067		   1.89	[1.56-2.27] 	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	2p15	2	62324337	B3GNT2	MIR5192 - TMEM17	100847087	200728		      118.42	      136.56	rs10865331-A	rs10865331	0	10865331	Intergenic	1	0.40	2E-19	18.69897000433602		   1.27	[1.18-1.37] 	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	2q11.2	2	102047167	IL1R2	IL1R2 - IL1R1	7850	3554		       18.74	       23.21	rs2310173-A	rs2310173	0	2310173	Intergenic	1	0.45	5E-7	6.30102999566398		   1.18	[1.10-1.27] 	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	4q21.21	4	80028675	ANTXR2	ANTXR2			118429			rs4333130-?	rs4333130	0	4333130	intron	0	0.64	9E-8	7.045757490560674		   1.22	[1.12-1.32] 	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	5q15	5	96793809	ERAP1	ERAP1			51752			rs27434-A	rs27434	0	27434	cds-synon	0	0.23	5E-12	11.30102999566398		   1.19	[1.10-1.30] 	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	6p21.33	6	31368323	MHC	TRNAI25			100189401			rs7743761-?	rs7743761	0	7743761		0	NR	5E-304	303.301029995664		NR	NR	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	21q22.2	21	39093252	PSMG1	RPSAP64 - RPL23AP12	100873797	391282		      198.06	       34.30	rs2242944-?	rs2242944	0	2242944	Intergenic	1	0.63	8E-20	19.09691001300806		   1.39	[1.28-1.49] 	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	2q31.3	2	181143073	NR	LOC101927156			101927156			rs1018326-C	rs1018326	0	1018326	intron	0	0.45	2E-6	5.698970004336018		   1.24	[1.15-1.33] 	Illumina [288,662]	N
02/02/2010	20062062	Reveille JD	01/10/2010	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20062062?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	10p12.31	10	19640584	NR	MALRD1			340895			rs1326986-C	rs1326986	0	1326986	intron	0	0.05	4E-6	5.397940008672037		   1.90	[1.58-2.29] 	Illumina [288,662]	N
01/28/2010	20072603	Guo Y	01/08/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20072603?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study identifies ALDH7A1 as a novel susceptibility gene for osteoporosis.	Osteoporosis	350 Han Chinese ancestry cases, 350 Han Chinese ancestry controls	390 Han Chinese ancestry cases, 516 Han Chinsese ancestry controls	5q23.2	5	126582456	ALDH7A1	ALDH7A1			501			rs13182402-G	rs13182402	0	13182402	intron	0	0.05	2E-9	8.698970004336019		   2.25	[1.72-2.94] 	Affymetrix [281,533]	N
01/21/2010	20066028	Igl W	01/08/2010	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20066028?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Modeling of environmental effects in genome-wide association studies identifies SLC2A2 and HP as novel loci influencing serum cholesterol levels.	Cholesterol	656 European ancestry individuals	Up to 3,282 European ancestry individuals	16q13	16	56971567	CETP	CETP			1071			rs1532624-?	rs1532624	0	1532624	intron	0	NR	3E-20	19.52287874528034		   9.99	[NR] mg/dl increase between hmz	Illumina [~311,388]	N
02/28/2010	20112360	Kerkhof HJ	01/07/2010	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/20112360?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association study identifies an osteoarthritis susceptibility locus on chromosome 7q22.	Osteoarthritis	1,341 European ancestry cases, 3,496 European ancestry controls	9,779 European ancestry cases, up to 31,818 European ancestry controls, 1,861 Other ancestry cases, 5,536 Other ancestry controls, 1,957 cases, 1,742 controls	7q22.3	7	107297975	COG5	COG5			10466			rs3815148-C	rs3815148	0	3815148	intron	0	0.23	8E-8	7.096910013008055		   1.14	[1.09-1.19] 	Illumina [500,510]	N
01/21/2010	20060832	Rauch A	01/07/2010	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/20060832?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study.	Chronic hepatitis C infection	1,015 European ancestry chronic HCV carriers, 347 European ancestry spontaneously cleared HCV individuals	NA	19q13.2	19	39252525	IL28B, IL28A, IL29	IFNL4 - MSRB1P1	101180976	441849		        3.67	        2.39	rs8099917-G	rs8099917	0	8099917	Intergenic	1	0.24	6E-9	8.221848749616356		   2.31	[1.74-3.06] 	Illumina [~500,000]	N
03/17/2010	20215924	Liu X	01/01/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20215924	A genome-wide association study of amygdala activation in youths with and without bipolar disorder.	Functional MRI	36 European ancestry BD cases, 1 African American BD case, 2 Other ancestry BD cases, 21 European ancestry controls, 5 African American controls, 3 Other ancestry controls	NA	20q13.2	20	54650572	DOK5	DOK5			55816			rs2023454-?	rs2023454	0	2023454	UTR-3	0	NR	5E-7	6.30102999566398	(hostility, right amygdala)	    .22	[NR] % variance explained	Illumina [104,043]	N
03/17/2010	20215924	Liu X	01/01/2010	J Am Acad Child Adolesc Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20215924	A genome-wide association study of amygdala activation in youths with and without bipolar disorder.	Functional MRI	36 European ancestry BD cases, 1 African American BD case, 2 Other ancestry BD cases, 21 European ancestry controls, 5 African American controls, 3 Other ancestry controls	NA	19q13.11	19	34275683	KIAA0355	KIAA0355			9710			rs10407640-?	rs10407640	0	10407640	intron	0	NR	7E-6	5.154901959985742	(hostility, left amygdala)	    .31	[NR] % variance explained	Illumina [104,043]	N
01/19/2010	20009918	Shrestha S	01/01/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/20009918?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	7q31.33	7	126684537	GRM8	GRM8			2918			rs17691394-G	rs17691394	0	17691394	intron	0	0.20	9E-7	6.045757490560675	(common cIMT)	NR	NR	Illumina [311,194]	N
01/19/2010	20009918	Shrestha S	01/01/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/20009918?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	5q34	5	165636879	Intergenic	RPS15P6 - RPL21P59	391845	100271174		     1035.41	      268.21	rs958994-G	rs958994	0	958994	Intergenic	1	0.27	8E-6	5.096910013008055	(common cIMT)	NR	NR	Illumina [311,194]	N
01/19/2010	20009918	Shrestha S	01/01/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/20009918?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	15q14	15	33613209	RYR3	RYR3			6263			rs2229116-G	rs2229116	0	2229116	missense	0	0.18	3E-8	7.522878745280337	(common cIMT)	NR	NR	Illumina [311,194]	N
01/19/2010	20009918	Shrestha S	01/01/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/20009918?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	22q12.2	22	29451733	RFPL1, AP1B1, THOC5, NF2	RFPL1 - NEFH	5988	4744		        9.28	       28.46	rs13053817-A	rs13053817	0	13053817	Intergenic	1	0.18	2E-6	5.698970004336018	(common cIMT)	NR	NR	Illumina [311,194]	N
01/19/2010	20009918	Shrestha S	01/01/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/20009918?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	5q12.3	5	67156347	MAST4	MAST4			375449			rs1697137-C	rs1697137	0	1697137	intron	0	0.36	2E-6	5.698970004336018	(internal cIMT)	NR	NR	Illumina [311,194]	N
01/19/2010	20009918	Shrestha S	01/01/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/20009918?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	7p15.2	7	25568789	Intergenic	NPVF - UBA52P1	64111	7312		      340.30	      120.61	rs17151904-A	rs17151904	0	17151904	Intergenic	1	0.20	1E-6	5.999999999999999	(internal cIMT)	NR	NR	Illumina [311,194]	N
01/19/2010	20009918	Shrestha S	01/01/2010	AIDS	http://www.ncbi.nlm.nih.gov/pubmed/20009918?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	10q23.1	10	81393490	Intergenic	RPA2P2 - NRG3	389990	10718		      256.17	      481.82	rs588517-A	rs588517	0	588517	Intergenic	1	0.15	8E-6	5.096910013008055	(internal cIMT)	NR	NR	Illumina [311,194]	N
01/19/2010	20044523	Debette S	12/31/2009	Stroke	http://www.ncbi.nlm.nih.gov/pubmed/20044523?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association studies of MRI-defined brain infarcts: meta-analysis from the CHARGE Consortium.	Subclinical brain infarct	9,401 European ancestry individuals	1,822 European ancestry individuals, 644 black individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix & Illumina [2,217,889] (imputed)	N
08/30/2010	20045101	Ferreira MA	12/31/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20045101	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	6	31284619	HLA-B	TRNAI25			100189401			rs2524054-A	rs2524054	0	2524054		0	0.32	2E-28	27.69897000433602	(CD4:CD8)	    .37	[0.31-0.43] SD increase	Illumina [529,721]	N
08/30/2010	20045101	Ferreira MA	12/31/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20045101	Quantitative trait loci for CD4:CD8 lymphocyte ratio are associated with risk of type 1 diabetes and HIV-1 immune control.	CD4:CD8 lymphocyte ratio	2,538 European ancestry twins from 1,089 families	988 individuals from 550 families	6p21.33	6	31284619	HLA-B	TRNAI25			100189401			rs2524054-A	rs2524054	0	2524054		0	0.32	6E-21	20.22184874961635	(CD8)	    .31	[0.25-0.37] SD decrease	Illumina [529,721]	N
01/19/2010	20038948	Papassotiropoulos A	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038948?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide survey of human short-term memory.	Memory (short-term)	333 European ancestry individuals	777 young European ancestry individuals, 922 elderly European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [841,663]	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	8p21.3	8	20208538	ATP6V1B2, SLC18A1, LZTS1	ATP6V1B2			526			rs1106634-A	rs1106634	0	1106634	intron	0	0.14	7E-7	6.154901959985743		   1.30	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	7p15.3	7	21464809	SP4	SP4			6671			rs17144465-G	rs17144465	0	17144465	intron	0	0.03	8E-7	6.096910013008056		   1.56	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	3p26.1	3	7487868	GRM7	GRM7			2917			rs9870680-T	rs9870680	0	9870680	intron	0	0.44	1E-6	5.999999999999999		   1.19	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	7q32.3	7	131215362	AK294384	MKLN1			4289			rs10265216-A	rs10265216	0	10265216	intron	0	0.28	3E-6	5.522878745280337		   1.19	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	3q26.32	3	177573909	NR	LINC00578			100505566			rs644695-A	rs644695	0	644695	intron	0	0.88	5E-6	5.301029995663981		   1.35	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	2p14	2	67715348	BC043421	ETAA1 - C1D	54465	10438		      304.94	      326.85	rs724568-C	rs724568	0	724568	Intergenic	1	0.36	5E-6	5.301029995663981		   1.17	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	Xq21.33	23	95824871	NR	RPS7P13 - RPS29P28	100130435	100271402		      145.14	      370.61	rs5990417-T	rs5990417	0	5990417	Intergenic	1	0.83	6E-6	5.221848749616356		   1.23	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	6p25.1	6	6612234	LY86	LY86;LY86-AS1			9450;285780			rs2326810-G	rs2326810	0	2326810	intron;intron	0	0.92	7E-6	5.154901959985742		   1.41	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/19/2010	20038947	Shyn SI	12/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/20038947?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	10p12.1	10	29002969	NR	RPL21P93 - LYZL1	653665	84569		      103.45	      286.08	rs1612122-T	rs1612122	0	1612122	Intergenic	1	0.48	7E-6	5.154901959985742		   1.17	[NR] 	Affymetrix and Perlegen [2,391,203] (imputed)	N
01/13/2010	20037589	Illig T	12/27/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20037589	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	11q12.2	11	61803311	FADS1	FADS1			3992			rs174547-C	rs174547	0	174547	intron	0	0.30	7E-179	178.1549019599857	(PC aa C36:3/PC aa C36:4)	  36.30	[NR] % variance explained	Illumina [517,480]	N
01/13/2010	20037589	Illig T	12/27/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20037589	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	12q24.31	12	120737721	ACADS	ACADS			35			rs2014355-T	rs2014355	0	2014355	intron	0	0.28	5E-96	95.30102999566397	(C3/C4)	  21.50	[NR] % variance explained	Illumina [517,480]	N
01/13/2010	20037589	Illig T	12/27/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20037589	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	1p31.1	1	75640990	ACADM	RPL29P5 - ACADM	646417	34		       58.32	       83.36	rs211718-C	rs211718	0	211718	Intergenic	1	0.31	1E-63	62.99999999999999	(C12/C10)	  14.60	[NR] % variance explained	Illumina [517,480]	N
01/13/2010	20037589	Illig T	12/27/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20037589	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	2q34	2	210195326	ACADL	ACADL			33			rs2286963-T	rs2286963	0	2286963	missense	0	0.37	3E-60	59.52287874528033	(C9/C10:2)	  13.80	[NR] % variance explained	Illumina [517,480]	N
01/13/2010	20037589	Illig T	12/27/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20037589	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	4q32.1	4	158709665	ETFDH	PPID			5481			rs8396-T	rs8396	0	8396	UTR-3	0	0.30	4E-24	23.39794000867204	(C14:1-OH/C10)	   5.60	[NR] % variance explained	Illumina [517,480]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	31464003	HCP5, HLA-B	HCP5			10866			rs2395029-G	rs2395029	0	2395029	ncRNA	0	0.048	5E-35	34.30102999566398	(setpoint)	   5.80	[NR] % increase	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	31306603	HLA-C	TRNAI25			100189401			rs9264942-C	rs9264942	0	9264942		0	0.412	6E-32	31.22184874961635	(setpoint)	   5.30	[NR] % increase	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	6	30057726	C6orf12, ZNRD1	ZNRD1-AS1			80862			rs259919-?	rs259919	0	259919	intron	0	NR	3E-7	6.522878745280337	(setpoint)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	6	30152113	TRIM10	TRIM10			10107			rs9468692-?	rs9468692	0	9468692	UTR-3	0	NR	1E-6	5.999999999999999	(setpoint)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	31306603	HLA-C	TRNAI25			100189401			rs9264942-?	rs9264942	0	9264942		0	NR	6E-12	11.22184874961635	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	31464003	HCP5, HLA-B	HCP5			10866			rs2395029-?	rs2395029	0	2395029	ncRNA	0	NR	1E-11	11	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p22.1	6	30002812	ZNRD1, RNF39, HLA-A	ZNRD1-AS1			80862			rs7758512-?	rs7758512	0	7758512	intron	0	NR	2E-8	7.698970004336018	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	4q32.1	4	160585745	Intergenic	MIR3688-2 - RPS14P7	100616303	100271065		     1456.85	      232.68	rs17291045-?	rs17291045	0	17291045	Intergenic	1	NR	5E-8	7.30102999566398	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	31834764	SNORD52	SNORD48;C6orf48			26801;50854			rs9368699-?	rs9368699	0	9368699	nearGene-5;nearGene-5	0	NR	5E-8	7.30102999566398	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6q24.3	6	148226666	Intergenic	SASH1			23328			rs9497975-?	rs9497975	0	9497975	intron	0	NR	7E-8	7.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	7p21.1	7	20007952	Intergenic	LOC101927668			101927668			rs38152-?	rs38152	0	38152	intron	0	NR	7E-8	7.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	14q23.1	14	57888330	Intergenic	SLC35F4 - C14orf37	341880	145407		       22.46	      115.76	rs8013190-?	rs8013190	0	8013190	Intergenic	1	NR	7E-8	7.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	31125810	CDSN	PSORS1C1			170679			rs3815087-?	rs3815087	0	3815087	UTR-5	0	NR	8E-8	7.096910013008055	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p12.1	6	55283305	HCRTR2	TRNAI25			100189401			rs9367630-?	rs9367630	0	9367630		0	NR	1E-7	7	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	Xq26.2	23	133003128	Intergenic	HS6ST2-AS1 - USP26	100874102	83844		      333.24	       22.35	rs17324272-?	rs17324272	0	17324272	Intergenic	1	NR	2E-7	6.698970004336019	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	11q14.3	11	88588556	Intergenic	GRM5			2915			rs16914280-?	rs16914280	0	16914280	intron	0	NR	3E-7	6.522878745280337	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	13q13.3	13	35603682	Intergenic	NBEA			26960			rs1777672-?	rs1777672	0	1777672	intron	0	NR	4E-7	6.397940008672037	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	11q14.3	11	90853732	Intergenic	DISC1FP1			101929222			rs12274302-?	rs12274302	0	12274302	intron	0	NR	4E-7	6.397940008672037	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2q37.1	2	233593475	Intergenic	UGT1A			7361			rs13394720-?	rs13394720	0	13394720		0	NR	5E-7	6.30102999566398	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	16q23.1	16	74847922	Intergenic	FA2H - WDR59	79152	79726		       73.09	       25.65	rs16948255-?	rs16948255	0	16948255	Intergenic	1	NR	1E-6	5.999999999999999	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2p16.1	2	56136242	Intergenic	MIR216B - CCDC85A	100126319	114800		      135.45	       47.88	rs6751715-?	rs6751715	0	6751715	Intergenic	1	NR	1E-6	5.999999999999999	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.32	6	32408694	BTNL2, NOTCH4	BTNL2			56244			rs3763313-?	rs3763313	0	3763313	nearGene-5	0	NR	2E-6	5.698970004336018	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	10q11.23	10	49353462	Intergenic	C10orf71 - DRGX	118461	644168		       25.97	       12.65	rs4838508-?	rs4838508	0	4838508	Intergenic	1	NR	2E-6	5.698970004336018	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6q27	6	169558886	NR	WDR27			253769			rs3734905-?	rs3734905	0	3734905	intron	0	NR	2E-6	5.698970004336018	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	10q26.2	10	128338841	Intergenic	LINC01163 - MGMT	101927381	4255		       21.12	     1128.35	rs11818629-?	rs11818629	0	11818629	Intergenic	1	NR	3E-6	5.522878745280337	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	3p23	3	31404088	Intergenic	CNN2P6 - THRAP3P1	339897	391524		      221.44	       48.75	rs17027625-?	rs17027625	0	17027625	Intergenic	1	NR	4E-6	5.397940008672037	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2q32.3	2	192469177	Intergenic	TMEFF2 - PCGEM1	23671	64002		      274.26	      280.67	rs1385351-?	rs1385351	0	1385351	Intergenic	1	NR	4E-6	5.397940008672037	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	1q42.3	1	234849241	Intergenic	RNY4P16 - TOMM20	100431173	9804		       11.17	      260.10	rs2069084-?	rs2069084	0	2069084	Intergenic	1	NR	6E-6	5.221848749616356	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2p25.2	2	5994808	NR	LINC01105 - LINC01247	150622	101929390		       14.59	      371.20	rs1405262-?	rs1405262	0	1405262	Intergenic	1	NR	6E-6	5.221848749616356	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	8q13.3	8	69812519	NR	SLCO5A1			81796			rs16936455-?	rs16936455	0	16936455	intron	0	NR	7E-6	5.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	Xq21.31	23	87935349	Intergenic	MRPS22P1 - CAPZA1P	359773	53338		      125.61	      159.57	rs12012519-?	rs12012519	0	12012519	Intergenic	1	NR	7E-6	5.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	9q21.13	9	73543766	Intergenic	ANXA1 - RORB	301	6096		      373.38	      953.57	rs11143609-?	rs11143609	0	11143609	Intergenic	1	NR	7E-6	5.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	18q21.31	18	57316323	Intergenic	BOD1L2 - ST8SIA3	284257	51046		      165.92	       36.17	rs1120787-?	rs1120787	0	1120787	Intergenic	1	NR	7E-6	5.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	5q32	5	150027170	NR	HMGXB3			22993			rs2304069-?	rs2304069	0	2304069	intron	0	NR	7E-6	5.154901959985742	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2q22.3	2	146614456	Intergenic	PABPC1P2 - RPL26P14	728773	100133235		       23.47	     1187.39	rs10928302-?	rs10928302	0	10928302	Intergenic	1	NR	8E-6	5.096910013008055	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	16p13.2	16	10089230	NR	GRIN2A			2903			rs1463132-?	rs1463132	0	1463132	intron	0	NR	8E-6	5.096910013008055	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	21q22.12	21	35161365	NR	RUNX1-IT1 - RPL34P3	80215	54026		      121.94	      310.71	rs2834812-?	rs2834812	0	2834812	Intergenic	1	NR	9E-6	5.045757490560675	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	1p32.2	1	57339878	NR	DAB1			1600			rs10159302-?	rs10159302	0	10159302	intron	0	NR	9E-6	5.045757490560675	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	5q23.2	5	125407574	Intergenic	HMGB1P22 - RPSAP37	644659	100270915		      141.77	      559.16	rs2637496-?	rs2637496	0	2637496	Intergenic	1	NR	9E-6	5.045757490560675	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	1q21.1	1	147037378	NR	LOC728989			728989			rs12122100-?	rs12122100	0	12122100	intron	0	NR	1E-6	5.999999999999999	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	32059031	TNXB	TNXB			7148			rs12198173-?	rs12198173	0	12198173	intron	0	NR	3E-6	5.522878745280337	(progression)	NR	NR	Illumina [NR]	N
01/19/2010	20041166	Fellay J	12/24/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20041166?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	6p21.33	6	30880476	DDR1, VARS2, DPCR1	DDR1			780			rs7756521-?	rs7756521	0	7756521	nearGene-5	0	NR	1E-6	5.999999999999999	(progression)	NR	NR	Illumina [NR]	N
01/13/2010	20032318	Sleiman PM	12/23/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20032318?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Variants of DENND1B associated with asthma in children.	Asthma	793 European ancestry cases, 1,988 European ancestry controls	917 European ancestry cases, 1,546 European ancestry controls, 1,667 African American cases, 2,045 African American controls	1q31.3	1	197356778	DENND1B, CRB1	CRB1			23418			rs2786098-?	rs2786098	0	2786098	intron	0	0.85	2E-13	12.69897000433602		   1.43	[NR] (European ancestry)	Illumina [~550,000]	N
12/28/2009	20023658	Mangold E	12/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20023658	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	17q22	17	56695877	NOG	NOG - C17orf67	9241	339210		      100.29	       96.04	rs227731-C	rs227731	0	227731	Intergenic	1	0.42	1E-8	8		   1.38	[1.21-1.56] 	Illumina [521,288]	N
12/28/2009	20023658	Mangold E	12/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20023658	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	10q25.3	10	117068049	KIAA1598, VAX1	KIAA1598			57698			rs7078160-A	rs7078160	0	7078160	intron	0	0.16	2E-8	7.698970004336018		   1.36	[1.21-1.53] 	Illumina [521,288]	N
12/28/2009	20023658	Mangold E	12/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20023658	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	2p21	2	43312986	THADA	THADA			63892			rs7590268-G	rs7590268	0	7590268	intron	0	0.22	9E-8	7.045757490560674		   1.42	[1.26-1.59] 	Illumina [521,288]	N
12/28/2009	20023658	Mangold E	12/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20023658	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	13q31.1	13	80094739	SPRY2	LINC01080 - SPRY2	101515984	10253		       68.08	      241.24	rs9574565-C	rs9574565	0	9574565	Intergenic	1	0.74	3E-7	6.522878745280337		   1.31	[1.01-1.70] 	Illumina [521,288]	N
12/28/2009	20023658	Mangold E	12/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20023658	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	15q13.3	15	32758222	FMN1, GREM1	GREM1 - FMN1	26585	342184		       23.55	        7.32	rs1258763-A	rs1258763	0	1258763	Intergenic	1	0.66	1E-6	5.999999999999999		   1.52	[1.23-1.86] 	Illumina [521,288]	N
12/28/2009	20023658	Mangold E	12/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20023658	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	17q22	17	56538256	NOG	ANKFN1 - RPL39P33	162282	100271521		       26.70	       34.79	rs17760296-G	rs17760296	0	17760296	Intergenic	1	0.16	7E-6	5.154901959985742		   1.50	[1.32-1.69] 	Illumina [521,288]	N
11/09/2013	20018918	Solovieff N	12/16/2009	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20018918	Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.	Fetal hemoglobin levels	848 Black cases	305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases	2p16.1	2	60492835	BCL11A	BCL11A			53335			rs766432-C	rs766432	0	766432	intron	0	0.33	1E-29	28.99999999999999	(African)	    .23	[NR] unit increase	Illumina [~600,000]	N
11/09/2013	20018918	Solovieff N	12/16/2009	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20018918	Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.	Fetal hemoglobin levels	848 Black cases	305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases	11p15.4	11	5352021	OR51B5,OR51B6	OR51B6			390058			rs5006884-A	rs5006884	0	5006884	missense	0	0.25	3E-8	7.522878745280337	(African)	    .16	[NR] unit increase	Illumina [~600,000]	N
11/09/2013	20018918	Solovieff N	12/16/2009	Blood	http://www.ncbi.nlm.nih.gov/pubmed/20018918	Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.	Fetal hemoglobin levels	848 Black cases	305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases	2p16.1	2	60492835	BCL11A	BCL11A			53335			rs766432-C	rs766432	0	766432	intron	0	0.25	1E-7	7	(East Asian)	    .32	[NR] unit increase	Illumina [~600,000]	N
12/28/2009	20018961	Zhang FR	12/16/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20018961?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	6p21.32			HLA-DR-DQ	 - 						rs602875-A	rs602875					0.68	5E-27			   1.61	[1.39-1.61] 	Illumina [491,883]	N
12/28/2009	20018961	Zhang FR	12/16/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20018961?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	8q21.3	8	89766285	RIPK2	RIPK2			8767			rs42490-G	rs42490	0	42490	intron	0	0.58	1E-16	16		   1.32	[1.23-1.41] 	Illumina [491,883]	N
12/28/2009	20018961	Zhang FR	12/16/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20018961?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	9q32	9	114796423	TNFSF15	TNFSF15			9966			rs6478108-A	rs6478108	0	6478108	intron	0	0.46	3E-21	20.52287874528034		   1.37	[1.28-1.46] 	Illumina [491,883]	N
12/28/2009	20018961	Zhang FR	12/16/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20018961?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	13q14.11	13	43883789	C13orf31	LACC1			144811			rs3764147-G	rs3764147	0	3764147	missense	0	0.31	4E-54	53.39794000867204		   1.68	[1.57-1.80] 	Illumina [491,883]	N
12/28/2009	20018961	Zhang FR	12/16/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20018961?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	16q12.1	16	50685192	NOD2	SNX20 - NOD2	124460	64127		        3.84	        8.40	rs9302752-G	rs9302752	0	9302752	Intergenic	1	0.29	4E-40	39.39794000867203		   1.59	[1.49-1.71] 	Illumina [491,883]	N
12/28/2009	20018961	Zhang FR	12/16/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/20018961?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	8q21.3	8	89811459	RIPK2	RIPK2 - COX6B1P6	8767	100462851		       20.40	       12.08	rs40457-A	rs40457	0	40457	Intergenic	1	0.28	1E-12	12		   1.30	[1.20-1.39] 	Illumina [491,883]	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	4q31.21	4	144564586	HHIP	GYPA - KRT18P51	2993	391703		      423.84	        7.65	rs1980057-T	rs1980057	0	1980057	Intergenic	1	0.40	3E-20	19.52287874528034	(FEV1/FVC)	    .52	[NR] % increase	Affymetrix & Illumina [2,534,500] (imputed)	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6q24.1	6	142429379	GPR126	GPR126			57211			rs3817928-A	rs3817928	0	3817928	intron	0	0.78	1E-9	8.999999999999998	(FEV1/FVC)	    .42	[NR] % decrease	Affymetrix & Illumina [2,534,500] (imputed)	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	5q33.3	5	157505368	ADAM19	ADAM19			8728			rs2277027-A	rs2277027	0	2277027	intron	0	0.71	1E-10	10	(FEV1/FVC)	    .38	[NR] % increase	Affymetrix & Illumina [2,534,500] (imputed)	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	6p21.32	6	32183666	AGER, PPT2	AGER			177			rs2070600-T	rs2070600	0	2070600	missense	0	0.04	3E-14	13.52287874528034	(FEV1/FVC)	   1.00	[NR] % increase	Affymetrix & Illumina [2,534,500] (imputed)	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	4q22.1	4	88948181	FAM13A	FAM13A			10144			rs2869967-T	rs2869967	0	2869967	intron	0	0.61	1E-7	7	(FEV1/FVC)	    .30	[NR] % increase	Affymetrix & Illumina [2,534,500] (imputed)	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	9q22.32	9	95468726	PTCH1	PTCH1;LOC100507346			5727;100507346			rs16909898-A	rs16909898	0	16909898	intron;ncRNA	0	0.90	5E-7	6.30102999566398	(FEV1/FVC)	    .50	[NR] % increase	Affymetrix & Illumina [2,534,500] (imputed)	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	5q32	5	148462790	HTR4	HTR4			3360			rs11168048-T	rs11168048	0	11168048	intron	0	0.58	1E-11	11	(FEV1/FVC)	    .40	[NR] % decrease	Affymetrix & Illumina [2,534,500] (imputed)	N
01/13/2010	20010835	Hancock DB	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010835?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function.	Pulmonary function	20,890 European ancestry individuals	16,178 European ancestry individuals	4q24	4	105697983	INTS12, NPNT, FLJ20184, GSTCD	INTS12			57117			rs11727189-T	rs11727189	0	11727189	intron	0	0.06	5E-17	16.30102999566398	(FEV1)	  64.70	[NR] ml increase	Affymetrix & Illumina [2,534,500] (imputed)	N
12/28/2009	20010834	Repapi E	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010834?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	2q35	2	217818431	TNS1	TNS1			7145			rs2571445-G	rs2571445	0	2571445	missense	0	0.60	1E-12	12	(FEV1)	    .07	[NR] % variance explained	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/28/2009	20010834	Repapi E	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010834?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	4q24	4	105767747	GSTCD	GSTCD;LOC101929558			79807;101929558			rs10516526-G	rs10516526	0	10516526	intron;intron	0	0.06	2E-23	22.69897000433602	(FEV1)	    .14	[NR] % variance explained	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/28/2009	20010834	Repapi E	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010834?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	4q31.21	4	144515172	HHIP	GYPA - KRT18P51	2993	391703		      374.42	       57.07	rs12504628-T	rs12504628	0	12504628	Intergenic	1	0.56	6E-13	12.22184874961636	(FEV1/FVC)	    .27	[NR] % variance explained	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/28/2009	20010834	Repapi E	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010834?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	5q32	5	148466252	HTR4	HTR4			3360			rs3995090-C	rs3995090	0	3995090	intron	0	0.41	4E-9	8.397940008672036	(FEV1)	    .07	[NR] % variance explained	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/28/2009	20010834	Repapi E	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010834?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.32	6	32183666	AGER	AGER			177			rs2070600-T	rs2070600	0	2070600	missense	0	0.06	3E-15	14.52287874528034	(FEV1/FVC)	    .09	[NR] % variance explained	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/28/2009	20010834	Repapi E	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010834?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	6p21.2	6	39816589	DAAM2	DAAM2			23500			rs2395730-C	rs2395730	0	2395730	intron	0	0.42	8E-8	7.096910013008055	(FEV1/FVC)	    .07	[NR] % variance explained	Affymetrix & Illumina [~2.5 million] (imputed)	N
12/28/2009	20010834	Repapi E	12/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/20010834?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	15q23	15	71352781	THSD4	THSD4			79875			rs12899618-G	rs12899618	0	12899618	intron	0	0.85	7E-15	14.15490195998574	(FEV1/FVC)	    .09	[NR] % variance explained	Affymetrix & Illumina [~2.5 million] (imputed)	N
01/08/2010	20012890	Ronald A	12/13/2009	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/20012890?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association study of social and non-social autistic-like traits in the general population using pooled DNA, 500 K SNP microarrays and both community and diagnosed autism replication samples.	Social and non-social autistic-like traits	1,462 European ancestry individuals	3,494 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [up to 435,457] (pooled)	N
03/22/2010	20175129	Zhao LJ	12/11/2009	J Bone Miner Res	http://www.ncbi.nlm.nih.gov/pubmed/20175129?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	Genome-wide association study for femoral neck bone geometry.	Femoral neck bone geometry	987 European ancestry individuals	1,488 European ancestry individuals, 2,118 Chinese ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [379,319]	N
12/28/2009	19961619	Castro-Giner F	12/06/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19961619?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	A pooling-based genome-wide analysis identifies new potential candidate genes for atopy in the European Community Respiratory Health Survey (ECRHS).	Atopy	75 European ancestry atopy and asthma cases, 75 European ancestry atopy only cases, 75 European ancestry controls	429 European ancestry atopy cases, 222 European ancestry controls	2p21	2	42049781	SGK493	PKDCC			91461			rs4952590-?	rs4952590	0	4952590	intron	0	0.86	2E-6	5.698970004336018		   1.92	[1.27-2.86] 	Illumina [NR] (pooled)	N
12/28/2009	19966805	Wallace C	12/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19966805?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=7	The imprinted DLK1-MEG3 gene region on chromosome 14q32.2 alters susceptibility to type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,840 European ancestry cases, 2,670 European ancestry controls, 5,766 European ancestry familial triads	19p13.2	19	10364976	TYK2	TYK2			7297			rs2304256-C	rs2304256	0	2304256	missense	0	0.71	4E-9	8.397940008672036		   1.16	[1.11-1.22] 	Affymetrix & Illumina [~2.6 million](imputed)	N
12/28/2009	19966805	Wallace C	12/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19966805?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=7	The imprinted DLK1-MEG3 gene region on chromosome 14q32.2 alters susceptibility to type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,840 European ancestry cases, 2,670 European ancestry controls, 5,766 European ancestry familial triads	14q32.2	14	100839708	DLK1, MEG3, RTL1, DIO3	MEG3			55384			rs941576-A	rs941576	0	941576	intron	0	0.57	1E-10	10		   1.11	[1.06-1.16] 	Affymetrix & Illumina [~2.6 million](imputed)	N
01/07/2010	20011104	Richards JB	12/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20011104?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	A genome-wide association study reveals variants in ARL15 that influence adiponectin levels.	Adiponectin levels	8,531 European ancestry individuals	6,202 European ancestry individuals	5q11.2	5	54004832	ARL15	ARL15			54622			rs4311394-G	rs4311394	0	4311394	intron	0	0.41	3E-8	7.522878745280337		    .96	[NR] ug/ml increase	Affymetrix & Illumina [~2.2 million] (imputed)	N
01/07/2010	20011104	Richards JB	12/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20011104?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	A genome-wide association study reveals variants in ARL15 that influence adiponectin levels.	Adiponectin levels	8,531 European ancestry individuals	6,202 European ancestry individuals	3q27.3	3	186812695	ADIPOQ	LOC102724699			102724699			rs266717-C	rs266717	0	266717	intron	0	0.48	9E-19	18.04575749056067		   1.07	[NR] ug/ml increase	Affymetrix & Illumina [~2.2 million] (imputed)	N
01/07/2010	20011104	Richards JB	12/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/20011104?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	A genome-wide association study reveals variants in ARL15 that influence adiponectin levels.	Adiponectin levels	8,531 European ancestry individuals	6,202 European ancestry individuals	3q27.3	3	186833922	ADIPOQ	RFC4 - ADIPOQ	5984	9370		       27.23	        8.75	rs1648707-C	rs1648707	0	1648707	Intergenic	1	0.07	3E-12	11.52287874528034		    .94	[NR] ug/ml increase	Affymetrix & Illumina [~2.2 million] (imputed)	N
01/13/2010	20018283	Heid IM	12/02/2009	Atherosclerosis	http://www.ncbi.nlm.nih.gov/pubmed/20018283?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Clear detection of ADIPOQ locus as the major gene for plasma adiponectin: results of genome-wide association analyses including 4659 European individuals.	Adiponectin levels	4,659 European ancestry individuals	13,795 European ancestry individuals	3q27.3	3	186852664	ADIPOQ	ADIPOQ;ADIPOQ-AS1			9370;100874095			rs17366568-G	rs17366568	0	17366568	intron;ncRNA	0	0.89	1E-41	41		    .13	[NR] log(ug/ml) increase	Affymetrix and Illumina [2,585,854] (imputed)	N
09/06/2013	19954339	Yin CS	12/01/2009	J Altern Complement Med	http://www.ncbi.nlm.nih.gov/pubmed/19954339	Genome-wide association study of the four-constitution medicine.	Sasang constitutional medicine type	60 Korean ancestry individuals	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [353,202]	N
12/28/2009	19950302	Zhou X	11/30/2009	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/19950302?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	HLA-DPB1 and DPB2 are genetic loci for systemic sclerosis: a genome-wide association study in Koreans with replication in North Americans.	Systemic sclerosis	133 Korean ancestry cases, 557 Korean ancestry controls	1,107 European ancestry cases, 2,747 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [440,734]	N
12/18/2009	19944697	Karlsen TH	11/25/2009	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/19944697?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association analysis in primary sclerosing cholangitis.	Primary sclerosing cholangitis	285 European ancestry cases, 298 European ancestry controls	766 European ancestry cases, 2,935 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [375,487]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p21	2	43845437	ABCG5,ABCG8	ABCG8			64241			rs4299376-?	rs4299376	0	4299376	intron	0	NR	2E-8	7.698970004336018	(LDL-C.assay, fasting)	   2.60	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-?	rs10889353	0	10889353	intron	0	NR	1E-13	13	(TG.by.NMR, whole)	    .03	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-?	rs10889353	0	10889353	intron	0	NR	2E-11	10.69897000433602	(TG.by.NMR, fasting)	    .04	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-?	rs10889353	0	10889353	intron	0	NR	3E-10	9.522878745280336	(VLDL.medium, fasting)	   1.32	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	1	62465961	ANGPTL3	DOCK7			85440			rs1167998-?	rs1167998	0	1167998	intron	0	NR	4E-9	8.397940008672036	(VLDL.small, fasting)	   1.51	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-?	rs10889353	0	10889353	intron	0	NR	7E-10	9.154901959985741	(VLDL.small, whole)	   1.32	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-?	rs10889353	0	10889353	intron	0	NR	1E-12	12	(VLDL.total, fasting)	   2.69	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-?	rs10889353	0	10889353	intron	0	NR	1E-14	14	(VLDL.total, whole)	   2.97	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21174310	APOB	TDRD15 - RNA5SP87	100129278	100873320		       36.33	     1164.58	rs506585-?	rs506585	0	506585	Intergenic	1	NR	3E-31	30.52287874528034	(APOB.assay, whole)	   4.09	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21174310	APOB	TDRD15 - RNA5SP87	100129278	100873320		       36.33	     1164.58	rs506585-?	rs506585	0	506585	Intergenic	1	NR	1E-25	25	(APOB.assay, fasting)	   4.36	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21041028	APOB	APOB			338			rs1367117-?	rs1367117	0	1367117	missense	0	NR	2E-17	16.69897000433602	(LDL-C.assay, fasting)	   3.92	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21041028	APOB	APOB			338			rs1367117-?	rs1367117	0	1367117	missense	0	NR	6E-25	24.22184874961636	(LDL-C.assay, whole)	   4.03	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21155933	APOB	TDRD15 - RNA5SP87	100129278	100873320		       17.95	     1182.95	rs312985-?	rs312985	0	312985	Intergenic	1	NR	1E-17	17	(LDL.total, fasting)	    .04	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21174310	APOB	TDRD15 - RNA5SP87	100129278	100873320		       36.33	     1164.58	rs506585-?	rs506585	0	506585	Intergenic	1	NR	2E-22	21.69897000433602	(LDL.total, whole)	    .04	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21008652	APOB	APOB			338			rs676210-?	rs676210	0	676210	missense	0	NR	2E-9	8.698970004336019	(TG.assay, fasting)	    .05	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21014672	APOB	APOB			338			rs673548-?	rs673548	0	673548	intron	0	NR	4E-10	9.397940008672037	(TG.assay, whole)	    .04	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	20983311	APOB	C2orf43 - APOB	60526	338		      160.18	       18.12	rs6754295-?	rs6754295	0	6754295	Intergenic	1	NR	4E-47	46.39794000867204	(VLDL.small, fasting)	   4.13	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21008652	APOB	APOB			338			rs676210-?	rs676210	0	676210	missense	0	NR	4E-64	63.39794000867204	(VLDL.small, whole)	   4.22	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21014672	APOB	APOB			338			rs673548-?	rs673548	0	673548	intron	0	NR	5E-42	41.30102999566397	(VLDL.total, fasting)	   6.62	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	2	21008652	APOB	APOB			338			rs676210-?	rs676210	0	676210	missense	0	NR	9E-56	55.04575749056067	(VLDL.total, whole)	   6.38	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19q13.32	19	44744370	APOC1,2-APOE	BCL3			602			rs4803750-?	rs4803750	0	4803750	intron	0	NR	3E-51	50.52287874528033	(APOB.assay, whole)	   8.50	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19q13.32	19	44744370	APOC1,2-APOE	BCL3			602			rs4803750-?	rs4803750	0	4803750	intron	0	NR	1E-27	27	(LDL-C.assay, fasting)	   9.28	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19q13.32	19	44744370	APOC1,2-APOE	BCL3			602			rs4803750-?	rs4803750	0	4803750	intron	0	NR	1E-37	37	(LDL-C.assay, whole)	   9.28	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	1	109275908	CELSR2,PSRC1,SPRT1	CELSR2			1952			rs646776-?	rs646776	0	646776	nearGene-3	0	NR	2E-53	52.69897000433602	(APOB.assay, whole)	   5.21	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	1	109275908	CELSR2,PSRC1,SPRT1	CELSR2			1952			rs646776-?	rs646776	0	646776	nearGene-3	0	NR	4E-39	38.39794000867203	(APOB.assay, fasting)	   5.25	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	1	109275908	CELSR2,PSRC1,SPRT1	CELSR2			1952			rs646776-?	rs646776	0	646776	nearGene-3	0	NR	2E-20	19.69897000433602	(LDL.total, fasting)	    .04	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	1	109275908	CELSR2,PSRC1,SPRT1	CELSR2			1952			rs646776-?	rs646776	0	646776	nearGene-3	0	NR	2E-27	26.69897000433602	(LDL.total, whole)	    .04	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56971567	CETP	CETP			1071			rs1532624-?	rs1532624	0	1532624	intron	0	NR	1E-39	38.99999999999999	(APOA1.assay, fasting)	   3.92	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56961324	CETP	CETP			1071			rs1800775-?	rs1800775	0	1800775	nearGene-5	0	NR	3E-93	92.52287874528032	(HDL-C.assay, whole)	   3.10	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56961324	CETP	CETP			1071			rs1800775-?	rs1800775	0	1800775	nearGene-5	0	NR	1E-81	80.99999999999999	(HDL-C.by.NMR, whole)	   2.66	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56961324	CETP	CETP			1071			rs1800775-?	rs1800775	0	1800775	nearGene-5	0	NR	2E-59	58.69897000433601	(HDL.large, fasting)	    .70	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56961324	CETP	CETP			1071			rs1800775-?	rs1800775	0	1800775	nearGene-5	0	NR	5E-87	86.30102999566398	(HDL.large, whole)	    .73	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56961324	CETP	CETP			1071			rs1800775-?	rs1800775	0	1800775	nearGene-5	0	NR	1E-53	53	(HDL.mean.size, fasting)	    .08	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56961324	CETP	CETP			1071			rs1800775-?	rs1800775	0	1800775	nearGene-5	0	NR	8E-78	77.09691001300804	(HDL.mean.size, whole)	    .09	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56972678	CETP	CETP			1071			rs7499892-?	rs7499892	0	7499892	intron	0	NR	2E-14	13.69897000433602	(HDL.total, fasting)	    .74	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56972678	CETP	CETP			1071			rs7499892-?	rs7499892	0	7499892	intron	0	NR	1E-20	20	(HDL.total, whole)	    .76	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56963321	CETP	CETP			1071			rs1864163-?	rs1864163	0	1864163	intron	0	NR	7E-22	21.15490195998574	(LDL.large, fasting)	  30.38	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56963321	CETP	CETP			1071			rs1864163-?	rs1864163	0	1864163	intron	0	NR	3E-25	24.52287874528033	(LDL.large, whole)	  27.87	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	4E-32	31.39794000867204	(TG.assay, fasting)	    .08	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	1E-37	37	(TG.assay, whole)	    .07	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	3E-29	28.52287874528033	(TG.by.NMR, fasting)	    .06	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	3E-35	34.52287874528033	(TG.by.NMR, whole)	    .05	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	4E-24	23.39794000867204	(VLDL.large, fasting)	    .36	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	3E-28	27.52287874528033	(VLDL.large, whole)	    .34	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-?	rs6511720	0	6511720	intron	0	NR	5E-25	24.30102999566398	(APOB.assay, whole)	   4.52	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-?	rs6511720	0	6511720	intron	0	NR	3E-18	17.52287874528034	(APOB.assay, fasting)	   4.49	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-?	rs6511720	0	6511720	intron	0	NR	1E-25	25	(LDL-C.assay, fasting)	   6.89	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-?	rs6511720	0	6511720	intron	0	NR	2E-31	30.69897000433602	(LDL-C.assay, whole)	   6.53	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-?	rs1532085	0	1532085	intron	0	NR	1E-19	19	(IDL.total, whole)	    .11	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-?	rs1532085	0	1532085	intron	0	NR	9E-15	14.04575749056067	(HDL-C.assay, fasting)	   1.42	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-?	rs1532085	0	1532085	intron	0	NR	4E-16	15.39794000867204	(IDL.total, fasting)	    .11	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	6E-14	13.22184874961636	(APOA1.assay, whole)	   2.53	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	2E-11	10.69897000433602	(APOA1.assay, fasting)	   2.62	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	2E-8	7.698970004336018	(HDL-C.assay, fasting)	   1.33	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	1E-9	8.999999999999998	(HDL-C.assay, whole)	   1.24	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	5E-13	12.30102999566398	(HDL-C.by.NMR, fasting)	   1.59	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	7E-16	15.15490195998574	(HDL-C.by.NMR, whole)	   1.51	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	1E-9	8.999999999999998	(HDL.large, fasting)	    .35	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-?	rs4939883	0	4939883	Intergenic	1	NR	4E-10	9.397940008672037	(HDL.large, whole)	    .31	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	8	19962894	LPL	LPL			4023			rs331-?	rs331	0	331	intron	0	NR	1E-17	17	(HDL-C.assay, whole)	   1.46	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	8	19962894	LPL	LPL			4023			rs331-?	rs331	0	331	intron	0	NR	3E-14	13.52287874528034	(HDL-C.assay, fasting)	   1.51	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	8	19962894	LPL	LPL			4023			rs331-?	rs331	0	331	intron	0	NR	1E-11	11	(HDL-C.by.NMR, fasting)	   1.26	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	8	19962894	LPL	LPL			4023			rs331-?	rs331	0	331	intron	0	NR	1E-14	14	(HDL-C.by.NMR, whole)	   1.21	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	8	19967052	LPL	LPL			4023			rs1059611-?	rs1059611	0	1059611	UTR-3	0	NR	2E-17	16.69897000433602	(TG.by.NMR, fasting)	    .07	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8p21.3	8	19967052	LPL	LPL			4023			rs1059611-?	rs1059611	0	1059611	UTR-3	0	NR	1E-20	20	(VLDL.medium, fasting)	   2.88	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	20	45925376	PLTP	PLTP - PCIF1	5360	63935		       13.01	        9.30	rs6065906-?	rs6065906	0	6065906	Intergenic	1	NR	3E-49	48.52287874528034	(HDL.large, whole)	    .69	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	20	45906012	PLTP	PLTP			5360			rs6065904-?	rs6065904	0	6065904	intron	0	NR	4E-40	39.39794000867203	(HDL.large, fasting)	    .69	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	20	45925376	PLTP	PLTP - PCIF1	5360	63935		       13.01	        9.30	rs6065906-?	rs6065906	0	6065906	Intergenic	1	NR	8E-37	36.09691001300805	(HDL.mean.size, fasting)	    .09	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	20	45925376	PLTP	PLTP - PCIF1	5360	63935		       13.01	        9.30	rs6065906-?	rs6065906	0	6065906	Intergenic	1	NR	1E-45	44.99999999999999	(HDL.mean.size, whole)	    .08	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8q24.13	8	125467073	TRIB1	TRIB1 - LINC00861	10221	100130231		       28.67	      455.45	rs6982636-?	rs6982636	0	6982636	Intergenic	1	NR	7E-12	11.15490195998574	(APOB.assay, whole)	   1.95	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	8q24.13	8	125467073	TRIB1	TRIB1 - LINC00861	10221	100130231		       28.67	      455.45	rs6982636-?	rs6982636	0	6982636	Intergenic	1	NR	1E-9	8.999999999999998	(TG.assay, whole)	    .03	[NR] unit decrease	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56971567	CETP	CETP			1071			rs1532624-?	rs1532624	0	1532624	intron	0	NR	1E-66	65.99999999999999	(HDL-C.assay, fasting)	   3.09	[NR] unit increase	Illumina [335,603]	N
09/24/2013	19936222	Chasman DI	11/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19936222	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry women	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	16	56971567	CETP	CETP			1071			rs1532624-?	rs1532624	0	1532624	intron	0	NR	3E-55	54.52287874528033	(HDL-C.by.NMR, fasting)	   2.61	[NR] unit increase	Illumina [335,603]	N
12/28/2009	20183929	Nuinoon M	11/19/2009	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20183929	A genome-wide association identified the common genetic variants influence disease severity in beta0-thalassemia/hemoglobin E.	Beta thalassemia/hemoglobin E disease	235 mild Thai-Chinese ancesry cases, 383 severe Thai-Chinese ancestry cases	52 mild Indonesian ancestry cases, 122 severe Indonesian ancestry cases	2p16.1	2	60492835	BCL11A	BCL11A			53335			rs766432-?	rs766432	0	766432	intron	0	0.24	1E-10	10		   2.80	[2.04-3.84] 	Illumina [548,094]	N
12/28/2009	20183929	Nuinoon M	11/19/2009	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20183929	A genome-wide association identified the common genetic variants influence disease severity in beta0-thalassemia/hemoglobin E.	Beta thalassemia/hemoglobin E disease	235 mild Thai-Chinese ancesry cases, 383 severe Thai-Chinese ancestry cases	52 mild Indonesian ancestry cases, 122 severe Indonesian ancestry cases	6q23.3	6	135106006	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      126.57	       75.31	rs9376092-?	rs9376092	0	9376092	Intergenic	1	0.23	2E-11	10.69897000433602		   2.91	[2.12-3.99] 	Illumina [548,094]	N
12/28/2009	20183929	Nuinoon M	11/19/2009	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/20183929	A genome-wide association identified the common genetic variants influence disease severity in beta0-thalassemia/hemoglobin E.	Beta thalassemia/hemoglobin E disease	235 mild Thai-Chinese ancesry cases, 383 severe Thai-Chinese ancestry cases	52 mild Indonesian ancestry cases, 122 severe Indonesian ancestry cases	11p15.4	11	5242916	HBE1, HBG2, HBG1, HBD, HBBP1	HBBP1			3044			rs2071348-?	rs2071348	0	2071348	intron	0	0.50	3E-15	14.52287874528034		   4.05	[2.64-6.21] 	Illumina [548,094]	N
12/14/2009	19915573	Asano K	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915573?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.33	6	31143579	HLA	CCHCR1			54535			rs9263739-T	rs9263739	0	9263739	intron	0	0.15	4E-67	66.39794000867204		   2.73	[2.43-3.07] 	Illumina [513,923]	N
12/14/2009	19915573	Asano K	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915573?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	1q23.3	1	161509955	FCGR2A	FCGR2A			2212			rs1801274-?	rs1801274	0	1801274	missense	0	0.78	2E-12	11.69897000433602		   1.59	[1.39-1.82] 	Illumina [513,923]	N
12/14/2009	19915573	Asano K	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915573?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	13q12.13	13	26957130	USP12	FGFR1OP2P1 - RPS21P8	100873883	100873798		       51.35	       20.42	rs17085007-C	rs17085007	0	17085007	Intergenic	1	0.23	7E-8	7.154901959985742		   1.35	[1.21-1.51] 	Illumina [513,923]	N
12/14/2009	19915573	Asano K	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915573?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	9p24.1	9	5213687	JAK2, INSL6, INSL4	INSL6 - INSL4	11172	3641		       28.07	       17.73	rs10975003-C	rs10975003	0	10975003	Intergenic	1	0.19	1E-6	5.999999999999999		   1.34	[1.18-1.51] 	Illumina [513,923]	N
12/14/2009	19915573	Asano K	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915573?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	7q31.1	7	107812658	SLC26A3	PIGCP2 - DLD	100128307	1738		        3.07	       78.48	rs2108225-A	rs2108225	0	2108225	Intergenic	1	0.65	1E-7	7		   1.32	[1.19-1.47] 	Illumina [513,923]	N
12/14/2009	19915573	Asano K	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915573?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	6	32396067	BTNL2	BTNL2			56244			rs9268480-G	rs9268480	0	9268480	cds-synon	0	0.91	3E-6	5.522878745280337		   1.82	[1.43-2.33] 	Illumina [513,923]	N
12/14/2009	19915573	Asano K	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915573?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	6p21.32	6	32465390	Intergenic	TRNAI25			100189401			rs2395185-G	rs2395185	0	2395185		0	0.61	5E-22	21.30102999566398		   1.92	[1.68-2.19] 	Illumina [513,923]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	7q31.1	7	107854989	LAMB1	PIGCP2 - DLD	100128307	1738		       45.40	       36.15	rs886774-G	rs886774	0	886774	Intergenic	1	0.41	3E-8	7.522878745280337		   1.11	[1.03-1.19] 	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	16q22.1	16	68557327	CDH1	ZFP90			146198			rs1728785-G	rs1728785	0	1728785	intron	0	0.76	3E-8	7.522878745280337		   1.17	[1.07-1.27] 	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	20q13.12	20	44436388	HNF4A	MIR3646 - C20orf62	100500813	140834		       28.19	       25.38	rs6017342-C	rs6017342	0	6017342	Intergenic	1	0.52	9E-17	16.04575749056067		   1.17	[1.09-1.26] 	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1p36.12	1	22371954	Intergenic	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-A	rs7524102	0	7524102	Intergenic	1	0.83	3E-7	6.522878745280337		   1.10	[1.00-1.21] 	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	13q14.11	13	39931373	Intergenic	CDKN2AIPNLP3 - LINC00332	100874397	100874127		      113.32	      250.44	rs9548988-T	rs9548988	0	9548988	Intergenic	1	0.46	3E-7	6.522878745280337		   1.10	[1.03-1.19] 	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1p36.13	1	19845367	OTUD3, PLA2G2E	RNF186 - OTUD3	54546	23252		       30.09	       36.50	rs6426833-?	rs6426833	0	6426833	Intergenic	1	NR	2E-11	10.69897000433602		NR	NR	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-?	rs11209026	0	11209026	missense	0	NR	3E-10	9.522878745280336		NR	NR	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1q32.1	1	206770623	IL10	IL10			3586			rs3024493-?	rs3024493	0	3024493	intron	0	NR	8E-8	7.096910013008055		NR	NR	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	6p21.32	6	32463370	MHC	TRNAI25			100189401			rs9268877-?	rs9268877	0	9268877		0	NR	4E-23	22.39794000867203		NR	NR	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1q32.1	1	200908434	KIF21B	C1orf106			55765			rs7554511-?	rs7554511	0	7554511	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	3p21.31	3	49664550	MST1	BSN			8927			rs9858542-?	rs9858542	0	9858542	cds-synon	0	NR	7E-9	8.154901959985743		NR	NR	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	9q34.3	9	136374886	CARD9	CARD9			64170			rs10781500-?	rs10781500	0	10781500	nearGene-5	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [NR]	N
12/11/2009	19915572	Barrett JC	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915572?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	10q24.2	10	99530544	NKX2, NKX3	LOC101927324			101927324			rs6584283-?	rs6584283	0	6584283	intron	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [NR]	N
12/10/2009	19915574	Imielinski M	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915574?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	19q13.11	19	33259408	Intergenic	SLC7A10 - CEBPA	56301	1050		       33.56	       40.53	rs10500264-?	rs10500264	0	10500264	Intergenic	1	0.18	4E-10	9.397940008672037		   1.21	[1.11-1.31] 	Illumina [~500,000]	N
12/10/2009	19915574	Imielinski M	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915574?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	22q12.2	22	30133642	HORMAD2, MTMR3, LIF	HORMAD2			150280			rs2412973-?	rs2412973	0	2412973	intron	0	0.46	2E-9	8.698970004336019		   1.15	[1.01-1.31] 	Illumina [~500,000]	N
12/10/2009	19915574	Imielinski M	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915574?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	16p11.2	16	28826194	IL27, CCDC101, CLN3, EIF3C, NUPR1, SULT1A1, SULT1A2	ATXN2L			11273			rs8049439-G	rs8049439	0	8049439	intron	0	0.37	2E-9	8.698970004336019		   1.14	[1.00-1.30] 	Illumina [~500,000]	N
12/10/2009	19915574	Imielinski M	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915574?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	10q22.3	10	79300560	ZMIZ1	ZMIZ1			57178			rs1250550-?	rs1250550	0	1250550	intron	0	0.68	6E-9	8.221848749616356		   1.16	[1.09-1.25] 	Illumina [~500,000]	N
12/10/2009	19915576	Satake W	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915576?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	1q32.1	1	205783537	PARK16, SLC45A3, NUCKS1, RAB7L1, SLC41A1, PM20D1	RAB7L1 - SLC41A1	8934	254428		        8.05	        5.56	rs947211-?	rs947211	0	947211	Intergenic	1	NR	2E-12	11.69897000433602		   1.30	[1.21-1.39] 	Illumina [435,470]	N
12/10/2009	19915576	Satake W	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915576?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	4p15.32	4	15736314	BST1	BST1			683			rs4538475-?	rs4538475	0	4538475	intron	0	NR	3E-9	8.522878745280337		   1.24	[1.16-1.34] 	Illumina [435,470]	N
12/10/2009	19915576	Satake W	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915576?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	4q22.1	4	89718364	SNCA	GPRIN3 - SNCA	285513	6622		      410.35	        5.74	rs11931074-?	rs11931074	0	11931074	Intergenic	1	NR	7E-17	16.15490195998574		   1.37	[1.27-1.48] 	Illumina [435,470]	N
12/10/2009	19915576	Satake W	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915576?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	12q12	12	40034759	LRRK2	SLC2A13			114134			rs1994090-?	rs1994090	0	1994090	intron	0	NR	3E-8	7.522878745280337		   1.39	[1.24-1.56] 	Illumina [435,470]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	17q21.31	17	45641777	MAPT,  C17orf69, KIAA1267, LOC644246	CRHR1;CRHR1-IT1			1394;147081			rs393152-A	rs393152	0	393152	intron;intron	0	0.82	2E-16	15.69897000433602		   1.30	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	4q22.1	4	89757390	SNCA	SNCA			6622			rs2736990-C	rs2736990	0	2736990	intron	0	0.51	2E-16	15.69897000433602		   1.23	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	1q32.1	1	205744250	PARK16, NUCKS1	NUCKS1			64710			rs823128-A	rs823128	0	823128	intron	0	0.97	7E-8	7.154901959985742		   1.52	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	17q21.31	17	46751565	NSF	NSF			4905			rs199533-C	rs199533	0	199533	cds-synon	0	0.83	1E-14	14		   1.28	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	14q22.2	14	53824112	BMP4	RPS3AP46 - MIR5580	100271596	100847076		      210.73	      124.32	rs12431733-T	rs12431733	0	12431733	Intergenic	1	0.48	3E-6	5.522878745280337		   1.13	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	10q24.32	10	102831636	CYP17A1, C10orf32, CNNM2, SFXN2	CYP17A1;LOC102724307			1586;102724307			rs17115100-G	rs17115100	0	17115100	intron;nearGene-5	0	0.91	7E-8	7.154901959985742		   1.25	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	10p13	10	15519544	ITGA8	ITGA8			8516			rs7077361-T	rs7077361	0	7077361	intron	0	0.89	5E-6	5.301029995663981		   1.19	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	4q22.1	4	89876150	MMRN1	SNCA - MMRN1	6622	22915		       37.85	       18.71	rs6532197-G	rs6532197	0	6532197	Intergenic	1	0.09	1E-7	7		   1.32	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	20p12.1	20	13316265	C20orf82	ISM1-AS1 - TASP1	100505536	55617		       76.58	       73.12	rs1223271-G	rs1223271	0	1223271	Intergenic	1	0.87	5E-6	5.301029995663981		   1.18	[NR] 	Illumina [463,185]	N
12/10/2009	19915575	Simon-Sanchez J	11/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19915575?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	4q21.1	4	76277833	STBD1	FAM47E;FAM47E-STBD1			100129583;100631383			rs6812193-C	rs6812193	0	6812193	intron;intron	0	0.66	4E-7	6.397940008672037		   1.12	[NR] 	Illumina [463,185]	N
01/07/2010	20039944	Docherty SJ	11/10/2009	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/20039944?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association study identifies multiple loci associated with mathematics ability and disability.	Mathematical ability	600 European ancestry high-performing children, 600 European ancestry low-performing children	1,954 European ancestry children	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [358,948] (pooled)	N
12/04/2009	19910028	Mathias RA	11/10/2009	J Allergy Clin Immunol	http://www.ncbi.nlm.nih.gov/pubmed/19910028?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study on African-ancestry populations for asthma.	Asthma	464 African American cases, 471 African American controls, 355 African Caribbean ancestry cases and 574 African Caribbean ancestry controls from 163 families	994 European ancestry cases, 1,243 European ancestry controls, 2,331 African American cases, 2,874 African American controls 	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~644,503]	N
12/03/2009	19902172	Palmer ND	11/10/2009	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/19902172?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Candidate loci for insulin sensitivity and disposition index from a genome-wide association analysis of Hispanic participants in the Insulin Resistance Atherosclerosis (IRAS) Family Study.	Insulin-related traits	229 Hispanic individuals from 34 families	814 Hispanic family members	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [309,200]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	10q22.3	10	76151274	C10orf11	C10orf11			83938			rs10740455-A	rs10740455	0	10740455	intron	0	0.08	7E-6	5.154901959985742		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	9p24.2	9	4015370	GLIS3	GLIS3			169792			rs564816-C	rs564816	0	564816	intron	0	0.04	3E-7	6.522878745280337		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	13q12.3	13	29046517	KIAA0774 	MTUS2			23281			rs2479768-G	rs2479768	0	2479768	intron	0	0.03	6E-6	5.221848749616356		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	12p12.1	12	21298461	SLCO1A2	SLCO1A2			6579			rs16923647-T	rs16923647	0	16923647	intron	0	0.1	2E-6	5.698970004336018		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	12p12.1	12	21176827	SLCO1B1	SLCO1B1			10599			rs11045818-G	rs11045818	0	11045818	cds-synon	0	0.14	7E-7	6.154901959985743		   9.30	[5.7-12.9] mL/min/m2 decrease	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	12p12.1	12	21168436	SLCO1B1	SLCO1B1			10599			rs10841753-T	rs10841753	0	10841753	intron	0	0.19	7E-6	5.154901959985742		   7.10	[4.0-10.2] mL/min/m2 decrease	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	12p12.1	12	21229685	SLCO1B1	SLCO1B1			10599			rs11045879-T	rs11045879	0	11045879	intron	0	0.16	8E-11	10.09691001300805		   1.80	[7.6-14.0] mL/min/m2 increase	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	1q24.2	1	170159467	Intergenic	METTL11B			149281			rs495524-T	rs495524	0	495524	intron	0	0.42	2E-6	5.698970004336018		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	1p36.13	1	19005582	Intergenic	IFFO2 - UBR4	126917	23352		       49.25	       68.92	rs7523455-A	rs7523455	0	7523455	Intergenic	1	0.19	2E-7	6.698970004336019		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	1p36.13	1	18995001	Intergenic	IFFO2 - UBR4	126917	23352		       38.67	       79.51	rs16862426-C	rs16862426	0	16862426	Intergenic	1	0.03	9E-8	7.045757490560674		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	10p12.1	10	29198436	Intergenic	RPL21P93 - LYZL1	653665	84569		      298.91	       90.62	rs4387258-G	rs4387258	0	4387258	Intergenic	1	0.14	4E-6	5.397940008672037		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	11p12	11	42852452	Intergenic	RPL9P23 - HNRNPKP3	100131020	399881		     1313.47	      409.05	rs4129601-G	rs4129601	0	4129601	Intergenic	1	0.03	2E-6	5.698970004336018		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	12q24.13	12	112721033	Intergenic	MIR1302-1 - RPH3A	100302227	22895		       25.86	       70.71	rs7312122-G	rs7312122	0	7312122	Intergenic	1	0.16	9E-6	5.045757490560675		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	12q14.1	12	59455896	Intergenic	METTL15P2 - SLC16A7	644915	9194		      401.71	      140.14	rs276000-C	rs276000	0	276000	Intergenic	1	0.02	7E-7	6.154901959985743		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	16q12.1	16	52288064	Intergenic	LINC00919 - TOX3	100505619	27324		      202.96	      149.71	rs16951021-T	rs16951021	0	16951021	Intergenic	1	0.01	3E-7	6.522878745280337		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	2q22.1	2	139869162	Intergenic	RPL9P13 - MTND2P19	100270856	100873225		      135.87	      350.48	rs16842994-C	rs16842994	0	16842994	Intergenic	1	0.02	2E-6	5.698970004336018		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	2p23.1	2	31153788	Intergenic	GALNT14 - CAPN14	79623	440854		       15.06	       19.27	rs6543610-C	rs6543610	0	6543610	Intergenic	1	0.02	1E-7	7		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	6q24.1	6	141535997	Intergenic	RPS18P10 - RPS3AP23	729293	100271131		      613.04	       99.72	rs7742587-C	rs7742587	0	7742587	Intergenic	1	0.02	3E-7	6.522878745280337		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	6q24.1	6	141535457	Intergenic	RPS18P10 - RPS3AP23	729293	100271131		      612.50	      100.26	rs6570465-C	rs6570465	0	6570465	Intergenic	1	0.02	4E-7	6.397940008672037		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	6q16.1	6	94712900	Intergenic	TSG1 - CYCSP17	643432	360172		      936.42	      791.28	rs4145130-A	rs4145130	0	4145130	Intergenic	1	0.06	1E-7	7		NR	NR	Affymetrix [398,699]	N
09/24/2013	19901119	Trevino LR	11/09/2009	J Clin Oncol	http://www.ncbi.nlm.nih.gov/pubmed/19901119	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate phramacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases; 73 African American cases; 41 Other ancestry cases, 5 Asian unspecified cases; 206 cases	NA	8q24.22	8	130605604	Intergenic	ASAP1-IT1 - ADCY8	29065	114		      309.07	      174.70	rs16904316-C	rs16904316	0	16904316	Intergenic	1	0.03	2E-6	5.698970004336018		NR	NR	Affymetrix [398,699]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	2p22.3	2	33302232	LTBP1	LTBP1			4052			rs41464348-T	rs41464348	0	41464348	intron	0	0.35	7E-6	5.154901959985742		    .37	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	2p16.1	2	55884174	EFEMP1	EFEMP1			2202			rs3791675-G	rs3791675	0	3791675	intron	0	0.23	4E-6	5.397940008672037		    .45	[NR] cm increase	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	3q23	3	141424588	ZBTB38, ACPL2	ZBTB38			253461			rs10513137-A	rs10513137	0	10513137	intron	0	0.26	8E-8	7.096910013008055		    .49	[NR] cm increase	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	6p21.31	6	34270737	HMGA1, C6orf1, NUDT3	TRNAI25			100189401			rs6918981-G	rs6918981	0	6918981		0	0.21	2E-8	7.698970004336018		    .55	[NR] cm increase	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	8q12.1	8	56188232	PLAG1	PLAG1			5324			rs13273123-C	rs13273123	0	13273123	intron	0	0.07	3E-6	5.522878745280337		    .75	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	8q24.11	8	117815600	EXT1	EXT1			2131			rs11989122-T	rs11989122	0	11989122	intron	0	0.48	6E-6	5.221848749616356		    .36	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	9p22.3	9	14898163	FREM1	FREM1			158326			rs10961780-G	rs10961780	0	10961780	intron	0	0.33	2E-6	5.698970004336018		    .40	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	9q22.32	9	94552459	FBP2	YRDCP1 - FBP2	100420501	8789		      119.20	        6.26	rs16910061-T	rs16910061	0	16910061	Intergenic	1	0.14	3E-6	5.522878745280337		    .53	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	17q21.2	17	40890629	KRT23, KRT20	KRT20 - KRT23	54474	25984		        5.39	       32.07	rs2315504-C	rs2315504	0	2315504	Intergenic	1	0.01	8E-6	5.096910013008055		   1.90	[NR] cm increase	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	17q23.2	17	61419288	C17orf82, TBX2, TBX4	C17orf82 - TBX4	388407	9496		        6.01	       32.49	rs2079795-T	rs2079795	0	2079795	Intergenic	1	0.33	3E-6	5.522878745280337		    .40	[NR] cm increase	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	6p21.1	6	44999753	SUPT3H	SUPT3H			8464			rs10948197-C	rs10948197	0	10948197	intron	0	0.34	8E-6	5.096910013008055		    .51	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	9q31.3	9	110183125	PALM2-AKAP2	AKAP2 - TRNAR6	11217	100189025		       10.61	       15.40	rs7032940-A	rs7032940	0	7032940	Intergenic	1	0.21	3E-6	5.522878745280337		   1.32	[NR] cm increase	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	12q23.2	12	102119753	NUP37, C12orf48, PMCH	PARPBP;NUP37			55010;79023			rs2292303-C	rs2292303	0	2292303	nearGene-5;intron	0	0.30	8E-6	5.096910013008055		    .51	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	12q23.2	12	102332560	IGF1	PMCH - IGF1	5367	3479		      134.72	       63.31	rs1520223-C	rs1520223	0	1520223	Intergenic	1	0.26	9E-7	6.045757490560675		    .56	[NR] cm decrease	Affymetrix [334,546]	N
12/04/2009	19893584	Kim JJ	11/06/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19893584	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	20q13.32	20	58221728	ANKRD60	ANKRD60			140731			rs4811971-C	rs4811971	0	4811971	intron	0	0.39	6E-6	5.221848749616356		    .70	[NR] cm increase	Affymetrix [334,546]	N
12/04/2009	19897590	Schaefer AS	11/06/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19897590?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3	A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis.	Periodontitis	283 European ancestry cases, 972 European ancestry controls	155 European ancestry cases, 341 European ancestry controls	9q34.3	9	135637876	GLT6D1	GLT6D1			360203			rs1537415-G	rs1537415	0	1537415	intron	0	0.38	6E-9	8.221848749616356		   1.59	[1.36-1.86] 	Affymetrix [345,646]	N
12/03/2009	19890347	Birlea SA	11/05/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19890347?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	6q27	6	168540944	SMOC2	SMOC2			64094			rs13208776-?	rs13208776	0	13208776	intron	0	0.38	9E-8	7.045757490560674		NR	NR	Illumina [297,342]	N
12/03/2009	19890347	Birlea SA	11/05/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19890347?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	21q22.11	21	32008727	HUNK	HUNK - LINC00159	30811	100551499		        4.66	       71.75	rs2833607-?	rs2833607	0	2833607	Intergenic	1	0.26	2E-6	5.698970004336018		NR	NR	Illumina [297,342]	N
12/03/2009	19890347	Birlea SA	11/05/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19890347?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	18q21.31	18	57787145	ATP8B1	ATP8B1			5205			rs10503019-?	rs10503019	0	10503019	intron	0	0.28	3E-6	5.522878745280337		NR	NR	Illumina [297,342]	N
12/03/2009	19890347	Birlea SA	11/05/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19890347?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	2p16.3	2	47617366	KCNK12	KCNK12 - RPL18AP6	56660	285053		       47.04	       73.30	rs6544997-?	rs6544997	0	6544997	Intergenic	1	0.47	7E-6	5.154901959985742		NR	NR	Illumina [297,342]	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	1	152110849	TCHH	TCHH			7062			rs11803731-A	rs11803731	0	11803731	missense	0	0.82	3E-31	30.52287874528034		   6.11	[NR] % variance	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	4q21.21	4	78359539	FRAS1	FRAS1			80144			rs1268789-T	rs1268789	0	1268789	intron	0	NR	7E-8	7.154901959985742		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2p21	2	43360365	THADA	THADA			63892			rs6732426-T	rs6732426	0	6732426	intron	0	NR	1E-7	7		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	20p13	20	5057128	AL121890.2	RPS21P7 - TMEM230	100271366	29058		       43.40	       42.71	rs261360-A	rs261360	0	261360	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	14q31.1	14	81109110	TSHR	TSHR;LOC101928431			7253;101928431			rs8017455-T	rs8017455	0	8017455	intron;intron	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	8p23.2	8	5068943	AC019176.2	PAICSP4 - RSL24D1P7	780813	100129861		      227.04	        2.35	rs1454292-T	rs1454292	0	1454292	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	1	151922617	AL450992.4	THEM4 - KRT8P28	117145	391099		       12.73	       26.78	rs10788819-T	rs10788819	0	10788819	Intergenic	1	NR	2E-8	7.698970004336018		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2q35	2	218891661	WNT10A	WNT10A			80326			rs7349332-T	rs7349332	0	7349332	intron	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2p24.3	2	15821475	AC113608.1	DDX1 - RNU5E-7P	1653	100873836		      190.36	       43.46	rs7586898-C	rs7586898	0	7586898	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2p21	2	46407506	AC016912.4	EPAS1 - TMEM247	2034	388946		       20.80	       72.06	rs12623288-A	rs12623288	0	12623288	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	4q32.2	4	162816969	NAF1	TOMM22P4 - NAF1	100874517	92345		      294.93	      267.07	rs6840361-C	rs6840361	0	6840361	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	1	152482115	LCE5A	CRNN - LCE5A	49860	254910		       67.84	       28.73	rs908922-A	rs908922	0	908922	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	1	152065039	AL591893.2	S100A11 - SPTLC1P4	6282	100874500		       28.00	       12.91	rs3124314-T	rs3124314	0	3124314	Intergenic	1	NR	4E-6	5.397940008672037		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2p25.1	2	11897053	AC096559.2	MIR4262 - ST13P1	100422996	729992		       60.07	      126.51	rs17605562-T	rs17605562	0	17605562	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [~1 million] (imputed)	N
12/04/2009	19896111	Medland SE	11/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19896111?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	4q25	4	109904478	EGF	KRT19P3 - EGF	442114	1950		       24.58	        8.41	rs17316633-A	rs17316633	0	17316633	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [~1 million] (imputed)	N
12/28/2009	19929986	Craig DW	11/01/2009	Diabet Med	http://www.ncbi.nlm.nih.gov/pubmed/19929986?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide SNP genotyping study using pooled DNA to identify candidate markers mediating susceptibility to end-stage renal disease attributed to Type 1 diabetes.	End-stage renal disease	547 Caucasian cases, 549 Caucasian controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [474,050] (pooled)	N
12/01/2009	19880490	Tanaka T	10/30/2009	Blood	http://www.ncbi.nlm.nih.gov/pubmed/19880490?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association analysis of serum iron concentrations.	Iron levels	1,919 European ancestry individuals	569 females	22q12.3	22	37073551	TMPRSS6	TMPRSS6			164656			rs4820268-A	rs4820268	0	4820268	cds-synon	0	0.54	5E-9	8.301029995663981		   4.39	[2.90-5.88] ug/dL increase	Illumina [475,322]	N
12/01/2009	19874204	Guo Y	10/29/2009	J Bone Miner Res	http://www.ncbi.nlm.nih.gov/pubmed/19874204?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	IL21R and PTH may underlie variation of femoral neck bone mineral density as revealed by a genome-wide association study.	Bone mineral density	983 European ancestry individuals	2,557 European ancestry individuals from 750 families	11p15.2	11	13598625	PTH	PTH - HMGN2P36	5741	100874480		      102.61	       11.77	rs9630182-T	rs9630182	0	9630182	Intergenic	1	0.38	4E-7	6.397940008672037		    .11	[NR] s.d. increase	Affymetrix [342,854]	N
12/01/2009	19874204	Guo Y	10/29/2009	J Bone Miner Res	http://www.ncbi.nlm.nih.gov/pubmed/19874204?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	IL21R and PTH may underlie variation of femoral neck bone mineral density as revealed by a genome-wide association study.	Bone mineral density	983 European ancestry individuals	2,557 European ancestry individuals from 750 families	16p12.1	16	27423606	IL21R	IL21R			50615			rs8057551-G	rs8057551	0	8057551	intron	0	0.32	2E-6	5.698970004336018		    .11	[NR] s.d. increase	Affymetrix [342,854]	N
11/20/2009	19875614	Paterson AD	10/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19875614?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genome-wide association study identifies a novel major locus for glycemic control in type 1 diabetes, as measured by both A1C and glucose.	Glycemic control in type 1 diabetes (HbA1c)	667 European ancestry conventional treatment cases, 637 European ancestry intensive treatment cases	1,382 European ancestry cases, up to 36,585 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix and Illumina [2,518,578] (imputed)	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	2p12	2	82802345	Intergenic	LRRTM1 - MTND4P25	347730	100873246		     2497.75	       12.62	rs17022444-?	rs17022444	0	17022444	Intergenic	1	NR	1E-10	10	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	11q24.1	11	123725219	ZNF202	ZNF202			7753			rs2126709-?	rs2126709	0	2126709	UTR-3	0	NR	4E-7	6.397940008672037	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	9p21.3	9	22770887	Intergenic	LINC01239			441389			rs10811771-?	rs10811771	0	10811771	intron	0	NR	8E-7	6.096910013008056	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	9q33.1	9	118268751	Intergenic	TPT1P9 - BRINP1	389787	1620		      185.28	      897.88	rs876347-?	rs876347	0	876347	Intergenic	1	NR	2E-6	5.698970004336018	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	14q32.2	14	98374106	Intergenic	C14orf64 - C14orf177	388011	283598		      395.98	      337.51	rs1459148-?	rs1459148	0	1459148	Intergenic	1	NR	2E-6	5.698970004336018	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	1q41	1	220741578	Intergenic	C1orf115 - MARC2	79762	54996		       42.42	        6.41	rs337161-?	rs337161	0	337161	Intergenic	1	NR	3E-6	5.522878745280337	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	1q41	1	220756014	MOSC2	MARC2			54996			rs1494373-?	rs1494373	0	1494373	intron	0	NR	6E-6	5.221848749616356	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	4q22.1	4	89057649	KIAA0914	FAM13A			10144			rs16996151-?	rs16996151	0	16996151	intron	0	NR	6E-6	5.221848749616356	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	9q33.2	9	120294359	Intergenic	MIR147A - CDK5RAP2	406939	55755		       49.31	       94.51	rs4837752-?	rs4837752	0	4837752	Intergenic	1	NR	6E-6	5.221848749616356	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	1p32.1	1	59333489	FGGY	FGGY			55277			rs17119280-?	rs17119280	0	17119280	intron	0	NR	7E-6	5.154901959985742	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	20q13.32	20	59215381	ZNF831	ZNF831			128611			rs12625057-?	rs12625057	0	12625057	intron	0	NR	7E-6	5.154901959985742	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	11p13	11	35679688	TRIM44	TRIM44			54765			rs7928794-?	rs7928794	0	7928794	intron	0	NR	8E-6	5.096910013008055	(SAS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	4q24	4	105536173	Intergenic	ATP5EP1 - ARHGEF38	23744	54848		        3.37	       16.38	rs7669317-?	rs7669317	0	7669317	Intergenic	1	NR	8E-8	7.096910013008055	(AIMS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	16p13.3	16	7177121	A2BP1	RBFOX1			54715			rs9302841-?	rs9302841	0	9302841	intron	0	NR	2E-6	5.698970004336018	(AIMS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	2q37.3	2	239496966	Intergenic	MIR2467 - FLJ45964	100616360	401040		      145.16	       81.34	rs6743931-?	rs6743931	0	6743931	Intergenic	1	NR	2E-6	5.698970004336018	(AIMS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	14q11.2	14	20489274	Intergenic	PNP - RNASE10	4860	338879		       11.27	       16.26	rs12147450-?	rs12147450	0	12147450	Intergenic	1	NR	6E-7	6.221848749616355	(BARS)	NR	NR	Affymetrix [492,000]	N
11/30/2009	19875103	Aberg K	10/27/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19875103?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 Other ancestry schizophrenia cases	NA	8p23.1	8	11261528	Intergenic	RPL19P13 - MTMR9	392193	66036		        4.85	       22.96	rs2251301-?	rs2251301	0	2251301	Intergenic	1	NR	1E-6	5.999999999999999	(BARS)	NR	NR	Affymetrix [492,000]	N
01/07/2010	20029952	Sebastiani P	10/23/2009	Am J Hematol	http://www.ncbi.nlm.nih.gov/pubmed/20029952?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Genetic modifiers of the severity of sickle cell anemia identified through a genome-wide association study.	Sickle cell anemia (severity)	177 African American severe cases, 1,088 African American mild cases	68 African American severe cases, 95 African American mild cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [~600,000]	N
08/18/2010	19853236	Ferreira MA	10/22/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19853236	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Hematology traits	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-C	rs7775698	0	7775698	Intergenic	1	0.74	8E-18	17.09691001300806	(MCV)	    .19	[0.15-0.23] s.d. decrease	Illumina & Perlegen [~2.5 million] (imputed)	N
08/18/2010	19853236	Ferreira MA	10/22/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19853236	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Hematology traits	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	22q12.3	22	37073551	TMPRSS6	TMPRSS6			164656			rs4820268-A	rs4820268	0	4820268	cds-synon	0	0.53	4E-12	11.39794000867204	(MCV)	    .13	[0.09-0.17] s.d. increase	Illumina & Perlegen [~2.5 million] (imputed)	N
08/18/2010	19853236	Ferreira MA	10/22/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19853236	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Hematology traits	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6q23.3	6	135097497	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.07	       83.82	rs7775698-C	rs7775698	0	7775698	Intergenic	1	0.74	5E-13	12.30102999566398	(MCH)	    .19	[0.13-0.25] s.d. decrease	Illumina & Perlegen [~2.5 million] (imputed)	N
08/18/2010	19853236	Ferreira MA	10/22/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19853236	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Hematology traits	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	22q12.3	22	37073551	TMPRSS6	TMPRSS6			164656			rs4820268-A	rs4820268	0	4820268	cds-synon	0	0.53	3E-10	9.522878745280336	(MCH)	    .15	[0.11-0.19] s.d. increase	Illumina & Perlegen [~2.5 million] (imputed)	N
08/18/2010	19853236	Ferreira MA	10/22/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19853236	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Hematology traits	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6p22.2	6	25842723	HFE	SLC17A1 - SLC17A3	6568	10786		       10.66	        2.38	rs1408272-T	rs1408272	0	1408272	Intergenic	1	0.94	1E-11	11	(MCH)	    .32	[0.22-0.42] s.d. decrease	Illumina & Perlegen [~2.5 million] (imputed)	N
08/18/2010	19853236	Ferreira MA	10/22/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19853236	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Hematology traits	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	6q23.3	6	135097880	HBS1L,MYB	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-T	rs9399137	0	9399137	Intergenic	1	0.74	1E-9	8.999999999999998	(PLT)	    .16	[0.10-0.22] s.d. decrease	Illumina & Perlegen [~2.5 million] (imputed)	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	1p36.33	1	1070426	NR	AGRN - RNF223	375790	401934		       14.31	        1.32	rs3934834-G	rs3934834	0	3934834	Intergenic	1	0.80	6E-7	6.221848749616355	(females + males)	    .11	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	2q36.1	2	221936980	NR	RPL23P5 - HSPA9P1	402120	266724		      344.05	       24.69	rs824931-G	rs824931	0	824931	Intergenic	1	0.35	3E-6	5.522878745280337	(females + males)	    .07	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	3p13	3	70414179	NR	UQCRHP4 - COX6CP6	100128448	100289131		      273.69	      336.89	rs1024889-G	rs1024889	0	1024889	Intergenic	1	0.28	6E-6	5.221848749616356	(males)	    .12	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	4q34.3	4	179743500	NR	RNA5SP173 - LINC00290	100873437	728081		     1336.67	     1320.59	rs2383393-G	rs2383393	0	2383393	Intergenic	1	0.63	2E-6	5.698970004336018	(males)	    .10	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	9p22.3	9	15986718	NR	RNU6-14P - C9orf92	100873746	100129385		      210.43	      217.22	rs1927702-G	rs1927702	0	1927702	Intergenic	1	0.42	6E-6	5.221848749616356	(females)	    .08	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	11q14.1	11	81274505	NR	ARL6IP1P3 - MIR4300	729790	100422823		      620.52	      616.24	rs1458095-G	rs1458095	0	1458095	Intergenic	1	0.90	7E-6	5.154901959985742	(females)	    .19	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	19p13.3	19	2160530	NR	AP3D1 - DOT1L	8943	84444		        8.91	        3.62	rs3803915-C	rs3803915	0	3803915	Intergenic	1	0.89	5E-6	5.301029995663981	(females + males)	    .13	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	19q13.41	19	51270548	NR	SIGLECL1 - SIGLEC24P	284369	114196		        1.22	       10.29	rs1878047-G	rs1878047	0	1878047	Intergenic	1	0.37	5E-6	5.301029995663981	(females + males)	    .06	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	3q28	3	188703109	NR	LPP			4026			rs1152846-G	rs1152846	0	1152846	intron	0	0.77	3E-6	5.522878745280337	(females +males)	    .09	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	5q35.3	5	180743819	NR	OR2Y1 - MGAT1	134083	4245		        3.76	       46.72	rs12517906-G	rs12517906	0	12517906	Intergenic	1	0.85	6E-6	5.221848749616356	(females)	    .16	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	3q28	3	188703109	NR	LPP			4026			rs1152846-G	rs1152846	0	1152846	intron	0	0.77	6E-6	5.221848749616356	(females + males)	   1.70	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	5q35.3	5	180743819	MGAT1	OR2Y1 - MGAT1	134083	4245		        3.76	       46.72	rs12517906-G	rs12517906	0	12517906	Intergenic	1	0.85	7E-8	7.154901959985742	(females)	   2.96	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	9p13.3	9	35141708	NR	FAM214B - UNC13B	80256	10497		       25.37	       20.27	rs10972341-G	rs10972341	0	10972341	Intergenic	1	0.60	9E-6	5.045757490560675	(males)	   2.32	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	10q22.1	10	70723254	NR	ADAMTS14			140766			rs1816002-G	rs1816002	0	1816002	intron	0	0.46	8E-6	5.096910013008055	(females)	   2.08	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	10q22.2	10	75049002	NR	DUPD1			338599			rs7919006-G	rs7919006	0	7919006	intron	0	0.95	4E-6	5.397940008672037	(females)	   4.00	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	12p11.21	12	32227567	NR	BICD1			636			rs10844154-C	rs10844154	0	10844154	intron	0	0.54	4E-6	5.397940008672037	(females)	   1.87	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	13q12.12	13	23930816	NR	ANKRD20A19P			400110			rs2765086-G	rs2765086	0	2765086	intron	0	0.94	6E-6	5.221848749616356	(females)	   3.86	[NR] kg decrease	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	17q24.1	17	66137608	NR	CEP112			201134			rs7209395-G	rs7209395	0	7209395	intron	0	0.23	3E-6	5.522878745280337	(females + males)	   1.75	[NR] kg increase	Illumina [318,237]	N
11/18/2009	19851299	Johansson A	10/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19851299?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NR	18q11.2	18	25677222	NR	ZNF521 - SS18	25925	6760		      324.97	      339.03	rs1840440-G	rs1840440	0	1840440	Intergenic	1	0.61	3E-7	6.522878745280337	(females)	   2.16	[NR] kg increase	Illumina [318,237]	N
11/25/2009	19846067	Garriock HA	10/19/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19846067?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	7q36.3	7	157087704	UBE3C	MNX1-AS1 - UBE3C	645249	9690		       71.28	       51.26	rs6966038-?	rs6966038	0	6966038	Intergenic	1	0.19	5E-7	6.30102999566398	(response)	   1.64	[1.35-1.99] 	Affymetrix [430,198]	N
11/25/2009	19846067	Garriock HA	10/19/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19846067?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	20q13.31	20	57063694	BMP7	PTMAP6 - BMP7	170542	655		      362.18	      105.06	rs6127921-?	rs6127921	0	6127921	Intergenic	1	0.82	3E-6	5.522878745280337	(response)	   1.64	[1.33-2.04] 	Affymetrix [430,198]	N
11/25/2009	19846067	Garriock HA	10/19/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19846067?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	15q22.2	15	61037589	RORA	RORA			6095			rs809736-?	rs809736	0	809736	intron	0	0.17	8E-6	5.096910013008055	(response)	   1.52	[1.27-1.83] 	Affymetrix [430,198]	N
11/25/2009	19846067	Garriock HA	10/19/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19846067?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	7q36.3	7	157087704	UBE3C	MNX1-AS1 - UBE3C	645249	9690		       71.28	       51.26	rs6966038-?	rs6966038	0	6966038	Intergenic	1	0.20	4E-7	6.397940008672037	(remission)	   1.68	[1.37-2.04] 	Affymetrix [430,198]	N
11/25/2009	19846067	Garriock HA	10/19/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19846067?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	20q13.31	20	57063694	BMP7	PTMAP6 - BMP7	170542	655		      362.18	      105.06	rs6127921-?	rs6127921	0	6127921	Intergenic	1	0.81	1E-6	5.999999999999999	(remission)	   1.75	[1.39-2.17] 	Affymetrix [430,198]	N
11/25/2009	19846067	Garriock HA	10/19/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19846067?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	21q21.3	21	27293028	EIF4A1P	GPX1P2 - EIF4A1P1	2884	54052		      149.03	       73.98	rs2830840-?	rs2830840	0	2830840	Intergenic	1	0.46	5E-6	5.301029995663981	(remission)	   1.47	[1.23-1.72] 	Affymetrix [430,198]	N
11/25/2009	19846067	Garriock HA	10/19/2009	Biol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19846067?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	18q12.1	18	34065415	NOL4	NOL4			8715			rs7239368-?	rs7239368	0	7239368	intron	0	0.42	9E-6	5.045757490560675	(remission)	   1.45	[1.22-1.69] 	Affymetrix [430,198]	N
11/12/2009	19850125	Kim HJ	10/19/2009	Neurobiol Dis	http://www.ncbi.nlm.nih.gov/pubmed/19850125?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Common CYP7A1 promoter polymorphism associated with risk of neuromyelitis optica.	Neuromyelitis optica	53 Korean ancestry cases, 240 Korean ancestry controls	37 Korean ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [288,025]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	1q25.1	1	173222336	TNFSF4	TNFSF4 - RPL26P11	7292	730070		       15.00	      123.52	rs2205960-A	rs2205960	0	2205960	Intergenic	1	0.27	3E-32	31.52287874528033		   1.46	[1.37-1.56] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	2p22.3	2	33476823	RASGRP3	RASGRP3			25780			rs13385731-A	rs13385731	0	13385731	intron	0	0.85	1E-15	15		   1.43	[1.32-1.56] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-A	rs7574865	0	7574865	intron	0	0.33	5E-42	41.30102999566397		   1.51	[1.43-1.61] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	5q33.1	5	151078585	TNIP1	TNIP1			10318			rs10036748-A	rs10036748	0	10036748	intron	0	0.76	2E-9	8.698970004336019		   1.23	[1.15-1.33] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6q21	6	106120159	PRDM1, ATG5	PRDM1 - ATG5	639	9474		       10.22	       64.32	rs548234-G	rs548234	0	548234	Intergenic	1	0.26	5E-12	11.30102999566398		   1.25	[1.17-1.33] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6q23.3	6	137874929	TNFAIP3	TNFAIP3			7128			rs2230926-C	rs2230926	0	2230926	missense	0	0.04	1E-17	17		   1.72	[1.52-1.94] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	7p12.2	7	50266267	IKZF1	C7orf72 - IKZF1	100130988	10320		      107.01	       38.52	rs4917014-A	rs4917014	0	4917014	Intergenic	1	0.68	3E-23	22.52287874528034		   1.39	[1.30-1.47] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	7q11.23	7	75543861	NR	HIP1			3092			rs1167796-G	rs1167796	0	1167796	intron	0	0.71	2E-8	7.698970004336018		   1.20	[1.12-1.28] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	7q32.1	7	128933913	IRF5	KCP - IRF5	375616	3663		       23.19	        4.03	rs4728142-A	rs4728142	0	4728142	Intergenic	1	0.13	8E-19	18.09691001300805		   1.43	[1.32-1.54] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	8p23.1	8	11482672	BLK	FAM167A - BLK	83648	640		       15.91	       11.34	rs7812879-G	rs7812879	0	7812879	Intergenic	1	0.76	2E-24	23.69897000433602		   1.45	[1.35-1.56] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	10q11.23	10	48911009	LRRC18, WDFY4	WDFY4;LRRC18			57705;474354			rs1913517-A	rs1913517	0	1913517	intron;intron	0	0.29	7E-12	11.15490195998574		   1.24	[1.17-1.32] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	11q23.3	11	118702810	NR	TREH - DDX6	11181	1656		       23.14	       44.95	rs4639966-G	rs4639966	0	4639966	Intergenic	1	0.30	1E-16	16		   1.29	[1.22-1.37] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	11q24.3	11	128441164	ETS1	KIRREL3-AS3 - ETS1	283165	2113		     1435.11	       17.60	rs6590330-A	rs6590330	0	6590330	Intergenic	1	0.34	2E-25	24.69897000433602		   1.37	 [1.29-1.45)	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	12q24.33	12	128816149	SLC15A4	SLC15A4			121260			rs1385374-A	rs1385374	0	1385374	intron	0	0.20	2E-11	10.69897000433602		   1.26	[1.18-1.35] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	16p11.2	16	30631546	NR	ZNF689 - PRR14	115509	78994		       20.77	       19.17	rs7197475-A	rs7197475	0	7197475	Intergenic	1	0.08	3E-8	7.522878745280337		   1.31	[1.20-1.46] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	22q11.21	22	21562901	HIC2, UBE2L3	UBE2L3			7332			rs131654-A	rs131654	0	131654	intron	0	0.48	1E-16	16		   1.28	[1.20-1.35] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	16p11.2	16	30624338	NR	ZNF689 - PRR14	115509	78994		       13.56	       26.38	rs7186852-A	rs7186852	0	7186852	Intergenic	1	0.08	3E-7	6.522878745280337		   1.29	[1.17-1.42] 	Illumina [493,955]	N
11/09/2009	19838193	Han JW	10/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19838193?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	6p21.32	6	32608701	HLA-DRB1	TRNAI25			100189401			rs9271100-?	rs9271100	0	9271100		0	NR	1E-12	12		   1.90	[1.59-2.27] 	Illumina [493,955]	N
11/09/2009	19836008	Landi MT	10/15/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19836008?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-G	rs2736100	0	2736100	intron	0	0.50	2E-10	9.698970004336017		   1.12	[1.08-1.16] 	Illumina [515,922]	N
11/09/2009	19836008	Landi MT	10/15/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19836008?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	15q25.1	15	78601997	CHRNA3, CHRNA5	CHRNA3			1136			rs1051730-T	rs1051730	0	1051730	STOP-GAIN	0	0.35	2E-51	50.69897000433601		   1.31	[1.27-1.36] 	Illumina [515,922]	N
11/09/2009	19836008	Landi MT	10/15/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19836008?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	5p15.33	5	1342599	CLPTM1L	CLPTM1L			81037			rs31489-C	rs31489	0	31489	intron	0	0.59	2E-10	9.698970004336017		   1.12	[1.09-1.16] 	Illumina [515,922]	N
11/09/2009	19836008	Landi MT	10/15/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19836008?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p21.33	6	31652743	BAT3, APOM	BAG6;APOM			7917;55937			rs3117582-C	rs3117582	0	3117582	intron;intron	0	0.10	5E-12	11.30102999566398		   1.22	[1.15-1.29] 	Illumina [515,922]	N
11/09/2009	19836008	Landi MT	10/15/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19836008?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	6p22.1	6	28808340	TRNAA-UGC	TRNAI25			100189401			rs4324798-A	rs4324798	0	4324798		0	0.09	2E-8	7.698970004336018		   1.16	[1.09-1.24] 	Illumina [515,922]	N
11/05/2009	19820699	Benyamin B	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820699?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-T	rs855791	0	855791	missense	0	0.42	5E-7	6.30102999566398	(Hgb)	    .10	[0.06-0.14] s.d. decrease	Illumina & Perlegen [427,037]	N
11/05/2009	19820699	Benyamin B	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820699?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-T	rs855791	0	855791	missense	0	0.42	1E-10	10	(MCV)	    .13	[0.09-0.17] s.d. decrease	Illumina & Perlegen [427,037]	N
11/05/2009	19820699	Benyamin B	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820699?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.08	5E-7	6.30102999566398	(Hgb)	    .20	[0.12-0.28] s.d. increase	Illumina & Perlegen [427,037]	N
11/05/2009	19820699	Benyamin B	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820699?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	0.08	2E-8	7.698970004336018	(MCV)	    .22	[0.14-0.30] s.d. increase	Illumina & Perlegen [427,037]	N
11/05/2009	19820698	Chambers JC	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820698?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels.	Hemoglobin	6,316 European ancestry individuals, 9,685 Indian Asian ancestry individuals	5,187 European ancestry individuals, 6,721 Indian Asian ancestry individuals	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-A	rs855791	0	855791	missense	0	0.53	2E-13	12.69897000433602		    .13	[0.09-0.17] g/dl decrease	Affymetrix, Illumina & Perlegen [NR]	N
11/05/2009	19820698	Chambers JC	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820698?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels.	Hemoglobin	6,316 European ancestry individuals, 9,685 Indian Asian ancestry individuals	5,187 European ancestry individuals, 6,721 Indian Asian ancestry individuals	6p22.2	6	26107235	HFE	HIST1H1T			3010			rs198846-A	rs198846	0	198846	nearGene-3	0	NR	1E-8	8		NR	NR	Affymetrix, Illumina & Perlegen [NR]	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	2E-9	8.698970004336019		    .31	[0.21-0.41] % increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	6	135114363	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      134.93	       66.95	rs9483788-C	rs9483788	0	9483788	Intergenic	1	NR	3E-15	14.52287874528034		    .22	[0.16-0.28] % increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	7q22.1	7	100638347	TFR2	TFR2			7036			rs7385804-C	rs7385804	0	7385804	intron	0	NR	4E-10	9.397940008672037		    .15	[0.10-0.20] % decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	7q36.1	7	151717955	PRKAG2	PRKAG2			51422			rs10224002-G	rs10224002	0	10224002	intron	0	NR	6E-15	14.22184874961635		    .20	[0.15-0.25] % increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	10q22.1	10	69333636	HK1	HK1			3098			rs16926246-T	rs16926246	0	16926246	intron	0	NR	1E-13	13		    .33	[0.24-0.42] % increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	12q24.12	12	111634620	SH2B3, ATXN2	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-G	rs11065987	0	11065987	Intergenic	1	NR	1E-12	12		    .17	[0.12-0.22] % decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	22	37074184	TMPRSS6	TMPRSS6			164656			rs2413450-T	rs2413450	0	2413450	intron	0	NR	2E-13	12.69897000433602		    .17	[0.13-0.22] % decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	2p21	2	46133768	PRKCE	PRKCE			5581			rs10168349-C	rs10168349	0	10168349	intron	0	NR	4E-15	14.39794000867204		    .19	[0.14-0.23] % increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	2p21	2	46126027	PRKCE	PRKCE			5581			rs10495928-G	rs10495928	0	10495928	intron	0	NR	7E-13	12.15490195998574		    .06	[0.05-0.08] g/dl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	6E-19	18.22184874961635		    .16	[0.13-0.20] g/dl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	7q36.1	7	151717955	PRKAG2	PRKAG2			51422			rs10224002-G	rs10224002	0	10224002	intron	0	NR	3E-15	14.52287874528034		    .07	[0.05-0.09] g/dl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	10q22.1	10	69333636	HK1	HK1			3098			rs16926246-T	rs16926246	0	16926246	intron	0	NR	2E-11	10.69897000433602		    .11	[0.08-0.14] g/dl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	12q24.12	12	111634620	TRAFD1	ATXN2 - BRAP	6311	8315		       34.94	        7.53	rs11065987-A	rs11065987	0	11065987	Intergenic	1	NR	1E-11	11		    .06	[0.04-0.08] g/dl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	20q13.2	20	52701812	TSHZ2	TRNAI30P - RPL36P1	100189481	140697		       99.94	      188.35	rs6013509-A	rs6013509	0	6013509	Intergenic	1	NR	1E-10	10		    .06	[0.05-0.08] g/dl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	22	37066896	TMPRSS6	TMPRSS6			164656			rs855791-A	rs855791	0	855791	missense	0	NR	3E-25	24.52287874528033		    .09	[0.07-0.11] g/dl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	3q29	3	196082268	TFRC	TFRC			7037			rs11915082-A	rs11915082	0	11915082	nearGene-5	0	NR	8E-13	12.09691001300806		    .00	[0.003-0.005] pg increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	6	25842723	SLC17A3	SLC17A1 - SLC17A3	6568	10786		       10.66	        2.38	rs1408272-G	rs1408272	0	1408272	Intergenic	1	NR	4E-39	38.39794000867203		    .02	[0.01-0.02] pg decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6p21.1	6	41957421	CCND3, BYSL	CCND3			896			rs9349205-A	rs9349205	0	9349205	intron	0	NR	8E-20	19.09691001300806		    .01	[0.004-0.006] pg decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	6	135097778	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      118.35	       83.54	rs7776054-G	rs7776054	0	7776054	Intergenic	1	NR	7E-69	68.15490195998574		    .01	[0.009-0.0111] pg decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	6q24.1	6	139517282	CITED2	CITED2 - ATP5F1P6	10370	645440		      142.63	       97.16	rs628751-C	rs628751	0	628751	Intergenic	1	NR	1E-17	17		    .00	[0.003-0.005] pg decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	9p24.1	9	4856877	RCL1	RCL1			10171			rs10758658-A	rs10758658	0	10758658	intron	0	NR	2E-14	13.69897000433602		    .00	[0.004-0.006] pg decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	16p13.3	16	259156	ITFG3	ITFG3			83986			rs1122794-A	rs1122794	0	1122794	intron	0	NR	3E-10	9.522878745280336		    .00	[0.003-0.006] pg increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	19p13.2	19	12890733	GCDH	GCDH			2639			rs11085824-G	rs11085824	0	11085824	nearGene-5	0	NR	1E-11	11		    .00	[0.003-0.005] pg decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	22	37074184	TMPRSS6	TMPRSS6			164656			rs2413450-T	rs2413450	0	2413450	intron	0	NR	9E-34	33.04575749056067		    .01	[0.0005-0.007] pg decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	2p16.1	2	60381624	BCL11A	RNA5SP94 - MIR4432	100873327	100616473		      686.76	        5.74	rs2540917-C	rs2540917	0	2540917	Intergenic	1	NR	1E-14	14		    .00	[0.002-0.004] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	3q29	3	196073676	TFRC	TFRC			7037			rs9859260-C	rs9859260	0	9859260	intron	0	NR	8E-14	13.09691001300805		    .00	[0.002-0.004] fl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	4q12	4	54541595	KIT	PDGFRA - KIT	5156	3815		      243.35	      116.33	rs172629-G	rs172629	0	172629	Intergenic	1	NR	1E-15	15		    .00	[0.003-0.006] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	1E-46	45.99999999999999		    .01	[0.010-0.014] fl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6p21.1	6	41957421	CCND3, BYSL	CCND3			896			rs9349205-A	rs9349205	0	9349205	intron	0	NR	1E-31	31		    .01	[0.004-0.006] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6q21	6	109295217	CD164	CCDC162P			221262			rs9374080-C	rs9374080	0	9374080	intron	0	NR	4E-10	9.397940008672037		    .00	[0.002-0.003] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	6	135105435	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      126.00	       75.88	rs4895441-G	rs4895441	0	4895441	Intergenic	1	NR	7E-86	85.15490195998574		    .01	[0.007-0.009] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	6q24.1	6	139518286	CITED2	CITED2 - ATP5F1P6	10370	645440		      143.64	       96.16	rs643381-A	rs643381	0	643381	Intergenic	1	NR	5E-25	24.30102999566398		    .00	[0.003-0.005] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	7p12.2	7	50360730	IKZF1	IKZF1;LOC102723522			10320;102723522			rs12718597-A	rs12718597	0	12718597	intron;nearGene-5	0	NR	5E-13	12.30102999566398		    .00	[0.002-0.004] fl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	7q22.1	7	100616392	TFR2	MOSPD3 - TFR2	64598	7036		        1.01	        4.02	rs7786877-G	rs7786877	0	7786877	Intergenic	1	NR	3E-11	10.52287874528034		    .00	[0.002-0.004] fl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	9p24.1	9	4856877	RCL1	RCL1			10171			rs10758658-A	rs10758658	0	10758658	intron	0	NR	3E-20	19.52287874528034		    .00	[0.003-0.005] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	10q11.21	10	45529281	MARCH8	MARCH8			220972			rs11239550-G	rs11239550	0	11239550	intron	0	NR	1E-10	10		    .00	[0.002-0.003] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	14q23.3	14	65008822	FNTB	FNTB;MAX;CHURC1-FNTB			2342;4149;100529261			rs4466998-A	rs4466998	0	4466998	intron;intron;intron	0	NR	5E-8	7.30102999566398		    .00	[0.001-0.003] fl increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	16p13.3	16	254804	ITFG3	ITFG3			83986			rs7189020-T	rs7189020	0	7189020	intron	0	NR	2E-12	11.69897000433602		    .00	[0.002-0.004] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	19p13.2	19	12821455	RTBDN	RNASEH2A - RTBDN	10535	83546		        7.81	        4.02	rs7255045-A	rs7255045	0	7255045	Intergenic	1	NR	2E-12	11.69897000433602		    .00	[0.002-0.004] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	22	37074184	TMPRSS6	TMPRSS6			164656			rs2413450-T	rs2413450	0	2413450	intron	0	NR	3E-41	40.52287874528033		    .01	[0.004-0.006] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	22q13.33	22	50533323	ECGF1	ODF3B			440836			rs131794-A	rs131794	0	131794	nearGene-5	0	NR	1E-15	15		    .00	[0.003-0.005] fl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	1q23.1	1	158642758	SPTA1	SPTA1			6708			rs857721-A	rs857721	0	857721	intron	0	NR	1E-10	10	(MCHC)	    .00	[0.001-0.002] g/dl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	6	135102071	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      122.64	       79.24	rs9373124-C	rs9373124	0	9373124	Intergenic	1	NR	7E-14	13.15490195998574	(MCHC)	    .00	[0.002-0.003] g/dl decrease	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	6q23.3	6	135114363	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      134.93	       66.95	rs9483788-G	rs9483788	0	9483788	Intergenic	1	NR	1E-47	47	(RBC)	    .00	[0.012-0.016] 1 M cells/mm^3 increase	Affymetrix & Illumina [~2.5 million](imputed)	N
11/03/2009	19862010	Ganesh SK	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19862010?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	7q22.1	7	100747483	EPO	ZAN			7455			rs2075671-A	rs2075671	0	2075671	intron	0	NR	1E-9	8.999999999999998	(RBC)	    .00	[0.005-0.009] 1 M cell/mm^3 increase	Affymetrix & Illumina [~2.5 million](imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	22q12.3	22	37071352	TMPRSS6	TMPRSS6			164656			rs5756506-C	rs5756506	0	5756506	intron	0	NR	1E-9	8.999999999999998	(MCH)	    .14	[0.10-0.18] pg increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.1	6	41957552	BYSL, CCND3	CCND3			896			rs11970772-T	rs11970772	0	11970772	intron	0	NR	7E-19	18.15490195998574	(MCV)	    .58	[0.44-0.70] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-A	rs1800562	0	1800562	missense	0	NR	1E-23	23	(MCV)	   1.41	[1.13-1.69] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	22q12.3	22	32471541	FBX07	BPIFC - FBXO7	254240	25793		        7.10	        3.18	rs9609565-G	rs9609565	0	9609565	Intergenic	1	NR	4E-10	9.397940008672037	(MCV)	    .37	[0.25-0.49] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6q23.3	6	135106679	HBS1L, MYB	MIR3662 - MYB	100500880	4602		      127.25	       74.64	rs9402686-A	rs9402686	0	9402686	Intergenic	1	NR	7E-42	41.15490195998574	(MCV)	    .82	[0.70-0.94] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	7q22.1	7	100638347	TFR2	TFR2			7036			rs7385804-C	rs7385804	0	7385804	intron	0	NR	5E-10	9.301029995663981	(RBC)	    .01	[0.004-0.008] 10^12/l increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6q21	6	109768846	Intergenic	FIG4			9896			rs4947019-G	rs4947019	0	4947019	intron	0	NR	8E-6	5.096910013008055	(MCV)	    .01	[0.003-0.011] fl decrease	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	12q24.13	12	112433568	PTPN11	PTPN11			5781			rs11066301-G	rs11066301	0	11066301	intron	0	NR	8E-12	11.09691001300806	(PLT)	   4.65	[3.32-5.98] 10^9/l increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	20q11.21			BAK1	 - 						rs210135-A	rs210135					NR	4E-10		(PLT)	   5.44	[3.74-7.14] 10^9/l increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	9p24.1	9	4763176	AK3	AK3 - ECM1P1	50808	100420354		       21.13	        5.45	rs385893-C	rs385893	0	385893	Intergenic	1	NR	9E-17	16.04575749056067	(PLT)	   6.26	[4.78-7.74] 10^9/l increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	17q21.1	17	39954436	GSDMA, ORMDL3	LRRC3C - GSDMA	100505591	284110		        9.70	        8.54	rs17609240-G	rs17609240	0	17609240	Intergenic	1	NR	9E-9	8.045757490560675	(WBC)	    .02	[0.01-0.03] 10^9/l increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	6p21.32	6	32445682	Intergenic	TRNAI25			100189401			rs2227139-G	rs2227139	0	2227139		0	NR	1E-7	7	(WBC)	    .02	[0.01-0.03] 10^9/l increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	1q24.3	1	171980610	DNM3	DNM3			26052			rs10914144-C	rs10914144	0	10914144	intron	0	NR	2E-14	13.69897000433602		    .01	[0.009-0.017] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	15q22.2	15	63049797	TPM1	TPM1			7168			rs11071720-T	rs11071720	0	11071720	intron	0	NR	2E-8	7.698970004336018		    .01	[0.007-0.015] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	11p15.5	11	202856	BET1L	BET1L			51272			rs11602954-G	rs11602954	0	11602954	intron	0	NR	1E-14	14		    .01	[0.009-0.017] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	3p14.3	3	56831748	ARHGEF3	ARHGEF3			50650			rs12485738-A	rs12485738	0	12485738	intron	0	NR	6E-31	30.22184874961636		    .02	[0.013-0.017] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	1q32.1	1	205266862	TMCC2	TMCC2			9911			rs1668873-G	rs1668873	0	1668873	intron	0	NR	1E-20	20		    .01	[0.01-0.014] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	17q11.2	17	29376331	TAOK1	RPL35AP35 - MIR4523	100271636	100616122		       35.46	       14.33	rs2138852-T	rs2138852	0	2138852	Intergenic	1	NR	1E-22	22		    .02	[0.012-0.020] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	10q21.3	10	63373396	JMJD1C	JMJD1C;MIR1296			221037;100302150			rs2393967-A	rs2393967	0	2393967	intron;nearGene-5	0	NR	3E-21	20.52287874528034		    .01	[0.01-0.018] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	7q22.3	7	106731773	PIK3CG	CCDC71L - RNA5SP236	168455	100873494		       70.59	       49.83	rs342293-G	rs342293	0	342293	Intergenic	1	NR	2E-33	32.69897000433601		    .02	[0.013-0.017] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	20p13	20	1943088	SIRPA	SIRPA - PDYN	140885	5173		        3.19	       35.67	rs6136489-T	rs6136489	0	6136489	Intergenic	1	NR	8E-11	10.09691001300805		    .01	[0.006-0.014] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	2p23.1	2	31241963	EHD3	EHD3			30845			rs647316-A	rs647316	0	647316	intron	0	NR	3E-11	10.52287874528034		    .01	[0.006-0.014] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	12q24.31	12	121927677	WDR66	WDR66			144406			rs7961894-T	rs7961894	0	7961894	intron	0	NR	3E-44	43.52287874528033		    .03	[0.027-0.035] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	18q22.2	18	69849609	CD226	DOK6 - CD226	220164	10666		         .52	       13.35	rs893001-C	rs893001	0	893001	Intergenic	1	NR	1E-10	10		    .01	[0.007-0.015] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	5q33.3	5	159176563	NR	RNF145			153830			rs1473247-C	rs1473247	0	1473247	intron	0	NR	3E-7	6.522878745280337		    .01	[0.004-0.012] fl decrease	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	20p12.1	20	14407569	NR	MACROD2			140733			rs6110278-T	rs6110278	0	6110278	intron	0	NR	4E-7	6.397940008672037		    .01	[0.005-0.013] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/30/2009	19820697	Soranzo N	10/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19820697?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	12q13.13	12	54293448	NR	NFE2			4778			rs10506328-A	rs10506328	0	10506328	intron	0	NR	5E-7	6.30102999566398		    .01	[0.004-0.012] fl increase	Affymetrix and Illumina [~2.11 million] (imputed)	N
10/23/2009	19812673	Weiss LA	10/08/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19812673?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide linkage and association scan reveals novel loci for autism.	Autism	1,553 probands from 1,031 families	2,073 trios	5p15.31	5	9623510	SEMA5A, TAS2R1	SNORD123 - TAS2R1	100113384	50834		       74.60	        5.49	rs10513025-?	rs10513025	0	10513025	Intergenic	1	NR	3E-7	6.522878745280337		   1.81	[NR] 	Affymetrix [~365,000]	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	1p31.3	1	68169707	GPR177	WLS;GNG12-AS1			79971;100289178			rs2566755-C	rs2566755	0	2566755	intron;intron	0	0.21	2E-12	11.69897000433602		    .10	[0.07-0.13] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	3p22.1	3	41096181	CTNNB1	RPS27P4 - MRPS31P1	389112	351449		      334.33	       92.85	rs87938-A	rs87938	0	87938	Intergenic	1	0.45	8E-10	9.096910013008054		    .07	[0.05-0.09] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	5q14.3	5	89080244	MEF2C	MEF2C-AS1 - MIR3660	101929423	100500825		       47.87	      936.38	rs1366594-C	rs1366594	0	1366594	Intergenic	1	0.45	1E-13	13		    .09	[0.07-0.11] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	7q21.3	7	96504219	FLJ42280	C7orf76			401388			rs7781370-T	rs7781370	0	7781370	nearGene-5	0	0.34	5E-12	11.30102999566398		    .08	[0.06-0.10] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	11p15.2	11	15672916	SOX6	LOC102724957			102724957			rs7117858-G	rs7117858	0	7117858	intron	0	0.20	6E-10	9.221848749616356		    .09	[0.06-0.12] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	16q24.1	16	86677054	FOXL1	FOXL1 - RPL39P30	2300	100271519		       95.36	      591.08	rs10048146-G	rs10048146	0	10048146	Intergenic	1	0.19	2E-7	6.698970004336019		    .09	[0.06-0.12] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	17q21.31	17	45727828	CRHR1	CRHR1			1394			rs9303521-T	rs9303521	0	9303521	intron	0	0.46	4E-6	5.397940008672037		    .06	[0.04-0.07] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	4q22.1	4	87854091	MEPE	MEPE - HSP90AB3P	56955	3327		        7.27	       37.66	rs1471403-T	rs1471403	0	1471403	Intergenic	1	0.34	8E-7	6.096910013008056		    .06	[0.04-0.08] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	11p11.2	11	46700671	ARHGAP1	ARHGAP1;ZNF408			392;79797			rs7932354-T	rs7932354	0	7932354	nearGene-5;nearGene-5	0	0.29	4E-9	8.397940008672036		    .07	[0.05-0.09] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	17q21.31	17	44115817	HDAC5	HDAC5			10014			rs228769-G	rs228769	0	228769	intron	0	0.20	2E-8	7.698970004336018		    .08	[0.05-0.11] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	1p36.12	1	22384980	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      118.68	       66.87	rs6426749-C	rs6426749	0	6426749	Intergenic	1	0.17	9E-8	7.045757490560674		    .08	[0.05-0.11] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	6q25.1	6	151688503	ESR1	ESR1			2099			rs2941740-G	rs2941740	0	2941740	nearGene-5	0	0.43	2E-10	9.698970004336017		    .07	[0.05-0.09] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	8q24.12	8	119000461	TNFRSF11B	COLEC10			10584			rs11995824-G	rs11995824	0	11995824	intron	0	0.55	7E-9	8.154901959985743		    .07	[0.05-0.09] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	1p31.3	1	68169392	GPR177	WLS;GNG12-AS1			79971;100289178			rs1430742-C	rs1430742	0	1430742	intron;intron	0	0.21	3E-13	12.52287874528034		    .11	[0.07-0.14] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	7p14.1	7	38096675	STARD3NL	EPDR1 - STARD3NL	54749	83930		      144.73	       81.53	rs1524058-T	rs1524058	0	1524058	Intergenic	1	0.40	1E-9	8.999999999999998		    .07	[0.05-0.09] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	7q21.3	7	96488606	FLJ42280	C7orf76			401388			rs4729260-G	rs4729260	0	4729260	intron	0	0.32	2E-10	9.698970004336017		    .08	[0.05-0.11] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	11p13	11	31189224	DCDC5	DCDC5 - DCDC1	100506627	341019		      196.54	       73.40	rs16921914-A	rs16921914	0	16921914	Intergenic	1	0.27	2E-9	8.698970004336019		    .08	[0.05-0.11] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	16q24.1	16	86677054	FOXL1	FOXL1 - RPL39P30	2300	100271519		       95.36	      591.08	rs10048146-G	rs10048146	0	10048146	Intergenic	1	0.19	2E-8	7.698970004336018		    .09	[0.06-0.12] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	17q21.31	17	45727828	CRHR1	CRHR1			1394			rs9303521-T	rs9303521	0	9303521	intron	0	0.46	1E-8	8		    .07	[0.05-0.09] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	2p16.2	2	54457420	SPTBN1	SPTBN1			6711			rs11898505-A	rs11898505	0	11898505	intron	0	0.34	2E-8	7.698970004336018		    .07	[0.05-0.09] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	4q22.1	4	87854091	MEPE	MEPE - HSP90AB3P	56955	3327		        7.27	       37.66	rs1471403-T	rs1471403	0	1471403	Intergenic	1	0.34	2E-8	7.698970004336018		    .07	[0.05-0.09] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	17q21.31	17	44115817	HDAC5	HDAC5			10014			rs228769-G	rs228769	0	228769	intron	0	0.20	4E-6	5.397940008672037		    .07	[0.04-0.10] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	1p36.12	1	22371954	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-G	rs7524102	0	7524102	Intergenic	1	0.17	3E-10	9.522878745280336		    .09	[0.06-0.12] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	6q25.1	6	151769572	ESR1	ESR1			2099			rs2504063-A	rs2504063	0	2504063	intron	0	0.40	6E-11	10.22184874961635		    .08	[0.06-0.10] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	8q24.12	8	118995181	TNFRSF11B	COLEC10			10584			rs2062377-T	rs2062377	0	2062377	intron	0	0.44	4E-16	15.39794000867204		    .09	[0.07-0.11] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	11q13.2	11	68424878	LRP5	LRP5			4041			rs599083-G	rs599083	0	599083	intron	0	0.31	5E-8	7.30102999566398		    .07	[0.05-0.09] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	12q13.13	12	53334171	SP7	SP7			121340			rs2016266-G	rs2016266	0	2016266	intron	0	0.32	1E-8	8		    .07	[0.05-0.09] s.d. increase	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	13q14.11	13	42377313	AKAP11	FABP3P2 - TNFSF11	56677	8600		        7.56	      185.42	rs9533090-T	rs9533090	0	9533090	Intergenic	1	0.50	5E-25	24.30102999566398		    .12	[0.10-0.14] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
10/16/2009	19801982	Rivadeneira F	10/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19801982?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	18q21.33	18	62387624	TNFRSF11A	TNFRSF11A			8792			rs884205-A	rs884205	0	884205	UTR-3	0	0.27	9E-9	8.045757490560675		    .08	[0.05-0.11] s.d. decrease	Affymetrix & Illumina [2,543,686](imputed)	N
11/04/2009	19798445	Hicks AA	10/02/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19798445?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	4p12	4	47561431	ATP10D	ATP10D			57205			rs10938494-A	rs10938494	0	10938494	intron	0	0.23	8E-19	18.09691001300805	(GluCer)	    .06	[0.04-0.07] unit increase	Illumina [318,237]	N
11/04/2009	19798445	Hicks AA	10/02/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19798445?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	11q12.2	11	61887833	FADS3	FADS3			3995			rs1000778-A	rs1000778	0	1000778	intron	0	0.32	7E-13	12.15490195998574	(SM 16:1)	    .62	[0.45-0.78] unit decrease	Illumina [318,237]	N
11/04/2009	19798445	Hicks AA	10/02/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19798445?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	19p13.2	19	8206837	LASS4	FBN3 - CERS4	84467	79603		       59.34	        2.49	rs7258249-G	rs7258249	0	7258249	Intergenic	1	0.48	2E-27	26.69897000433602	(SM 18:1Mol%)	    .00	[0.0007-0.001] mol % increase	Illumina [318,237]	N
11/04/2009	19798445	Hicks AA	10/02/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19798445?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	20p12.1	20	12988752	SPTLC3	PA2G4P2 - SPTLC3	170533	55304		      607.23	       20.23	rs680379-A	rs680379	0	680379	Intergenic	1	0.34	8E-15	14.09691001300805	(Cer24:0)	    .10	[0.08-0.13] mol % increase	Illumina [318,237]	N
11/04/2009	19798445	Hicks AA	10/02/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19798445?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	14q23.2	14	63768838	SGPP1	EIF2S2P1 - HMGN2P14	319115	100874458		       32.62	       24.13	rs7157785-A	rs7157785	0	7157785	Intergenic	1	0.19	9E-66	65.04575749056067	(SM 14:0Mol%)	    .00	[0.001-0.002] mol % increase	Illumina [318,237]	N
10/06/2009	19786962	Roeske D	09/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19786962?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	First genome-wide association scan on neurophysiological endophenotypes points to trans-regulation effects on SLC2A3 in dyslexic children.	Speech perception in dyslexia	200 European ancestry cases	186 European ancestry cases	4q32.1	4	156077389	CTSO, TDO2, PDGFC	FTH1P21 - PDGFC	2510	56034		       70.21	      684.22	rs4234898-T	rs4234898	0	4234898	Intergenic	1	NR	5E-8	7.30102999566398	(MMNb)	NR	NR	Illumina [297,086]	N
10/06/2009	19786962	Roeske D	09/29/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19786962?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	First genome-wide association scan on neurophysiological endophenotypes points to trans-regulation effects on SLC2A3 in dyslexic children.	Speech perception in dyslexia	200 European ancestry cases	186 European ancestry cases	10q26.3	10	130193981	NR	GLRX3 - MIR378C	10539	100422867		       13.60	      768.61	rs4751178-G	rs4751178	0	4751178	Intergenic	1	NR	7E-6	5.154901959985742	(MMNb)	NR	NR	Illumina [297,086]	N
10/06/2009	19779542	Nakanishi H	09/25/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19779542?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association analysis identified a novel susceptible locus for pathological myopia at 11q24.1.	Myopia (pathological)	297 Japanese ancestry cases, 934 Japanese ancestry controls	533 Japanese ancestry cases, 977 Japanese ancestry controls	11q24.1	11	122159482	BLID, LOC399959	MIR100HG			399959			rs577948-G	rs577948	0	577948	intron	0	0.52	2E-7	6.698970004336019		   1.37	[1.21-1.54] 	Illumina [411,777]	N
10/05/2009	19772629	Latourelle JC	09/22/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19772629?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	15q12	15	27752101	OCA2	GABRG3 - OCA2	2567	4948		      218.87	        2.77	rs17565841-A	rs17565841	0	17565841	Intergenic	1	NR	3E-6	5.522878745280337		   2.84	[NR] years younger	Illumina and Perlegen [1,861,750] (imputed)	N
10/05/2009	19772629	Latourelle JC	09/22/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19772629?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	18q12.1	18	31458160	DSG3	DSG3			1830			rs1941184-C	rs1941184	0	1941184	intron	0	NR	4E-6	5.397940008672037		   2.28	[NR] years younger	Illumina and Perlegen [1,861,750] (imputed)	N
10/05/2009	19772629	Latourelle JC	09/22/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19772629?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	1q23.3	1	161945711	ATF6	ATF6			22926			rs10918270-A	rs10918270	0	10918270	intron	0	NR	8E-6	5.096910013008055		   2.26	[NR] years younger	Illumina and Perlegen [1,861,750] (imputed)	N
10/05/2009	19772629	Latourelle JC	09/22/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19772629?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	11p13	11	32874118	QSER1, PRRG4	PRRG4 - QSER1	79056	79832		       16.00	       19.13	rs10767971-T	rs10767971	0	10767971	Intergenic	1	NR	5E-7	6.30102999566398		   3.24	[NR] years older	Illumina and Perlegen [1,861,750] (imputed)	N
10/05/2009	19772629	Latourelle JC	09/22/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19772629?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	2p13.3	2	69496578	AAK1	AAK1			22848			rs7577851-T	rs7577851	0	7577851	intron	0	NR	9E-6	5.045757490560675		   6.85	[NR] years younger	Illumina and Perlegen [1,861,750] (imputed)	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	2p21	2	43326810	THADA	THADA			63892			rs1465618-?	rs1465618	0	1465618	intron	0	0.23	2E-8	7.698970004336018		   1.08	[1.03-1.12] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	2q31.1	2	172446825	ITGA6	ITGA6			3655			rs12621278-?	rs12621278	0	12621278	intron	0	0.94	9E-23	22.04575749056067		   1.33	[1.25-1.43] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	4q22.3	4	94641726	PDLIM5	PDLIM5			10611			rs17021918-?	rs17021918	0	17021918	intron	0	0.65	4E-15	14.39794000867204		   1.11	[1.08-1.15] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	4q24	4	105140377	TET2	LOC101929491			101929491			rs7679673-?	rs7679673	0	7679673	intron	0	0.55	3E-14	13.52287874528034		   1.10	[1.06-1.14] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	7p15.3	7	20954872	NR	RPS26P30 - ASS1P11	100271111	340274		      110.91	      265.11	rs12155172-?	rs12155172	0	12155172	Intergenic	1	0.20	9E-6	5.045757490560675		   1.05	[1.00-1.10] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	8p21.2	8	23668950	NKX3.1	FAM60DP - NKX3-1	646721	4824		       33.44	        9.74	rs1512268-?	rs1512268	0	1512268	Intergenic	1	0.45	3E-30	29.52287874528033		   1.18	[1.14-1.22] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	11p15.5	11	2212344	IGF2, IGF2AS, INS, TH	MIR4686 - ASCL2	100616126	430		       39.21	       56.15	rs7127900-?	rs7127900	0	7127900	Intergenic	1	0.20	3E-33	32.52287874528034		   1.22	[1.17-1.27] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	22q13.2	22	43104206	NR	RPS25P10 - BIK	100271372	638		       11.62	        6.54	rs5759167-?	rs5759167	0	5759167	Intergenic	1	0.53	6E-29	28.22184874961635		   1.16	[1.14-1.20] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	4q22.3	4	94593458	PDLIM5	PDLIM5			10611			rs12500426-?	rs12500426	0	12500426	intron	0	0.46	1E-11	11		   1.08	[1.05-1.12] 	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	2p15	2	63074029	EHBP1	OTX1 - RPL27P5	5013	100270969		       16.20	       34.07	rs6545977-?	rs6545977	0	6545977	Intergenic	1	NR	5E-7	6.30102999566398		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	3p12.1	3	87124174	NR	LINC00506			100846978			rs17181170-?	rs17181170	0	17181170	intron	0	NR	3E-8	7.522878745280337		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	6q25.3	6	160160342	NR	SLC22A1 - SLC22A2	6580	6582		        1.23	       56.42	rs651164-?	rs651164	0	651164	Intergenic	1	NR	2E-9	8.698970004336019		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	7q21.3	7	98187015	NR	LMTK2			22853			rs6465657-?	rs6465657	0	6465657	intron	0	NR	2E-8	7.698970004336018		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	8q24.21	8	127506309	NR	CASC8 - CASC11	727677	100270680		       24.17	      224.02	rs4242384-?	rs4242384	0	4242384	Intergenic	1	NR	2E-24	23.69897000433602		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	10q11.23	10	46070851	NR	RPL23AP61 - AGAP7	728484	653268		        7.13	       38.64	rs3123078-?	rs3123078	0	3123078	Intergenic	1	NR	1E-19	19		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	11q13.3	11	69228491	NR	MIR3164 - MYEOV	100422846	26579		      145.23	       65.66	rs7130881-?	rs7130881	0	7130881	Intergenic	1	NR	8E-13	12.09691001300806		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	17q12	17	37741165	NR	HNF1B			6928			rs7501939-?	rs7501939	0	7501939	intron	0	NR	3E-18	17.52287874528034		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	17q24.3	17	71112612	NR	CASC17			101928165			rs1859962-?	rs1859962	0	1859962	intron	0	NR	2E-16	15.69897000433602		NR	NR	Illumina [541,129]	N
12/29/2009	19767753	Eeles RA	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767753	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	Xp11.22	23	51467205	NR	CXorf67 - NUDT11	340602	55190		       58.37	       22.81	rs1327301-?	rs1327301	0	1327301	Intergenic	1	NR	2E-10	9.698970004336017		NR	NR	Illumina [541,129]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	3q21.3	3	128319530	Intergenic	EEFSEC			60678			rs10934853-A	rs10934853	0	10934853	intron	0	0.28	3E-10	9.522878745280336		   1.12	[1.08-1.16] 	Illumina [310,520]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	8	127310936	Intergenic	LOC101930033			101930033			rs445114-T	rs445114	0	445114	intron	0	0.64	5E-10	9.301029995663981		   1.14	[1.10-1.19] 	Illumina [310,520]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	19q13.2	19	38244973	Intergenic	DPF1 - PPP1R14A	8193	94274		       15.30	        6.26	rs8102476-C	rs8102476	0	8102476	Intergenic	1	0.54	2E-11	10.69897000433602		   1.12	[1.08-1.15] 	Illumina [310,520]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	11q13.3	11	69211113	Intergenic	MIR3164 - MYEOV	100422846	26579		      127.86	       83.04	rs11228565-A	rs11228565	0	11228565	Intergenic	1	0.20	7E-12	11.15490195998574		   1.23	[1.16-1.31] 	Illumina [310,520]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	8	127112671	Intergenic	SRRM1P1 - CCAT1	401475	100507056		       24.14	       94.71	rs16901979-A	rs16901979	0	16901979	Intergenic	1	0.04	3E-14	13.52287874528034		   1.80	[1.55-2.09] 	Illumina [310,520]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	17q12	17	37738049	Intergenic	HNF1B			6928			rs4430796-A	rs4430796	0	4430796	intron	0	0.52	8E-6	5.096910013008055		   1.19	[1.10-1.28] 	Illumina [310,520]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	8	127308101	Intergenic	LOC101930033			101930033			rs16902094-G	rs16902094	0	16902094	intron	0	0.15	6E-15	14.22184874961635		   1.21	[1.15-1.26] 	Illumina [310,520]	N
10/05/2009	19767754	Gudmundsson J	09/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19767754?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	8q24.21	8	127472793	Intergenic	CASC8			727677			rs1447295-A	rs1447295	0	1447295	intron	0	0.11	2E-19	18.69897000433602		   1.58	[1.43-1.74] 	Illumina [310,520]	N
09/30/2009	19754311	Le Clerc S	09/15/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19754311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	1p13.3	1	107035210	Intergenic	NDE1P1 - PRMT6	100422372	55170		      216.87	       21.44	rs4118325-G	rs4118325	0	4118325	Intergenic	1	0.81	6E-7	6.221848749616355		   4.17	[2.17-8.33] 	Illumina [291,119]	N
09/30/2009	19754311	Le Clerc S	09/15/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19754311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	12p12.1	12	24241438	SOX5	SOX5;LOC101928471			6660;101928471			rs1522232-C	rs1522232	0	1522232	intron;intron	0	0.52	2E-6	5.698970004336018		   2.22	[1.59-3.13] 	Illumina [291,119]	N
09/30/2009	19754311	Le Clerc S	09/15/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19754311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	1q23.3	1	165439858	RXRG	RXRG			6258			rs10800098-A	rs10800098	0	10800098	intron	0	0.05	4E-6	5.397940008672037		   3.29	[2.08-5.20] 	Illumina [291,119]	N
09/30/2009	19754311	Le Clerc S	09/15/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19754311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	2q12.1	2	105281283	TGFBRAP1	TGFBRAP1			9392			rs1020064-G	rs1020064	0	1020064	intron	0	0.77	7E-6	5.154901959985742		   2.94	[1.75-5.00] 	Illumina [291,119]	N
09/30/2009	19754311	Le Clerc S	09/15/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19754311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	9p23	9	13007130	Intergenic	TDPX2 - MPDZ	7002	8777		       33.62	       98.57	rs1360517-A	rs1360517	0	1360517	Intergenic	1	0.06	3E-6	5.522878745280337		   3.09	[2.00-4.78] 	Illumina [291,119]	N
09/30/2009	19754311	Le Clerc S	09/15/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19754311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	8q22.3	8	100829318	Intergenic	RPS20P23 - RPS26P6	100271089	392256		       52.45	       66.42	rs3108919-C	rs3108919	0	3108919	Intergenic	1	0.27	4E-6	5.397940008672037		   2.13	[1.56-2.91] 	Illumina [291,119]	N
09/30/2009	19754311	Le Clerc S	09/15/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19754311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	9p22.3	9	14446003	NR	TRNAH5 - CDCA4P1	100009607	100420502		       11.99	      147.58	rs1556032-C	rs1556032	0	1556032	Intergenic	1	0.49	9E-6	5.045757490560675		   2.05	[1.48-2.84] 	Illumina [291,119]	N
09/30/2009	19749758	Suppiah V	09/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19749758?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	IL28B is associated with response to chronic hepatitis C interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	131 European ancestry responders, 162 European ancestry non-responders	261 European ancestry responders, 294 European ancestry non-responders	19q13.2	19	39252525	IL28A, IL28B	IFNL4 - MSRB1P1	101180976	441849		        3.67	        2.39	rs8099917-G	rs8099917	0	8099917	Intergenic	1	NR	9E-9	8.045757490560675		   1.98	[1.57-2.52] 	Illumina [311,159]	N
09/30/2009	19749757	Tanaka Y	09/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19749757?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of IL28B with response to pegylated interferon-alpha and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	64 Japanese ancestry responders, 78 Japanese ancestry non-responders	122 Japanese ancestry responders, 50 Japanese ancestry non-responders	19q13.2	19	39252525	IL28B	IFNL4 - MSRB1P1	101180976	441849		        3.67	        2.39	rs8099917-G	rs8099917	0	8099917	Intergenic	1	0.12	3E-32	31.52287874528033		  27.10	[14.6-50.3] 	Affymetrix [621,220]	N
09/30/2009	20061627	Heinzen EL	09/11/2009	J Alzheimers Dis	http://www.ncbi.nlm.nih.gov/pubmed/20061627	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	19q13.32	19	44892362	TOMM40, APOE	TOMM40			10452			rs2075650-?	rs2075650	0	2075650	intron	0	0.15	3E-11	10.52287874528034		NR	NR	Illumina [~550,000]	N
09/30/2009	20061627	Heinzen EL	09/11/2009	J Alzheimers Dis	http://www.ncbi.nlm.nih.gov/pubmed/20061627	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	13q13.2	13	34080781	RFC3	RNU5A-4P - VDAC1P12	100873870	100874289		      251.13	        2.00	rs690705-?	rs690705	0	690705	Intergenic	1	0.25	6E-7	6.221848749616355		NR	NR	Illumina [~550,000]	N
09/30/2009	20061627	Heinzen EL	09/11/2009	J Alzheimers Dis	http://www.ncbi.nlm.nih.gov/pubmed/20061627	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	1p31.1	1	83789052	TTLL7	LOC101927587			101927587			rs7539409-?	rs7539409	0	7539409	intron	0	0.18	1E-6	5.999999999999999		NR	NR	Illumina [~550,000]	N
09/30/2009	20061627	Heinzen EL	09/11/2009	J Alzheimers Dis	http://www.ncbi.nlm.nih.gov/pubmed/20061627	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	10q24.31	10	100741814	PAX2	HIF1AN - PAX2	55662	5076		      187.89	        3.90	rs4509693-?	rs4509693	0	4509693	Intergenic	1	0.18	6E-6	5.221848749616356		NR	NR	Illumina [~550,000]	N
09/30/2009	20061627	Heinzen EL	09/11/2009	J Alzheimers Dis	http://www.ncbi.nlm.nih.gov/pubmed/20061627	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	6q24.3	6	148102235	SASH1	SAMD5 - SASH1	389432	23328		      532.21	      109.88	rs9390537-?	rs9390537	0	9390537	Intergenic	1	0.22	8E-6	5.096910013008055		NR	NR	Illumina [~550,000]	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	1p36.22	1	11898666	MTHFR	NPPB - RNU5E-1	4879	26829		       39.73	        9.49	rs12085006-?	rs12085006	0	12085006	Intergenic	1	0.43	6E-10	9.221848749616356	(Plasma homocysteine)	    .04	[0.020-0.060] unit increase	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	9q22.33	9	98361054	GPR51	GABBR2			9568			rs10986018-?	rs10986018	0	10986018	intron	0	0.22	2E-8	7.698970004336018	(plasma homocysteine)	    .06	[0.040-0.080] unit decrease	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	19q13.33	19	48703728	FUT2	FUT2			2524			rs602662-?	rs602662	0	602662	missense	0	0.44	2E-15	14.69897000433602	(Plasma Vitamin B12)	    .07	[0.050-0.090] unit decrease	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	10p13	10	17114152	CUBN	CUBN			8029			rs1801222-?	rs1801222	0	1801222	missense	0	0.28	3E-9	8.522878745280337	(Plasma Vitamin B12)	    .05	[0.030-0.070] unit decrease	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	11q12.1	11	59866020	TCN1	TCN1			6947			rs526934-?	rs526934	0	526934	intron	0	0.27	2E-10	9.698970004336017	(Plasma Vitamin B12)	    .05	[0.030-0.070] unit decrease	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	6p12.3	6	49441774	MUT	MUT			4594			rs9473555-?	rs9473555	0	9473555	intron	0	0.35	5E-8	7.30102999566398	(Plasma Vitamin B12)	    .04	[0.020-0.060] unit decrease	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	1p36.12	1	21563893	ALPL	ALPL			249			rs1256335-?	rs1256335	0	1256335	intron	0	0.21	1E-15	15	(Plasma PLP)	    .14	[0.10-0.18] unit decrease	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	1p36.12	1	21459575	NBPF3	NBPF3			84224			rs4654748-?	rs4654748	0	4654748	intron	0	0.48	4E-11	10.39794000867204	(Plasma PLP)	    .10	[0.080-0.120] unit decrease	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/05/2013	19744961	Hazra A	09/10/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19744961	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	2q24.3	2	163634019	FIGN	FIGN			55137			rs982393-?	rs982393	0	982393	intron	0	NR	8E-8	7.096910013008055	(Plasma folate)	NR	NR	Affymetrix & Illumina [~2.5 Million] (imputed)	N
09/30/2009	19740415	Sha Q	09/09/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19740415?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association reveals three SNPs associated with sporadic amyotrophic lateral sclerosis through a two-locus analysis.	Amyotrophic lateral sclerosis (interaction)	276 European ancestry cases, 271 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [549,062]	N
09/29/2009	19734902	Harold D	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734902?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.	Alzheimer's disease	3,941 European ancestry cases, 7,848 European ancestry controls	2,023 European ancestry cases, 2,340 European ancestry controls	8p21.1	8	27607002	CLU	CLU			1191			rs11136000-?	rs11136000	0	11136000	intron	0	0.60	9E-10	9.045757490560675		   1.16	[1.11-1.22] 	Illumina [529,205]	N
09/29/2009	19734902	Harold D	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734902?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.	Alzheimer's disease	3,941 European ancestry cases, 7,848 European ancestry controls	2,023 European ancestry cases, 2,340 European ancestry controls	11q14.2	11	86157598	PICALM	PICALM - FNTAP1	8301	283226		       87.72	       37.53	rs3851179-?	rs3851179	0	3851179	Intergenic	1	0.63	1E-9	8.999999999999998		   1.16	[1.11-1.22] 	Illumina [529,205]	N
09/29/2009	19734902	Harold D	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734902?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.	Alzheimer's disease	3,941 European ancestry cases, 7,848 European ancestry controls	2,023 European ancestry cases, 2,340 European ancestry controls	19q13.32	19	44892362	APOE, TOMM40	TOMM40			10452			rs2075650-?	rs2075650	0	2075650	intron	0	0.15	2E-157	156.698970004336		   2.53	[2.37-2.71] 	Illumina [529,205]	N
09/29/2009	19734903	Lambert JC	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer's disease.	Alzheimer's disease	2,032 European ancestry cases, 5,328 European ancestry controls	3,978 European ancestry cases, 3,297 European ancestry controls	8p21.1[rs2279590]; 8p21.1[rs11136000]			CLU	 - 						3-SNP haplotype	rs2279590, rs11136000, rs9331888					0.26	6E-10		(CCG)	   1.22	[1.14-1.29] 	Illumina [537,029]	N
09/29/2009	19734903	Lambert JC	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer's disease.	Alzheimer's disease	2,032 European ancestry cases, 5,328 European ancestry controls	3,978 European ancestry cases, 3,297 European ancestry controls	1q32.2[rs6656401]; 1q32.2[rs3818361]			CR1	 - 						2-SNP haplotype	rs6656401, rs3818361					0.18	3E-10		(AA)	   1.22	[1.15-1.30] 	Illumina [537,029]	N
09/29/2009	19734903	Lambert JC	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer's disease.	Alzheimer's disease	2,032 European ancestry cases, 5,328 European ancestry controls	3,978 European ancestry cases, 3,297 European ancestry controls	19q13.32	19	44892362	APOE	TOMM40			10452			rs2075650-?	rs2075650	0	2075650	intron	0	0.90	2E-16	15.69897000433602		NR	NR	Illumina [537,029]	N
09/29/2009	19734900	Rung J	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734900?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes and other traits	679 French ancestry cases, 697 French ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	2q36.3	2	226229029	LOC64673, IRS1	NYAP2 - MIR5702	57624	100847053		      575.01	      429.68	rs2943641-C	rs2943641	0	2943641	Intergenic	1	0.63	9E-12	11.04575749056067		   1.19	[1.13-1.25] 	Illumina [392,365]	N
09/29/2009	19734900	Rung J	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734900?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes and other traits	679 French ancestry cases, 697 French ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	4p16.1	4	6268329	WFS1, PPP2R2C	WFS1			7466			rs4689388-T	rs4689388	0	4689388	nearGene-5	0	0.57	1E-8	8		   1.16	[1.10-1.21] 	Illumina [392,365]	N
09/29/2009	19734900	Rung J	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734900?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes and other traits	679 French ancestry cases, 697 French ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	5q14.3	5	90250292	LOC72901, CETN3	LOC101929495			101929495			rs12518099-C	rs12518099	0	12518099	intron	0	0.23	7E-7	6.154901959985743		   1.16	[1.10-1.22] 	Illumina [392,365]	N
09/29/2009	19734900	Rung J	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734900?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes and other traits	679 French ancestry cases, 697 French ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	6p22.3	6	20657333	CDKAL1	CDKAL1			54901			rs4712523-G	rs4712523	0	4712523	intron	0	0.32	2E-12	11.69897000433602		   1.20	[1.14-1.26] 	Illumina [392,365]	N
09/29/2009	19734900	Rung J	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734900?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes and other traits	679 French ancestry cases, 697 French ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.68	8E-8	7.096910013008055		   1.16	[1.10-1.22] 	Illumina [392,365]	N
09/29/2009	19734900	Rung J	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734900?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes and other traits	679 French ancestry cases, 697 French ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.27	1E-30	30		   1.48	[1.39-1.57] 	Illumina [392,365]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	19p13.11	19	17641880	UNC13A	UNC13A			23025			rs12608932-?	rs12608932	0	12608932	intron	0	0.34	3E-14	13.52287874528034		   1.25	[NR] 	Illumina [292,768]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	9p21.2	9	27536399	MOBKL2B, IFNK, C9orf72	LOC102724192			102724192			rs2814707-?	rs2814707	0	2814707	intron	0	0.23	7E-9	8.154901959985743		   1.22	[NR] 	Illumina [292,768]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	Xq13.3	23	76127599	NR	SAR1AP4 - PBDC1	100132322	51260		      242.46	       45.34	rs5937496-?	rs5937496	0	5937496	Intergenic	1	0.13	6E-7	6.221848749616355		   1.38	[NR] 	Illumina [292,768]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	12p12.3	12	17220805	NR	RPL7P40 - PSMC1P8	100271220	390297		       98.35	      162.31	rs9971637-?	rs9971637	0	9971637	Intergenic	1	0.05	2E-6	5.698970004336018		   1.48	[NR] 	Illumina [292,768]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	9p21.2	9	27561051	NR	C9orf72			203228			rs774359-?	rs774359	0	774359	intron	0	0.25	3E-6	5.522878745280337		   1.19	[NR] 	Illumina [292,768]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	11q22.1	11	97811564	NR	RNA5SP347 - CNTN5	100873609	53942		      153.98	     1209.41	rs2405657-?	rs2405657	0	2405657	Intergenic	1	0.66	3E-6	5.522878745280337		   1.19	[NR] 	Illumina [292,768]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	Xp22.32	23	4678097	NR	RPL24P9 - NLGN4X	100129487	57502		      724.49	     1211.93	rs5916687-?	rs5916687	0	5916687	Intergenic	1	0.27	3E-6	5.522878745280337		   1.22	[NR] 	Illumina [292,768]	N
09/29/2009	19734901	van Es MA	09/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734901?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	9p21.2	9	27543283	MOBKL2B, IFNK, C9orf72	IFNK - C9orf72	56832	203228		       16.79	        3.26	rs3849942-?	rs3849942	0	3849942	Intergenic	1	0.23	1E-8	8		   1.23	[NR] 	Illumina [292,768]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	2p16.3	2	51440601	AC007402.3	LOC730100			730100			rs1206397-?	rs1206397	0	1206397	intron	0	0.0476	3E-7	6.522878745280337	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q26.32	3	177879201	AC007953.21	LOC102724550			102724550			rs7612209-?	rs7612209	0	7612209	intron	0	0.4012	4E-6	5.397940008672037	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	16q23.3	16	82346348	AC009117.8	MPHOSPH6 - CDH13	10200	1012		      176.12	      280.45	rs4082514-?	rs4082514	0	4082514	Intergenic	1	0.02741	3E-6	5.522878745280337	(PC1)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12p12.3	12	19648661	AC090059.9	LOC101928387			101928387			rs6486986-?	rs6486986	0	6486986	intron	0	0.2253	8E-6	5.096910013008055	(SWM strategy)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	5p15.31	5	7227934	AC091951.3	RNA5SP176 - ADCY2	100873438	108		      180.60	      168.30	rs7729273-?	rs7729273	0	7729273	Intergenic	1	0.1985	1E-6	5.999999999999999	(SSP)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	16p12.1	16	27045134	AC092725.3	HSPE1P16 - C16orf82	171421	162083		      981.97	       21.76	rs2203512-?	rs2203512	0	2203512	Intergenic	1	0.1394	3E-7	6.522878745280337	(PRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	17q21.32	17	48643203	AC103702.3	LOC101060400			101060400			rs2326017-?	rs2326017	0	2326017	intron	0	0.2985	3E-7	6.522878745280337	(SWM strategy)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	Xq28	23	152487090	AC108171.5	KRT8P8 - GABRQ	402429	55879		        5.87	      151.09	rs10856240-?	rs10856240	0	10856240	Intergenic	1	0.2913	9E-6	5.045757490560675	(PC1)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q23	3	141260569	ACPL2	PXYLP1			92370			rs16851254-?	rs16851254	0	16851254	intron	0	0.0313	8E-6	5.096910013008055	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q31.2	13	88110091	AL354896.16	TET1P1 - RPL29P29	441662	100271474		      216.69	      126.47	rs969962-?	rs969962	0	969962	Intergenic	1	0.1398	9E-6	5.045757490560675	(PAL8)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q21.33	13	72194571	AL445923.10	RNA5SP32 - RPL18AP17	100873364	100873859		      216.37	      265.56	rs4083578-?	rs4083578	0	4083578	Intergenic	1	0.2874	8E-6	5.096910013008055	(SWM strategy)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11p12	11	43064544	API5	RPL9P23 - HNRNPKP3	100131020	399881		     1525.56	      196.96	rs10501293-?	rs10501293	0	10501293	Intergenic	1	0.2494	5E-6	5.301029995663981	(SWM strategy)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3p22.3	3	35940638	ARPP-21	RPL36AP17 - RFC3P1	100271326	100131711		       68.42	      229.12	rs6799705-?	rs6799705	0	6799705	Intergenic	1	0.04563	2E-7	6.698970004336019	(PAL8)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12q23.3	12	107310928	BTBD11	SETP7 - BTBD11	100873166	121551		       39.09	        7.49	rs1820460-?	rs1820460	0	1820460	Intergenic	1	0.2788	8E-6	5.096910013008055	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11q14.2	11	86344859	C11orf73	C11orf73			51501			rs6592284-?	rs6592284	0	6592284	intron	0	0.21	2E-6	5.698970004336018	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	18q22.1	18	67349863	C18orf4,DSEL	RPL31P9 - DSEL	619464	92126		      212.11	      156.72	rs2124349-?	rs2124349	0	2124349	Intergenic	1	0.04926	4E-6	5.397940008672037	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	6p21.2	6	37483920	C6orf129	CCDC167			154467			rs904251-?	rs904251	0	904251	intron	0	0.3806	7E-6	5.154901959985742	(SWM strategy)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11q13.5	11	77112438	CAPN5	CAPN5			726			rs3781684-?	rs3781684	0	3781684	intron	0	0.1135	7E-6	5.154901959985742	(VRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12q24.23	12	120017960	CCDC64	CCDC64			92558			rs11064994-?	rs11064994	0	11064994	intron	0	0.05521	6E-6	5.221848749616356	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	15q23	15	68600650	CORO2B	CORO2B			10391			rs11856323-?	rs11856323	0	11856323	intron	0	0.07883	1E-7	7	(PAL8)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	7p14.3	7	29001574	CPVL	CPVL;LOC100506497			54504;100506497			rs2252521-?	rs2252521	0	2252521	intron;intron	0	0.3363	5E-6	5.301029995663981	(PAL8)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q14.11	13	43153713	DNAJC15	DNAJC15 - MOCS3P2	29103	100420520		       44.54	       25.79	rs1324015-?	rs1324015	0	1324015	Intergenic	1	0.4193	9E-6	5.045757490560675	(PC1)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q27.2	3	185228061	EHHADH	EHHADH			1962			rs7374394-?	rs7374394	0	7374394	intron	0	0.2035	2E-6	5.698970004336018	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1p36.13	1	16066862	FAM131C	FAM131C			348487			rs9442235-?	rs9442235	0	9442235	intron	0	0.4154	6E-6	5.221848749616356	(PC1)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1q41	1	222750009	FAM177B	FAM177B			400823			rs6683071-?	rs6683071	0	6683071	missense	0	0.2016	4E-6	5.397940008672037	(PC1)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	8q24.13	8	123819594	FAM91A1	FAM91A1 - FER1L6	157769	654463		        4.14	       32.39	rs10481151-?	rs10481151	0	10481151	Intergenic	1	0.1414	4E-7	6.397940008672037	(PRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	4q28.1	4	125505540	FAT4	MIR2054			100302267			rs12639834-?	rs12639834	0	12639834	nearGene-5	0	0.358	6E-6	5.221848749616356	(SWM strategy)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q13.33	3	121625293	FBXO40	FBXO40			51725			rs3772130-?	rs3772130	0	3772130	intron	0	0.2284	6E-6	5.221848749616356	(PC1)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q12.3	13	28355574	FLT1	FLT1			2321			rs17086609-?	rs17086609	0	17086609	intron	0	0.3475	5E-6	5.301029995663981	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	15q12	15	26727939	GABRB3	GABRB3			2562			rs8043440-?	rs8043440	0	8043440	intron	0	0.1695	2E-6	5.698970004336018	(SRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	2q31.1	2	170965956	GORASP2	GORASP2			26003			rs4668356-?	rs4668356	0	4668356	cds-synon	0	0.06041	1E-6	5.999999999999999	(PAL8)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12p13.1	12	13634912	GRIN2B	GRIN2B			2904			rs2160519-?	rs2160519	0	2160519	intron	0	0.05946	2E-6	5.698970004336018	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3p25.1	3	14489213	GRIP2	SLC6A6;GRIP2			6533;80852			rs9036-?	rs9036	0	9036	ncRNA;UTR-3	0	0.187	3E-6	5.522878745280337	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	Xp22.2	23	11030572	HCCS	MID1			4281			rs5934953-?	rs5934953	0	5934953	intron	0	0.02285	1E-7	7	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	7q31.1	7	110827165	IMMP2L	IMMP2L			83943			rs10279573-?	rs10279573	0	10279573	intron	0	0.1446	3E-6	5.522878745280337	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	9p22.2	9	17899608	NR	PABPC1P11 - PUS7P1	100421058	100421790		      308.91	      253.96	rs4284125-?	rs4284125	1	1977882	Intergenic	1	0.1267	8E-6	5.096910013008055	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	21q21.3	21	25630065	JAM2	MRPL39 - JAM2	54148	58494		       22.58	        9.22	rs17001239-?	rs17001239	0	17001239	Intergenic	1	0.1166	2E-6	5.698970004336018	(PRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1p32.1	1	58859954	JUN	LINC01135			100131060			rs4601609-?	rs4601609	0	4601609	intron	0	0.04517	5E-6	5.301029995663981	(PRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q21.33	13	69881529	KLHL1	KLHL1			57626			rs7984606-?	rs7984606	0	7984606	intron	0	0.01081	8E-6	5.096910013008055	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11p13	11	33847061	LMO2	FBXO3 - LMO2	26273	4005		       72.54	       11.52	rs11032423-?	rs11032423	0	11032423	Intergenic	1	0.04637	8E-6	5.096910013008055	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1q32.1	1	204602943	MDM4	MDM4			4194			rs12143943-?	rs12143943	0	12143943	ncRNA	0	0.413	5E-6	5.301029995663981	(PAL8)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3p22.1	3	39512297	MOBP	MOBP			4336			rs816488-?	rs816488	0	816488	intron	0	0.04479	4E-6	5.397940008672037	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	14q23.3	14	64432337	MTHFD1	MTHFD1			4522			rs10498514-?	rs10498514	0	10498514	intron	0	0.01817	8E-7	6.096910013008056	(SWM strategy)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12q24.31	12	124549387	NCOR2	NCOR2			9612			rs12423712-?	rs12423712	0	12423712	intron	0	0.05907	7E-6	5.154901959985742	(RVP)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	21q11.2	21	14967968	NRIP1	NRIP1			8204			rs2229741-?	rs2229741	0	2229741	cds-synon	0	0.4726	6E-7	6.221848749616355	(SRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	20p12.3	20	8856124	PLCB1	PLCB1			23236			rs6056209-?	rs6056209	0	6056209	intron	0	0.4347	2E-6	5.698970004336018	(RVP)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	18q12.3	18	42708328	RIT2	RNA5SP454 - RIT2	100873699	6014		      437.61	       34.89	rs8085804-?	rs8085804	0	8085804	Intergenic	1	0.3695	8E-6	5.096910013008055	(VRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q34	13	110817691	RP11-120J20.1	RPL21P107 - LINC00346	644627	283487		       54.52	       46.30	rs767210-?	rs767210	0	767210	Intergenic	1	0.1089	3E-7	6.522878745280337	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	17q25.2	17	77215126	SEC14L1	SEC14L1			6397			rs3744064-?	rs3744064	0	3744064	intron	0	0.03053	7E-7	6.154901959985743	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	9p22.2	9	17895107	SH3GL2	PABPC1P11 - PUS7P1	100421058	100421790		      304.41	      258.46	rs10810865-?	rs10810865	0	10810865	Intergenic	1	0.127	4E-6	5.397940008672037	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	9p22.1	9	19664083	SLC24A2	SLC24A2			25769			rs4258076-?	rs4258076	0	4258076	intron	0	0.2668	4E-6	5.397940008672037	(VRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	8q12.1	8	58795750	TOX	RPS26P7 - TOX	619443	9760		      206.96	        9.67	rs960089-?	rs960089	0	960089	Intergenic	1	0.06545	6E-6	5.221848749616356	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	19q12	19	31310224	TSHZ3	TSHZ3			57616			rs1078373-?	rs1078373	0	1078373	intron	0	0.3707	6E-6	5.221848749616356	(SSP)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	4p13	4	41282694	UCHL1	UCHL1 - LIMCH1	7345	22998		       14.27	       76.91	rs4861096-?	rs4861096	0	4861096	Intergenic	1	0.244	9E-6	5.045757490560675	(PAL6)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	15q21.3	15	54049268	UNC13C	UNC13C			440279			rs1897031-?	rs1897031	0	1897031	intron	0	0.1753	1E-6	5.999999999999999	(PRM)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1q23.2	1	160452126	VANGL2	VANGL2 - SLAMF6	57216	114836		       23.45	       32.90	rs16832015-?	rs16832015	0	16832015	Intergenic	1	0.01081	2E-6	5.698970004336018	(IED)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	Xp22.31	23	8426212	VCX3B	VCX2 - VCX3B	51480	425054		      254.95	       38.62	rs7892812-?	rs7892812	0	7892812	Intergenic	1	0.4747	8E-6	5.096910013008055	(SSP)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	7p14.1	7	38795435	VPS41	VPS41			27072			rs11984145-?	rs11984145	0	11984145	intron	0	0.0471	6E-6	5.221848749616356	(PAL8)	NR	NR	Illumina [475,971]	N
11/08/2012	19734545	Need AC	09/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19734545?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	6p21.2	6	37519268	AL353597.20	FLJ45825			100505530			rs1757171-?	rs1757171	0	1757171	intron	0	0.3884	7E-6	5.154901959985742	(SWM strategy)	NR	NR	Illumina [475,971]	N
09/28/2009	19729612	Paterson AD	09/03/2009	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/19729612?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association identifies the ABO blood group as a major locus associated with serum levels of soluble E-selectin.	Soluble E-selectin levels	685 European ancestry individuals with type 1 diabetes	477 European ancestry individuals	9q34.2	9	133278724	ABO	ABO - SURF6	28	6838		        3.51	       51.98	rs579459-C	rs579459	0	579459	Intergenic	1	0.20	1E-29	28.99999999999999		NR	NR	Illumina [~841,000]	N
09/28/2009	19729412	Tonjes A	09/03/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19729412	Genetic variation in GPR133 is associated with height: genome wide association study in the self-contained population of Sorbs.	Height	929 Sorbian individuals	5,758 European ancestry individuals	12q24.33	12	131091646	GPR133	GPR133			283383			rs1569019-?	rs1569019	0	1569019	intron	0	NR	5E-8	7.30102999566398		    .95	[0.61-1.29] cm increase	Affymetrix [390,619]	N
09/28/2009	19727025	De Moor MH	09/02/2009	Med Sci Sports Exerc	http://www.ncbi.nlm.nih.gov/pubmed/19727025?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of exercise behavior in Dutch and American adults.	Exercise (leisure time)	2,622 European ancestry individuals	NA	10q23.2	10	87683553	PAPSS2	PAPSS2			9060			rs10887741-T	rs10887741	0	10887741	intron	0	NR	4E-6	5.397940008672037		   1.32	[1.17-1.49] 	Affymetrix and Perlegen [~1.6 million] (imputed)	N
09/28/2009	19727025	De Moor MH	09/02/2009	Med Sci Sports Exerc	http://www.ncbi.nlm.nih.gov/pubmed/19727025?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of exercise behavior in Dutch and American adults.	Exercise (leisure time)	2,622 European ancestry individuals	NA	2q33.1	2	200293399	DNAPTP6	C2orf47 - SPATS2L	79568	26010		      329.27	       12.48	rs12612420-A	rs12612420	0	12612420	Intergenic	1	NR	8E-6	5.096910013008055		   1.43	[1.22-1.67] 	Affymetrix and Perlegen [~1.6 million] (imputed)	N
09/28/2009	19727025	De Moor MH	09/02/2009	Med Sci Sports Exerc	http://www.ncbi.nlm.nih.gov/pubmed/19727025?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of exercise behavior in Dutch and American adults.	Exercise (leisure time)	2,622 European ancestry individuals	NA	18p11.32	18	1595020	C18orf2	LINC00470 - METTL4	56651	64863		      235.39	      942.51	rs8097348-G	rs8097348	0	8097348	Intergenic	1	NR	7E-6	5.154901959985742		   1.36	[1.19-1.56] 	Affymetrix and Perlegen [~1.6 million] (imputed)	N
09/29/2009	19736353	Ising M	09/01/2009	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19736353?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genomewide association study points to multiple loci that predict antidepressant drug treatment outcome in depression.	Response to antidepressant treatment	700 European ancestry cases	832 European ancestry cases, 366 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [389,251] (pooled)	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	4p15.1	4	34892233	Intergenic	RPL31P31 - SEC63P2	727792	100420287		      923.67	      595.58	rs17390445-?	rs17390445	0	17390445	Intergenic	1	NR	1E-7	7	(ziprasidone)	  17.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	9q33.3	9	126166744	Intergenic	PBX3 - MVB12B	5090	89853		      199.37	      160.10	rs888219-?	rs888219	0	888219	Intergenic	1	NR	2E-7	6.698970004336019	(risperidone)	  11.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	12q23.1	12	99423064	ANKS1B	ANKS1B			56899			rs7968606-?	rs7968606	0	7968606	intron	0	NR	3E-7	6.522878745280337	(olanzapine)	  10.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	2q14.3	2	124524333	CNTNAP5	CNTNAP5			129684			rs17727261-?	rs17727261	0	17727261	missense	0	NR	5E-7	6.30102999566398	(risperidone)	  10.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	1q21.3	1	152565478	Intergenic	LCE3E			353145			rs10888501-?	rs10888501	0	10888501	nearGene-3	0	NR	1E-6	5.999999999999999	(olanzapine)	   9.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p24.1	6	12196980	Intergenic	HIVEP1			3096			rs1040994-?	rs1040994	0	1040994	intron	0	NR	2E-6	5.698970004336018	(olanzapine)	   9.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	6p21.33	6	30768374	Intergenic	TRNAI25			100189401			rs12526186-?	rs12526186	0	12526186		0	NR	3E-6	5.522878745280337	(risperidone)	   9.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	15q13.3	15	31042159	TRPM1	TRPM1			4308			rs17815774-?	rs17815774	0	17815774	missense	0	NR	3E-6	5.522878745280337	(risperidone)	   9.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/28/2009	19721433	McClay JL	09/01/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19721433?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	3q28	3	191949988	Intergenic	PYDC2 - FGF12	152138	2257		      488.53	      189.26	rs7635839-?	rs7635839	0	7635839	Intergenic	1	NR	3E-6	5.522878745280337	(olanzapine)	   9.00	[NR] % of variance explained	Affymetrix & Perlegen [492,900]	N
09/10/2009	19723657	Spain SL	09/01/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19723657?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Colorectal cancer risk is not associated with increased levels of homozygosity in a population from the United Kingdom.	Colorectal cancer	921 European ancestry cases, 929 European ancestry controls	1,214 European ancestry cases, 1,435 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [486,303]	N
09/09/2009	19724244	Laje G	08/31/2009	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/19724244?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of suicidal ideation emerging during citalopram treatment of depressed outpatients.	Response to antidepressant treatment	90 Hispanic and European ancestry cases, 90 Hispanic and European ancestry controls	30 Hispanic and European ancestry cases, 1,652 Hispanic and European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [100,864]	N
09/09/2009	19714205	Hancock DB	08/28/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19714205?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study implicates chromosome 9q21.31 as a susceptibility locus for asthma in mexican children.	Asthma (childhood onset)	492 Mexican ancestry trios	177 Mexican ancestry trios	9q21.31	9	79424447	TLE4, CHCHD9	CHCHD2P9 - TLE4	645345	7091		       32.41	      147.33	rs2378383-?	rs2378383	0	2378383	Intergenic	1	0.78	7E-7	6.154901959985743		   1.64	[1.32-2.04] 	Illumina [520,767]	N
09/24/2009	19714249	Liu YZ	08/28/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19714249?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Powerful bivariate genome-wide association analyses suggest the SOX6 gene influencing both obesity and osteoporosis phenotypes in males.	Obesity and osteoporosis	499 European ancestry males, 501 European ancestry females	1,370 European ancestry males and 1,985 European ancestry females from 975 families	11p15.1	11	16368048	SOX6	SOX6			55553			rs297325-C	rs297325	0	297325	intron	0	0.23	4E-7	6.397940008672037	(BMI-BMD, males)	NR	NR	Affymetrix [379,319]	N
09/24/2009	19714249	Liu YZ	08/28/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19714249?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Powerful bivariate genome-wide association analyses suggest the SOX6 gene influencing both obesity and osteoporosis phenotypes in males.	Obesity and osteoporosis	499 European ancestry males, 501 European ancestry females	1,370 European ancestry males and 1,985 European ancestry females from 975 families	11p15.1	11	16381965	SOX6	SOX6			55553			rs4756846-C	rs4756846	0	4756846	intron	0	0.12	5E-7	6.30102999566398	(BMI-BMD, males)	NR	NR	Affymetrix [379,319]	N
09/09/2009	19706858	Shuldiner AR	08/26/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19706858	Association of cytochrome P450 2C19 genotype with the antiplatelet effect and clinical efficacy of clopidogrel therapy.	Response to clopidogrel therapy	429 Amish individuals	140 European ancestry individuals, 83 African American individuals, 4 Other ancestry individuals	10q23.33	10	94645745	CYP2C18, CYP2C19, CYP2C9, CYP2C8	HELLS - CTBP2P2	3070	100130970		       42.87	         .62	rs12777823-?	rs12777823	0	12777823	Intergenic	1	0.17	2E-13	12.69897000433602	(Amish)	NR	NR	Affymetrix [400,230]	N
09/09/2009	19698717	Cui R	08/18/2009	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/19698717	Functional variants in ADH1B and ALDH2 coupled with alcohol and smoking synergistically enhance esophageal cancer risk.	Esophageal cancer	182 Japanese ancestry cases, 927 Japanese ancestry controls	782 Japanese ancestry cases, 1,898 Japanese ancestry controls	12q24.12	12	111803962	BRAP, ALDH2	ALDH2			217			rs671-A	rs671	0	671	missense	0	NR	3E-24	23.52287874528033		   1.67	[1.58-1.76] 	Illumina [359,195]	N
09/09/2009	19698717	Cui R	08/18/2009	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/19698717	Functional variants in ADH1B and ALDH2 coupled with alcohol and smoking synergistically enhance esophageal cancer risk.	Esophageal cancer	182 Japanese ancestry cases, 927 Japanese ancestry controls	782 Japanese ancestry cases, 1,898 Japanese ancestry controls	4q23	4	99318162	ADH6, ADH1B	ADH1B			125			rs1229984-G	rs1229984	0	1229984	missense	0	NR	8E-24	23.09691001300805		   1.79	[1.69-1.88] 	Illumina [359,195]	N
09/09/2009	19684573	Ge D	08/16/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19684573	Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance.	Response to hepatitis C treatment	871 European ancestry cases, 191 African American cases, and 75 Hispanic ancestry cases	NA	19q13.2	19	39248147	IL28B	IFNL4			101180976			rs12979860-C	rs12979860	0	12979860	intron	0	0.72	1E-28	28	(combined)	   2.00	[1.8-2.3] (European-Americans)	Illumina [565,759]	N
09/09/2009	19684573	Ge D	08/16/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19684573	Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance.	Response to hepatitis C treatment	871 European ancestry cases, 191 African American cases, and 75 Hispanic ancestry cases	NA	6q21	6	109686444	AKD2	AK9			221264			rs9400317-?	rs9400317	0	9400317	intron	0	NR	7E-6	5.154901959985742	(combined)	NR	NR	Illumina [565,759]	N
09/09/2009	19684573	Ge D	08/16/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19684573	Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance.	Response to hepatitis C treatment	871 European ancestry cases, 191 African American cases, and 75 Hispanic ancestry cases	NA	4q34.3	4	179127208	Intergenic	RNA5SP173 - LINC00290	100873437	728081		      720.38	     1936.88	rs17067123-?	rs17067123	0	17067123	Intergenic	1	NR	8E-6	5.096910013008055	(combined)	NR	NR	Illumina [565,759]	N
09/04/2009	19684604	Papaemmanuil E	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684604	Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	907 European ancestry cases, 2,398 European ancestry controls	NA	7p12.2	7	50402906	IKZF1	IKZF1			10320			rs4132601-C	rs4132601	0	4132601	UTR-3	0	0.28	1E-19	19		   1.69	[1.58-1.81] 	Illumina [291,473]	N
09/04/2009	19684604	Papaemmanuil E	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684604	Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	907 European ancestry cases, 2,398 European ancestry controls	NA	10q21.2	10	61992400	ARID5B	ARID5B			84159			rs7089424-C	rs7089424	0	7089424	intron	0	0.34	7E-19	18.15490195998574		   1.65	[1.54-1.76] 	Illumina [291,473]	N
09/04/2009	19684604	Papaemmanuil E	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684604	Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	907 European ancestry cases, 2,398 European ancestry controls	NA	14q11.2	14	23119848	CEBPE	CEBPE			1053			rs2239633-G	rs2239633	0	2239633	nearGene-5	0	0.52	3E-7	6.522878745280337		   1.34	[1.22-1.45] 	Illumina [291,473]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	10q21.2	10	61963818	ARID5B	ARID5B			84159			rs10821936-C	rs10821936	0	10821936	intron	0	0.34	1E-15	15		   1.91	[1.60-2.20] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	7p12.2	7	50398606	IKZF1, DDC	IKZF1			10320			rs11978267-G	rs11978267	0	11978267	intron	0	0.27	8E-11	10.09691001300805		   1.69	[1.40-1.90] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	12q24.22	12	116564853	KRTHB5	MAP1LC3B2			643246			rs2089222-A	rs2089222	0	2089222	intron	0	0.03	8E-8	7.096910013008055		   2.26	[1.60-3.0] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	6q24.1	6	140848688	Intergenic	LOC102723724			102723724			rs11155133-G	rs11155133	0	11155133	intron	0	0.01	3E-7	6.522878745280337		   3.62	[2.10-6.00] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	19q13.31	19	44007237	ZNF230	ZNF230			7773			rs2191566-G	rs2191566	0	2191566	intron	0	0.28	4E-7	6.397940008672037		   1.52	[1.20-1.70] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	1q43	1	237103303	RYR2	RYR2			6262			rs7554607-A	rs7554607	0	7554607	intron	0	0.56	2E-6	5.698970004336018		   1.49	[1.20-1.70] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	2q36.1	2	223053265	KCNE4	KCNE4			23704			rs12621643-T	rs12621643	0	12621643	missense	0	0.28	3E-6	5.522878745280337		   1.48	[1.20-1.70] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	1p31.1	1	76306643	SIAT7C	ST6GALNAC3			256435			rs10873876-T	rs10873876	0	10873876	intron	0	0.15	4E-6	5.397940008672037		   1.55	[1.20-1.80] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	3q26.32	3	178712151	KCNMB2	KCNMB2			10242			rs9290663-T	rs9290663	0	9290663	intron	0	0.13	6E-6	5.221848749616356		   1.58	[1.20-1.90] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	1q31.3	1	196875463	Intergenic	CFHR1 - CFHR4	3078	10877		       43.27	       12.55	rs6428370-G	rs6428370	0	6428370	Intergenic	1	0.32	7E-6	5.154901959985742		   1.43	[1.20-1.60] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	1q44	1	247526230	OR2C3	GCSAML;GCSAML-AS1			148823;148824			rs1881797-C	rs1881797	0	1881797	intron;intron	0	0.18	7E-6	5.154901959985742		   1.52	[1.20-1.80] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	12p13.32	12	4315956	C12orf5	CCND2 - C12orf5	894	57103		       10.60	        5.24	rs10849033-G	rs10849033	0	10849033	Intergenic	1	0.02	9E-6	5.045757490560675		   2.55	[1.60-3.80] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	18p11.32	18	2498055	Intergenic	LINC00470 - METTL4	56651	64863		     1138.43	       39.47	rs1879352-C	rs1879352	0	1879352	Intergenic	1	0.16	9E-6	5.045757490560675		   1.53	[1.20-1.80] 	Affymetrix [307,944]	N
09/11/2009	19684603	Trevino LR	08/16/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19684603?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European descent cases, 17,958 European descent controls	NA	10p11.21	10	34529060	PARD3	PARD3			56288			rs563507-A	rs563507	0	563507	intron	0	0.04	9E-6	5.045757490560675		   2.00	[1.40-2.70] 	Affymetrix [307,944]	N
09/04/2009	19680635	Alkelai A	08/13/2009	Psychopharmacology (Berl)	http://www.ncbi.nlm.nih.gov/pubmed/19680635?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of antipsychotic-induced parkinsonism severity among schizophrenia patients.	Response to antipsychotic treatment	140 European ancestry cases, 57 African American cases, 2 Other ancestry cases, 117 European ancestry controls, 72 African American controls, 9 Other ancestry controls	NA	2q24.3	2	163461366	FIGN	RPL7P61 - FIGN	101929589	55137		      308.06	      143.57	rs12476047-C	rs12476047	0	12476047	Intergenic	1	NR	3E-6	5.522878745280337		   3.21	[1.97-5.25] 	Affymetrix & Perlegen [495,172]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	1q21.3	1	153507522	S100A5	S100A7 - S100A6	6278	6277		       43.44	       27.08	rs4845552-?	rs4845552	0	4845552	Intergenic	1	NR	6E-6	5.221848749616356		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	5p15.1	5	17148802	NR	LOC285696			285696			rs682748-?	rs682748	0	682748	intron	0	NR	8E-6	5.096910013008055		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	5p14.1	5	25760570	Intergenic	CDH10 - MSNP1	1008	4479		     1115.59	      148.74	rs7727656-?	rs7727656	0	7727656	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	5q14.1	5	78335030	SCAMP1, LHFPL2	ATP6V1G1P6 - SCAMP1	100462732	9522		      112.41	       25.49	rs6881634-?	rs6881634	0	6881634	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	5q14.1	5	78964065	ARSB	ARSB			411			rs337847-?	rs337847	0	337847	intron	0	NR	7E-6	5.154901959985742		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	5q21.3	5	107646859	EFNA5	EFNA5			1946			rs10074258-?	rs10074258	0	10074258	intron	0	NR	2E-7	6.698970004336019		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	7p21.3	7	9499649	Intergenic	RPL9P19 - GAPDHP68	100129634	100132601		      560.20	      115.26	rs9918508-?	rs9918508	0	9918508	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	7p12.2	7	50273756	IKZF1	C7orf72 - IKZF1	100130988	10320		      114.50	       31.03	rs10276619-?	rs10276619	0	10276619	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	7q21.11	7	78546660	MAGI2	MAGI2			9863			rs11525066-?	rs11525066	0	11525066	intron	0	NR	3E-6	5.522878745280337		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	8q24.12	8	119212566	MAL2	MAL2			114569			rs1364705-?	rs1364705	0	1364705	intron	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	9q21.2	9	76793228	PRUNE2	PRUNE2			158471			rs10781380-?	rs10781380	0	10781380	intron	0	NR	7E-7	6.154901959985743		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	9q21.31	9	81400122	RP11-232A1.1	RPS19P6 - RPS20P25	100271078	100271235		      617.35	       10.16	rs10867752-?	rs10867752	0	10867752	Intergenic	1	NR	3E-6	5.522878745280337		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	11q24.3	11	128336515	Intergenic	KIRREL3-AS3 - ETS1	283165	2113		     1330.46	      122.25	rs6590322-?	rs6590322	0	6590322	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	12q13.11	12	46092055	ARID2, SFRS2IP	RPL13AP21 - SLC38A1	100129799	81539		       87.37	       91.00	rs1373549-?	rs1373549	0	1373549	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	12q14.3	12	67235051	CAND1	OSBPL9P4 - GGTA2P	100498661	121328		      665.51	       30.79	rs1082714-?	rs1082714	0	1082714	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	13q31.1	13	86590602	Intergenic	DDX6P2 - TXNL1P1	100130117	100419095		      313.28	      134.94	rs4773460-?	rs4773460	0	4773460	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	14q22.1	14	51766558	FRMD6	LOC101927598			101927598			rs11626056-?	rs11626056	0	11626056	ncRNA	0	NR	1E-6	5.999999999999999		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	20q11.23	20	37137934	C20orf132	MROH8			140699			rs8115854-?	rs8115854	0	8115854	missense	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	20q11.23	20	37181380	RPN2	RPN2;MROH8			6185;140699			rs6031882-?	rs6031882	0	6031882	intron;nearGene-5	0	NR	6E-6	5.221848749616356		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	20q13.31	20	57615578	ZBP1	ZBP1			81030			rs2073145-?	rs2073145	0	2073145	missense	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [516,645]	N
09/09/2009	19668339	Potkin SG	08/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19668339?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 7 African American cases, 1 Asian ancestry cases, 2 Other ancestry cases, 192 European ancestry controls, 14 African American controls, 3 Asian ancestry controls	NA	21q21.1	21	20405418	FDPSP	FDPSP6 - KRT18P2	54051	54044		       16.48	       19.48	rs1888414-?	rs1888414	0	1888414	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	Illumina [516,645]	N
09/04/2009	19664746	Tse KP	08/05/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19664746	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	6	29950322	HLA-A	TRNAI25			100189401			rs2517713-A	rs2517713	0	2517713		0	0.62	4E-20	19.39794000867203		   1.88	[1.65-2.15] 	Illumina [480,365]	N
09/04/2009	19664746	Tse KP	08/05/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19664746	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	6	29643654	GABBR1	TRNAI25			100189401			rs29232-A	rs29232	0	29232		0	0.46	9E-17	16.04575749056067		   1.67	[1.48-1.88] 	Illumina [480,365]	N
09/04/2009	19664746	Tse KP	08/05/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19664746	Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.	Nasopharyngeal carcinoma	277 Han Chinese ancestry cases, 285 Han Chinese ancestry controls	635 Han Chinese ancestry cases, 1,640 Han Chinese ancestry controls	6p22.1	6	29702484	HLA-F	TRNAI25			100189401			rs3129055-G	rs3129055	0	3129055		0	0.31	7E-11	10.15490195998574		   1.51	[1.34-1.71] 	Illumina [480,365]	N
09/14/2009	19654303	Broderick P	08/04/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19654303	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	15q25.1	15	78513681	CHRNA3	HYKK			123688			rs8034191-?	rs8034191	0	8034191	intron	0	NR	3E-26	25.52287874528034		   1.29	[1.23-1.35] 	Illumina [511,919]	N
09/14/2009	19654303	Broderick P	08/04/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19654303	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	5p15.33	5	1315545	CLPTM1L	MIR4457 - CLPTM1L	100616235	81037		        6.17	        2.21	rs4975616-?	rs4975616	0	4975616	Intergenic	1	NR	3E-9	8.522878745280337		   1.15	[1.10-1.20] 	Illumina [511,919]	N
09/14/2009	19654303	Broderick P	08/04/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19654303	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	6p21.33	6	31652743	BAT3	BAG6;APOM			7917;55937			rs3117582-?	rs3117582	0	3117582	intron;intron	0	NR	4E-10	9.397940008672037		   1.24	[1.16-1.33] 	Illumina [511,919]	N
09/14/2009	19654303	Broderick P	08/04/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19654303	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	15q15.2	15	43267033	TGM5	TGM5			9333			rs748404-?	rs748404	0	748404	nearGene-5	0	NR	1E-6	5.999999999999999		   1.15	[1.09-1.20] 	Illumina [511,919]	N
09/14/2009	19654303	Broderick P	08/04/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19654303	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	10q23.31	10	88967577	NR	ACTA2			59			rs1926203-?	rs1926203	0	1926203	intron	0	NR	1E-6	5.999999999999999		   1.12	[NR] 	Illumina [511,919]	N
09/14/2009	19654303	Broderick P	08/04/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19654303	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	3p24.1	3	29533972	NR	RBMS3			27303			rs1530057-?	rs1530057	0	1530057	intron	0	NR	3E-6	5.522878745280337		   1.26	[NR] 	Illumina [511,919]	N
09/14/2009	19654303	Broderick P	08/04/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19654303	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	2p13.3	2	68971256	NR	GKN2 - GKN1	200504	56287		       18.29	        3.32	rs4254535-?	rs4254535	0	4254535	Intergenic	1	NR	5E-6	5.301029995663981		   1.12	[NR] 	Illumina [511,919]	N
09/04/2009	19651812	Chambers JC	08/03/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19651812	Common genetic variation near melatonin receptor MTNR1B contributes to raised plasma glucose and increased risk of type 2 diabetes among Indian Asians and European Caucasians.	Fasting plasma glucose	698 Asian Indian ancestry cases, 6,776 Asian Indian ancestry controls	4,462 European ancestry controls	11q14.3	11	92958366	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      459.41	       11.26	rs2166706-G	rs2166706	0	2166706	Intergenic	1	0.46	2E-9	8.698970004336019		    .07	 (0.04-0.09) mmol/L increase	Illumina [up to 544,390]	N
09/04/2009	19656524	Grant SF	08/03/2009	J Pediatr	http://www.ncbi.nlm.nih.gov/pubmed/19656524	A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24.	Orofacial clefts	111 European ancestry cases, 5,951 European ancestry controls	NA	8q24.21	8	128933908	Intergenic	LINC01263 - LINC00977	101927774	728724		      505.99	      282.56	rs987525-?	rs987525	0	987525	Intergenic	1	0.22	9E-8	7.045757490560674		   2.09	[1.59-2.76] 	Illumina [495,858]	N
09/04/2009	19656524	Grant SF	08/03/2009	J Pediatr	http://www.ncbi.nlm.nih.gov/pubmed/19656524	A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24.	Orofacial clefts	111 European ancestry cases, 5,951 European ancestry controls	NA	18q22.3	18	71771837	Intergenic	GTSCR1 - CBLN2	220158	147381		     1120.98	      764.84	rs17085106-?	rs17085106	0	17085106	Intergenic	1	0.018	4E-8	7.397940008672037		   4.07	[2.37-7.00] 	Illumina [495,858]	N
09/04/2009	19648918	Amundadottir L	08/02/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19648918?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer.	Pancreatic cancer	1,771 European ancestry cases, 1,805 European ancestry controls	2,120 European ancestry cases, 2,127 European ancestry controls	9q34.2	9	133273813	ABO	ABO			28			rs505922-C	rs505922	0	505922	intron	0	0.35	5E-8	7.30102999566398		   1.20	[1.12-1.28] 	Illumina [558,542]	N
09/04/2009	19648919	Song H	08/02/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19648919?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2.	Ovarian cancer	1,817 European ancestry cases, 2,353 European ancestry controls	6,944 European ancestry cases, 9,477 European ancestry controls	9p22.2	9	16915023	BNC2, LOC648570, CNTLN	LSM1P1 - RPL31P42	100820732	100271197		      139.28	      193.28	rs3814113-T	rs3814113	0	3814113	Intergenic	1	0.68	5E-19	18.30102999566398		   1.22	[1.16-1.27] 	Illumina [up to ~2,000,000] (imputed)	N
08/21/2009	19648920	Wu X	08/02/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19648920	Genetic variation in the prostate stem cell antigen gene PSCA confers susceptibility to urinary bladder cancer.	Bladder cancer	969 European ancestry cases, 957 European ancestry controls	5,698 European ancestry cases, 38,633 European ancestry controls	8q24.3	8	142680513	PSCA	PSCA			8000			rs2294008-T	rs2294008	0	2294008	intron	0	0.46	2E-10	9.698970004336017		   1.15	[1.10-1.20] 	Illumina [556,429]	N
12/29/2009	20031604	Cheng YC	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031604?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA	11q22.2	11	102824377	MMP	WTAPP1			100288077			rs495366-A	rs495366	0	495366	intron	0	0.36	6E-34	33.22184874961636		    .44	[NR] unit decrease in ln(MMP-1)	Affymetrix [338,079]	N
12/29/2009	20031604	Cheng YC	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031604?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA	20p11.23	20	19590937	SLC24A3	SLC24A3			57419			rs3790268-?	rs3790268	0	3790268	intron	0	NR	3E-7	6.522878745280337		NR	NR	Affymetrix [338,079]	N
12/29/2009	20031604	Cheng YC	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031604?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA	11q22.2	11	102820751	MMP-1	WTAPP1			100288077			rs11225434-C	rs11225434	0	11225434	intron	0	0.38	9E-29	28.04575749056067		    .39	[NR] unit increase in ln(MMP-1)	Affymetrix [338,079]	N
12/29/2009	20031604	Cheng YC	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031604?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA	11q22.3	11	104463511	MMP-1, MMP-3	RNA5SP348 - CASP12	100873610	100506742		      210.90	      423.18	rs11226373-G	rs11226373	0	11226373	Intergenic	1	0.15	2E-18	17.69897000433602		    .44	[NR] unit increase in ln(MMP-1)	Affymetrix [338,079]	N
09/04/2009	19667218	Comabella M	08/01/2009	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/19667218?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan of 500,000 single-nucleotide polymorphisms among responders and nonresponders to interferon beta therapy in multiple sclerosis.	Response to interferon beta therapy	53 responders, 53 non-responders	49 responders, 45 non-responders	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [428,867](pooled)	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	1q23.3	1	162044842	NOS1AP	OLFML2B - NOS1AP	25903	9722		       20.46	       24.95	rs2880058-G	rs2880058	0	2880058	Intergenic	1	0.32	2E-10	9.698970004336017		    .19	[0.13-0.25] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	13q14.2	13	47588423	Intergenic	GNG5P5 - NAP1L4P3	100101935	730174		      280.88	      175.14	rs2478333-A	rs2478333	0	2478333	Intergenic	1	0.33	4E-8	7.397940008672037		    .17	[0.11-0.23] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	14q32.13	14	95656071	TCL6	TCL6			27004			rs8015016-G	rs8015016	0	8015016	intron	0	0.20	5E-7	6.30102999566398		    .18	[0.10-0.26] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	4q31.23	4	148053451	ARHGAP10	ARHGAP10			79658			rs6845865-G	rs6845865	0	6845865	intron	0	0.21	7E-7	6.154901959985743		    .19	[0.11-0.27] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	3q29	3	194606369	LOC100132805	TMEM44			93109			rs789852-A	rs789852	0	789852	intron	0	0.08	7E-7	6.154901959985743		    .25	[0.15-0.35] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	3p14.2	3	61808380	PTPRG	PTPRG			5793			rs652889-A	rs652889	0	652889	intron	0	0.36	8E-7	6.096910013008056		    .15	[0.09-0.21] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	4q26	4	117411099	Intergenic	TRAM1L1 - RPSAP35	133022	100270916		      325.52	        2.36	rs4318720-A	rs4318720	0	4318720	Intergenic	1	0.09	8E-7	6.096910013008056		    .28	[0.16-0.40] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	5p15.32	5	5897581	Intergenic	KIAA0947 - HMGB3P3	23379	100419949		      407.35	      392.23	rs7728043-G	rs7728043	0	7728043	Intergenic	1	0.48	1E-6	5.999999999999999		    .14	[0.08-0.20] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	3q21.1	3	122649500	Intergenic	PARP15 - EIF4BP8	165631	339881		       10.45	       11.11	rs2650951-A	rs2650951	0	2650951	Intergenic	1	0.05	1E-6	5.999999999999999		    .29	[0.17-0.41] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	12p12.2	12	20378822	PDE3A	PDE3A			5139			rs1348582-G	rs1348582	0	1348582	intron	0	0.18	1E-6	5.999999999999999		    .20	[0.12-0.28] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	2q31.2	2	178777248	TTN	TTN;LOC101927055			7273;101927055			rs12476289-A	rs12476289	0	12476289	missense;ncRNA	0	0.07	2E-6	5.698970004336018		    .29	[0.17-0.41] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	7p14.2	7	37037249	ELMO1	ELMO1			9844			rs10488031-A	rs10488031	0	10488031	intron	0	0.07	2E-6	5.698970004336018		    .26	[0.16-0.36] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	4p15.1	4	35409009	Intergenic	RPL31P31 - SEC63P2	727792	100420287		     1440.44	       78.80	rs1533317-A	rs1533317	0	1533317	Intergenic	1	0.46	2E-6	5.698970004336018		    .14	[0.08-0.20] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	2q24.1	2	156696348	Intergenic	GPD2 - RPLP0P7	2820	100271047		      109.95	       81.34	rs7601713-A	rs7601713	0	7601713	Intergenic	1	0.23	2E-6	5.698970004336018		    .16	[0.10-0.22] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	12q24.33	12	131137217	GPR133	GPR133			283383			rs885389-A	rs885389	0	885389	intron	0	0.30	4E-8	7.397940008672037		    .17	[0.11-0.23] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	9q21.31	9	80192588	Intergenic	NPAP1P6 - NPAP1P4	100533675	100533674		      325.71	      164.52	rs12554086-A	rs12554086	0	12554086	Intergenic	1	0.39	4E-7	6.397940008672037		    .16	[0.10-0.22] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	4q28.3	4	130216606	Intergenic	CYCSP14 - PGBD4P4	360170	100421146		      193.72	      278.07	rs1024020-A	rs1024020	0	1024020	Intergenic	1	0.21	4E-7	6.397940008672037		    .18	[0.10-0.26] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	6p21.32	6	33118472	Intergenic	TRNAI25			100189401			rs3117035-A	rs3117035	0	3117035		0	0.48	1E-6	5.999999999999999		    .14	[0.08-0.20] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	10p13	10	13713544	FRMD4A	FRMD4A			55691			rs1541010-A	rs1541010	0	1541010	intron	0	0.28	1E-6	5.999999999999999		    .15	[0.09-0.21] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	5q12.3	5	66443611	Intergenic	SREK1 - MAST4	140890	375449		      260.00	      152.74	rs10514995-G	rs10514995	0	10514995	Intergenic	1	0.36	1E-6	5.999999999999999		    .15	[0.09-0.21] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	18q23	18	77275676	Intergenic	GALR1 - BDP1P	2587	724038		        5.53	      156.38	rs2717128-G	rs2717128	0	2717128	Intergenic	1	0.14	1E-6	5.999999999999999		    .19	[0.11-0.27] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	13q12.11	13	22135531	Intergenic	MTND3P1 - LINC00540	100873208	100506622		       22.19	       74.75	rs7318731-A	rs7318731	0	7318731	Intergenic	1	0.48	1E-6	5.999999999999999		    .14	[0.08-0.20] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	15q25.1	15	78981704	RASGRF1	RASGRF1			5923			rs3743200-A	rs3743200	0	3743200	intron	0	0.27	2E-6	5.698970004336018		    .16	[0.10-0.22] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	2p22.2	2	37523837	Intergenic	QPCT - CDC42EP3	25797	10602		      150.52	      118.05	rs4352210-A	rs4352210	0	4352210	Intergenic	1	0.37	2E-6	5.698970004336018		    .14	[0.08-0.20] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	11p12	11	41831114	Intergenic	RPL9P23 - HNRNPKP3	100131020	399881		      292.13	     1430.39	rs1484948-G	rs1484948	0	1484948	Intergenic	1	0.32	2E-6	5.698970004336018		    .16	[0.10-0.22] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	3q12.1	3	99448263	Intergenic	ACTG1P13 - COL8A1	100418920	1295		      232.23	      190.33	rs2670321-C	rs2670321	0	2670321	Intergenic	1	0.27	2E-6	5.698970004336018		    .16	[0.10-0.22] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	9p21.3	9	25449124	Intergenic	IZUMO3 - TUSC1	100129669	286319		      903.23	      227.27	rs12552736-G	rs12552736	0	12552736	Intergenic	1	0.06	2E-6	5.698970004336018		    .25	[0.15-0.35] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	1q44	1	243779782	AKT3	AKT3			10000			rs4132509-A	rs4132509	0	4132509	intron	0	0.21	2E-6	5.698970004336018		    .18	[0.10-0.26] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	1q32.3	1	213682245	Intergenic	RPL31P13 - PROX1-AS1	100270983	100505832		      253.18	      139.64	rs17706439-A	rs17706439	0	17706439	Intergenic	1	0.17	3E-6	5.522878745280337		    .18	[0.10-0.26] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	2p13.3	2	68836777	Intergenic	ARHGAP25 - BMP10	9938	27302		        9.94	       28.70	rs10496166-A	rs10496166	0	10496166	Intergenic	1	0.13	4E-6	5.397940008672037		    .18	[0.10-0.26] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	8q12.1	8	59217737	Intergenic	TOX - RNA5SP267	9760	100873520		       98.53	      238.15	rs3110127-A	rs3110127	0	3110127	Intergenic	1	0.33	4E-6	5.397940008672037		    .15	[0.09-0.21] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	2p11.2	2	84019462	Intergenic	RPL37P10 - ST6GALNAC2P1	100271015	100422716		      424.22	       20.45	rs1447537-A	rs1447537	0	1447537	Intergenic	1	0.31	4E-6	5.397940008672037		    .15	[0.09-0.21] unit decrease	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	9p21.3	9	25452814	Intergenic	IZUMO3 - TUSC1	100129669	286319		      906.92	      223.58	rs13300284-A	rs13300284	0	13300284	Intergenic	1	0.04	4E-6	5.397940008672037		    .26	[0.14-0.38] unit increase	Illumina [~318,327]	N
12/29/2009	20031603	Marroni F	08/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031603	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	22q12.1	22	26646142	Intergenic	ISCA2P1 - MIAT	100287193	440823		         .81	       11.34	rs744016-A	rs744016	0	744016	Intergenic	1	0.20	5E-6	5.301029995663981		    .17	[0.09-0.25] unit decrease	Illumina [~318,327]	N
08/21/2009	19625618	Nakano M	07/22/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19625618	Three susceptible loci associated with primary open-angle glaucoma identified by genome-wide association study in a Japanese population.	Glaucoma (primary open-angle)	418 Japanese ancestry cases, 300 Japanese ancestry controls	409 Japanese ancestry cases, 448 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [331,838]	N
08/21/2009	19620980	Skibola CF	07/20/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19620980?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma.	Follicular lymphoma	189 European ancestry cases, 592 European controls	456 European ancestry cases, 2,785 European ancestry controls	6p21.33	6	31106253	STG, PSORS1	TRNAI25			100189401			rs6457327-C	rs6457327	0	6457327		0	0.62	5E-11	10.30102999566398		   1.69	[1.43-2.00] 	Illumina [~500,000] (pooled)	N
08/12/2009	19609347	Adeyemo A	07/17/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19609347?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of hypertension and blood pressure in African Americans.	Hypertension	509 African American cases, 508 African American controls	366 West African ancestry cases, 614 West African ancestry controls	4q23	4	99401288	ADH7	LOC102723576			102723576			rs991316-T	rs991316	0	991316	intron	0	0.45	5E-6	5.301029995663981		   1.62	[NR] 	Affymetrix [808,465]	N
08/12/2009	19609347	Adeyemo A	07/17/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19609347?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of hypertension and blood pressure in African Americans.	Hypertension	509 African American cases, 508 African American controls	366 West African ancestry cases, 614 West African ancestry controls	15q21.3	15	57921216	ALDH1A2	POLR2M - ALDH1A2	81488	8854		      203.66	       32.21	rs1550576-?	rs1550576	0	1550576	Intergenic	1	0.86	3E-6	5.522878745280337		   1.92	[NR] 	Affymetrix [808,465]	N
08/04/2009	19597492	Benjamin EJ	07/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19597492?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.	Atrial fibrillation	3,413 cases, 37,105 referents	2,145 cases, 4,073 controls	4q25	4	110787131	PITX2	PITX2 - MIR297	5308	100126354		      145.01	       73.45	rs17042171-A	rs17042171	0	17042171	Intergenic	1	0.12	4E-63	62.39794000867203		   1.65	 	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/04/2009	19597492	Benjamin EJ	07/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19597492?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.	Atrial fibrillation	3,413 cases, 37,105 referents	2,145 cases, 4,073 controls	16q22.3	16	73017721	ZFHX3	ZFHX3			463			rs2106261-T	rs2106261	0	2106261	intron	0	0.174	2E-15	14.69897000433602		   1.25	 	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/04/2009	19597492	Benjamin EJ	07/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19597492?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.	Atrial fibrillation	3,413 cases, 37,105 referents	2,145 cases, 4,073 controls	1p36.22	1	11792459	MTHFR, NPPA	MTHFR			4524			rs17375901-T	rs17375901	0	17375901	intron	0	0.053	6E-7	6.221848749616355		   1.26	 	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/30/2009	19597491	Gudbjartsson DF	07/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19597491	A sequence variant in ZFHX3 on 16q22 associates with atrial fibrillation and ischemic stroke.	Atrial fibrillation	2,385 European ancestry cases, 33,752 European ancestry controls	up to 2,427 European ancestry cases, 3,379 European ancestry controls, 286 Han Chinese ancestry cases, 2,763 Han Chinese ancestry controls	16q22.3	16	72995261	ZFHX3	ZFHX3			463			rs7193343-T	rs7193343	0	7193343	intron	0	NR	1E-10	10		   1.21	[1.14-1.29] 	Illumina [303,136]	N
07/30/2009	19597491	Gudbjartsson DF	07/13/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19597491	A sequence variant in ZFHX3 on 16q22 associates with atrial fibrillation and ischemic stroke.	Atrial fibrillation	2,385 European ancestry cases, 33,752 European ancestry controls	up to 2,427 European ancestry cases, 3,379 European ancestry controls, 286 Han Chinese ancestry cases, 2,763 Han Chinese ancestry controls	4q25	4	110789013	Intergenic	PITX2 - MIR297	5308	100126354		      146.89	       71.57	rs2200733-?	rs2200733	0	2200733	Intergenic	1	0.12	1E-14	14		   1.42	[NR] 	Illumina [303,136]	N
07/24/2009	19587794	Nolte IM	07/09/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19587794	Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide association studies.	QT interval	3,558 European ancestry individuals	29,527 European ancestry individuals	1q23.3	1	162064100	OLFML2B, NOS1AP	OLFML2B - NOS1AP	25903	9722		       39.72	        5.69	rs12143842-T	rs12143842	0	12143842	Intergenic	1	0.25	1E-83	83		    .18	[NR] unit increase	Affymetrix & Illumina [~2,399,142] (imputed)	N
07/24/2009	19587794	Nolte IM	07/09/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19587794	Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide association studies.	QT interval	3,558 European ancestry individuals	29,527 European ancestry individuals	6q22.31	6	118346359	SLC35F1, C6orf204, PLN	RPL29P4 - CEP85L	387101	387119		      346.78	      114.41	rs11153730-C	rs11153730	0	11153730	Intergenic	1	0.50	2E-29	28.69897000433602		    .09	[NR] unit increase	Affymetrix & Illumina [~2,399,142] (imputed)	N
07/24/2009	19584900	Tonjes A	07/08/2009	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19584900?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of FTO variants with BMI and fat mass in the self-contained population of Sorbs in Germany.	Body mass index and fat mass	948 Sorbian individuals	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [390,619]	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	17p13.3	17	2240166	SMG6, SRR, TSR1, SGSM2	SMG6			23293			rs10852932-T	rs10852932	0	10852932	intron	0	0.36	2E-11	10.69897000433602		    .03	[0.02-0.04] cm increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	1p21.2	1	99584229	PALMD	LPPR4 - PALMD	9890	54873		      274.65	       61.65	rs7543130-A	rs7543130	0	7543130	Intergenic	1	0.49	1E-7	7		    .03	[0.02-0.04] cm increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	5q23.2	5	123195653	CCDC100, PPIC	PRDM6 - SUMO1P5	93166	474341		        1.39	       40.32	rs17470137-A	rs17470137	0	17470137	Intergenic	1	0.29	1E-11	11		    .03	[0.02-0.04] cm increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	12q14.3	12	66000884	HMGA2	HMGA2 - MIR6074	8091	102464827		       34.59	       22.74	rs4026608-C	rs4026608	0	4026608	Intergenic	1	0.38	2E-9	8.698970004336019		    .03	[0.02-0.04] cm decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	12p12.2	12	20077705	PDE3A	LOC100506393			100506393			rs10770612-G	rs10770612	0	10770612	intron	0	0.19	2E-8	7.698970004336018		    .03	[0.02-0.04] cm increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	15q24.1	15	73936724	LOXL1	LOXL1			4016			rs893817-G	rs893817	0	893817	intron	0	0.34	3E-6	5.522878745280337		    .02	[0.01-0.03] cm increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	6q22.31	6	118256880	SLC35F1, C6orf204, PLN	SLC35F1			222553			rs89107-G	rs89107	0	89107	intron	0	0.50	1E-9	8.999999999999998	(LV internal diastolic dimensions)	    .03	[0.02-0.04] cm decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	10q23.1	10	86087202	GRID1	GRID1			2894			rs7910620-G	rs7910620	0	7910620	intron	0	0.01	7E-7	6.154901959985743	(LV wall thickness)	    .17	[0.11-0.23] cm increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	16q23.1	16	78224913	WWOX	WWOX			51741			rs2059238-A	rs2059238	0	2059238	intron	0	0.22	3E-6	5.522878745280337	(LV wall thickness)	    .02	[0.01-0.03] cm decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
08/07/2009	19584346	Vasan RS	07/08/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19584346?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	5q22.1	5	110672513	SLC25A46	TMEM232			642987			rs17132261-T	rs17132261	0	17132261	intron	0	0.02	9E-7	6.045757490560675	(LV wall thickness)	    .06	[0.04-0.08] cm increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
07/16/2009	19578364	Bishop DT	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578364?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	9p21.3	9	21816529	CDKN2A	MTAP			4507			rs7023329-A	rs7023329	0	7023329	intron	0	0.50	4E-7	6.397940008672037		   1.18	[1.10-1.25] 	Illumina [~317,000]	N
07/16/2009	19578364	Bishop DT	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578364?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	11q14.3	11	89277878	TYR	TYR			7299			rs1393350-A	rs1393350	0	1393350	intron	0	0.27	2E-14	13.69897000433602		   1.29	[1.21-1.38] 	Illumina [~317,000]	N
07/16/2009	19578364	Bishop DT	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578364?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	16q24.3	16	89689495	MC1R	CDK10			8558			rs258322-A	rs258322	0	258322	intron	0	0.09	3E-27	26.52287874528033		   1.67	[1.52-1.83] 	Illumina [~317,000]	N
07/16/2009	19578364	Bishop DT	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578364?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	16q24.3	16	90000528	MC1R	AFG3L1P			172			rs4785763-A	rs4785763	0	4785763	ncRNA	0	0.32	6E-22	21.22184874961636		   1.36	[1.28-1.45] 	Illumina [~317,000]	N
07/16/2009	19578364	Bishop DT	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578364?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	22q13.1	22	38148291	Intergenic	PLA2G6			8398			rs2284063-?	rs2284063	0	2284063	intron	0	0.37	2E-9	8.698970004336019		   1.20	[1.14-1.28] 	Illumina [~317,000]	N
07/13/2009	19578365	Falchi M	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578365	Genome-wide association study identifies variants at 9p21 and 22q13 associated with development of cutaneous nevi.	Cutaneous nevi	1,524 European ancestry twins	4,107 European ancestry individuals, 3,131 European ancestry cases, 4,276 European ancestry controls	9p21.3	9	21747804	MTAP	KHSRPP1 - MTAP	402359	4507		       47.73	       54.83	rs4636294-A	rs4636294	0	4636294	Intergenic	1	0.48	3E-15	14.52287874528034		    .20	[0.13-0.27] increase in log nevus count	Illumina [297,108]	N
07/13/2009	19578365	Falchi M	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578365	Genome-wide association study identifies variants at 9p21 and 22q13 associated with development of cutaneous nevi.	Cutaneous nevi	1,524 European ancestry twins	4,107 European ancestry individuals, 3,131 European ancestry cases, 4,276 European ancestry controls	22q13.1	22	38148291	PLA2G6	PLA2G6			8398			rs2284063-G	rs2284063	0	2284063	intron	0	0.35	3E-8	7.522878745280337		    .08	[-0.002-0.16] decrease in log nevus count	Illumina [297,108]	N
07/12/2009	19578367	Shete S	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578367?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-G	rs2736100	0	2736100	intron	0	0.49	2E-17	16.69897000433602		   1.27	[1.19-1.37] 	Illumina [454,576]	N
07/12/2009	19578367	Shete S	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578367?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	5p15.33	5	1288432	TERT	TERT			7015			rs2853676-A	rs2853676	0	2853676	intron	0	0.73	4E-14	13.39794000867204		   1.26	[1.20-1.32] 	Illumina [454,576]	N
07/12/2009	19578367	Shete S	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578367?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	8q24.21	8	129479506	CCDC26	LINC00977 - MIR3686	728724	100500839		      238.27	        4.55	rs891835-G	rs891835	0	891835	Intergenic	1	0.79	8E-11	10.09691001300805		   1.24	[1.17-1.30] 	Illumina [454,576]	N
07/12/2009	19578367	Shete S	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578367?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	8q24.21	8	129673211	CCDC26	MIR3686 - GSDMC	100500839	56169		      189.07	       74.99	rs4295627-G	rs4295627	0	4295627	Intergenic	1	0.83	2E-18	17.69897000433602		   1.36	[1.29-1.43] 	Illumina [454,576]	N
07/12/2009	19578367	Shete S	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578367?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	9p21.3	9	22068653	CDKN2A, CDKN2B	CDKN2B-AS1;LOC102724137			100048912;102724137			rs4977756-G	rs4977756	0	4977756	intron;intron	0	0.60	7E-15	14.15490195998574		   1.24	[1.19-1.30] 	Illumina [454,576]	N
07/12/2009	19578367	Shete S	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578367?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	11q23.3	11	118606652	PHLDB1	PHLDB1			23187			rs498872-T	rs498872	0	498872	UTR-5	0	0.69	1E-8	8		   1.18	[1.13-1.24] 	Illumina [454,576]	N
07/12/2009	19578367	Shete S	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578367?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	20q13.33	20	63678486	RTEL1	RTEL1;RTEL1-TNFRSF6B			51750;100533107			rs6010620-G	rs6010620	0	6010620	intron;intron	0	0.23	3E-12	11.52287874528034		   1.28	[1.21-1.35] 	Illumina [454,576]	N
07/12/2009	19578366	Wrensch M	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578366?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.	Glioma (high-grade)	692 European ancestry cases, 3,992 European ancestry controls	176 cases, 174 controls	9p21.3	9	22043927	Intergenic	CDKN2B-AS1			100048912			rs1412829-C	rs1412829	0	1412829	intron	0	0.39	2E-10	9.698970004336017		   1.42	[1.27-1.58] 	Illumina [326,506]	N
07/12/2009	19578366	Wrensch M	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578366?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.	Glioma (high-grade)	692 European ancestry cases, 3,992 European ancestry controls	176 cases, 174 controls	20q13.33	20	63678486	RTEL1	RTEL1;RTEL1-TNFRSF6B			51750;100533107			rs6010620-G	rs6010620	0	6010620	intron;intron	0	0.77	3E-9	8.522878745280337		   1.52	[1.32-1.75] 	Illumina [326,506]	N
07/12/2009	19578366	Wrensch M	07/05/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578366?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.	Glioma (high-grade)	692 European ancestry cases, 3,992 European ancestry controls	176 cases, 174 controls	20q13.33	20	63686867	RTEL1	RTEL1;RTEL1-TNFRSF6B			51750;100533107			rs4809324-C	rs4809324	0	4809324	intron;intron	0	0.10	2E-9	8.698970004336019		   1.60	[1.37-1.87] 	Illumina [326,506]	N
07/24/2009	19578179	Teichert M	07/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578179	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	10q23.33	10	94645572	CYP2C18	HELLS - CTBP2P2	3070	100130970		       42.70	         .79	rs12772169-?	rs12772169	0	12772169	Intergenic	1	NR	8E-12	11.09691001300806		NR	NR	Illumina [~550,000]	N
07/24/2009	19578179	Teichert M	07/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578179	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	19p13.12	19	15879621	CYP4F2	CYP4F2			8529			rs2108622-?	rs2108622	0	2108622	missense	0	NR	3E-10	9.522878745280336		NR	NR	Illumina [~550,000]	N
07/24/2009	19578179	Teichert M	07/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578179	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	3q22.3	3	137728643	CNTN4	NPM1P17 - SOX14	10830	8403		        4.08	       35.65	rs10935268-?	rs10935268	0	10935268	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Illumina [~550,000]	N
07/24/2009	19578179	Teichert M	07/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19578179	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	10q23.33	10	94787706	CYP2C19	CYP2C19			1557			rs12767583-?	rs12767583	0	12767583	intron	0	NR	3E-7	6.522878745280337		NR	NR	Illumina [~550,000]	N
07/12/2009	19567438	Elliott P	07/01/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19567438	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals 	13,615 European ancestry and India Asian ancestry Individuals	1p31.3	1	65624099	LEPR	LEPR			3953			rs6700896-T	rs6700896	0	6700896	intron	0	NR	3E-14	13.52287874528034		  14.80	[12.0-17.6] % decrease	Affymetrix, Illumina & Perlegen [~1.4 million] (imputed)	N
07/12/2009	19567438	Elliott P	07/01/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19567438	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals 	13,615 European ancestry and India Asian ancestry Individuals	1q21.3	1	154446403	IL6R	IL6R			3570			rs4537545-T	rs4537545	0	4537545	intron	0	NR	2E-14	13.69897000433602		  11.50	[8.5-14.4] % decrease	Affymetrix, Illumina & Perlegen [~1.4 million] (imputed)	N
07/12/2009	19567438	Elliott P	07/01/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19567438	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals 	13,615 European ancestry and India Asian ancestry Individuals	1q23.2	1	159728759	CRP	CRP - RPL27P2	1401	646446		       14.17	       30.39	rs7553007-A	rs7553007	0	7553007	Intergenic	1	NR	8E-44	43.09691001300805		  20.70	[18.9-23.4] % decrease	Affymetrix, Illumina & Perlegen [~1.4 million] (imputed)	N
07/12/2009	19567438	Elliott P	07/01/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19567438	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals 	13,615 European ancestry and India Asian ancestry Individuals	12q24.31	12	120983004	HNF1A	HNF1A			6927			rs1183910-T	rs1183910	0	1183910	intron	0	NR	1E-30	30		  13.80	[10.9-16.6] % decrease	Affymetrix, Illumina & Perlegen [~1.4 million] (imputed)	N
07/12/2009	19567438	Elliott P	07/01/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19567438	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals 	13,615 European ancestry and India Asian ancestry Individuals	19q13.32	19	44919689	APOE, APOC1, APOCII	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	NR	5E-27	26.30102999566398		  21.80	[18.1-25.3] % decrease	Affymetrix, Illumina & Perlegen [~1.4 million] (imputed)	N
07/24/2009	19570815	Estrada K	07/01/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19570815	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	2q37.1	2	232290400	DIS3L2, ALPP, NPPC	DIS3L2			129563			rs6717918-T	rs6717918	0	6717918	intron	0	0.78	3E-9	8.522878745280337		    .44	[0.20-0.68] cm increase	Affymetrix, Illumina & Perlegen [2,228,850] (imputed)	N
07/24/2009	19570815	Estrada K	07/01/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19570815	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	22q13.1	22	40301577	TNRC6B, ADSL	TNRC6B			23112			rs139909-T	rs139909	0	139909	intron	0	0.68	2E-7	6.698970004336019		    .25	[0.03-0.47] cm increase	Affymetrix, Illumina & Perlegen [2,228,850] (imputed)	N
07/24/2009	19570815	Estrada K	07/01/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19570815	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	5p13.3	5	32888712	C5orf23, NPR3	NPR3 - RPS8P8	4883	728553		       96.99	      273.44	rs10472828-C	rs10472828	0	10472828	Intergenic	1	0.56	3E-7	6.522878745280337		    .22	[0.04-0.40] cm increase	Affymetrix, Illumina & Perlegen [2,228,850] (imputed)	N
07/24/2009	19570815	Estrada K	07/01/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19570815	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	11q14.1	11	85453707	TMEM126B, TMEM126A	DLG2			1740			rs10898392-T	rs10898392	0	10898392	intron	0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix, Illumina & Perlegen [2,228,850] (imputed)	N
07/24/2009	19570815	Estrada K	07/01/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19570815	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	22q13.1	22	40424147	SGSM3, MKL1	MKL1			57591			rs5757949-T	rs5757949	0	5757949	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix, Illumina & Perlegen [2,228,850] (imputed)	N
07/13/2009	19571811	Purcell SM	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571811	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls	1p21.3	1	96698787	PTBP2	RPL7P9 - PTBP2	653702	58155		       19.15	       22.82	rs7544736-G	rs7544736	0	7544736	Intergenic	1	0.18	6E-7	6.221848749616355		   1.25	 	Affymetrix [739,995]	N
07/13/2009	19571811	Purcell SM	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571811	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls	3q26.33	3	180832914	FXR1	LOC101928882			101928882			rs6782299-T	rs6782299	0	6782299	intron	0	0.73	1E-7	7		   1.10	 	Affymetrix [739,995]	N
07/13/2009	19571811	Purcell SM	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571811	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls	6p22.1	6	27176104	MHC	TRNAI25			100189401			rs13194053-T	rs13194053	0	13194053		0	0.86	1E-8	8		   1.22	 	Affymetrix [739,995]	N
07/13/2009	19571811	Purcell SM	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571811	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls	18q21.2	18	55391007	TCF4	TCF4			6925			rs17594526-T	rs17594526	0	17594526	intron	0	0.03	1E-7	7		   1.44	 	Affymetrix [739,995]	N
07/10/2009	19571809	Shi J	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571809	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p22.1	6	27176104	SLC17A1, SLC17A3, BTN3A2, BTN2A2, BTN3A1, HIST1H2AG, HIST1H2BJ, PRSS16, POM121L2, ZNF184	TRNAI25			100189401			rs13194053-T	rs13194053	0	13194053		0	0.82	1E-8	8	(EA)	   1.28	[NR] 	Affymetrix [up to 843,798]	N
07/10/2009	19571809	Shi J	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571809	Common variants on chromosome 6p22.1 are associated with schizophrenia.	Schizophrenia	2,681 European ancestry cases, 2,653 European ancestry controls, 1,286 African American cases, 973 African American controls	5,327 European ancestry cases, 16,424 European ancestry controls	6p21.32	6	32634492	HLA-DQA1	TRNAI25			100189401			rs9272219-G	rs9272219	0	9272219		0	0.72	7E-8	7.154901959985742	(EA)	   1.14	[NR] 	Affymetrix [up to 843,798]	N
07/10/2009	19571808	Stefansson H	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571808	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	2p16.1	2	57995793	VRK2	VRK2			7444			rs2312147-C	rs2312147	0	2312147	intron	0	NR	3E-7	6.522878745280337		   1.09	[NR] 	Illumina [314,868]	N
07/10/2009	19571808	Stefansson H	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571808	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	5q21.1	5	102523613	SLCO6A1	SLCO6A1 - LINC00492	133482	100861468		       24.60	       57.76	rs1502844-C	rs1502844	0	1502844	Intergenic	1	NR	1E-6	5.999999999999999		   1.09	[NR] 	Illumina [314,868]	N
07/10/2009	19571808	Stefansson H	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571808	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p22.1	6	27281152	MHC, PRSS16	TRNAI25			100189401			rs6932590-T	rs6932590	0	6932590		0	0.78	1E-12	12		   1.16	[NR] 	Illumina [314,868]	N
07/10/2009	19571808	Stefansson H	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571808	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	9q33.1	9	118584139	Intergenic	TPT1P9 - BRINP1	389787	1620		      500.66	      582.49	rs1572299-A	rs1572299	0	1572299	Intergenic	1	NR	4E-6	5.397940008672037		   1.08	[NR] 	Illumina [314,868]	N
07/10/2009	19571808	Stefansson H	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571808	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	11q24.2	11	124736389	NRGN	SPA17 - NRGN	53340	4900		       41.60	        3.54	rs12807809-T	rs12807809	0	12807809	Intergenic	1	0.83	2E-9	8.698970004336019		   1.15	[NR] 	Illumina [314,868]	N
07/10/2009	19571808	Stefansson H	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571808	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	18q21.2	18	55487771	TCF4	TCF4			6925			rs9960767-C	rs9960767	0	9960767	intron	0	0.06	4E-9	8.397940008672036		   1.23	[NR] 	Illumina [314,868]	N
07/10/2009	19571808	Stefansson H	07/01/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19571808	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	6p21.32	6	32205216	MHC, NOTCH4	NOTCH4			4855			rs3131296-G	rs3131296	0	3131296	intron	0	0.87	2E-10	9.698970004336017		   1.19	[NR] 	Illumina [314,868]	N
07/24/2009	19581569	Treutlein J	07/01/2009	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19581569	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	2q35	2	216033935	PECR	PECR			55825			rs7590720-G	rs7590720	0	7590720	intron	0	0.29	1E-8	8		   1.35	[1.22-1.49] 	Illumina [524,396]	N
07/24/2009	19581569	Treutlein J	07/01/2009	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19581569	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	5q15	5	96775667	CAST, ERAP1	ERAP1			51752			rs13160562-G	rs13160562	0	13160562	intron	0	0.68	7E-6	5.154901959985742		   1.27	[1.14-1.41] 	Illumina [524,396]	N
07/24/2009	19581569	Treutlein J	07/01/2009	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19581569	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	5q32	5	146941260	PPP2R2B	PPP2R2B			5521			rs1864982-A	rs1864982	0	1864982	intron	0	0.13	3E-6	5.522878745280337		   1.36	[1.20-1.55] 	Illumina [524,396]	N
07/24/2009	19581569	Treutlein J	07/01/2009	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19581569	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	6q25.1	6	151836746	ESR1	ESR1			2099			rs6902771-C	rs6902771	0	6902771	intron	0	0.51	8E-6	5.096910013008055		   1.24	[1.13-1.36] 	Illumina [524,396]	N
07/24/2009	19581569	Treutlein J	07/01/2009	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19581569	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	14q24.2	14	70885931	Intergenic	MAP3K9 - PCNX	4293	22990		       76.74	       21.47	rs36563-A	rs36563	0	36563	Intergenic	1	0.15	5E-6	5.301029995663981		   1.33	[1.18-1.50] 	Illumina [524,396]	N
07/24/2009	19581569	Treutlein J	07/01/2009	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19581569	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	Xp22.2	23	10263651	Intergenic	CLCN4 - MID1	1183	4281		       25.99	      181.66	rs12388359-T	rs12388359	0	12388359	Intergenic	1	0.11	4E-6	5.397940008672037		   1.61	[1.32-2.00] 	Illumina [524,396]	N
07/01/2009	19561606	Thorleifsson G	06/28/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19561606	Sequence variants in the CLDN14 gene associate with kidney stones and bone mineral density.	Kidney stones	1,507 European ancestry cases, 34,033 European ancestry controls	2,266 European ancestry cases, 8,477 European ancestry controls	21q22.13	21	36461009	CLDN14	CLDN14			23562			rs219780-C	rs219780	0	219780	cds-synon	0	0.79	4E-12	11.39794000867204		   1.25	[1.17-1.33] 	Illumina [303,120]	N
07/01/2009	19557197	Heard-Costa NL	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557197	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	14q31.1	14	79478819	NRXN3	NRXN3			9369			rs10146997-G	rs10146997	0	10146997	intron	0	NR	5E-8	7.30102999566398		    .65	[NR] cm increase	Affymetrix & Illumina [up to 512,349]	N
07/01/2009	19557197	Heard-Costa NL	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557197	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	5p14.3	5	21779045	CDH12	CDH12			1010			rs4701252-?	rs4701252	0	4701252	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix & Illumina [up to 512,349]	N
07/01/2009	19557197	Heard-Costa NL	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557197	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	11p15.4	11	7687050	OVCH2	CYB5R2 - OVCH2	51700	341277		        9.87	        2.39	rs7932813-?	rs7932813	0	7932813	Intergenic	1	NR	5E-6	5.301029995663981		NR	NR	Affymetrix & Illumina [up to 512,349]	N
07/01/2009	19557197	Heard-Costa NL	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557197	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	12q13.12	12	49853685	FAIM2, BCDIN3D	BCDIN3D - RPL35AP28	144233	100271637		       10.56	        9.42	rs7138803-?	rs7138803	0	7138803	Intergenic	1	NR	8E-7	6.096910013008056		NR	NR	Affymetrix & Illumina [up to 512,349]	N
07/01/2009	19557197	Heard-Costa NL	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557197	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	6p12.3	6	51295197	PKHD1	TRNAI25			100189401			rs1555967-?	rs1555967	0	1555967		0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix & Illumina [up to 512,349]	N
07/01/2009	19557197	Heard-Costa NL	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557197	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	16q12.2	16	53769662	FTO	FTO			79068			rs1558902-?	rs1558902	0	1558902	intron	0	NR	5E-19	18.30102999566398		NR	NR	Affymetrix & Illumina [up to 512,349]	N
07/01/2009	19557197	Heard-Costa NL	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557197	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	18q21.32	18	60215554	MC4R	RPS3AP49 - MC4R	400652	4160		       65.15	      155.78	rs489693-?	rs489693	0	489693	Intergenic	1	NR	4E-7	6.397940008672037		NR	NR	Affymetrix & Illumina [up to 512,349]	N
07/01/2009	19557161	Lindgren CM	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557161	Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.	Adiposity	38,580 European ancestry individuals	Up to 102,064 European ancestry individuals	6p12.3	6	50835337	TFAP2B	TFAP2B			7021			rs987237-G	rs987237	0	987237	intron	0	0.164	2E-11	10.69897000433602	(WC)	    .04	[0.03-0.05] z-score unit increase	Affymetrix & Illumina [2,573,738] (imputed)	N
07/01/2009	19557161	Lindgren CM	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557161	Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.	Adiposity	38,580 European ancestry individuals	Up to 102,064 European ancestry individuals	8p23.1	8	10002570	MSRA	MIR124-1 - MSRA	406907	4482		       99.10	       51.75	rs7826222-G	rs7826222	1	545854	Intergenic	1	0.183	9E-9	8.045757490560675	(WC)	    .04	[0.03-0.05] z-score unit increase	Affymetrix & Illumina [2,573,738] (imputed)	N
07/01/2009	19557161	Lindgren CM	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557161	Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.	Adiposity	38,580 European ancestry individuals	Up to 102,064 European ancestry individuals	1q41	1	219470882	LYPLAL1	RIMKLBP2 - ZC3H11B	100422371	643136		      270.18	      137.05	rs2605100-G	rs2605100	0	2605100	Intergenic	1	0.692	3E-8	7.522878745280337	(WHR in women)	    .04	[0.03-0.05] z-score unit increase	Affymetrix & Illumina [2,573,738] (imputed)	N
07/01/2009	19557161	Lindgren CM	06/26/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19557161	Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.	Adiposity	38,580 European ancestry individuals	Up to 102,064 European ancestry individuals	1q42.3	1	235436814	TBCE	TBCE			6905			rs6429082-C	rs6429082	0	6429082	intron	0	0.46	3E-7	6.522878745280337	(WC)	NR	NR	Affymetrix & Illumina [2,573,738] (imputed)	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	16q12.2	16	53791576	FTO	FTO			79068			rs9941349-T	rs9941349	0	9941349	intron	0	0.43	6E-12	11.22184874961635		   1.48	[1.33-1.66] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	10p11.21	10	37693169	ZNF248	MTRNR2L7 - ZNF248	100288485	57209		       90.24	       51.19	rs7474896-T	rs7474896	0	7474896	Intergenic	1	0.14	9E-7	6.045757490560675		   1.46	[1.25-1.69] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	2p16.1	2	54929493	RTN4	EML6			400954			rs6726292-G	rs6726292	0	6726292	intron	0	0.73	1E-6	5.999999999999999		   1.39	[1.22-1.59] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	6p21.31	6	33656956	ITPR3	ITPR3			3710			rs999943-T	rs999943	0	999943	intron	0	0.72	1E-6	5.999999999999999		   1.37	[1.20-1.56] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	4q26	4	117171981	TRAM1L1	TRAM1L1 - RPSAP35	133022	100270916		       86.40	      241.48	rs10433903-T	rs10433903	0	10433903	Intergenic	1	0.66	3E-6	5.522878745280337		   1.33	[1.19-1.52] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	11p14.2	11	26583784	MUC15	ANO3			63982			rs12295638-C	rs12295638	0	12295638	intron	0	0.10	4E-6	5.397940008672037		   1.49	[1.26-1.77] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	5q23.3	5	128363682	FBN2	FBN2			2201			rs374748-G	rs374748	0	374748	intron	0	0.11	4E-6	5.397940008672037		   1.47	[1.25-1.73] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	3p24.2	3	25518740	RARB	RARB			5915			rs1435703-T	rs1435703	0	1435703	intron	0	0.06	4E-6	5.397940008672037		   1.66	[1.34-2.06] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	3p24.3	3	16366982	RAFTLIN	RFTN1			23180			rs12635698-C	rs12635698	0	12635698	intron	0	0.15	5E-6	5.301029995663981		   1.41	[1.21-1.63] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	10q22.1	10	70572684	PRF1	YY1P1 - PRF1	100419963	5551		       86.35	       24.66	rs10999409-T	rs10999409	0	10999409	Intergenic	1	0.45	5E-6	5.301029995663981		   1.30	[1.16-1.45] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	20p12.1	20	15355108	C20orf133	MACROD2			140733			rs6110577-C	rs6110577	0	6110577	intron	0	0.16	5E-6	5.301029995663981		   1.40	[1.21-1.61] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	6p21.31	6	33794465	MLN	MLN			4295			rs2274459-A	rs2274459	0	2274459	nearGene-3	0	0.17	6E-6	5.221848749616356		   1.38	[1.20-1.58] 	Illumina [457,251]	N
07/01/2009	19553259	Cotsapas C	06/24/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19553259	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	2q33.3	2	205971888	FLJ20309	NRP2 - INO80D	8828	54891		      173.76	       21.83	rs7603514-A	rs7603514	0	7603514	Intergenic	1	0.20	8E-6	5.096910013008055		   1.36	[1.19-1.56] 	Illumina [457,251]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	12q14.1	12	57768956	METTL1, CYP27B1	CYP27B1;METTL1			1594;4234			rs703842-A	rs703842	0	703842	nearGene-5;UTR-3	0	0.67	5E-11	10.30102999566398		   1.23	[NR] 	Illumina [302,098]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	20q13.12	20	46111557	CD40	RPL13P2 - CD40	128500	958		       11.36	        6.70	rs6074022-G	rs6074022	0	6074022	Intergenic	1	0.25	1E-7	7		   1.20	[NR] 	Illumina [302,098]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	6p21.32	6	32619077	HLA-DRB1	TRNAI25			100189401			rs9271366-G	rs9271366	0	9271366		0	0.15	7E-184	183.1549019599858		   2.78	[NR] 	Illumina [302,098]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	1p13.1	1	116558335	CD58	CD58			965			rs1335532-A	rs1335532	0	1335532	intron	0	0.87	1E-7	7		   1.28	[NR] 	Illumina [302,098]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	1p22.1	1	92838046	EVI5, RPL5	RPL5;FAM69A			6125;388650			rs6604026-G	rs6604026	0	6604026	intron;intron	0	0.28	3E-6	5.522878745280337		   1.17	[NR] 	Illumina [302,098]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	10p15.1	10	6057082	IL2RA	IL2RA			3559			rs2104286-A	rs2104286	0	2104286	intron	0	0.73	7E-6	5.154901959985742		   1.16	[NR] 	Illumina [302,098]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	8q24.21	8	130080167	ASAP1, DDEF1	ASAP1			50807			rs6984045-C	rs6984045	0	6984045	intron	0	0.02	2E-6	5.698970004336018		   1.59	[NR] 	Illumina [302,098]	N
06/30/2009	19525955	Bahlo	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	16p12.2	16	23055939	NR	HS3ST2 - USP31	9956	57478		      139.60	        5.47	rs8049603-T	rs8049603	0	8049603	Intergenic	1	0.20	1E-6	5.999999999999999		   1.19	[NR] 	Illumina [302,098]	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p21.32	6	32445274	HLA-DRB1	HLA-DRA			3122			rs3135388-A	rs3135388	0	3135388	intron	0	0.22	4E-225	224.397940008672		   2.75	[2.46-3.07] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	6p22.1	6	29737882	HLA-B	HLA-F;HLA-F-AS1			3134;285830			rs2523393-A	rs2523393	0	2523393	intron;intron	0	0.59	1E-17	17		   1.28	[1.18-1.39] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	1p13.1	1	116561593	CD58	CD58;MIR548AC			965;100616384			rs2300747-A	rs2300747	0	2300747	intron;nearGene-5	0	0.88	3E-10	9.522878745280336		   1.30	[1.14-1.47] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	10p15.1	10	6057082	IL2RA	IL2RA			3559			rs2104286-T	rs2104286	0	2104286	intron	0	0.76	9E-8	7.045757490560674		   1.15	[1.04-1.27] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	16p13.13	16	11072831	CLEC16A	CLEC16A			23274			rs11865121-C	rs11865121	0	11865121	intron	0	0.69	2E-7	6.698970004336019		   1.15	[1.04-1.25] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	5p13.2	5	35874473	IL7R	IL7R			3575			rs6897932-C	rs6897932	0	6897932	missense	0	0.75	2E-6	5.698970004336018		   1.12	[1.02-1.23] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	12p13.31	12	6333477	TNFRSF1A	TNFRSF1A			7132			rs4149584-T	rs4149584	0	4149584	missense	0	0.022	5E-6	5.301029995663981		   1.58	[1.15-2.17] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	16q24.1	16	85984057	IRF8	MIR6774 - LINC01082	102466732	100506542		       65.64	      212.12	rs17445836-G	rs17445836	0	17445836	Intergenic	1	0.81	4E-9	8.397940008672036		   1.25	[1.12-1.39] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	11q12.2	11	60993140	CD6	CD6			923			rs17824933-G	rs17824933	0	17824933	intron	0	0.25	4E-9	8.397940008672036		   1.18	[1.07-1.30] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	2q22.1	2	136218685	CXCR4	HNRNPKP2 - UBBP1	389053	7315		       18.18	      110.62	rs882300-C	rs882300	0	882300	Intergenic	1	0.61	1E-7	7		   1.19	[1.09-1.30] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	5p13.1	5	40424324	PTGER4	LINC00603 - PTGER4	102467077	5734		      371.00	      255.61	rs6896969-C	rs6896969	0	6896969	Intergenic	1	0.62	2E-7	6.698970004336019		   1.10	[1.01-1.20] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	12q24.31	12	123172178	MPHOSPH9	MPHOSPH9			10198			rs1790100-G	rs1790100	0	1790100	intron	0	0.24	7E-7	6.154901959985743		   1.11	[1.00-1.22] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	10q22.3	10	79276250	ZMIZ1	ZMIZ1			57178			rs1250540-G	rs1250540	0	1250540	intron	0	0.35	2E-6	5.698970004336018		   1.12	[1.02-1.22] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	3q25.33	3	159981157	IL12A	IL12A-AS1			101928376			rs4680534-C	rs4680534	0	4680534	intron	0	0.37	6E-6	5.221848749616356		   1.12	[1.02-1.22] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/29/2009	19525953	De Jager PL	06/14/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19525953?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	12p13.31	12	6330843	TNFRSF1A	TNFRSF1A			7132			rs1800693-C	rs1800693	0	1800693	intron	0	0.45	2E-11	10.69897000433602		   1.20	[1.10-1.31] 	Affymetrix & Illumina [~2.56 million] (imputed)	N
06/26/2009	19525478	Malarstig A	06/12/2009	Blood	http://www.ncbi.nlm.nih.gov/pubmed/19525478	Identification of ZNF366 and PTPRD as novel determinants of plasma homocysteine in a family-based genome-wide association study.	Homocysteine levels	387 European ancestry individuals from 21 families	1,238 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [283,437]	N
06/19/2009	19508998	Knauff EA	06/09/2009	Hum Reprod	http://www.ncbi.nlm.nih.gov/pubmed/19508998	Genome-wide association study in premature ovarian failure patients suggests ADAMTS19 as a possible candidate gene.	Premature ovarian failure	99 European ancestry cases, 235 European ancestry controls	60 European ancestry cases, 90 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [309,158]	N
06/19/2009	19508968	Zhai G	06/08/2009	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19508968	A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium.	Osteoarthritis	1,804 European ancestry individuals	3,266 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to 535,188]	N
06/17/2009	19503088	Gregersen PK	06/07/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503088?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	2p16.1	2	60937196	REL	REL			5966			rs13017599-A	rs13017599	0	13017599	intron	0	0.34	2E-12	11.69897000433602		   1.21	[1.15-1.28] 	Illumina [278,502]	N
06/17/2009	19503088	Gregersen PK	06/07/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503088?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	2q33.2	2	203829153	CTLA4	NPM1P33 - CTLA4	100131478	1493		       55.65	       38.64	rs231735-T	rs231735	0	231735	Intergenic	1	0.51	6E-9	8.221848749616356		   1.17	[1.11-1.23] 	Illumina [278,502]	N
06/17/2009	19503088	Gregersen PK	06/07/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503088?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	8p23.1	8	11486464	BLK	FAM167A - BLK	83648	640		       19.70	        7.55	rs2736340-A	rs2736340	0	2736340	Intergenic	1	0.24	6E-9	8.221848749616356		   1.19	[1.13-1.27] 	Illumina [278,502]	N
06/17/2009	19503088	Gregersen PK	06/07/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503088?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-?	rs2476601	0	2476601	missense;intron	0	NR	2E-21	20.69897000433602		NR	NR	Illumina [278,502]	N
06/17/2009	19503088	Gregersen PK	06/07/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503088?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	9q33.2	9	120890620	TRAF1, C5	PHF19			26147			rs881375-?	rs881375	0	881375	intron	0	NR	4E-8	7.397940008672037		NR	NR	Illumina [278,502]	N
06/17/2009	19497516	Elmore JR	06/06/2009	J Vasc Surg	http://www.ncbi.nlm.nih.gov/pubmed/19497516?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Identification of a genetic variant associated with abdominal aortic aneurysms on chromosome 3p12.3 by genome wide association.	Abdominal aortic aneurysm	123 cases, 112 controls	827 cases, 1,034 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [306,330] (pooled)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	1q21.1	1	145709377	PDZK1	PDZK1			5174			rs12129861-A	rs12129861	0	12129861	nearGene-5	0	0.46	3E-9	8.522878745280337		    .06	[0.042-0.083] mg/dl decrease	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	0.42	1E-9	8.999999999999998		    .05	[0.035-0.068] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4p16.1	4	9921380	SLC2A9	SLC2A9			56606			rs734553-T	rs734553	0	734553	intron	0	0.77	1E-41	41	(men)	    .22	[0.188-0.252] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4q22.1	4	88131171	ABCG2	ABCG2			9429			rs2231142-T	rs2231142	0	2231142	missense	0	0.11	2E-18	17.69897000433602	(men)	    .22	[0.171-0.270] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	6p22.2	6	25607343	LRRC16A, SCGN	LRRC16A			55604			rs742132-A	rs742132	0	742132	intron	0	0.70	9E-9	8.045757490560675		    .05	[0.036-0.072] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	6p22.2	6	25823216	SLC17A1	SLC17A1			6568			rs1183201-A	rs1183201	0	1183201	intron	0	0.48	3E-14	13.52287874528034		    .06	[0.459-0.078] mg/dl decrease	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	10q21.2	10	59653595	SLC16A9	SLC16A9			220963			rs12356193-A	rs12356193	0	12356193	intron	0	0.83	1E-8	8		    .08	[0.051-0.105] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	11q13.1	11	64563990	SLC22A11	SLC22A11			55867			rs17300741-A	rs17300741	0	17300741	intron	0	0.51	7E-14	13.15490195998574		    .06	[0.046-0.078] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	11q13.1	11	64589600	SLC22A12	SLC22A12			116085			rs505802-T	rs505802	0	505802	nearGene-5	0	0.70	2E-9	8.698970004336019		    .06	[0.038-0.074] mg/dl decrease	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4p16.1	4	9921380	SLC2A9	SLC2A9			56606			rs734553-T	rs734553	0	734553	intron	0	0.77	1E-192	192	(women)	    .40	[0.371-0.423] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/22/2009	19503597	Kolz M	06/05/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19503597	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4q22.1	4	88131171	ABCG2	ABCG2			9429			rs2231142-T	rs2231142	0	2231142	missense	0	0.11	1E-10	10	(women)	    .14	[0.096-0.181] mg/dl increase	Affymetrix and Illumina [2,493,963] (imputed)	N
06/16/2009	19488044	Smith EN	06/02/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19488044	Genome-wide association study of bipolar disorder in European American and African American individuals.	Bipolar disorder	1,001 European ancestry cases, 1,033 European ancestry controls, 345 African American cases, 670 African American controls	1,550 European ancestry individuals from 250 families, 1,263 European ancestry cases, 431 European ancestry controls	19q13.11	19	32426549	DPY19L3	DPY19L3			147991			rs2111504-T	rs2111504	0	2111504	intron	0	0.23	2E-6	5.698970004336018	(AA)	   1.74	[NR] 	Affymetrix [702,044]	N
06/15/2009	19483685	Daly AK	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483685?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	6p21.33	6	31464003	HCP5, HLA-B	HCP5			10866			rs2395029-?	rs2395029	0	2395029	ncRNA	0	0.05	9E-33	32.04575749056067		  45.00	[19.4-105] 	Illumina [866,399]	N
06/15/2009	19483685	Daly AK	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483685?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	3q27.3	3	186933001	ST6GAL1	ST6GAL1;LOC102723861			6480;102723861			rs10937275-?	rs10937275	0	10937275	intron;intron	0	0.09	1E-8	8	(B*5701 positive)	   4.10	[NR] 	Illumina [866,399]	N
06/15/2009	19483685	Daly AK	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483685?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	3q11.2	3	98315682	OR5H2	OR5H8P - OR5K4	79289	403278		        2.84	       38.17	rs1497546-?	rs1497546	0	1497546	Intergenic	1	0.02	2E-7	6.698970004336019		   6.57	[NR] 	Illumina [866,399]	N
06/15/2009	19483685	Daly AK	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483685?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	12q12	12	38349706	ALG10B	ALG10B - CPNE8	144245	144402		       19.98	      302.49	rs6582630-?	rs6582630	0	6582630	Intergenic	1	0.38	1E-6	5.999999999999999		   2.82	[NR] 	Illumina [866,399]	N
06/15/2009	19483685	Daly AK	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483685?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	15q26.2	15	94396279	MCTP2	MCTP2			55784			rs4984390-?	rs4984390	0	4984390	intron	0	0.41	4E-6	5.397940008672037		   3.27	[NR] 	Illumina [866,399]	N
06/15/2009	19483685	Daly AK	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483685?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	9p21.2	9	26614849	C9org82	FAM71BP1 - CAAP1	100421478	79886		      676.41	      225.84	rs10812428-?	rs10812428	0	10812428	Intergenic	1	0.31	1E-6	5.999999999999999		   2.85	[NR] 	Illumina [866,399]	N
06/14/2009	19483682	Kanetsky PA	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483682	Common variation in KITLG and at 5q31.3 predisposes to testicular germ cell cancer.	Testicular cancer	277 European ancestry cases, 919 European ancestry controls	371 European ancestry  cases with their 408 parents, 860 European ancestry controls	12q21.32	12	88560182	KITLG	KITLG			4254			rs4474514-A	rs4474514	0	4474514	intron	0	NR	6E-15	14.22184874961635		   3.07	[2.29-4.13] 	Affymetrix [611,254]	N
06/14/2009	19483681	Rapley EA	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483681?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	1q24.1	1	165862412	Intergenic	UCK2			7371			rs4657482-A	rs4657482	0	4657482	intron	0	0.33	2E-6	5.698970004336018		   1.14	[0.99-1.31] 	Illumina [307,666]	N
06/14/2009	19483681	Rapley EA	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483681?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	4q24	4	103216633	Intergenic	CENPE - DDX3YP3	1062	650560		       18.22	      355.46	rs4699052-C	rs4699052	0	4699052	Intergenic	1	0.61	2E-7	6.698970004336019		   1.21	[1.05-1.39] 	Illumina [307,666]	N
06/14/2009	19483681	Rapley EA	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483681?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	5q31.3	5	142302223	SPRY4	NDFIP1 - SPRY4	80762	81848		      147.78	        8.20	rs4624820-A	rs4624820	0	4624820	Intergenic	1	0.54	3E-13	12.52287874528034		   1.37	[1.19-1.58] 	Illumina [307,666]	N
06/14/2009	19483681	Rapley EA	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483681?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	6p21.31	6	33574761	BAK1	BAK1			578			rs210138-G	rs210138	0	210138	intron	0	0.20	1E-13	13		   1.50	[1.28-1.75] 	Illumina [307,666]	N
06/14/2009	19483681	Rapley EA	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483681?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	12q21.32	12	88496894	KITLG	KITLG			4254			rs995030-G	rs995030	0	995030	UTR-3	0	0.80	1E-31	31		   2.55	[2.05-3.19] 	Illumina [307,666]	N
06/14/2009	19483681	Rapley EA	05/31/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19483681?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	12q21.32	12	88496894	KITLG	KITLG			4254			rs1508595-G	rs995030	0	995030	UTR-3	0	0.83	3E-30	29.52287874528033		   2.69	[2.10-3.44] 	Illumina [307,666]	N
06/14/2009	19478819	Ng CC	05/29/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19478819	A genome-wide association study identifies ITGA9 conferring risk of nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	111 Malaysian Chinese ancestry cases, 260 Malaysian Chinese ancestry controls	168 Malaysian Chinese ancestry cases, 252 Malaysian Chinese ancestry controls	3p22.2	3	37477054	ITGA9	ITGA9			3680			rs189897-A	rs189897	0	189897	intron	0	0.09	7E-8	7.154901959985742		   3.18	[1.94-5.21] 	Illumina [533,048]	N
06/16/2009	19478329	Aston KI	05/28/2009	J Androl	http://www.ncbi.nlm.nih.gov/pubmed/19478329	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	3q11.2	3	95969999	ARL6	MTHFD2P1 - HNRNPKP4	100287639	644063		      286.81	      379.56	rs9814870-?	rs9814870	0	9814870	Intergenic	1	0.15	7E-7	6.154901959985743	(oligozoospermia)	NR	NR	Illumina [314,776]	N
06/16/2009	19478329	Aston KI	05/28/2009	J Androl	http://www.ncbi.nlm.nih.gov/pubmed/19478329	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	20q13.2	20	51943113	SALL4	RNU7-6P - ZFP64	100147749	55734		       38.08	      140.90	rs6068020-?	rs6068020	0	6068020	Intergenic	1	0.49	5E-7	6.30102999566398	(azoospermia)	NR	NR	Illumina [314,776]	N
06/16/2009	19478329	Aston KI	05/28/2009	J Androl	http://www.ncbi.nlm.nih.gov/pubmed/19478329	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	12p12.2	12	20368720	PDE3A	PDE3A			5139			rs10841496-?	rs10841496	0	10841496	UTR-5	0	0.58	5E-7	6.30102999566398	(azoospermia)	NR	NR	Illumina [314,776]	N
06/16/2009	19478329	Aston KI	05/28/2009	J Androl	http://www.ncbi.nlm.nih.gov/pubmed/19478329	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	2q22.1	2	139390262	NXPH2	AHCYP4 - MRPS18BP2	129560	359763		      487.52	      278.27	rs1399645-?	rs1399645	0	1399645	Intergenic	1	0.02	9E-7	6.045757490560675	(azoospermia)	NR	NR	Illumina [314,776]	N
06/16/2009	19478329	Aston KI	05/28/2009	J Androl	http://www.ncbi.nlm.nih.gov/pubmed/19478329	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	12p13.32	12	3705072	EFCAB4B	EFCAB4B;LOC102723813			84766;102723813			rs10848911-?	rs10848911	0	10848911	intron;intron	0	0.11	4E-6	5.397940008672037	(azoospermia)	NR	NR	Illumina [314,776]	N
06/10/2009	19456320	Ma D	05/28/2009	Ann Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19456320?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of autism reveals a common novel risk locus at 5p14.1.	Autism	1,390 European ancestry individuals from 438 families	2,390 European ancestry individuals from 457 families	5p14.1	5	25902233	Intergenic	CDH10 - MSNP1	1008	4479		     1257.26	        7.07	rs10038113-T	rs10038113	0	10038113	Intergenic	1	0.59	3E-6	5.522878745280337		   1.33	[1.11-1.43] 	Illumina [775,311]	N
06/14/2009	19465909	Jallow M	05/24/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19465909	Genome-wide and fine-resolution association analysis of malaria in West Africa.	Malaria	958 Gambian ancestry cases, 1,382 Gambian ancestry controls	1,087 Gambian ancestry cases, 2,376 Gambian ancestry controls	7p12.1	7	50555014	DDC	DDC			1644			rs1451375-?	rs1451375	0	1451375	intron	0	0.78	6E-6	5.221848749616356		   1.33	[1.18-1.52] 	Affymetrix [402,814]	N
06/14/2009	19465909	Jallow M	05/24/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19465909	Genome-wide and fine-resolution association analysis of malaria in West Africa.	Malaria	958 Gambian ancestry cases, 1,382 Gambian ancestry controls	1,087 Gambian ancestry cases, 2,376 Gambian ancestry controls	11p15.4	11	5204405	HBB	OR51V1 - HBB	283111	3043		        3.71	       21.06	rs11036238-?	rs11036238	0	11036238	Intergenic	1	0.14	4E-11	10.39794000867204		   1.59	[1.39-1.82] 	Affymetrix [402,814]	N
06/14/2009	19465909	Jallow M	05/24/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19465909	Genome-wide and fine-resolution association analysis of malaria in West Africa.	Malaria	958 Gambian ancestry cases, 1,382 Gambian ancestry controls	1,087 Gambian ancestry cases, 2,376 Gambian ancestry controls	17p13.1	17	10670842	SCO1	MYH3 - SCO1	4621	6341		       13.53	        9.49	rs6503319-T	rs6503319	0	6503319	Intergenic	1	0.45	7E-7	6.154901959985743		   1.21	[1.12-1.31] 	Affymetrix [402,814]	N
06/04/2009	19461586	Norris JM	05/21/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19461586	Genome-wide association study and follow-up analysis of adiposity traits in Hispanic Americans: the IRAS Family Study.	Obesity-related traits	229 Hispanic individuals from 34 families	961 Hispanic individuals from 59 families	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [309,200]	N
06/21/2009	19458352	Hirschfield GM	05/20/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19458352?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cirrhosis	505 European ancestry cases, 1,507 European ancestry controls	526 Eurpopean ancestry cases, 1,206 European ancestry controls	3q25.33	3	160011091	IL12A	IL12A-AS1			101928376			rs6441286-G	rs6441286	0	6441286	intron	0	0.39	2E-14	13.69897000433602		   1.54	[1.38-1.72] 	Illumina [305,724]	N
06/21/2009	19458352	Hirschfield GM	05/20/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19458352?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cirrhosis	505 European ancestry cases, 1,507 European ancestry controls	526 Eurpopean ancestry cases, 1,206 European ancestry controls	1p31.3	1	67356694	IL12RB2	IL12RB2			3595			rs3790567-A	rs3790567	0	3790567	intron	0	0.24	3E-11	10.52287874528034		   1.51	[1.33-1.70] 	Illumina [305,724]	N
06/21/2009	19458352	Hirschfield GM	05/20/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19458352?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cirrhosis	505 European ancestry cases, 1,507 European ancestry controls	526 Eurpopean ancestry cases, 1,206 European ancestry controls	17q12	17	39766006	IKZF3	IKZF3			22806			rs907092-A	rs907092	0	907092	cds-synon	0	0.45	8E-6	5.096910013008055		   1.29	[1.15-1.44] 	Illumina [305,724]	N
06/21/2009	19458352	Hirschfield GM	05/20/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19458352?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cirrhosis	505 European ancestry cases, 1,507 European ancestry controls	526 Eurpopean ancestry cases, 1,206 European ancestry controls	7q32.1	7	128954129	IRF5-TNPO3	TNPO3			23534			rs10488631-G	rs10488631	0	10488631	nearGene-3	0	NR	2E-7	6.698970004336019		   1.52	[1.30-1.78] 	Illumina [305,724]	N
06/21/2009	19458352	Hirschfield GM	05/20/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19458352?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cirrhosis	505 European ancestry cases, 1,507 European ancestry controls	526 Eurpopean ancestry cases, 1,206 European ancestry controls	3q25.33	3	160623108	ARF7	RPL6P8 - ARL14	100133100	80117		       37.32	       54.05	rs4679904-G	rs4679904	0	4679904	Intergenic	1	0.72	1E-6	5.999999999999999		   1.38	[1.21-1.57] 	Illumina [305,724]	N
06/21/2009	19458352	Hirschfield GM	05/20/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19458352?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cirrhosis	505 European ancestry cases, 1,507 European ancestry controls	526 Eurpopean ancestry cases, 1,206 European ancestry controls	6p21.32[rs2395148]; 6p21.32[rs3135363]			c6orf10, BTNL2, HLA-DQB1	 - 						4-SNP haplotype-1	rs2395148, rs3135363, rs2856683, rs9357152					0.01	1E-10		(AACA)	NR	NR	Illumina [305,724]	N
06/21/2009	19458352	Hirschfield GM	05/20/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19458352?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cirrhosis	505 European ancestry cases, 1,507 European ancestry controls	526 Eurpopean ancestry cases, 1,206 European ancestry controls	6p21.32[rs2395148]; 6p21.32[rs3135363]			c6orf10, BTNL2, HLA-DQB1	 - 						4-SNP haplotype-2	rs2395148, rs3135363, rs2856683, rs9357152					0.20	7E-10		(CACA)	NR	NR	Illumina [305,724]	N
06/14/2009	19454037	Arnett DK	05/19/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19454037	Genome-wide association study identifies single-nucleotide polymorphism in KCNB1 associated with left ventricular mass in humans: the HyperGEN Study.	Left ventricular mass	101 European ancestry cases, 101 European ancestry controls	704 European ancestry individuals, 1,467 African American individuals	5p13.2	5	34628522	RAI14	C1QTNF3 - RAI14	114899	26064		      585.26	       27.81	rs409045-?	rs409045	0	409045	Intergenic	1	0.38	8E-7	6.096910013008056	(Caucasian)	    .00	[NR] (LVMI)	Affymetrix [96,258]	N
06/14/2009	19454037	Arnett DK	05/19/2009	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19454037	Genome-wide association study identifies single-nucleotide polymorphism in KCNB1 associated with left ventricular mass in humans: the HyperGEN Study.	Left ventricular mass	101 European ancestry cases, 101 European ancestry controls	704 European ancestry individuals, 1,467 African American individuals	7q21.11	7	80629494	CD36	CD36			948			rs10499859-?	rs10499859	0	10499859	intron	0	0.45	3E-6	5.522878745280337	(Caucasian)	    .09	[NR] (LVMI)	Affymetrix [96,258]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	18q12.1	18	31693166	B4GALT6	B4GALT6			9331			rs10438933-G	rs10438933	0	10438933	intron	0	0.12	1E-6	5.999999999999999	(susceptibilty)	   1.30	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	1q42.2	1	232019405	DISC1	DISC1;TSNAX-DISC1			27185;100303453			rs16856202-C	rs16856202	0	16856202	intron;intron	0	0.04	8E-6	5.096910013008055	(susceptibilty)	   2.00	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	1p34.2	1	39667123	NT5C1A	NT5C1A			84618			rs873917-T	rs873917	0	873917	intron	0	0.29	8E-6	5.096910013008055	(susceptibilty)	   1.16	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2q24.2	2	160524377	RBMS1	MIR4785 - TANK	100616364	10010		      116.50	      612.55	rs10192369-T	rs10192369	0	10192369	Intergenic	1	0.47	9E-6	5.045757490560675	(susceptibilty)	   1.17	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2p16.1	2	55781769	EFEMP1	PNPT1 - EFEMP1	87178	2202		       87.86	       84.19	rs7577894-T	rs7577894	0	7577894	Intergenic	1	0.39	1E-6	5.999999999999999	(site of onset)	   1.41	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2q24.3	2	166521468	SCN7A	SCN7A - XIRP2	6332	129446		       27.24	      367.02	rs13015447-G	rs13015447	0	13015447	Intergenic	1	0.34	7E-6	5.154901959985742	(site of onset)	   1.41	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	5q23.1	5	116392141	SEMA6A	LOC101927212			101927212			rs7702057-A	rs7702057	0	7702057	intron	0	0.03	8E-6	5.096910013008055	(site of onset)	   2.05	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	17q24.3	17	72699964	SLC39A11	SLC39A11			201266			rs8066857-C	rs8066857	0	8066857	intron	0	NR	8E-6	5.096910013008055	(site of onset)	   1.48	[NR] 	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	6p22.3	6	16741802	ATXN1	ATXN1			6310			rs697739-A	rs697739	0	697739	intron	0	NR	4E-6	5.397940008672037	(age of onset)	   2.04	[1.18-2.90] years younger	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	3p26.3	3	2583254	CNTN4	CNTN4			152330			rs2619566-G	rs2619566	0	2619566	intron	0	NR	7E-6	5.154901959985742	(age of onset)	   3.03	[1.71-4.35] years younger	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	1q24.2	1	170026661	KIFAP3	KIFAP3			22920			rs1541160-C	rs1541160	0	1541160	intron	0	NR	2E-8	7.698970004336018	(survival)	    .58	[0.38-0.78] years older	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	7q36.1	7	149506571	ZNF746	ZNF746 - TRNAC11	155061	100189146		        8.73	       39.97	rs855913-A	rs855913	0	855913	Intergenic	1	NR	4E-8	7.397940008672037	(survival)	   1.08	[0.70-1.46] years older	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	5q23.2	5	123783871	CSNK1G3	KRT18P16 - HMGB1P29	391827	100873892		      146.40	      436.71	rs11241713-T	rs11241713	0	11241713	Intergenic	1	NR	3E-6	5.522878745280337	(survival)	    .79	[0.46-1.12] years older	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	1q24.2	1	169707345	SELL	SELL			6402			rs3177980-G	rs3177980	1	1131498	missense	0	NR	4E-6	5.397940008672037	(survival)	    .51	[0.46-0.56] years older	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2p22.1	2	38882417	NR	MORN2			729967			rs3099950-?	rs3099950	0	3099950	missense	0	NR	8E-6	5.096910013008055	(survival)	NR	NR	Illumina [288,357]	N
06/04/2009	19451621	Landers JE	05/18/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19451621?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	21q21.1	21	16673913	NR	MIR125B2 - NEK4P1	406912	100421718		       83.59	      536.56	rs2823962-?	rs2823962	0	2823962	Intergenic	1	NR	9E-6	5.045757490560675	(survival)	NR	NR	Illumina [288,357]	N
06/04/2009	19448621	He C	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448621	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry women	NA	6q16.3	6	104959787	LIN28B	LIN28B			389421			rs314277-A	rs314277	0	314277	intron	0	0.14	3E-13	12.52287874528034	(age at menarche)	    .16	[0.12-0.20] years older	Illumina [317,759]	N
06/04/2009	19448621	He C	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448621	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry women	NA	9q31.2	9	106174393	Intergenic	SLC25A6P5 - MIR8081	100129319	102465995		      323.80	      426.54	rs7861820-C	rs7861820	0	7861820	Intergenic	1	0.48	3E-9	8.522878745280337	(age at menarche)	    .09	[0.06-0.12] years younger	Illumina [317,759]	N
06/04/2009	19448621	He C	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448621	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry women	NA	20p12.3	20	5967581	TRMT6, MCM8	MCM8			84515			rs16991615-A	rs16991615	0	16991615	missense	0	0.06	1E-21	21	(age at natural menopause)	   1.07	[0.85-1.29] years older	Illumina [317,759]	N
06/04/2009	19448621	He C	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448621	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry women	NA	19q13.42	19	55308477	BRSK1	BRSK1			84446			rs1172822-T	rs1172822	0	1172822	intron	0	0.37	2E-19	18.69897000433602	(age at natural menopause)	    .49	[0.38-0.60] years younger	Illumina [317,759]	N
06/04/2009	19448621	He C	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448621	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry women	NA	5q35.2	5	176951573	UIMC1	UIMC1			51720			rs365132-T	rs365132	0	365132	cds-synon	0	0.49	8E-14	13.09691001300805	(age at natural menopause)	    .39	[0.29-0.49] years older	Illumina [317,759]	N
06/04/2009	19448621	He C	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448621	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry women	NA	6p24.2	6	10897255	GCM2, SYCP2L	SYCP2L			221711			rs2153157-T	rs2153157	0	2153157	intron	0	0.49	5E-8	7.30102999566398	(age at natural menopause)	    .29	[0.19-0.39] years older	Illumina [317,759]	N
06/01/2009	19448623	Ong KK	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448623?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variation in LIN28B is associated with the timing of puberty.	Menarche (age at onset)	4,714 European ancestry women	16,373 women	6q16.3	6	104960124	LIN28B	LIN28B			389421			rs314276-C	rs314276	0	314276	intron	0	0.67	4E-16	15.39794000867204		    .14	[0.11-0.17] years younger	Affymetrix [up to 390,631]	N
05/28/2009	19448620	Perry JR	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448620?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data identifies two loci influencing age at menarche.	Menarche (age at onset)	17,510 European ancestry women	NA	9q31.2	9	106204807	TMEM38B, SLC44A1, FKTN, FSD1L, TAL2, ZNF462	SLC25A6P5 - MIR8081	100129319	102465995		      354.21	      396.12	rs2090409-A	rs2090409	0	2090409	Intergenic	1	0.31	2E-9	8.698970004336019		    .10	[0.06-0.14] years younger	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/28/2009	19448620	Perry JR	05/17/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448620?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data identifies two loci influencing age at menarche.	Menarche (age at onset)	17,510 European ancestry women	NA	6q16.3	6	104931079	LIN28B	HACE1 - LINC00577	57531	100113403		       71.16	        5.22	rs7759938-C	rs7759938	0	7759938	Intergenic	1	0.33	7E-9	8.154901959985743		    .09	[0.05-0.13] years older	Affymetrix & Illumina [~2.5 million] (imputed)	N
06/01/2009	19448189	Perlis RH	05/15/2009	Am J Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19448189?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genomewide association study of response to lithium for prevention of recurrence in bipolar disorder.	Response to lithium treatment in bipolar disorder	458 lithium-treated cases, 719 non-lithium treated cases	359 European ancestry lithium-treated cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~1.4 million] (imputed)	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	19q13.42	19	55308477	BRSK1, TMEM224, SUV420H2	BRSK1			84446			rs1172822-T	rs1172822	0	1172822	intron	0	0.39	6E-11	10.22184874961635		    .39	[0.27-0.51] years younger	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	20p12.3	20	5954739	MCM8	MCM8			84515			rs236114-A	rs236114	0	236114	intron	0	0.21	1E-10	10		    .50	[0.34-0.65] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	13q34	13	111568950	LOC121793, ARHGEF7	TEX29 - SOX1	121793	6656		      224.70	      498.65	rs7333181-A	rs7333181	0	7333181	Intergenic	1	0.12	3E-8	7.522878745280337		    .52	[0.34-0.70] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	16q24.2	16	87957445	NR	BANP			54971			rs4843747-?	rs4843747	0	4843747	intron	0	NR	2E-7	6.698970004336019		    .39	[0.24-0.54] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	11q25	11	133697090	NR	OPCML - SPATA19	4978	219938		      164.58	       28.31	rs4397868-?	rs4397868	0	4397868	Intergenic	1	NR	3E-7	6.522878745280337		    .40	[0.25-0.55] years younger	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	8p11.23	8	37829231	NR	GPR124			25960			rs6468442-?	rs6468442	0	6468442	intron	0	NR	3E-7	6.522878745280337		    .39	[0.24-0.54] years younger	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	7q22.3	7	106855364	NR	RNA5SP236 - PIK3CG	100873494	5294		       73.65	        9.91	rs17153527-?	rs17153527	0	17153527	Intergenic	1	NR	4E-7	6.397940008672037		    .51	[0.31-0.71] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	6p21.33	6	31870936	NR	SLC44A4			80736			rs494620-?	rs494620	0	494620	cds-synon	0	NR	5E-7	6.30102999566398		    .30	[0.18-0.42] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	9q21.31	9	79730966	NR	TLE4 - NPAP1P6	7091	100533675		        4.08	      132.05	rs2151145-?	rs2151145	0	2151145	Intergenic	1	NR	1E-7	7		    .41	[0.26-0.56] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	3q26.2	3	170776620	NR	RPL28P1 - RNY5P3	402149	100379664		      122.32	       65.48	rs4955755-?	rs4955755	0	4955755	Intergenic	1	NR	7E-7	6.154901959985743		    .34	[0.21-0.47] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	2q23.3	2	149840634	NR	LOC101929231			101929231			rs11889862-?	rs11889862	0	11889862	intron	0	NR	2E-6	5.698970004336018		    .36	[0.21-0.51] years younger	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	20p12.3	20	6054582	NR	LRRN4			164312			rs2326679-?	rs2326679	0	2326679	nearGene-5	0	NR	2E-6	5.698970004336018		    .32	[0.19-0.45] years older	Illumina [315,418]	N
05/28/2009	19448619	Stolk L	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448619?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry women	2,560 European ancestry women	14q32.31	14	101988596	NR	DYNC1H1			1778			rs4906172-?	rs4906172	0	4906172	intron	0	NR	3E-6	5.522878745280337		    .36	[0.21-0.51] years younger	Illumina [315,418]	N
06/01/2009	19448622	Sulem P	05/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19448622	Genome-wide association study identifies sequence variants on 6q21 associated with age at menarche.	Menarche (age at onset)	15,297 European ancestry women	10,040 European ancestry women	6q16.3	6	104952962	LIN28B, HACE1, E3 ubiquitin protein ligase 1, BVES, POPDC3	LIN28B			389421			rs314280-T	rs314280	0	314280	intron	0	0.48	2E-14	13.69897000433602		   1.20	[0.9-1.5] months older	Illumina [304,226]	N
05/26/2009	19442274	Fei Y	05/14/2009	Arthritis Res Ther	http://www.ncbi.nlm.nih.gov/pubmed/19442274?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Identification of novel genetic susceptibility loci for Beh&#x000e7;et's disease using a genome-wide association study.	Behcet's disease	152 cases, 170 controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~500,000] (pooled)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-?	rs2476601	0	2476601	missense;intron	0	NR	9E-85	84.04575749056066		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	2q24.2	2	162267541	IFIH1	IFIH1			64135			rs1990760-?	rs1990760	0	1990760	missense	0	NR	7E-9	8.154901959985743		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	2q33.2	2	203874196	CTLA4	CTLA4			1493			rs3087243-?	rs3087243	0	3087243	nearGene-3	0	NR	1E-15	15		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	4q27	4	122211337	IL2	KIAA1109			84162			rs4505848-?	rs4505848	0	4505848	intron	0	NR	5E-13	12.30102999566398		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	6q15	6	90248512	BACH2	BACH2			60468			rs11755527-?	rs11755527	0	11755527	intron	0	NR	5E-8	7.30102999566398		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	10p15.1	10	6081532	IL2RA	RPL32P23 - RBM17	644020	84991		        9.61	        7.45	rs12251307-?	rs12251307	0	12251307	Intergenic	1	NR	1E-13	13		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	10p15.1	10	6430929	PRKCQ	PRKCQ			5588			rs11258747-?	rs11258747	0	11258747	cds-synon	0	NR	1E-7	7		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	11p15.5	11	2191936	INS	MIR4686 - ASCL2	100616126	430		       18.80	       76.56	rs7111341-?	rs7111341	0	7111341	Intergenic	1	NR	4E-48	47.39794000867204		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	12q13.2	12	56088396	ERBB3	ERBB3			2065			rs2292239-?	rs2292239	0	2292239	intron	0	NR	2E-25	24.69897000433602		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-?	rs3184504	0	3184504	missense	0	NR	3E-27	26.52287874528033		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	15q25.1	15	78943104	CTSH	CTSH			1512			rs3825932-?	rs3825932	0	3825932	intron	0	NR	8E-8	7.096910013008055		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	16p13.13	16	11086016	CLEC16A	CLEC16A			23274			rs12708716-?	rs12708716	0	12708716	intron	0	NR	2E-16	15.69897000433602		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	18p11.21	18	12809341	PTPN2	PTPN2			5771			rs1893217-?	rs1893217	0	1893217	intron	0	NR	4E-15	14.39794000867204		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	21q22.3	21	42416077	UBASH3A	UBASH3A			53347			rs11203203-?	rs11203203	0	11203203	intron	0	NR	2E-9	8.698970004336019		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	22q12.3	22	37195278	C1QTNF6	C1QTNF6 - SSTR3	114904	6753		        4.35	        8.96	rs229541-?	rs229541	0	229541	Intergenic	1	NR	2E-7	6.698970004336019		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	1q32.1	1	206766559	IL10	RPS14P1 - IL10	100271063	3586		       70.26	        1.04	rs3024505-?	rs3024505	0	3024505	Intergenic	1	0.83	2E-9	8.698970004336019		   1.19	[1.10-1.30] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	4p15.2	4	26083889	Intergenic	SMIM20 - RBPJ	389203	3516		      154.01	       79.61	rs10517086-A	rs10517086	0	10517086	Intergenic	1	0.30	5E-10	9.301029995663981		   1.09	[1.02-1.17] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	6q22.32	6	126377573	C6orf173	CENPW			387103			rs9388489-G	rs9388489	0	9388489	intron	0	0.45	4E-13	12.39794000867204		   1.17	[1.10-1.24] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	7p15.2	7	26852046	Intergenic	SKAP2			8935			rs7804356-?	rs7804356	0	7804356	intron	0	0.76	5E-9	8.301029995663981		   1.14	[1.06-1.22] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	7p12.1	7	50959497	COBL	RPL39P23 - COBL	100271203	23242		      115.77	       56.72	rs4948088-?	rs4948088	0	4948088	Intergenic	1	0.95	4E-8	7.397940008672037		   1.30	[1.11-1.49] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	9p24.2	9	4291747	GLIS3	GLIS3			169792			rs7020673-?	rs7020673	0	7020673	intron	0	0.50	5E-12	11.30102999566398		   1.14	[1.08-1.20] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	10q23.31	10	88263276	C10orf59	VN1R55P - RNLS	100312808	55328		        3.97	       10.59	rs10509540-?	rs10509540	0	10509540	Intergenic	1	0.71	1E-28	28		   1.33	[1.25-1.43] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	12p13.31	12	9757568	CD69	CD69			969			rs4763879-A	rs4763879	0	4763879	intron	0	0.37	2E-11	10.69897000433602		   1.09	[1.02-1.16] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	14q24.1	14	68796882	Intergenic	ZFP36L1			677			rs1465788-?	rs1465788	0	1465788	nearGene-5	0	0.71	2E-12	11.69897000433602		   1.16	[1.10-1.25] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	14q32.2	14	98032614	Intergenic	C14orf64 - C14orf177	388011	283598		       54.49	      679.00	rs4900384-G	rs4900384	0	4900384	Intergenic	1	0.29	4E-9	8.397940008672036		   1.09	[1.02-1.16] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	16p11.2	16	28528527	IL27	IL27 - NUPR1	246778	26471		       21.69	        8.81	rs4788084-G	rs4788084	0	4788084	Intergenic	1	0.42	3E-13	12.52287874528034		   1.09	[1.02-1.16] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	16q23.1	16	75213347	Intergenic	CTRB2 - CTRB1	440387	1504		        6.17	        5.64	rs7202877-G	rs7202877	0	7202877	Intergenic	1	0.10	3E-15	14.52287874528034		   1.28	[1.17-1.41] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	17q12	17	39909987	ORMDL3	GSDMB			55876			rs2290400-?	rs2290400	0	2290400	intron	0	0.50	6E-13	12.22184874961636		   1.15	[1.08-1.22] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	17q21.2	17	40614034	Intergenic	CCR7 - SMARCE1	1236	6605		       48.55	       13.69	rs7221109-?	rs7221109	0	7221109	Intergenic	1	0.65	1E-9	8.999999999999998		   1.05	[0.99-1.12] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	19q13.32	19	46705224	Intergenic	PRKD2			25865			rs425105-?	rs425105	0	425105	intron	0	0.84	3E-11	10.52287874528034		   1.16	[1.08-1.27] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	20p13	20	1629905	Intergenic	SIRPG			55423			rs2281808-?	rs2281808	0	2281808	intron	0	0.64	1E-11	11		   1.11	[1.05-1.19] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	22q12.2	22	30185733	Intergenic	RPS3AP51 - LIF	100271600	3976		       48.34	       54.71	rs5753037-T	rs5753037	0	5753037	Intergenic	1	0.39	3E-16	15.52287874528034		   1.10	[1.04-1.17] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	Xq28	23	154717327	Intergenic	GAB3			139716			rs2664170-G	rs2664170	0	2664170	intron	0	0.32	8E-9	8.096910013008056		   1.16	[1.07-1.24] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	1p31.3	1	63643100	PGM1	PGM1			5236			rs2269241-G	rs2269241	0	2269241	intron	0	0.19	4E-7	6.397940008672037		   1.10	[1.02-1.18] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	2p24.3	2	12500615	Intergenic	LOC100506457			100506457			rs1534422-G	rs1534422	0	1534422	intron	0	0.46	2E-6	5.698970004336018		   1.08	[1.02-1.15] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	16p12.3	16	20331250	Intergenic	GP2 - UMOD	2813	7369		        2.89	        1.80	rs12444268-A	rs12444268	0	12444268	Intergenic	1	0.30	2E-7	6.698970004336019		   1.10	[1.03-1.17] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	17p13.1	17	7730374	Intergenic	DNAH2			146754			rs16956936-?	rs16956936	0	16956936	intron	0	0.86	5E-7	6.30102999566398		   1.09	[1.00-1.19] 	Affymetrix & Illumina [841,622] (imputed)	N
06/01/2009	19430480	Barrett JC	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430480?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 cases, 9,045 controls	4,267 cases, 4,670 controls, 4,342 trios from 2,319 families	6p21.32	6	32440750	MHC	HLA-DRA			3122			rs9268645-?	rs9268645	0	9268645	intron	0	NR	1E-100	100		NR	NR	Affymetrix & Illumina [841,622] (imputed)	N
05/27/2009	19430482	Kottgen A	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430482?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	16p12.3	16	20356368	UMOD	UMOD - PDILT	7369	204474		        3.49	        2.80	rs12917707-G	rs12917707	0	12917707	Intergenic	1	0.82	2E-12	11.69897000433602	(CKD)	   1.25	[1.18-1.33] 	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/27/2009	19430482	Kottgen A	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430482?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	4q21.1	4	76447694	SHROOM3	SHROOM3			57619			rs17319721-A	rs17319721	0	17319721	intron	0	0.44	1E-12	12	(eGFRcrea)	    .01	[0.008-0.016] ml/min/1.73m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/27/2009	19430482	Kottgen A	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430482?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	15q21.1	15	45406595	SPATA5L1, GATM	SPATA5L1			79029			rs2467853-G	rs2467853	0	2467853	intron	0	0.38	6E-14	13.22184874961636	(eGFRcrea)	    .01	[0.009-0.017] ml/min/1.73m2 decrease	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/27/2009	19430482	Kottgen A	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430482?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	16p12.3	16	20356368	UMOD	UMOD - PDILT	7369	204474		        3.49	        2.80	rs12917707-T	rs12917707	0	12917707	Intergenic	1	0.18	5E-16	15.30102999566398	(eGFRcrea)	    .02	[0.014-0.022] ml/min/1.73m2 increase	Affymetrix & Illumina [~2.5 million] (imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	3p22.1	3	41871159	ULK4	ULK4			54986			rs9815354-A	rs9815354	0	9815354	intron	0	0.17	3E-9	8.522878745280337		    .49	[0.33-0.65] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	10p12.31	10	18419869	CACNB2	CACNB2			783			rs11014166-A	rs11014166	0	11014166	intron	0	0.66	1E-8	8		    .37	[0.25-0.49] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	11p15.1	11	16895672	PLEKHA7	PLEKHA7			144100			rs11024074-T	rs11024074	0	11024074	intron	0	0.72	1E-6	5.999999999999999		    .33	[0.19-0.47] mm Hg decrease	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q21.33	12	89615182	ATP2B1	ATP2B1			490			rs2681472-A	rs2681472	0	2681472	intron	0	0.83	1E-9	8.999999999999998		    .50	[0.34-0.66] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.48	3E-14	13.52287874528034		    .48	[0.36-0.60] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q24.21	12	114914926	TBX3, TBX5	TBX3 - UBA52P7	6926	100128617		      230.76	      677.68	rs2384550-A	rs2384550	0	2384550	Intergenic	1	0.35	4E-8	7.397940008672037		    .35	[0.23-0.47] mm Hg decrease	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	15q24.1	15	74833304	CSK, ULK3	CPLX3 - ULK3	594855	25989		        1.51	        2.81	rs6495122-A	rs6495122	0	6495122	Intergenic	1	0.42	2E-10	9.698970004336017		    .40	[0.28-0.52] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	8p23.1	8	10214110	MSRA	MSRA			4482			rs11775334-A	rs11775334	0	11775334	intron	0	0.32	4E-6	5.397940008672037		    .08	[0.04-0.12] increase in log odds	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	10p12.31	10	18419869	CACNB2	CACNB2			783			rs11014166-A	rs11014166	0	11014166	intron	0	0.66	6E-8	7.221848749616355		    .09	[0.05-0.13] increase in log odds	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	12q21.33	12	89615182	ATP2B1	ATP2B1			490			rs2681472-A	rs2681472	0	2681472	intron	0	0.83	2E-11	10.69897000433602		    .15	[0.11-0.19] increase in log odds	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	20q13.32	20	59183665	ZNF831, EDN3	ZNF831			128611			rs16982520-A	rs16982520	0	16982520	intron	0	0.88	2E-7	6.698970004336019		    .13	[0.09-0.17] decrease in log odds	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	1p36.22	1	10739520	CASZ1	CASZ1			54897			rs12046278-T	rs12046278	0	12046278	intron	0	0.64	5E-6	5.301029995663981		    .53	[0.29-0.77] mm Hg decrease	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	3q26.2	3	169383111	MDS1	MECOM			2122			rs448378-A	rs448378	0	448378	intron	0	0.52	1E-7	7		    .51	[0.31-0.71] mm Hg decrease	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	10p12.31	10	18419869	CACNB2	CACNB2			783			rs11014166-A	rs11014166	0	11014166	intron	0	0.66	7E-7	6.154901959985743		    .50	[0.30-0.70] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	10q24.32	10	102834750	CYP17A1	CYP17A1;LOC102724307			1586;102724307			rs1004467-A	rs1004467	0	1004467	intron;nearGene-3	0	0.90	1E-10	10		   1.05	[0.74-1.36] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	11p15.1	11	16880721	PLEKHA7	PLEKHA7			144100			rs381815-T	rs381815	0	381815	intron	0	0.26	2E-9	8.698970004336019		    .65	[0.43-0.87] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q21.33	12	89619312	ATP2B1	ATP2B1			490			rs2681492-T	rs2681492	0	2681492	intron	0	0.80	4E-11	10.39794000867204		    .85	[0.60-1.10] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430479	Levy D	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430479?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.48	5E-9	8.301029995663981		    .58	[0.38-0.78] mm Hg increase	Affymetrix & Illumina [2,533,153](imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	3q26.2	3	169448100	MDS1	MECOM			2122			rs1918974-T	rs1918974	0	1918974	intron	0	0.54	8E-8	7.096910013008055		    .27	[0.17-0.37] mm Hg decrease	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	4q21.21	4	80263187	FGF5, PRDM8, c4orf22	PRDM8 - FGF5	56978	2250		       58.86	        3.40	rs16998073-T	rs16998073	0	16998073	Intergenic	1	0.21	1E-21	21		    .50	[0.40-0.60] mm Hg increase	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	10q21.2	10	61764833	c10orf107, TMEM26, RTKN2, RHOBTB1, ARID5B	C10orf107			219621			rs1530440-T	rs1530440	0	1530440	intron	0	0.19	1E-9	8.999999999999998		    .39	[0.27-0.51] mm Hg decrease	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	12q24.12	12	111569952	ATXN2, SH2B3	ATXN2			6311			rs653178-T	rs653178	0	653178	intron	0	0.53	3E-18	17.52287874528034		    .46	[0.36-0.56] mm Hg decrease	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	15q24.1	15	74785026	CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, ARID3B	CSK			1445			rs1378942-C	rs1378942	0	1378942	intron	0	0.36	1E-23	23		    .43	[0.35-0.51] mm Hg increase	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	17q21.33	17	49363104	ZNF652, PHB	ZNF652;LOC102724596			22834;102724596			rs16948048-G	rs16948048	0	16948048	nearGene-5;intron	0	0.39	5E-9	8.301029995663981		    .31	[0.21-0.41] mm Hg increase	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Systolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	1p36.22	1	11802721	MTHFR, NPPA, CLCN6, NPPB, AGTRAP	MTHFR			4524			rs17367504-G	rs17367504	0	17367504	intron	0	0.14	2E-13	12.69897000433602		    .85	[0.63-1.07] mm Hg decrease	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Systolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	10q24.32	10	103086421	CYP17A1, AS3MT, CNNM2, NT5C2	CNNM2 - NT5C2	54805	22978		        7.83	        1.60	rs11191548-T	rs11191548	0	11191548	Intergenic	1	0.91	7E-24	23.15490195998574		   1.16	[0.92-1.40] mm Hg increase	Affymetrix & Illumina [2,497,993] (imputed)	N
05/19/2009	19430483	Newton-Cheh C	05/10/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19430483?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study identifies eight loci associated with blood pressure.	Systolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	17q21.31	17	45130754	PLCD3, ACBD4, HEXIM1, HEXIM2	ACBD4;PLCD3			79777;113026			rs12946454-T	rs12946454	0	12946454	nearGene-5;intron	0	0.28	1E-8	8		    .57	[0.37-0.77] mm Hg increase	Affymetrix & Illumina [2,497,993] (imputed)	N
05/21/2009	19430760	Rich SS	05/09/2009	Diabetologia	http://www.ncbi.nlm.nih.gov/pubmed/19430760?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association scan for acute insulin response to glucose in Hispanic-Americans: the Insulin Resistance Atherosclerosis Family Study (IRAS FS).	Insulin resistance/response	229 hispanic individuals from 34 families	961 hispanic family members	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [309,200]	N
05/20/2009	19426955	Himes BE	05/07/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19426955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene.	Asthma	359 European ancestry cases, 846 European ancestry controls	2,981 European ancestry cases, 12,358 European ancestry controls, 769 European ancestry and hispanic cases, 1,007 European ancestry and hispanic controls, 592 Hispanic cases with their 1,184 Hispanic parental controls, 2,258 African American cases, 3,006 African American controls	5q12.1	5	60073967	PDE4D	PDE4D			5144			rs1588265-C	rs1588265	0	1588265	intron	0	0.29	3E-8	7.522878745280337		   1.18	[1.08-1.30] 	Illumina [518,230]	N
05/21/2009	19421330	Yang HC	05/07/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19421330	Genome-wide association study of young-onset hypertension in the Han Chinese population of Taiwan.	Hypertension (young onset)	175 Han Chinese ancestry cases, 175 Han Chinese ancestry controls	833 Han Chinese ancestry cases, 833 Han Chinese ancestry controls	2p22.3[rs9308945]; 2p22.3[rs6711736]			LOC344371, MYADML, FAM98A, RASGRP3	 - 						4-SNP-haplotype	rs9308945,rs6711736,rs6729869,rs10495809					NR	3E-10			NR	NR	Affymetrix [91,713]	N
05/19/2009	19419973	Sanna S	05/06/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19419973?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in the SLCO1B3 locus are associated with bilirubin levels and unconjugated hyperbilirubinemia.	Bilirubin levels	4,300 Sardinian individuals	1,860 Sardinian individuals, 832 Old Order Amish individuals	12p12.2	12	20921188	SLCO1B3	SLCO1B3 - SLCO1B7	28234	338821		        4.28	       94.51	rs2117032-C	rs2117032	0	2117032	Intergenic	1	0.47	3E-14	13.52287874528034		    .13	[0.08-0.18] s.d. increase	Affymetrix [362,129]	N
05/19/2009	19419973	Sanna S	05/06/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19419973?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in the SLCO1B3 locus are associated with bilirubin levels and unconjugated hyperbilirubinemia.	Bilirubin levels	4,300 Sardinian individuals	1,860 Sardinian individuals, 832 Old Order Amish individuals	2q37.1	2	233759924	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs887829-T	rs887829	0	887829	intron;intron;intron;intron;intron;intron;intron;nearGene-5;intron	0	0.30	1E-69	68.99999999999999		    .57	[0.50-0.63] s.d. decrease	Affymetrix [362,129]	N
05/19/2009	19419973	Sanna S	05/06/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19419973?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in the SLCO1B3 locus are associated with bilirubin levels and unconjugated hyperbilirubinemia.	Bilirubin levels	4,300 Sardinian individuals	1,860 Sardinian individuals, 832 Old Order Amish individuals	Xq28	23	154326058	G6PD	TKTL1			8277			rs766420-G	rs766420	0	766420	intron	0	0.18	9E-9	8.045757490560675		    .18	[0.12-0.24] s.d. decrease	Affymetrix [362,129]	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	1p32.1	1	60629886	NF1A	PGBD4P8 - NFIA	100421185	4774		      531.91	      447.39	rs472913-C	rs472913	0	472913	Intergenic	1	0.50	2E-7	6.698970004336019		   1.18	[1.11-1.25] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	2p12	2	79312862	CTNNA2	REG3A - CTNNA2	5068	1496		      153.11	      200.07	rs13409348-G	rs13409348	0	13409348	Intergenic	1	0.24	3E-6	5.522878745280337		   1.20	[1.11-1.29] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	2q11.2	2	98849039	Intergenic	KIAA1211L			343990			rs6733011-G	rs6733011	0	6733011	intron	0	0.46	3E-6	5.522878745280337		   1.17	[1.10-1.25] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	3p21.1	3	52786995	ITIH1, NEK4	ITIH1			3697			rs1042779-A	rs1042779	0	1042779	missense	0	0.63	2E-7	6.698970004336019		   1.19	[1.11-1.27] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	3q26.1	3	164044176	NR	RNU7-82P - MIR1263	100151679	100302148		      573.91	      127.30	rs7427021-G	rs7427021	0	7427021	Intergenic	1	0.56	5E-6	5.301029995663981		   1.16	[1.09-1.24] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	4q12	4	54616651	KIT	PDGFRA - KIT	5156	3815		      318.41	       41.28	rs2537859-T	rs2537859	0	2537859	Intergenic	1	0.60	4E-6	5.397940008672037		   1.16	[1.09-1.24] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	5q15	5	94818883	MCTP1	MCTP1			79772			rs17418283-C	rs17418283	0	17418283	intron	0	0.28	1E-7	7		   1.21	[1.13-1.30] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	8p12	8	34269430	NR	CYCSP3 - RPL10AP3	349198	137107		      299.55	       53.53	rs6990255-T	rs6990255	0	6990255	Intergenic	1	0.95	6E-6	5.221848749616356		   1.33	[1.18-1.51] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	9q34.13	9	132969648	NR	RPL39P24 - GFI1B	100271396	8328		        6.88	        8.76	rs2905072-A	rs2905072	0	2905072	Intergenic	1	0.77	6E-6	5.221848749616356		   1.21	[1.11-1.32] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	11q13.2	11	66567837	NR	CTSF			8722			rs2242663-T	rs2242663	0	2242663	intron	0	0.25	1E-6	5.999999999999999		   1.20	[1.11-1.29] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	15q23	15	70188275	NR	MIR629 - UACA	693214	55075		      108.81	      466.28	rs6494849-A	rs6494849	0	6494849	Intergenic	1	0.12	7E-6	5.154901959985742		   1.23	[1.13-1.35] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	17q21.33	17	49486650	NR	EIF4EP2 - NGFR	100131693	4804		       61.72	        8.64	rs1035050-T	rs1035050	0	1035050	Intergenic	1	0.40	9E-6	5.045757490560675		   1.17	[1.09-1.25] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/14/2009	19416921	Scott LJ	05/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19416921?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	19p13.3	19	1811604	NR	ATP8B3			148229			rs7250872-T	rs7250872	0	7250872	missense	0	0.69	2E-6	5.698970004336018		   1.21	[1.12-1.31] 	Affymetrix and Illumina [2,366,197] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	2q37.1	2	233763993	UGT1A1	UGT1A10;UGT1A8;UGT1A7;UGT1A6;UGT1A5;UGT1A9;UGT1A4;UGT1A1;UGT1A3			54575;54576;54577;54578;54579;54600;54657;54658;54659			rs6742078-T	rs6742078	0	6742078	intron;intron;intron;intron;intron;intron;intron;intron;intron	0	0.32	5E-324	323.301029995664		    .23	[0.21-0.25] umol/l increase in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	11p15.4	11	2915722	SLC22A18	SLC22A18			5002			rs16928809-A	rs16928809	0	16928809	intron	0	0.09	1E-7	7		    .06	[0.04-0.08] umol/l increase in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	2p11.2	2	88016274	KRCC1	RGPD2 - KRCC1	729857	51315		      190.46	       10.93	rs12714207-T	rs12714207	0	12714207	Intergenic	1	0.32	5E-7	6.30102999566398		    .03	[0.01-0.05] umol/l decrease in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	6p22.2	6	26116754	HIST1H2BC	HIST1H1T - HIST1H2BC	3010	8347		        8.62	        6.71	rs12206204-T	rs12206204	0	12206204	Intergenic	1	0.02	8E-7	6.096910013008056		    .18	[0.10-0.26] umol/l increase in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	4q28.1	4	125072347	Intergenic	ANKRD50 - FAT4	57182	79633		      359.62	      243.50	rs1986655-A	rs1986655	0	1986655	Intergenic	1	0.17	2E-6	5.698970004336018		    .02	[0.00-0.04] umol/l decrease in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	7q21.11	7	80970041	SEMA3C	SEMA3C - HGF	10512	3082		       50.69	      730.13	rs4236644-A	rs4236644	0	4236644	Intergenic	1	0.26	2E-6	5.698970004336018		    .02	[0.00-0.04] umol/l decrease in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	13q34	13	111166485	ARHGEF7	ARHGEF7			8874			rs4773330-A	rs4773330	0	4773330	intron	0	0.12	8E-6	5.096910013008055		    .04	[0.02-0.06] umol/l decrease in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/12/2009	19414484	Johnson AD	05/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19414484?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	12p12.1	12	21178615	SLCO1B1,LST-3TM12,SLCO1A2	SLCO1B1			10599			rs4149056-C	rs4149056	0	4149056	missense	0	0.15	7E-13	12.15490195998574		    .05	[0.03-0.07] umol/l increase in log(tbil)	Affymetrix & Illumina [2,555,103] (imputed)	N
05/07/2009	19412175	Capasso M	05/03/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19412175?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variations in BARD1 influence susceptibility to high-risk neuroblastoma.	Neuroblastoma (high-risk)	397 European ancestry cases, 2,043 European ancestry controls	371 European ancestry cases, 2,119 European ancestry controls	2q35	2	214807822	BARD1	BARD1			580			rs6435862-G	rs6435862	0	6435862	intron	0	0.29	9E-18	17.04575749056067		   1.68	[1.49-1.90] 	Illumina [462,866]	N
05/07/2009	19412176	Hallmayer J	05/03/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19412176	Narcolepsy is strongly associated with the T-cell receptor alpha locus.	Narcolepsy	807 European ancestry cases, 1,074 European ancestry controls	363 European ancestry cases, 355 European ancestry  controls, 133 African American cases, 144 African American controls, 561 Asian ancestry cases, 605 Asian ancestry controls	14q11.2	14	22533736	TRA-alpha, TRAJ10	TRA			6955			rs1154155-C	rs1154155	0	1154155		0	0.14	3E-22	21.52287874528033		   1.69	[1.52-1.88] 	Affymetrix [549,596]	N
05/07/2009	19401414	Takeuchi F	04/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19401414	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	6p22.3	6	20657333	CDKAL1	CDKAL1			54901			rs4712523-G	rs4712523	0	4712523	intron	0	0.41	7E-20	19.15490195998574		   1.27	[1.21-1.33] 	Illumina [482,625]	N
05/07/2009	19401414	Takeuchi F	04/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19401414	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	9p21.3	9	22132077	CDKN2A, CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      119.54	      314.76	rs2383208-A	rs2383208	0	2383208	Intergenic	1	0.55	2E-29	28.69897000433602		   1.34	[1.27-1.41] 	Illumina [482,625]	N
05/07/2009	19401414	Takeuchi F	04/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19401414	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	11p15.4	11	2818521	KCNQ1	KCNQ1			3784			rs2237892-C	rs2237892	0	2237892	intron	0	0.59	1E-26	26		   1.33	[1.27-1.41] 	Illumina [482,625]	N
05/07/2009	19401414	Takeuchi F	04/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19401414	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	3q27.2	3	185793899	IGF2BP2	IGF2BP2			10644			rs4402960-T	rs4402960	0	4402960	intron	0	0.31	1E-6	5.999999999999999		   1.14	[1.08-1.21] 	Illumina [482,625]	N
05/07/2009	19401414	Takeuchi F	04/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19401414	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.57	2E-14	13.69897000433602		   1.22	[1.16-1.28] 	Illumina [482,625]	N
05/07/2009	19401414	Takeuchi F	04/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19401414	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	10q23.33	10	92703125	HHEX	HHEX - EXOC6	3087	54536		        7.47	      123.71	rs1111875-C	rs1111875	0	1111875	Intergenic	1	0.28	7E-12	11.15490195998574		   1.21	[1.15-1.28] 	Illumina [482,625]	N
05/07/2009	19401414	Takeuchi F	04/29/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19401414	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.04	8E-12	11.09691001300806		   1.54	[1.36-1.74] 	Illumina [482,625]	N
05/11/2009	19404256	Wang K	04/28/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19404256?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common genetic variants on 5p14.1 associate with autism spectrum disorders.	Autism	3,101 European ancestry individuals from 780 families, 1,204 European ancestry cases, 6,491 European ancestry controls	1,390 European ancestry individuals from 447 families, 108 European ancestry cases, 540 European ancestry controls	5p14.1	5	25967594	CDH10,CDH9	MSNP1 - CDH9	4479	1007		       54.32	      913.01	rs4307059-T	rs4307059	0	4307059	Intergenic	1	0.61	2E-10	9.698970004336017		   1.19	[NR] 	Illumina [474,019]	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	16q12.2	16	53786615	FTO	FTO			79068			rs9939609-A	rs9939609	0	9939609	intron	0	0.13	2E-7	6.698970004336019	(BMI)	    .24	[0.14-0.32] kg/m2 increase	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	12q24.13	12	112207597	C12orf51	HECTD4			283450			rs2074356-T	rs2074356	0	2074356	intron	0	0.15	8E-12	11.09691001300806	(waist-hip ratio)	    .01	[0.004-0.008] decrease	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	12q21.33	12	89666809	ATP2B1	ATP2B1			490			rs17249754-A	rs17249754	0	17249754	intron	0	0.37	1E-7	7	(SBP)	   1.06	[0.67-1.45] mm Hg decrease	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	12q21.33	12	89666809	ATP2B1	ATP2B1			490			rs17249754-A	rs17249754	0	17249754	intron	0	0.37	3E-6	5.522878745280337	(DBP)	    .63	[0.37-0.89] mm Hg decrease	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	1q32.2	1	207851475	CD46, LOC148696	MIR29B2 - CD34	407025	947		       48.95	       35.06	rs12731740-T	rs12731740	0	12731740	Intergenic	1	0.10	3E-9	8.522878745280337	(pulse rate)	   1.09	[0.72-1.44] beats per minute increase	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	6q22.31	6	121837124	LOC644502	RPL23AP48 - HMGB3P18	728567	644502		      156.67	       21.06	rs12110693-A	rs12110693	0	12110693	Intergenic	1	0.49	2E-9	8.698970004336019	(pulse rate)	    .66	[0.45-0.87] beats per minute increase	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	7q31.31	7	121393067	FAM3C	FAM3C			10447			rs7776725-C	rs7776725	0	7776725	intron	0	0.13	1E-11	11	(BD-RT)	NR	NR	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	7q31.31	7	121393067	FAM3C	FAM3C			10447			rs7776725-C	rs7776725	0	7776725	intron	0	0.13	2E-6	5.698970004336018	(BD-TT)	NR	NR	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	6p21.31	6	34270737	HMGA1	TRNAI25			100189401			rs6918981-G	rs6918981	0	6918981		0	0.21	3E-8	7.522878745280337		    .40	[0.26-0.54] cm increase	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	1p12	1	118325782	Intergenic	RNA5SP56 - PSMC1P12	100873294	644094		       61.29	      288.33	rs17038182-C	rs17038182	0	17038182	Intergenic	1	0.42	5E-7	6.30102999566398		    .30	[0.18-0.42] cm decrease	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	3q23	3	141424588	ZBTB38	ZBTB38			253461			rs10513137-A	rs10513137	0	10513137	intron	0	0.26	6E-12	11.22184874961635		    .46	[0.33-0.59] cm increase	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	8q12.1	8	56188232	PLAG1	PLAG1			5324			rs13273123-G	rs13273123	0	13273123	intron	0	0.07	1E-9	8.999999999999998		    .71	[0.48-0.94] cm decrease	Affymetrix [2,156,535] (imputed)	N
05/05/2009	19396169	Cho YS	04/26/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19396169	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	2p16.1	2	55884174	EFEMP1	EFEMP1			2202			rs3791675-G	rs3791675	0	3791675	intron	0	0.22	2E-9	8.698970004336019		    .42	[0.28-0.56] cm increase	Affymetrix [2,156,535] (imputed)	N
04/23/2009	19369658	Ikram MA	04/15/2009	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/19369658	Genomewide association studies of stroke.	Stroke	19,602 European ancestry individuals	3,004 African American individuals	12p13.33	12	674318	NINJ2	NINJ2 - WNK1	4815	65125		       10.73	       78.28	rs12425791-A	rs12425791	0	12425791	Intergenic	1	0.19	1E-9	8.999999999999998	(ischemic stroke)	   1.29	[1.19-1.41] 	Affymetrix & Illumina [2,194,468]	N
04/22/2009	19367585	Poduslo SE	04/14/2009	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/19367585?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome screen of successful aging without cognitive decline identifies LRP1B by haplotype analysis.	Aging	89 European ancestry and African American successfully aged individuals, 227 European ancestry Alzheimers cases	NA	2q22.1	2	140963573	LRP1B	LRP1B			53353			rs12474609-?	rs12474609	0	12474609	intron	0	NR	6E-9	8.221848749616356		NR	NR	Affymetrix [469,218]	N
05/05/2009	19359809	Hiura Y	04/10/2009	Circ J	http://www.ncbi.nlm.nih.gov/pubmed/19359809	Identification of genetic markers associated with high-density lipoprotein-cholesterol by genome-wide screening in a Japanese population: the Suita study.	HDL cholesterol	900 Japanese ancestry individuals	1,810 Japanese ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.20	3E-12	11.52287874528034		   6.20	 mg/dl increase	Illumina [368,274]	N
04/22/2009	19359265	Mangino M	04/08/2009	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/19359265?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study identifies a novel locus on chromosome 18q12.2 influencing white cell telomere length.	Telomere length	1,625 European ancestry women	1,165 European ancestry individuals	18q12.2	18	37634043	BRUNOL4, PIKC3C	CELF4 - MIR4318	56853	100422857		       68.01	       23.09	rs2162440-G	rs2162440	0	2162440	Intergenic	1	NR	3E-6	5.522878745280337		 106.00	[62.88-149.12] base pairs shorter	Illumina [~314,075]	N
04/14/2009	19349984	Esparza-Gordillo J	04/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19349984?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A common variant on chromosome 11q13 is associated with atopic dermatitis.	Atopic dermatitis	939 European ancestry cases, 975 European ancestry controls, 1,097 European ancestry individuals from 270 families	2,637 European ancestry cases, 3,957 European ancestry controls	11q13.5	11	76590272	C11orf30	C11orf30 - LRRC32	56946	2615		       37.38	       67.25	rs7927894-A	rs7927894	0	7927894	Intergenic	1	0.36	8E-10	9.096910013008054		   1.22	[1.15-1.30] 	Affymetrix [342,303]	N
04/16/2009	19349983	Kamatani Y	04/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19349983	A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians.	Hepatitis B	179 Japanese ancestry cases, 934 Japanese ancestry controls	1,599 Japanese ancestry cases, 2,821 Japanese ancestry controls, 308 Thai ancestry cases, 546 Thai ancestry controls	6p21.32	6	33087084	HLA-DPB1	HLA-DPB1			3115			rs9277535-G	rs9277535	0	9277535	UTR-3	0	NR	6E-39	38.22184874961635		   1.75	[1.61-1.92] 	Illumina [499,544]	N
05/11/2009	19403135	Yamada Y	04/05/2009	Atherosclerosis	http://www.ncbi.nlm.nih.gov/pubmed/19403135?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Identification of CELSR1 as a susceptibility gene for ischemic stroke in Japanese individuals by a genome-wide association study.	Stroke (ischemic)	131 Japanese ancestry cases, 135 Japanese ancestry controls	776 Japanese ancestry cases, 5,205 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~520,000]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	1p36.11	1	26194649	CATSPER4	CATSPER4			378807			rs11809207-?	rs11809207	0	11809207	intron	0	0.23	6E-8	7.221848749616355		    .07	[0.04-0.10] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	3q23	3	141383991	ZBTB38	ZBTB38			253461			rs6763931-?	rs6763931	0	6763931	intron	0	0.35	3E-12	11.52287874528034		    .07	[0.05-0.09] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	4p15.31	4	18016107	LCORL	LCORL			254251			rs6830062-?	rs6830062	0	6830062	intron	0	0.23	5E-9	8.301029995663981		    .10	[0.07-0.13] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	4q21.21	4	81228677	PRKG2	PRKG2 - RASGEF1B	5593	153020		       13.56	      197.72	rs710841-?	rs710841	0	710841	Intergenic	1	0.12	2E-8	7.698970004336018		    .07	[0.04-0.10] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	5p13.3	5	32888712	NPR3	NPR3 - RPS8P8	4883	728553		       96.99	      273.44	rs10472828-?	rs10472828	0	10472828	Intergenic	1	0.26	3E-7	6.522878745280337		    .06	[0.04-0.08] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p22.2	6	26233159	HIST1H1D	HIST1H2APS3			387323			rs10946808-?	rs10946808	0	10946808		0	0.43	6E-12	11.22184874961635		    .07	[0.04-0.10] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.33	6	31386783	HLA-B	TRNAI25			100189401			rs13437082-?	rs13437082	0	13437082		0	0.13	5E-8	7.30102999566398		    .07	[0.04-0.10] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6p21.31	6	34227234	HMGA1,C6orf106	TRNAI25			100189401			rs1776897-?	rs1776897	0	1776897		0	0.49	8E-11	10.09691001300805		    .12	[0.08-0.16] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	6q24.1	6	142358435	GPR126	GPR126			57211			rs6570507-?	rs6570507	0	6570507	intron	0	0.42	4E-11	10.39794000867204		    .08	[0.06-0.10] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	7p22.2	7	2830351	GNA12	GNA12			2768			rs1182188-?	rs1182188	0	1182188	intron	0	0.27	3E-9	8.522878745280337		    .07	[0.04-0.10] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	7p15.1	7	28145472	JAZF1	JAZF1			221895			rs849141-?	rs849141	0	849141	intron	0	0.23	3E-11	10.52287874528034		    .08	[0.06-0.10] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	7q21.2	7	92635096	CDK6	CDK6			1021			rs2282978-?	rs2282978	0	2282978	intron	0	0.08	1E-8	8		    .06	[0.04-0.08] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	12q14.3	12	65965972	HMGA2	HMGA2			8091			rs8756-?	rs8756	0	8756	UTR-3	0	0.17	5E-14	13.30102999566398		    .08	[0.06-0.10] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	13q14.3	13	50542765	DLEU7	RPL34P26 - DLEU7	100130718	220107		      181.00	      169.86	rs3118914-?	rs3118914	0	3118914	Intergenic	1	0.39	4E-10	9.397940008672037		    .08	[0.05-0.11] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	14q24.3	14	75159339	TMED10	TMED10			10972			rs910316-?	rs910316	0	910316	intron	0	0.15	1E-7	7		    .05	[0.03-0.07] s.d. increase	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	15q25.2	15	83913372	ADAMTSL3	ADAMTSL3			57188			rs4842838-?	rs4842838	0	4842838	missense	0	0.32	3E-8	7.522878745280337		    .06	[0.04-0.07] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	20q11.22	20	35387378	UQCC	UQCC1			55245			rs6088813-?	rs6088813	0	6088813	intron	0	0.11	1E-13	13		    .09	[0.07-0.11] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	4q31.21	4	144653692	HHIP	HHIP			64399			rs1812175-?	rs1812175	0	1812175	intron	0	0.49	4E-6	5.397940008672037		    .06	[0.03-0.09] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	8q12.1	8	56266461	PLAG1	CHCHD7 - SDR16C5	79145	195814		       47.84	       33.55	rs7815788-?	rs7815788	0	7815788	Intergenic	1	0.39	5E-6	5.301029995663981		    .07	[0.04-0.10] s.d. decrease	Illumina [229,216]	N
04/22/2009	19343178	Soranzo N	04/03/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19343178?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	9p13.3	9	34071543	WDR40A	RNU7-36P - DCAF12	100147823	25853		       53.22	       14.84	rs7871764-?	rs7871764	0	7871764	Intergenic	1	0.44	2E-6	5.698970004336018		    .06	[0.03-0.09] s.d. increase	Illumina [229,216]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	5p13.2	5	33955568	MATP	SLC45A2			51151			rs35391-T	rs35391	0	35391	intron	0	NR	3E-10	9.522878745280336		    .44	[0.30-0.58] decrease in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	5q32	5	149831285	PPARGC1B	PPARGC1B			133522			rs32579-A	rs32579	0	32579	intron	0	NR	4E-6	5.397940008672037		    .11	[0.07-0.15] decrease in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	6p25.3	6	475489	EXOC2	IRF4 - EXOC2	3662	55770		       64.05	        9.65	rs12210050-T	rs12210050	0	12210050	Intergenic	1	NR	5E-14	13.30102999566398		    .22	[0.16-0.28] increase in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	11q14.3	11	88824823	GRM5	GRM5			2915			rs10831496-G	rs10831496	0	10831496	intron	0	NR	5E-9	8.301029995663981		    .14	[0.10-0.18] decrease in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	11q14.3	11	89277878	TYR	TYR			7299			rs1393350-A	rs1393350	0	1393350	intron	0	NR	2E-13	12.69897000433602		    .19	[0.13-0.25] increase in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	12q13.13	12	53765493	LOC440100	CISTR - HOXC13-AS	102216268	100874366		        8.46	      169.84	rs7969151-A	rs7969151	0	7969151	Intergenic	1	0.21	2E-6	5.698970004336018		    .13	[0.07-0.19] increase in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	14q32.2	14	96637470	Intergenic	PAPOLA - VRK1	10914	7443		       70.35	      159.88	rs17094273-A	rs17094273	0	17094273	Intergenic	1	NR	9E-8	7.045757490560674		    .20	[0.12-0.28] increase in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	16q24.3	16	90018153	MC1R	GAS8;DBNDD1			2622;79007			rs11648785-T	rs11648785	0	11648785	nearGene-5;intron	0	NR	3E-9	8.522878745280337		    .14	[0.10-0.18] decrease in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	21q22.3	21	41807559	PRDM15	PRDM15			63977			rs7279297-G	rs7279297	0	7279297	intron	0	NR	3E-6	5.522878745280337		    .12	[0.06-0.18] decrease in tanning ability score	Illumina [528,173]	N
04/13/2009	19340012	Nan H	04/02/2009	J Invest Dermatol	http://www.ncbi.nlm.nih.gov/pubmed/19340012?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry women	870 European ancestry women	16q24.3	16	89600929	MC1R	CPNE7 - DPEP1	27132	1800		        3.68	       12.38	rs154659-C	rs154659	0	154659	Intergenic	1	NR	7E-8	7.154901959985742		    .14	[0.08-0.20] increase in tanning ability score	Illumina [528,173]	N
12/29/2009	20031577	Danik JS	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031577	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry women	NA	1q21.3	1	154454494	IL6R	IL6R			3570			rs8192284-C	rs8192284	1	2228145	missense	0	0.40	2E-11	10.69897000433602		   5.30	[NR] mg/dl decrease	Illumina [337,343]	N
12/29/2009	20031577	Danik JS	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031577	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry women	NA	2q34	2	210675783	CPS1	CPS1			1373			rs7422339-A	rs7422339	1	1047891	missense	0	0.31	9E-9	8.045757490560675		   4.84	[NR] mg/dl decrease	Illumina [337,343]	N
12/29/2009	20031577	Danik JS	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031577	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry women	NA	4q31.3	4	154567669	FGB, FGA, FGG	FGB			2244			rs6056-A	rs6056	0	6056	cds-synon	0	0.18	8E-39	38.09691001300806		  12.94	[NR] mg/dl increase	Illumina [337,343]	N
12/29/2009	20031577	Danik JS	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031577	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry women	NA	5q31.1	5	132408882	SLC22A5, SLC22A4, IRF1	C5orf56			441108			rs1016988-G	rs1016988	0	1016988	nearGene-5	0	0.20	1E-12	12		   6.84	[NR] mg/dl decrease	Illumina [337,343]	N
12/29/2009	20031577	Danik JS	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031577	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry women	NA	17q25.1	17	74703694	CD300LF, SLC9A3R1, NAT9	CD300LF;RAB37			146722;326624			rs10512597-A	rs10512597	0	10512597	intron;intron	0	0.18	8E-11	10.09691001300805		   6.45	[NR] mg/dl decrease	Illumina [337,343]	N
12/29/2009	20031577	Danik JS	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031577	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry women	NA	5q31.1	5	132335969	SLC22A5, SLC22A4, IRF1	SLC22A4;LOC553103			6583;553103			rs10479002-C	rs10479002	1	12777	cds-synon;intron	0	0.04	1E-6	5.999999999999999		   9.51	[NR] mg/dl increase	Illumina [337,343]	N
12/29/2009	20031576	Dehghan A	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031576	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry women	4q31.3	4	154561591	FGB	FGB			2244			rs1800789-A	rs1800789	0	1800789	nearGene-5	0	0.22	2E-30	29.69897000433602		    .09	[0.07-0.11] g/L increase	Affymetrix & Illumina [~2,661,766] (imputed)	N
12/29/2009	20031576	Dehghan A	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031576	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry women	5q31.1	5	132466034	IRF1	C5orf56			441108			rs2522056-A	rs2522056	0	2522056	intron	0	0.21	1E-15	15		    .06	[0.04-0.08] g/L decrease	Affymetrix & Illumina [~2,661,766] (imputed)	N
12/29/2009	20031576	Dehghan A	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031576	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry women	3q22.3	3	136232079	PCCB	RPL31P23 - PCCB	391581	5096		       26.15	       18.25	rs511154-A	rs511154	0	511154	Intergenic	1	0.22	6E-10	9.221848749616356		    .05	[0.03-0.06] g/L increase	Affymetrix & Illumina [~2,661,766] (imputed)	N
12/29/2009	20031576	Dehghan A	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031576	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry women	1q44	1	247436999	NLRP3	NLRP3			114548			rs1539019-A	rs1539019	0	1539019	intron	0	0.37	1E-8	8		    .04	[0.03-0.05] g/L decrease	Affymetrix & Illumina [~2,661,766] (imputed)	N
12/29/2009	20031578	Pare G	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031578	Novel associations of CPS1, MUT, NOX4, and DPEP1 with plasma homocysteine in a healthy population: a genome-wide evaluation of 13 974 participants in the Women's Genome Health Study.	Homocysteine levels	13,974 European ancestry females	840 European ancestry females	1p36.22	1	11796321	MTHFR	MTHFR			4524			rs1801133-A	rs1801133	0	1801133	missense	0	0.33	8E-35	34.09691001300806	(WGHS)	    .05	[NR] unit increase in log(homocysteine)	Illumina [336,469]	N
12/29/2009	20031578	Pare G	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031578	Novel associations of CPS1, MUT, NOX4, and DPEP1 with plasma homocysteine in a healthy population: a genome-wide evaluation of 13 974 participants in the Women's Genome Health Study.	Homocysteine levels	13,974 European ancestry females	840 European ancestry females	21q22.3	21	43058387	CBS	CBS			875			rs6586282-?	rs6586282	0	6586282	intron	0	0.18	3E-10	9.522878745280336	(WGHS)	    .03	[NR] unit decrease in log(homocysteine)	Illumina [336,469]	N
12/29/2009	20031579	Tarasov KV	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031579	COL4A1 is associated with arterial stiffness by genome-wide association scan.	Arterial stiffness	4,221 Sardinian individuals	1,828 Sardinian individuals, 813 Old Order Amish individuals	13q34	13	110166251	COL4A1	COL4A1			1282			rs3742207-C	rs3742207	0	3742207	missense	0	0.44	5E-8	7.30102999566398		  21.00	[11.79-30.21] cm/s increase	Affymetrix [362,129] (imputed)	N
12/29/2009	20031582	Thompson JF	04/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031582?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1	Comprehensive whole-genome and candidate gene analysis for response to statin therapy in the Treating to New Targets (TNT) cohort.	Response to statin therapy	1,984 European ancestry individuals	3,761 European ancestry individuals, 1,248 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Perlegen [291,998]	N
04/03/2009	19330030	Thomas G	03/29/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19330030?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	10q26.13	10	121577821	FGFR2	FGFR2			2263			rs2981579-T	rs2981579	0	2981579	intron	0	0.41	2E-10	9.698970004336017		   1.17	[1.07-1.27] 	Illumina [528,173]	N
04/03/2009	19330030	Thomas G	03/29/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19330030?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	16q12.1	16	52552429	TOX3	CASC16			643714			rs3803662-T	rs3803662	0	3803662	ncRNA	0	0.27	1E-9	8.999999999999998		   1.16	[1.07-1.27] 	Illumina [528,173]	N
04/03/2009	19330030	Thomas G	03/29/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19330030?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	5q11.2	5	56727256	MAP3K1	RPL26P19 - MAP3K1	441073	4214		      222.14	       87.82	rs16886165-G	rs16886165	0	16886165	Intergenic	1	0.15	5E-7	6.30102999566398		   1.23	[1.12-1.35] 	Illumina [528,173]	N
04/03/2009	19330030	Thomas G	03/29/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19330030?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	2q35	2	217041109	Intergenic	TNP1 - DIRC3	7141	729582		      181.05	      242.91	rs13387042-A	rs13387042	0	13387042	Intergenic	1	0.51	2E-8	7.698970004336018		   1.25	[1.15-1.37] 	Illumina [528,173]	N
04/03/2009	19330030	Thomas G	03/29/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19330030?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	1p11.2	1	121538815	Intergenic	EMBP1			647121			rs11249433-C	rs11249433	0	11249433	intron	0	0.39	7E-10	9.154901959985741		   1.16	[1.09-1.24] 	Illumina [528,173]	N
04/03/2009	19330030	Thomas G	03/29/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19330030?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	14q24.1	14	68567965	RAD51L1	RAD51B			5890			rs999737-C	rs999737	0	999737	intron	0	0.76	2E-7	6.698970004336019		   1.06	[1.01-1.14] 	Illumina [528,173]	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1q23.3	1	162064100	NOS1AP	OLFML2B - NOS1AP	25903	9722		       39.72	        5.69	rs12143842-T	rs12143842	0	12143842	Intergenic	1	0.26	2E-78	77.698970004336		   3.15	[2.81-3.49] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1q23.3	1	162163327	NOS1AP	NOS1AP			9722			rs12029454-A	rs12029454	0	12029454	intron	0	0.15	3E-45	44.52287874528033		   2.98	[2.63-3.32] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1q23.3	1	162143120	NOS1AP	NOS1AP			9722			rs16857031-G	rs16857031	0	16857031	intron	0	0.14	1E-34	34		   2.63	[2.28-2.97] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	11p15.5	11	2463573	KCNQ1	KCNQ1			3784			rs2074238-T	rs2074238	0	2074238	intron	0	0.06	3E-17	16.52287874528034		   7.88	[6.16-9.59] msec decrease	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	16q21	16	58533334	CNOT1,GINS3, NDRG4, SLC38A7, GOT2	CNOT1			23019			rs37062-G	rs37062	0	37062	intron	0	0.24	3E-25	24.52287874528033		   1.75	[1.41-2.09] msec decrease	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	6q22.31	6	118672469	c6orf204,SLC35F1, PLN, ASF1A	CEP85L			387119			rs11756438-A	rs11756438	0	11756438	intron	0	0.47	5E-22	21.30102999566398		   1.40	[1.06-1.74] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	11p15.5	11	2481089	KCNQ1	KCNQ1			3784			rs12576239-T	rs12576239	0	12576239	intron	0	0.13	1E-15	15		   1.75	[1.41-2.09] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1p36.31	1	6219310	RNF207,NPHP4, CHDS, ACOT7, PLEKHG5, KLH21	RNF207			388591			rs846111-C	rs846111	0	846111	missense	0	0.28	1E-16	16		   1.75	[1.41-2.09] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	7q36.1	7	150940775	KCNH2	AOC1 - KCNH2	26	3757		       79.48	        4.18	rs4725982-T	rs4725982	0	4725982	Intergenic	1	0.22	5E-16	15.30102999566398		   1.58	[1.23-1.92] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	16p13.13	16	11597897	LITAF,CLEC16A, SNN, ZC3H7A, TNFRSF17	LITAF - SNN	9516	8303		       10.43	       70.54	rs8049607-T	rs8049607	0	8049607	Intergenic	1	0.49	5E-15	14.30102999566398		   1.23	[0.88-1.57] msec increase	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	3p22.2	3	38551902	SCN5A	SCN5A			6331			rs12053903-C	rs12053903	0	12053903	intron	0	0.34	1E-14	14		   1.23	[0.88-1.57] msec decrease	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	17q12	17	34997363	LIG3,RFFL	LIG3			3980			rs2074518-T	rs2074518	0	2074518	intron	0	0.46	6E-12	11.22184874961635		   1.05	[0.71-1.39] msec decrease	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
03/31/2009	19305408	Newton-Cheh C	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305408?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	7q36.1	7	150925074	KCNH2	AOC1 - KCNH2	26	3757		       63.78	       19.88	rs2968864-C	rs2968864	0	2968864	Intergenic	1	0.25	8E-16	15.09691001300805		   1.40	[1.06-1.74] msec decrease	Affymetrix and Illumina [up to 2,543,686] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1p36.31	1	6219310	RNF207	RNF207			388591			rs846111-C	rs846111	0	846111	missense	0	0.29	4E-16	15.39794000867204		   1.49	[1.00-1.98] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1q23.3	1	162064100	NOS1AP	OLFML2B - NOS1AP	25903	9722		       39.72	        5.69	rs12143842-T	rs12143842	0	12143842	Intergenic	1	0.24	2E-78	77.698970004336		   2.88	[2.43-3.33] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1q24.2	1	169130245	ATP1B1	ATP1B1			481			rs10919071-A	rs10919071	0	10919071	intron	0	0.87	1E-15	15		   2.05	[1.48-2.62] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	3p22.2	3	38547672	SCN5A	SCN5A			6331			rs11129795-A	rs11129795	0	11129795	nearGene-3	0	0.23	5E-14	13.30102999566398		   1.27	[0.82-1.72] ms decrease	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	6q22.31	6	118359211	PLN	RPL29P4 - CEP85L	387101	387119		      359.63	      101.56	rs11970286-T	rs11970286	0	11970286	Intergenic	1	0.44	2E-24	23.69897000433602		   1.64	[1.25-2.03] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	7q36.1	7	150926049	KCNH2	AOC1 - KCNH2	26	3757		       64.76	       18.91	rs2968863-T	rs2968863	0	2968863	Intergenic	1	0.29	2E-15	14.69897000433602		   1.35	[0.90-1.80] ms decrease	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	11p15.5	11	2468112	KCNQ1	KCNQ1			3784			rs12296050-T	rs12296050	0	12296050	intron	0	0.20	3E-17	16.52287874528034		   1.44	[0.95-1.93] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	16p13.13	16	11597897	LITAF	LITAF - SNN	9516	8303		       10.43	       70.54	rs8049607-T	rs8049607	0	8049607	Intergenic	1	0.46	6E-15	14.22184874961635		   1.25	[0.81-1.69] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	17q24.3	17	70498851	KCNJ2	CALM2P1 - CASC17	100128390	101928165		      256.47	      598.92	rs17779747-T	rs17779747	0	17779747	Intergenic	1	0.35	6E-12	11.22184874961635		   1.02	[0.53-1.51] ms decrease	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	16q21	16	58588274	NDRG4	CNOT1			23019			rs7188697-A	rs7188697	0	7188697	intron	0	0.74	7E-25	24.15490195998574		   1.66	[1.20-2.12] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1q23.3	1	162240820	NOS1AP	NOS1AP			9722			rs4657178-T	rs4657178	0	4657178	intron	0	0.33	7E-33	32.15490195998574		   2.19	[1.76-2.62] ms increase	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19305409	Pfeufer A	03/22/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19305409?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	6q22.31	6	118332041	PLN	RPL29P4 - CEP85L	387101	387119		      332.46	      128.73	rs12210810-C	rs12210810	0	12210810	Intergenic	1	0.06	2E-17	16.69897000433602		   3.13	[2.29-3.97] ms decrease	Affymetrix and Illumina [unsure] (imputed)	N
04/02/2009	19304780	Org E	03/20/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19304780?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan identifies CDH13 as a novel susceptibility locus contributing to blood pressure determination in two European populations.	Hypertension	364 European ancestry cases, 590 European ancestry controls	1,043 European ancestry cases, 1,769 European ancestry controls	16q23.3	16	82609046	CDH13	MPHOSPH6 - CDH13	10200	1012		      438.82	       17.75	rs11646213-T	rs11646213	0	11646213	Intergenic	1	0.60	8E-6	5.096910013008055		   1.28	[1.15-1.43] 	Affymetrix [395,912]	N
03/31/2009	19300482	Pillai SG	03/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19300482?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci.	Chronic obstructive pulmonary disease	823 cases, 810 controls	1,891 European ancestry individuals from 606 families, 389 European ancestry cases, 472 European ancestry controls, 949 individuals from 127 families	15q25.1	15	78513681	CHRNA3,CHRNA4,CHRNA5, LOC123688	HYKK			123688			rs8034191-C	rs8034191	0	8034191	intron	0	0.33	1E-10	10		   1.40	[1.18-1.67] 	Illumina [493,609]	N
03/31/2009	19300482	Pillai SG	03/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19300482?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci.	Chronic obstructive pulmonary disease	823 cases, 810 controls	1,891 European ancestry individuals from 606 families, 389 European ancestry cases, 472 European ancestry controls, 949 individuals from 127 families	4q31.21	4	144559628	HHIP	GYPA - KRT18P51	2993	391703		      418.88	       12.61	rs1828591-?	rs1828591	0	1828591	Intergenic	1	NR	1E-7	7		   1.38	[1.17-1.63] 	Illumina [493,609]	N
03/30/2009	19300499	Takeuchi F	03/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19300499?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	16p11.2	16	31096368	VKORC1	VKORC1			79001			rs9923231-T	rs9923231	0	9923231	nearGene-5	0	0.40	3E-181	180.5228787452803		    .97	[0.91-1.02] mg/week decrease	Illumina [325,997]	N
03/30/2009	19300499	Takeuchi F	03/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19300499?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	10q23.33	10	94981296	CYP2C9	CYP2C9			1559			rs1057910-?	rs1057910	0	1057910	missense	0	0.07	3E-79	78.52287874528032		   1.11	[1.00-1.22] mg/week decrease	Illumina [325,997]	N
03/30/2009	19300499	Takeuchi F	03/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19300499?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	10q23.33	10	94942290	CYP2C9	CYP2C9			1559			rs1799853-?	rs1799853	0	1799853	missense	0	0.11	1E-31	31		    .54	[0.45-0.63] mg/week decrease	Illumina [325,997]	N
03/30/2009	19300499	Takeuchi F	03/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19300499?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	19p13.12	19	15879621	CYP4F2	CYP4F2			8529			rs2108622-?	rs2108622	0	2108622	missense	0	0.24	3E-10	9.522878745280336		    .21	[0.14-0.27] mg/week increase	Illumina [325,997]	N
03/31/2009	19300500	Wilk JB	03/20/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19300500?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of pulmonary function measures in the Framingham Heart Study.	Pulmonary function	7,691 European ancestry individuals	835 European ancestry individuals	4q31.21	4	144539078	HHIP	GYPA - KRT18P51	2993	391703		      398.33	       33.16	rs13147758-G	rs13147758	0	13147758	Intergenic	1	0.39	8E-11	10.09691001300805		    .10	[NR] % increase in FEV1/FVC ratio	Affymetrix [2,540,223] (imputed)	N
04/01/2009	19303062	Tanaka T	03/18/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19303062?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	1p36.12	1	21459575	ALPL	NBPF3			84224			rs4654748-C	rs4654748	0	4654748	intron	0	0.50	8E-18	17.09691001300806	(vitamin B6)	   1.45	[0.90-2.00] ng/ml decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
04/01/2009	19303062	Tanaka T	03/18/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19303062?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	19q13.33	19	48703728	FUT2	FUT2			2524			rs602662-A	rs602662	0	602662	missense	0	0.53	3E-20	19.52287874528034	(vitamin B12)	  49.77	[37.09-62.45] pg/ml increase	Affymetrix and Illumina [~2.5 million] (imputed)	N
04/01/2009	19303062	Tanaka T	03/18/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19303062?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	3p14.1	3	64092333	PRICKLE2	PRICKLE2-AS1			100652759			rs153734-T	rs153734	0	153734	intron	0	0.84	7E-6	5.154901959985742	(folate)	    .29	[0.13-0.45] ng/ml increase	Affymetrix and Illumina [~2.5 million] (imputed)	N
04/01/2009	19303062	Tanaka T	03/18/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19303062?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	10p13	10	17088694	CUBN	CUBN			8029			rs11254363-A	rs11254363	0	11254363	intron	0	0.70	1E-6	5.999999999999999	(vitamin B12)	  21.49	[7.71-35.27] pg/mL decrease	Affymetrix and Illumina [~2.5 million] (imputed)	N
04/01/2009	19303062	Tanaka T	03/18/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19303062?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	11q12.1	11	59866020	TCN1	TCN1			6947			rs526934-A	rs526934	0	526934	intron	0	0.67	2E-6	5.698970004336018	(vitamin B12)	  27.62	[11.65-43.59] pg/mL increase	Affymetrix and Illumina [~2.5 million] (imputed)	N
03/31/2009	19287384	Kilpivaara O	03/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19287384?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A germline JAK2 SNP is associated with predisposition to the development of JAK2(V617F)-positive myeloproliferative neoplasms.	Myeloproliferative neoplasms	324 European ancestry cases, 2,999 European ancestry controls	NA	9p24.1	9	5070831	JAK2	JAK2			3717			rs10974944-?	rs10974944	0	10974944	intron	0	NR	4E-20	19.39794000867203		   3.10	[2.40-4.00] 	Affymetrix [62,775]	N
03/31/2009	19287509	Cui J	03/14/2009	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/19287509?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.	Anti-cyclic Citrullinated Peptide Antibody	531 European ancestry cases	849 European ancestry cases	6p21.32	6	32395438	HLA-DRA, BTNL2	BTNL2			56244			rs1980493-?	rs1980493	0	1980493	intron	0	0.13	5E-7	6.30102999566398		NR	NR	Affymetrix [97,248]	N
03/29/2009	19282985	Liu YZ	03/13/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19282985?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analyses identify SPOCK as a key novel gene underlying age at menarche.	Menarche (age at onset)	477 European ancestry women	854 European ancestry siblings, 762 European ancestry women, 1,387 Chinese ancestry women	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [379,319]	N
03/30/2009	19278955	Tregouet DA	03/10/2009	Blood	http://www.ncbi.nlm.nih.gov/pubmed/19278955?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common susceptibility alleles are unlikely to contribute as strongly as the FV and ABO loci to VTE risk: results from a GWAS approach.	Venous thromboembolism	419 European ancestry cases, 1,228 European ancestry controls	1,757 European ancestry cases, 1,480 European ancestry controls	9q34.2	9	133273813	ABO	ABO			28			rs505922-C	rs505922	0	505922	intron	0	0.35	4E-15	14.39794000867204		   1.81	[1.56-2.11] 	Illumina [291,872]	N
03/28/2009	19270707	Birnbaum S	03/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19270707	Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24.	Orofacial clefts	224 European ancestry cases, 383 European ancestry controls	246 cases, 954 controls	8q24.21	8	128933908	PVT1, GSDMC	LINC01263 - LINC00977	101927774	728724		      505.99	      282.56	rs987525-A	rs987525	0	987525	Intergenic	1	0.20	3E-24	23.52287874528033		   2.57	[2.02-3.26] 	Illumina [521,176]	N
03/28/2009	19270707	Birnbaum S	03/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19270707	Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24.	Orofacial clefts	224 European ancestry cases, 383 European ancestry controls	246 cases, 954 controls	1q32.2	1	209815925	IRF6	IRF6 - DIEXF	3664	27042		        9.75	       12.04	rs642961-A	rs642961	0	642961	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Illumina [521,176]	N
03/24/2009	19268274	Liu XG	03/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19268274?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association and replication studies identified TRHR as an important gene for lean body mass.	Body mass (lean)	973 European ancestry individuals	1,488 European ancestry individuals,  1,972 European ancestry individuals from 593 families, 2,955 Chinese ancestry individuals	8q23.1	8	109103447	TRHR	TRHR			7201			rs7832552-T	rs7832552	0	7832552	intron	0	0.32	4E-10	9.397940008672037		    .10	[0.04-0.16] kg increase	Affymetrix [379,319]	N
03/24/2009	19268276	Vink JM	03/04/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19268276?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of smoking initiation and current smoking.	Smoking behavior	3,497 European ancestry individuals	6,215 individuals, 1,648 twins	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Perlegen [427,037]	N
03/28/2009	19259986	Hattori E	03/02/2009	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/19259986?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Preliminary genome-wide association study of bipolar disorder in the Japanese population.	Bipolar disorder	107 Japanese ancestry cases, 107 Japanese ancestry controls	395 Japanese ancestry cases, 409 Japanese ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [88,671]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	3q13.12	3	107746970	BBX	BBX			56987			rs6437740-?	rs6437740	0	6437740	intron	0	0.24	2E-7	6.698970004336019	(CPD)	    .10	[NR] fewer cigarettes per day	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	1p35.2	1	30094749	Intergenic	PTPRU - MATN1	10076	4146		      767.94	      616.53	rs910696-?	rs910696	0	910696	Intergenic	1	0.31	3E-6	5.522878745280337	(CPD)	    .08	[NR] more cigarettes per day	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	19p12	19	19925367	ZNF505	ZNF93			81931			rs10411195-?	rs10411195	0	10411195	intron	0	0.03	6E-6	5.221848749616356	(CPD)	    .21	[NR] fewer cigarettes per day	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	Xq23	23	111912005	TRPC5	TRPC5			7224			rs7050529-?	rs7050529	0	7050529	intron	0	0.07	6E-6	5.221848749616356	(CPD)	    .06	[NR] fewer cigarettes per day	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	17p13.2	17	3883613	CAMKK1	CAMKK1			84254			rs758642-?	rs758642	0	758642	intron	0	0.34	7E-6	5.154901959985742	(CPD)	    .08	[NR] more cigarettes per day	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	18q11.2	18	23141009	CABLES1	CABLES1			91768			rs11082304-?	rs11082304	0	11082304	intron	0	0.49	6E-6	5.221848749616356	(SMKAGE)	    .03	[NR] years older	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	4q31.1	4	139501980	SET7	RAB33B - SETD7	83452	80854		       26.06	        4.06	rs17050782-?	rs17050782	0	17050782	Intergenic	1	0.21	8E-6	5.096910013008055	(SMKAGE)	    .03	[NR] years older	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	1p22.3	1	87147675	AK002179	LINC01140			339524			rs7553864-?	rs7553864	0	7553864	intron	0	0.39	3E-6	5.522878745280337	(SMKDU)	    .08	[NR] more years	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	13q33.1	13	103214754	Intergenic	SLC10A2 - ATP6V1G1P7	6555	100874514		      147.91	      229.27	rs912969-?	rs912969	0	912969	Intergenic	1	0.07	8E-6	5.096910013008055	(SMKDU)	    .14	[NR] fewer years	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	4q28.1	4	125510764	Intergenic	MIR2054 - NUPL1P1	100302267	100289295		        3.46	      170.74	rs950063-?	rs950063	0	950063	Intergenic	1	0.39	9E-6	5.045757490560675	(SMKDU)	    .08	[NR] fewer years	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	3q24	3	144621363	Intergenic	RNA5SP144 - LARP7P4	100873411	100421509		      434.34	      902.16	rs800082-?	rs800082	0	800082	Intergenic	1	0.42	3E-6	5.522878745280337	(PKYRS)	    .12	[NR] more pack years	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	12q21.2	12	77335605	Intergenic	NAV3			89795			rs1402279-?	rs1402279	0	1402279	intron	0	0.95	5E-6	5.301029995663981	(EVNV)	   1.51	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	5q14.3	5	91466931	LOC133789	ARRDC3-AS1 - RAB5CP2	100129716	133789		       46.22	        9.48	rs933688-?	rs933688	0	933688	Intergenic	1	0.17	6E-6	5.221848749616356	(EVNV)	   1.48	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	9p21.2	9	26789942	Intergenic	FAM71BP1 - CAAP1	100421478	79886		      851.51	       50.74	rs1889899-?	rs1889899	0	1889899	Intergenic	1	0.37	6E-6	5.221848749616356	(EVNV)	   1.26	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	9q31.1	9	101860586	Intergenic	MTND3P4 - ARL2BPP7	100873181	100131629		       66.85	      193.28	rs10989661-?	rs10989661	0	10989661	Intergenic	1	0.74	6E-6	5.221848749616356	(CIGSTAT)	   1.68	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	12q21.33	12	90683731	Intergenic	MRPL2P1 - LINC00615	347894	439916		      929.88	      234.29	rs1847461-?	rs1847461	0	1847461	Intergenic	1	0.94	8E-6	5.096910013008055	(CIGSTAT)	   1.80	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	16p13.3	16	7786295	Intergenic	RPS26P51 - TMEM114	100271576	283953		      659.66	      783.21	rs3112740-?	rs3112740	0	3112740	Intergenic	1	0.86	6E-6	5.221848749616356	(CPDBI)	   2.16	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	14q24.1	14	68941980	ACTN1	ACTN1			87			rs2268983-?	rs2268983	0	2268983	intron	0	0.51	7E-6	5.154901959985742	(CPDBI)	   1.52	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	Xp11.3	23	43747786	MAOA	MAOA - MAOB	4128	4129		         .96	       18.82	rs3027409-?	rs3027409	0	3027409	Intergenic	1	0.95	7E-6	5.154901959985742	(CPDBI)	   1.73	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	7p15.2	7	26517999	Intergenic	SNX10 - KIAA0087	29887	9808		      143.62	       15.12	rs886716-?	rs886716	0	886716	Intergenic	1	0.69	8E-6	5.096910013008055	(CPDBI)	   1.52	[NR] 	Illumina [~518,000]	N
04/01/2009	19247474	Caporaso N	02/27/2009	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/19247474?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	3q27.2	3	185904041	Intergenic	MIR548AQ - TRA2B	100847078	6434		      136.14	       10.53	rs6444087-?	rs6444087	0	6444087	Intergenic	1	0.26	9E-6	5.045757490560675	(EVNV)	   1.28	[NR] 	Illumina [~518,000]	N
03/18/2009	19252134	Pezzolesi MG	02/27/2009	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19252134?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan for diabetic nephropathy susceptibility genes in type 1 diabetes.	Type 2 diabetes nephropathy	820 European ancestry cases, 885 European ancestry controls	1,304 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [359,193]	N
03/18/2009	19242412	Gu Y	02/25/2009	Nature	http://www.ncbi.nlm.nih.gov/pubmed/19242412?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Identification of IFRD1 as a modifier gene for cystic fibrosis lung disease.	Cystic fibrosis severity	160 European ancestry severe lung disease patients, European ancestry 160 mild lung disease patients	485 European ancestry cases,91 controls, 2,194 individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [100,198] (pooled)	N
03/18/2009	19249006	Xiong DH	02/25/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19249006	Genome-wide association and follow-up replication studies identified ADAMTS18 and TGFBR3 as bone mass candidate genes in different ethnic groups.	Bone mineral density	1,000 European ancestry individuals	4,925 European ancestry individuals, 350 Chinese ancestry hip fracture cases, 350 Chinese ancestry hip fracture controls, 2,955 Chinese ancestry individuals, 908 West African ancestry men	16q23.1	16	77393872	ADAMTS18	ADAMTS18			170692			rs11864477-C	rs11864477	0	11864477	intron	0	0.12	2E-8	7.698970004336018	(hip BMD)	   1.00	% [NR] of variance explained	Affymetrix [379,319]	N
03/18/2009	19249006	Xiong DH	02/25/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19249006	Genome-wide association and follow-up replication studies identified ADAMTS18 and TGFBR3 as bone mass candidate genes in different ethnic groups.	Bone mineral density	1,000 European ancestry individuals	4,925 European ancestry individuals, 350 Chinese ancestry hip fracture cases, 350 Chinese ancestry hip fracture controls, 2,955 Chinese ancestry individuals, 908 West African ancestry men	1p22.1	1	91745463	TGFBR3	TGFBR3			7049			rs17131547-A	rs17131547	0	17131547	intron	0	0.01	1E-6	5.999999999999999	(spine BMD)	   1.20	% [NR] of variance explained	Affymetrix [379,319]	N
03/01/2009	19230858	Schrauwen I	02/18/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19230858?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide analysis identifies genetic variants in the RELN gene associated with otosclerosis.	Otosclerosis	302 cases, 302 controls	847 cases, 872 controls	7q22.1	7	103886922	RELN	RELN			5649			rs3914132-?	rs3914132	0	3914132	intron	0	0.23	2E-8	7.698970004336018		   1.54	[1.32-1.79] 	Illumina [~555,000] (pooled)	N
05/07/2009	19389651	Smith JG	02/15/2009	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/19389651	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	3p22.2	3	38553482	SCN5A	SCN5A			6331			rs7638909-G	rs7638909	0	7638909	intron	0	0.40	2E-6	5.698970004336018	(PR interval)	   4.80	[2.84-6.76] ms increase	Affymetrix [338,049]	N
05/07/2009	19389651	Smith JG	02/15/2009	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/19389651	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	2q31.1	2	175424591	Intergenic	RPS15AP14 - EXTL2P1	100127924	100287682		      239.94	      418.31	rs2461751-G	rs2461751	0	2461751	Intergenic	1	0.44	8E-6	5.096910013008055	(PR interval)	   4.54	[2.58-6.50] ms increase	Affymetrix [338,049]	N
05/07/2009	19389651	Smith JG	02/15/2009	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/19389651	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	3p22.2	3	38400999	SCN5A	XYLB			9942			rs2070488-A	rs2070488	0	2070488	intron	0	0.33	4E-6	5.397940008672037	(PR interval)	   5.00	[2.84-7.16] ms decrease	Affymetrix [338,049]	N
05/07/2009	19389651	Smith JG	02/15/2009	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/19389651	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	4p16.2	4	5219811	MSX1	STK32B			55351			rs2008242-?	rs2008242	0	2008242	intron	0	0.15	3E-6	5.522878745280337	(PR segment)	NR	NR	Affymetrix [338,049]	N
05/07/2009	19389651	Smith JG	02/15/2009	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/19389651	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	1q32.1	1	200703778	NR	DDX59 - CAMSAP2	83479	23271		       33.78	       35.78	rs7512898-?	rs7512898	0	7512898	Intergenic	1	0.41	5E-6	5.301029995663981	(PR segment)	NR	NR	Affymetrix [338,049]	N
05/07/2009	19389651	Smith JG	02/15/2009	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/19389651	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	4q31.3	4	153782444	NR	SFRP2			6423			rs17030434-?	rs17030434	0	17030434	intron	0	0.43	5E-6	5.301029995663981	(P wave duration)	NR	NR	Affymetrix [338,049]	N
05/07/2009	19389651	Smith JG	02/15/2009	Heart Rhythm	http://www.ncbi.nlm.nih.gov/pubmed/19389651	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	6p12.3	6	51091008	NR	TRNAI25			100189401			rs283566-?	rs283566	0	283566		0	0.16	9E-6	5.045757490560675	(P wave duration)	NR	NR	Affymetrix [338,049]	N
02/28/2009	19219042	Zheng W	02/15/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19219042	Genome-wide association study identifies a new breast cancer susceptibility locus at 6q25.1.	Breast cancer	1,505 Chinese ancestry cases, 1,522 Chinese ancestry controls	5,026 Chinese ancestry cases, 2,476 Chinese ancestry controls, 1,591 European ancestry cases, 1,466 European ancestry controls	6q25.1	6	151627231	ESR1, C6orf97	CCDC170 - ESR1	80129	2099		        6.04	       63.27	rs2046210-A	rs2046210	0	2046210	Intergenic	1	0.37	2E-15	14.69897000433602		   1.29	[1.21-1.37] 	Affymetrix [up to 607,728]	N
02/28/2009	19221038	Soranzo N	02/12/2009	Blood	http://www.ncbi.nlm.nih.gov/pubmed/19221038?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A novel variant on chromosome 7q22.3 associated with mean platelet volume, counts, and function.	Mean platelet volume	1,221 individuals	7,365 individuals	7q22.3	7	106731773	Intergenic	CCDC71L - RNA5SP236	168455	100873494		       70.59	       49.83	rs342293-G	rs342293	0	342293	Intergenic	1	0.45	1E-24	24		    .02	[0.014-0.018] log fl increase	Affymetrix [361,352]	N
03/01/2009	19198612	Erdmann J	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198612?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New susceptibility locus for coronary artery disease on chromosome 3q22.3.	Coronary heart disease	1,222 European ancestry cases, 1,298 European ancestry controls	18,185 European ancestry cases, 20,068 European ancestry controls	3q22.3	3	138403280	MRAS	MRAS			22808			rs9818870-T	rs9818870	0	9818870	UTR-3	0	0.15	7E-13	12.15490195998574		   1.15	[1.11-1.19] 	Affymetrix [567,119]	N
03/01/2009	19198612	Erdmann J	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198612?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New susceptibility locus for coronary artery disease on chromosome 3q22.3.	Coronary heart disease	1,222 European ancestry cases, 1,298 European ancestry controls	18,185 European ancestry cases, 20,068 European ancestry controls	12q24.31	12	120997784	HNF1A,C12orf43	HNF1A			6927			rs2259816-T	rs2259816	0	2259816	intron	0	0.36	5E-7	6.30102999566398		   1.08	[1.05-1.11] 	Affymetrix [567,119]	N
03/01/2009	19198610	Gudbjartsson DF	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198610	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	2q12.1	2	102341256	IL1RL1	IL1RL1			9173			rs1420101-A	rs1420101	0	1420101	ncRNA	0	0.41	5E-14	13.30102999566398	(European)	   6.40	[4.7-8.1] % standard unit increase	Illumina [312,179]	N
03/01/2009	19198610	Gudbjartsson DF	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198610	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	2q34	2	212959321	IKZF2	MIR4776-1 - IKZF2	100616267	22807		       32.99	       40.36	rs12619285-G	rs12619285	0	12619285	Intergenic	1	0.74	5E-10	9.301029995663981	(European)	   6.30	[4.3-8.3] % standard unit increase	Illumina [312,179]	N
03/01/2009	19198610	Gudbjartsson DF	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198610	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	3q21.3	3	128541707	GATA2	TMED10P2 - C3orf27	100129727	23434		        3.08	       30.29	rs4857855-T	rs4857855	0	4857855	Intergenic	1	0.82	9E-17	16.04575749056067	(European)	   9.40	[7.2-11.6] % standard unit increase	Illumina [312,179]	N
03/01/2009	19198610	Gudbjartsson DF	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198610	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	12q24.12	12	111446804	SH2B3	SH2B3			10019			rs3184504-T	rs3184504	0	3184504	missense	0	0.38	7E-19	18.15490195998574	(European)	   7.60	[5.9-9.3] % standard unit increase	Illumina [312,179]	N
03/01/2009	19198610	Gudbjartsson DF	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198610	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	5q31.1	5	132527285	IL5	IRF1 - IL5	3659	3567		       36.51	       14.16	rs4143832-C	rs4143832	0	4143832	Intergenic	1	0.16	1E-10	10	(European)	   7.10	[4.9-9.2] % standard unit increase	Illumina [312,179]	N
03/01/2009	19198610	Gudbjartsson DF	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198610	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	5q22.1	5	111099792	WDR36, TSLP	WDR36			134430			rs2416257-G	rs2416257	0	2416257	intron	0	0.85	1E-6	5.999999999999999	(European)	   6.10	[3.7-8.6] % standard unit increase	Illumina [312,179]	N
03/01/2009	19198610	Gudbjartsson DF	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198610	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	6p21.33	6	32108722	MHC	TNXB			7148			rs2269426-T	rs2269426	0	2269426	intron	0	0.76	3E-6	5.522878745280337	(European)	   4.60	[2.7-6.6] % standard unit increase	Illumina [312,179]	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	9p21.3	9	22098575	CDKN2A, CDKN2B	CDKN2B-AS1			100048912			rs4977574-G	rs4977574	0	4977574	intron	0	0.56	3E-44	43.52287874528033		   1.29	[1.25-1.34] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	1p13.3	1	109275908	CELSR2, PSRC1, SORT1	CELSR2			1952			rs646776-T	rs646776	0	646776	nearGene-3	0	0.81	8E-12	11.09691001300806		   1.19	[1.13-1.26] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	1q41	1	222650187	MIA3	MIA3			375056			rs17465637-C	rs17465637	0	17465637	intron	0	0.72	1E-9	8.999999999999998		   1.14	[1.10-1.19] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	10q11.21	10	44280376	CXCL12	LINC00841 - CXCL12	283033	6387		      310.47	       89.78	rs1746048-C	rs1746048	0	1746048	Intergenic	1	0.84	7E-9	8.154901959985743		   1.17	[1.11-1.24] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	21q22.11	21	34226827	SLC5A3, MRPS6, KCNE2	LINC00310 - KCNE2	114036	9992		       36.91	      137.20	rs9982601-T	rs9982601	0	9982601	Intergenic	1	0.13	6E-11	10.22184874961635		   1.20	[1.14-1.27] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	6p24.1	6	12927312	PHACTR1	PHACTR1			221692			rs12526453-C	rs12526453	0	12526453	intron	0	0.65	1E-9	8.999999999999998		   1.12	[1.08-1.17] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	2q33.2	2	202881162	WDR12	WDR12			55759			rs6725887-C	rs6725887	0	6725887	intron	0	0.14	1E-8	8		   1.17	[1.11-1.23] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	19p13.2	19	11052925	LDLR	SMARCA4			6597			rs1122608-G	rs1122608	0	1122608	intron	0	0.75	2E-9	8.698970004336019		   1.15	[1.10-1.20] 	Affymetrix [~2.5 million] (imputed)	N
03/01/2009	19198609	Kathiresan S	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198609?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	1p32.3	1	55030366	PCSK9	BSND - PCSK9	7809	255738		       21.57	        9.11	rs11206510-T	rs11206510	0	11206510	Intergenic	1	0.81	1E-8	8		   1.15	[1.10-1.21] 	Affymetrix [~2.5 million] (imputed)	N
04/01/2009	19198611	Tregouet DA	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198611?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide haplotype association study identifies the SLC22A3-LPAL2-LPA gene cluster as a risk locus for coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	7,073 European ancestry cases, 7,325 European ancestry controls	6q25.3[rs2048327]; 6q25.3[rs3127599]			SLC22A3,LPAL2,LPA	 - 						4-SNP haplotype-1	rs2048327,rs3127599,rs7767084,rs10755578					0.16	1E-9		(CTTG)	   1.20	[1.13-1.28] 	Affymetrix [~500,000]	N
04/01/2009	19198611	Tregouet DA	02/08/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198611?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide haplotype association study identifies the SLC22A3-LPAL2-LPA gene cluster as a risk locus for coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	7,073 European ancestry cases, 7,325 European ancestry controls	6q25.3[rs2048327]; 6q25.3[rs3127599]			SLC22A3,LPAL2,LPA	 - 						4-SNP haplotype-2	rs2048327,rs3127599,rs7767084,rs10755578					0.02	4E-15		(CCTC)	   1.82	[1.57-2.12] 	Affymetrix [~500,000]	N
02/28/2009	19198613	Gudmundsson J	02/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198613?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations.	Thyroid cancer	192 European ancestry cases, 37,196 European ancestry controls	432 European ancestry cases, 1,727 European ancestry controls	9q22.33	9	97793827	FOXE1	KRT18P13 - FOXE1	392371	2304		       93.03	       59.43	rs965513-A	rs965513	0	965513	Intergenic	1	0.34	2E-27	26.69897000433602		   1.75	[1.59-1.94] 	Illumina [304,083]	N
02/28/2009	19198613	Gudmundsson J	02/06/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19198613?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations.	Thyroid cancer	192 European ancestry cases, 37,196 European ancestry controls	432 European ancestry cases, 1,727 European ancestry controls	14q13.3	14	36180040	NKX2-1	PTCSC3 - MBIP	100886964	51562		        3.39	      118.52	rs944289-T	rs944289	0	944289	Intergenic	1	0.57	2E-9	8.698970004336019		   1.37	[1.24-1.52] 	Illumina [304,083]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p15.3	10	1634336	ADARB2	ADARB2			105			rs6560749-T	rs6560749	0	6560749	intron	0	0.14	2E-6	5.698970004336018	(BMI)	    .32	[NR] kg/m2 decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7p14.1	7	41439010	Intergenic	SUGCT - INHBA	79783	3624		      578.24	      249.99	rs10486715-A	rs10486715	0	10486715	Intergenic	1	0.07	3E-6	5.522878745280337	(height)	    .44	[NR] inch decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	3q25.33	3	159541502	SCHIP1	SCHIP1;IQCJ-SCHIP1			29970;100505385			rs2222328-C	rs2222328	0	2222328	intron;intron	0	0.32	8E-7	6.096910013008056	(WC)	    .22	[NR] inch decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	9p21.3	9	22670716	Intergenic	LINC01239			441389			rs613391-G	rs613391	0	613391	intron	0	0.49	5E-6	5.301029995663981	(WC)	    .20	[NR] inch increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	9p21.3	9	24111282	Intergenic	ELAVL2 - IZUMO3	1993	100129669		      284.94	      431.91	rs2225614-C	rs2225614	0	2225614	Intergenic	1	0.50	3E-6	5.522878745280337	(weight)	    .21	[NR] lb. decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	2q22.3	2	143671039	ARHGAP15	ARHGAP15			55843			rs10928195-C	rs10928195	0	10928195	intron	0	0.08	4E-6	5.397940008672037	(weight)	    .36	[NR] lb. decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7q33	7	138472645	TRIM24	TRIM24			8805			rs1874326-G	rs1874326	0	1874326	intron	0	0.47	9E-6	5.045757490560675	(weight)	    .22	[NR] lb. increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	20q13.12	20	46831684	Intergenic	SLC2A10 - RPL13P14	81031	100130374		       95.34	       31.86	rs6066084-A	rs6066084	0	6066084	Intergenic	1	0.06	2E-6	5.698970004336018	(% body fat)	    .85	[NR] % increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p15.3	10	1634336	ADARB2	ADARB2			105			rs6560749-T	rs6560749	0	6560749	intron	0	0.14	8E-6	5.096910013008055	(% body fat)	    .34	[NR] % decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q35.3	5	180799673	MGAT1	MGAT1;LOC102724833			4245;102724833			rs655601-A	rs655601	0	655601	intron;intron	0	0.47	5E-6	5.301029995663981	(HDL-C)	    .23	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	6p22.3	6	22743174	Intergenic	HDGFL1 - RPL6P18	154150	100131805		      172.65	      359.49	rs10498712-G	rs10498712	0	10498712	Intergenic	1	0.25	9E-6	5.045757490560675	(HDL-C)	    .23	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	19	45192480	MGC2650, BLOC1S3, XTP7	BLOC1S3 - EXOC3L2	388552	90332		       10.68	       20.14	rs2159324-T	rs2159324	0	2159324	Intergenic	1	0.44	4E-7	6.397940008672037	(LDL-C)	    .21	[NR] mg/dL decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q13.3	5	75359901	COL4A3BP, HMGCR	HMGCR			3156			rs3846663-T	rs3846663	0	3846663	intron	0	0.39	1E-6	5.999999999999999	(LDL-C)	    .21	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	19	44919689	TOMM40, APOC2, APOE, APOC4, APOC1	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.21	3E-7	6.522878745280337	(TC)	    .28	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q13.3	5	75359901	COL4A3BP, HMGCR	HMGCR			3156			rs3846663-T	rs3846663	0	3846663	intron	0	0.39	6E-6	5.221848749616356	(TC)	    .19	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p13	10	15677622	ITGA8	ITGA8			8516			rs7895372-G	rs7895372	0	7895372	missense	0	0.04	6E-6	5.221848749616356	(TC)	    .35	[NR] mg/dL decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7p21.3	7	8959346	Intergenic	RPL9P19 - GAPDHP68	100129634	100132601		       19.89	      655.56	rs17157663-A	rs17157663	0	17157663	Intergenic	1	0.32	9E-6	5.045757490560675	(TC)	    .18	[NR] mg/dL decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	11q23.3	11	116813312	Intergenic	APOA5 - APOA4	116519	337		       20.89	        7.39	rs7396835-T	rs7396835	0	7396835	Intergenic	1	0.32	1E-9	8.999999999999998	(TG)	    .23	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	19	44919689	TOMM40, APOC2, APOE, APOC4, APOC1	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.21	5E-6	5.301029995663981	(TG)	    .22	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	4q21.21	4	79643354	Intergenic	OR7E94P - PCAT4	79273	118425		       55.27	      184.12	rs10518224-A	rs10518224	0	10518224	Intergenic	1	0.23	7E-6	5.154901959985742	(TG)	    .19	[NR] mg/dL increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p12.31	10	18441439	CACNB2	CACNB2			783			rs7069923-C	rs7069923	0	7069923	intron	0	0.49	1E-6	5.999999999999999	(SBP)	    .19	[NR] mm Hg increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7q36.3	7	157297602	UBE3C	RPL36AP30 - DNAJB6	100271511	10049		       34.20	       39.41	rs2527866-C	rs2527866	0	2527866	Intergenic	1	0.23	3E-6	5.522878745280337	(SBP)	    .27	[NR] mm Hg decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	5q35.1	5	171649223	Intergenic	FGF18 - SMIM23	8817	644994		      191.60	      136.59	rs254893-A	rs254893	0	254893	Intergenic	1	0.06	6E-6	5.221848749616356	(DBP)	    .58	[NR] mm Hg decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p13	10	16955892	CUBN	CUBN			8029			rs10508517-A	rs10508517	0	10508517	intron	0	0.43	6E-6	5.221848749616356	(DBP)	    .18	[NR] mm Hg decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	9q22.33	9	97933921	HEMGN, C9ORF156	HEMGN			55363			rs755109-C	rs755109	0	755109	intron	0	0.23	1E-6	5.999999999999999	(TSH)	    .31	[NR] mIU/L decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	7p22.2	7	3875932	SDK1	SDK1			221935			rs6462411-C	rs6462411	0	6462411	intron	0	0.20	1E-6	5.999999999999999	(TSH)	    .36	[NR] mIU/L decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	19	44919689	TOMM40, APOC2, APOE, APOC4, APOC1	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.21	2E-6	5.698970004336018	(CRP)	    .28	[NR] mg/L decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	12q24.13	12	113541851	Intergenic	LHX5 - LINC01234	64211	100506465		       69.78	      202.73	rs11066587-G	rs11066587	0	11066587	Intergenic	1	0.16	5E-6	5.301029995663981	(CRP)	    .26	[NR] mg/L increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	2p23.3	2	24024644	ENSG00000173957, UBXD4, FKBP1B, FLJ21945	MFSD2B			388931			rs7561273-A	rs7561273	0	7561273	intron	0	0.35	6E-6	5.221848749616356	(CRP)	    .22	[NR] mg/L decrease]	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	12p13.33	12	2773378	ENSG00000118975, FKBP4	LOC283440			283440			rs10848704-C	rs10848704	0	10848704	nearGene-5	0	0.35	2E-6	5.698970004336018	(TSH)	    .29	[NR] mIU/L decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	6q16.1	6	98291898	Intergenic	EIF4EBP2P3 - POU3F2	100190924	5454		      112.06	      542.81	rs6909430-G	rs6909430	0	6909430	Intergenic	1	0.08	8E-6	5.096910013008055	(TSH)	    .49	[NR] mIU/L decrease	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	12q24.31	12	120798455	SPPL3	SPPL3			121665			rs1039302-T	rs1039302	0	1039302	intron	0	0.36	5E-6	5.301029995663981	(CRP)	    .21	[NR] mg/L increase	Affymetrix [408,775]	N
10/15/2009	19197348	Lowe JK	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197348	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	19	45192480	MGC2650, BLOC1S3, XTP7	BLOC1S3 - EXOC3L2	388552	90332		       10.68	       20.14	rs2159324-T	rs2159324	0	2159324	Intergenic	1	0.44	2E-6	5.698970004336018	(CRP)	    .19	[NR] mg/L decrease	Affymetrix [408,775]	N
08/21/2009	19197363	Need AC	02/06/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19197363?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide investigation of SNPs and CNVs in schizophrenia.	Schizophrenia	871 European ancestry cases, 863 European ancestry controls	1,460 European ancestry cases, 12,995 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [312,565]	N
02/27/2009	19196962	Garcia-Barcelo MM	02/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19196962	Genome-wide association study identifies NRG1 as a susceptibility locus for Hirschsprung's disease.	Hirschsprung's disease	181 Chinese ancestry cases, 346 Chinese ancestry controls	190 Chinese ancestry cases, 510 Chinese ancestry controls	10q11.21	10	43117161	RET, GALNACT-2, RASGEF1A	RET			5979			rs2742234-T	rs2742234	0	2742234	intron	0	NR	4E-18	17.39794000867204		NR	NR	Affymetrix [293,836]	N
02/27/2009	19196962	Garcia-Barcelo MM	02/05/2009	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19196962	Genome-wide association study identifies NRG1 as a susceptibility locus for Hirschsprung's disease.	Hirschsprung's disease	181 Chinese ancestry cases, 346 Chinese ancestry controls	190 Chinese ancestry cases, 510 Chinese ancestry controls	8p12	8	32553698	NRG1	NRG1			3084			rs16879552-G	rs16879552	0	16879552	intron	0	0.61	2E-8	7.698970004336018		   1.68	[1.40-2.00] 	Affymetrix [293,836]	N
03/31/2009	19193627	Chio A	02/04/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19193627?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A two-stage genome-wide association study of sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	537 European ancestry cases, 1,984 European ancestry controls	2,741 European ancestry cases, 2,875 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [545,066]	N
02/27/2009	19188921	Liu YZ	02/03/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19188921	Genome-wide association analyses suggested a novel mechanism for smoking behavior regulated by IL15.	Smoking behavior	417 European ancestry males, 423 European ancestry females	412 African American males and 839 African American females from 402 families, 3,491 European ancestry males and 4,132 European ancestry females from 1,731 families	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [379,319]	N
02/27/2009	19207018	Kim H	02/01/2009	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/19207018	Genome-wide association study of acute post-surgical pain in humans.	Pain	112 European ancestry individuals	NA	19p12	19	21483408	LOC400680, ZNF429	LINC00664			400680			rs2562456-?	rs2562456	0	2562456	nearGene-5	0	NR	2E-10	9.698970004336017	(onset time of analgesia)	NR	NR	Affymetrix [374,975]	N
02/27/2009	19207018	Kim H	02/01/2009	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/19207018	Genome-wide association study of acute post-surgical pain in humans.	Pain	112 European ancestry individuals	NA	11q23.3	11	118274971	NR	MPZL2 - CD3E	10205	916		       10.44	       29.61	rs17122021-?	rs17122021	0	17122021	Intergenic	1	NR	7E-7	6.154901959985743	(maximum post-operative pain rating)	NR	NR	Affymetrix [374,975]	N
02/27/2009	19207018	Kim H	02/01/2009	Pharmacogenomics	http://www.ncbi.nlm.nih.gov/pubmed/19207018	Genome-wide association study of acute post-surgical pain in humans.	Pain	112 European ancestry individuals	NA	1p21.3	1	95680412	NR	FLJ31662 - UBE2WP1	440594	619457		      201.06	      738.16	rs6693882-?	rs6693882	0	6693882	Intergenic	1	NR	2E-6	5.698970004336018	(post-operative pain onset time)	NR	NR	Affymetrix [374,975]	N
02/28/2009	19187332	Kim SH	02/01/2009	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/19187332	Alpha-T-catenin (CTNNA3) gene was identified as a risk variant for toluene diisocyanate-induced asthma by genome-wide association analysis.	Asthma (toluene diisocyanate-induced)	84 Korean ancestry cases, 263 Korean ancestry controls	NA	13q12.13	13	26841536	Intergenic	GPR12 - FGFR1OP2P1	2835	100873883		       80.75	       63.95	rs9319321-T	rs9319321	0	9319321	Intergenic	1	0.29	3E-6	5.522878745280337		   5.20	[2.47-10.92] 	Affymetrix [312,978]	N
02/28/2009	19187332	Kim SH	02/01/2009	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/19187332	Alpha-T-catenin (CTNNA3) gene was identified as a risk variant for toluene diisocyanate-induced asthma by genome-wide association analysis.	Asthma (toluene diisocyanate-induced)	84 Korean ancestry cases, 263 Korean ancestry controls	NA	10q21.3	10	66328750	CTNNA3	CTNNA3			29119			rs10762058-G	rs10762058	0	10762058	intron	0	0.25	6E-6	5.221848749616356		   5.00	[2.36-10.6] 	Affymetrix [312,978]	N
02/28/2009	19187332	Kim SH	02/01/2009	Clin Exp Allergy	http://www.ncbi.nlm.nih.gov/pubmed/19187332	Alpha-T-catenin (CTNNA3) gene was identified as a risk variant for toluene diisocyanate-induced asthma by genome-wide association analysis.	Asthma (toluene diisocyanate-induced)	84 Korean ancestry cases, 263 Korean ancestry controls	NA	9p21.3	9	20098713	Intergenic	GLRX3P1 - SMNP	100418908	64939		      130.70	      232.70	rs16937883-G	rs16937883	0	16937883	Intergenic	1	0.02	7E-6	5.154901959985742		   5.29	[2.41-11.61] 	Affymetrix [312,978]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	1p36.32	1	5110652	Intergenic	AJAP1 - MIR4417	55966	100616489		      326.86	      453.42	rs7513590-?	rs7513590	0	7513590	Intergenic	1	0.10	5E-6	5.301029995663981	(height)	    .31	[0.17-0.45] mm decrease	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	5q33.2	5	153599994	AMPA1, GRIA1	GRIA1			2890			rs12658202-?	rs12658202	0	12658202	intron	0	0.45	9E-6	5.045757490560675	(height)	    .11	[0.06-0.16] mm increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	14q23.3	14	65178532	MAX	MIR4706 - RPL21P7	100616490	145370		      133.76	       88.07	rs7158173-?	rs7158173	0	7158173	Intergenic	1	0.48	4E-6	5.397940008672037	(waist circumference)	    .11	[0.06-0.16] mm decrease	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	16p11.2	16	29874126	SEZ6L2	SEZ6L2			26470			rs4787483-?	rs4787483	0	4787483	intron	0	0.34	2E-6	5.698970004336018	(waist cirumference)	    .16	[0.09-0.23] mm increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	7q22.1	7	99610253	ZNF498	GS1-259H13.2			100289187			rs7792939-?	rs7792939	0	7792939	intron	0	0.15	5E-6	5.301029995663981	(brachial circumference)	    .26	[0.15-0.37] mm increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	5q33.3	5	156712558	SGCD	SGCD			6444			rs157350-?	rs157350	0	157350	intron	0	0.11	4E-6	5.397940008672037	(brachial circumference)	    .31	[0.18-0.44] mm decrease	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	2p22.3	2	36299293	CRIM1	MRPL50P1 - RPL21P36	351143	100270956		      574.14	         .07	rs1863080-?	rs1863080	0	1863080	Intergenic	1	0.10	8E-6	5.096910013008055	(brachial circumference)	    .31	[0.17-0.45] mm increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	7q22.1	7	99610253	ZNF498	GS1-259H13.2			100289187			rs7792939-?	rs7792939	0	7792939	intron	0	0.15	4E-6	5.397940008672037	(weight)	    .26	[0.15-0.37] kg increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	14q32.12	14	94096847	LOC122509, FAM14B	IFI27L1			122509			rs7157940-?	rs7157940	0	7157940	intron	0	0.46	3E-6	5.522878745280337	(weight)	    .12	[0.07-0.17] kg increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	2q31.1	2	173497621	Intergenic	CDCA7 - RPL5P7	83879	344178		      128.63	      373.95	rs7590983-?	rs7590983	0	7590983	Intergenic	1	0.05	6E-6	5.221848749616356	(BMI)	    .46	[0.26-0.66] kg/m2 increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	7q22.1	7	99610253	ZNF498	GS1-259H13.2			100289187			rs7792939-?	rs7792939	0	7792939	intron	0	0.15	6E-6	5.221848749616356	(hip circumference)	    .26	[0.15-0.37] mm increase	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	5q33.3	5	156712558	SGCD	SGCD			6444			rs157350-?	rs157350	0	157350	intron	0	0.11	6E-6	5.221848749616356	(hip circumference)	    .31	[0.18-0.44] mm decrease	Illumina [316,730]	N
03/30/2009	19260139	Polasek O	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260139?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan's individuals	NA	13q14.3	13	50411982	XTP6	DLEU1			10301			rs201789-?	rs201789	0	201789	intron	0	0.28	6E-6	5.221848749616356	(brachial circumference)	    .17	[0.10-0.24] mm increase	Illumina [316,730]	N
12/29/2009	20031564	Ridker PM	02/01/2009	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031564?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=6	Polymorphism in the CETP gene region, HDL cholesterol, and risk of future myocardial infarction: Genomewide analysis among 18 245 initially healthy women from the Women's Genome Health Study.	HDL cholesterol	18,245 European ancestry females	NA	16q13	16	56961324	CETP, NUP93, SLC12A3, HERPUD1	CETP			1071			rs1800775-A	rs1800775	0	1800775	nearGene-5	0	0.49	4E-93	92.39794000867202		   3.09	 mg/dL increase	Illumina [~318,237]	N
02/25/2009	19182806	Stefansson H	02/01/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19182806?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variant in the sequence of the LINGO1 gene confers risk of essential tremor.	Essential tremor	452 European ancestry cases, 14,378 European ancestry controls	301 European ancestry cases, 1,419 European ancestry controls	15q24.3	15	77671545	LINGO1	LINGO1			84894			rs9652490-G	rs9652490	0	9652490	intron	0	0.23	1E-9	8.999999999999998		   1.55	[1.35-1.79] 	Illumina [305,624]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	12q21.33	12	91770525	Intergenic	DCN - C12orf79	1634	256021		      587.50	      214.45	rs10777332-A	rs10777332	0	10777332	Intergenic	1	0.11	5E-6	5.301029995663981	(total cholesterol)	    .24	[0.14-0.34] mmol/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	12q24.23	12	117916066	KSR2	KSR2			283455			rs10444502-C	rs10444502	0	10444502	intron	0	0.28	6E-6	5.221848749616356	(total cholesterol)	    .17	[0.10-0.24] mmol/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	21q22.3	21	43016067	PKNOX1	PKNOX1			5316			rs2839619-G	rs2839619	0	2839619	intron	0	0.40	8E-6	5.096910013008055	(total cholesterol)	    .13	[0.07-0.19] mmol/L increase	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	4q31.23	4	148400194	NR3C2	NR3C2			4306			rs1490453-A	rs1490453	0	1490453	intron	0	0.17	3E-6	5.522878745280337	(fibrinogen)	    .25	[0.15-0.35] g/L increase	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	6q16.3	6	101907992	GRIK2	GRIK2			2898			rs12207601-G	rs12207601	0	12207601	intron	0	0.16	2E-6	5.698970004336018	(fibrinogen)	    .26	[0.15-0.37] g/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	20p12.1	20	17387897	PCSK2	PCSK2			5126			rs6044777-A	rs6044777	0	6044777	intron	0	0.17	8E-6	5.096910013008055	(fibrinogen)	    .23	[0.13-0.33] g/L increase	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	Xp22.31	23	6302433	Neuroligin 4	NLGN4X - MIR4770	57502	100616373		       73.55	       81.47	rs7885458-G	rs7885458	0	7885458	Intergenic	1	0.24	3E-6	5.522878745280337	(fibrinogen)	    .23	[0.13-0.33] g/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	4p16.1	4	9925343	SLC2A9	SLC2A9			56606			rs13129697-C	rs13129697	0	13129697	intron	0	0.25	1E-9	8.999999999999998	(uric acid)	    .29	[0.21-0.37] umol/l decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	18q12.3	18	45573984	SLC14A2	SLC14A2			8170			rs10502868-G	rs10502868	0	10502868	intron	0	0.08	7E-6	5.154901959985742	(albumin)	    .04	[0.21-0.51] g/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	4q13.1	4	61100555	LPHN3	MIR548AG1 - RPL17P19	100616450	100271150		      177.87	      111.10	rs4599440-A	rs4599440	0	4599440	Intergenic	1	0.23	2E-6	5.698970004336018	(HDL cholesterol)	    .20	[0.12-0.28] mmol/L increase	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	12q12	12	41778180	Intergenic	MTND1P24 - GXYLT1	100873341	283464		       77.93	      303.67	rs871392-A	rs871392	0	871392	Intergenic	1	0.15	3E-6	5.522878745280337	(HDL cholesterol)	    .26	[0.15-0.37] mmol/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	16q13	16	56972678	CETP	CETP			1071			rs7499892-A	rs7499892	0	7499892	intron	0	0.16	9E-6	5.045757490560675	(HDL cholesterol)	    .24	[0.14-0.34] mmol/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	12q24.23	12	117873938	KSR2	KSR2			283455			rs4767631-A	rs4767631	0	4767631	intron	0	0.31	6E-7	6.221848749616355	(LDL cholesterol)	    .12	[0.11-0.23] mmol/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	21q22.3	21	43016067	PKNOX1	PKNOX1			5316			rs2839619-G	rs2839619	0	2839619	intron	0	0.40	8E-6	5.096910013008055	(LDL cholesterol)	    .13	[0.08-0.18] mmol/L increase	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	4q12	4	52545963	USP46	SPATA18 - USP46	132671	64854		      448.67	       45.00	rs346923-A	rs346923	0	346923	Intergenic	1	0.13	2E-6	5.698970004336018	(triglycerides)	    .28	[0.17-0.39] mmol/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	4q23	4	98416730	RAP1GDS1	RAP1GDS1			5910			rs10516430-A	rs10516430	0	10516430	intron	0	0.28	6E-6	5.221848749616356	(triglycerides)	    .16	[0.09-0.23] mmol/L decrease	Illumina [316,730]	N
03/31/2009	19260141	Zemunik T	02/01/2009	Croat Med J	http://www.ncbi.nlm.nih.gov/pubmed/19260141?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan individuals	NA	Xq23	23	112403236	ZCCHC16	ZCCHC16			340595			rs5982533-G	rs5982533	0	5982533	intron	0	0.22	7E-6	5.154901959985742	(triglycerides)	    .23	[0.13-0.33] mmol/L decrease	Illumina [316,730]	N
02/25/2009	19181680	Timpson NJ	01/30/2009	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19181680?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in the region around Osterix are associated with bone mineral density and growth in childhood.	Bone mineral density	1,418 European ancestry children, 134 European ancestry adults	3,875 European ancestry children	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [up to 315,807]	N
02/28/2009	19185284	Ferrucci L	01/29/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19185284?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variation in the beta-carotene 15,15'-monooxygenase 1 gene affects circulating levels of carotenoids: a genome-wide association study.	Carotenoid and tocopherol levels	1,191 European ancestry individuals	2,540 European ancestry individuals, 211 individuals	16q23.2	16	81230992	BCMO1	PKD1L2 - BCMO1	114780	53630		       10.62	        7.70	rs6564851-G	rs6564851	0	6564851	Intergenic	1	0.39	2E-24	23.69897000433602	(beta-carotene)	    .15	[0.120-0.177] umol/L increase	Illumina [~500,451]	N
02/28/2009	19185284	Ferrucci L	01/29/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19185284?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variation in the beta-carotene 15,15'-monooxygenase 1 gene affects circulating levels of carotenoids: a genome-wide association study.	Carotenoid and tocopherol levels	1,191 European ancestry individuals	2,540 European ancestry individuals, 211 individuals	11q23.3	11	116733008	APOA5	RPL15P15 - BUD13	100128347	84811		      782.21	       15.16	rs12272004-A	rs12272004	0	12272004	Intergenic	1	0.07	8E-10	9.096910013008054	(alpha-tocopherol)	    .07	[0.049-0.095] umol/L increase	Illumina [~500,451]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	10p12.33	10	17346144	ST8SIA6	ST8SIA6			338596			rs359312-T	rs359312	0	359312	intron	0	NR	9E-8	7.045757490560674		   3.91	[1.52-10.10] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	4q31.21	4	141788570	IL15	IL15 - INPP4B	3600	8821		       54.58	      239.46	rs17007695-C	rs17007695	0	17007695	Intergenic	1	NR	9E-7	6.045757490560675		   2.67	[1.53-4.68] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	2q33.1	2	200157231	C2orf47	C2orf47 - SPATS2L	79568	26010		      193.11	      148.65	rs1569175-T	rs1569175	0	1569175	Intergenic	1	NR	9E-7	6.045757490560675		   2.73	[1.52-4.93] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	20q13.12	20	47579861	NCOA3	NCOA3			8202			rs6125048-T	rs6125048	0	6125048	intron	0	NR	2E-6	5.698970004336018		   2.73	[1.08-6.88] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	7p14.1	7	37226747	ELMO1	ELMO1			9844			rs4723619-C	rs4723619	0	4723619	intron	0	NR	3E-6	5.522878745280337		   3.01	[1.50-6.03] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	7p21.2	7	14406292	DGKB	DGKB			1607			rs6971925-T	rs6971925	0	6971925	intron	0	NR	3E-6	5.522878745280337		  13.91	[2.72-70.92] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	10q26.12	10	121141109	intergenic	RPL19P16 - LINC01153	646255	101927889		        7.36	       37.59	rs2901286-A	rs2901286	0	2901286	Intergenic	1	NR	4E-6	5.397940008672037		   4.66	[1.58-13.7] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	11p15.1	11	20540973	intergenic	PRMT3 - HMGB1P40	10196	100506595		       31.64	       33.21	rs7128311-C	rs7128311	0	7128311	Intergenic	1	NR	5E-6	5.301029995663981		  13.90	[2.72-71.1] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	6q25.3	6	155608667	intergenic	NOX3 - MIR1202	50508	100302259		      152.76	      338.13	rs35229355-T	rs35229355	0	35229355	Intergenic	1	NR	5E-6	5.301029995663981		   7.24	[2.46-21.30] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	5p13.2	5	36137518	LMBRD2	LMBRD2			92255			rs267759-A	rs267759	0	267759	intron	0	NR	7E-6	5.154901959985742		   3.23	[1.52-6.87] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	10p14	10	8108750	Intergenic	GATA3-AS1 - PRPF38AP1	399717	389935		       55.27	       52.51	rs10508343-A	rs10508343	0	10508343	Intergenic	1	NR	8E-6	5.096910013008055		   3.81	[1.40-10.40] 	Affymetrix [476,796]	N
02/26/2009	19176441	Yang JJ	01/28/2009	JAMA	http://www.ncbi.nlm.nih.gov/pubmed/19176441?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 Other ancestry cases	NA	11q21	11	96266936	MAML2	MAML2			84441			rs7115578-A	rs7115578	0	7115578	intron	0	NR	8E-6	5.096910013008055		   1.86	[1.23-2.79] 	Affymetrix [476,796]	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	6p21.33	6	31285148	HLA-C	TRNAI25			100189401			rs12191877-T	rs12191877	0	12191877		0	0.15	1E-100	100		   2.64	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	5q33.3	5	159290781	IL12B	UBLCP1 - IL12B	134510	3593		        4.74	       24.00	rs2082412-G	rs2082412	0	2082412	Intergenic	1	0.80	2E-28	27.69897000433602		   1.44	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	5q33.1	5	151098757	TNIP1	TNIP1 - ANXA6	10318	309		       11.10	        1.95	rs17728338-A	rs17728338	0	17728338	Intergenic	1	0.054	1E-20	20		   1.59	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	5q31.1	5	132660272	IL13	IL13			3596			rs20541-G	rs20541	0	20541	missense	0	0.79	5E-15	14.30102999566398		   1.27	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	6q23.3	6	137878280	TNFAIP3	TNFAIP3			7128			rs610604-G	rs610604	0	610604	intron	0	0.32	9E-12	11.04575749056067		   1.19	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	12q13.3	12	56344189	IL23A, STAT2	STAT2			6773			rs2066808-A	rs2066808	0	2066808	intron	0	0.93	1E-9	8.999999999999998		   1.34	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	1p31.3	1	67228519	IL23R	IL23R			149233			rs2201841-G	rs2201841	0	2201841	intron	0	0.30	3E-8	7.522878745280337		   1.13	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/06/2009	19169254	Nair RP	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169254?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	9q34.13	9	132900647	TSC1	TSC1			7248			rs1076160-T	rs1076160	0	1076160	intron	0	0.48	6E-6	5.221848749616356		   1.09	[NR] 	Perlegen [~2.5 million] (imputed)	N
02/07/2009	19169255	Zhang XJ	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169255	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	1q21.3	1	152577542	LCE3D, LCE3A	LCE3E - LCE3D	353145	84648		       10.79	        1.84	rs4085613-A	rs4085613	0	4085613	Intergenic	1	0.43	7E-30	29.15490195998574		   1.32	[1.25-1.39] 	Illumina [494,902]	N
02/07/2009	19169255	Zhang XJ	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169255	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	5q33.3	5	159323761	IL12B	IL12B			3593			rs3213094-A	rs3213094	0	3213094	intron	0	0.45	3E-26	25.52287874528034		   1.28	[1.23-1.35] 	Illumina [494,902]	N
02/07/2009	19169255	Zhang XJ	01/25/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19169255	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	6p21.33[rs1265181];			MHC	 - 						rs1265181-?	rs1265181					NR	NS		NS	  22.62	 	Illumina [494,902]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	1q32.1	1	201293304	PKP1	PKP1			5317			rs860554-?	rs860554	0	860554	intron	0	0.05	5E-8	7.30102999566398		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	6q25.1	6	150592825	PLEKHG1	SSR1P1 - PLEKHG1	100420476	57480		      207.73	        7.04	rs9372078-?	rs9372078	0	9372078	Intergenic	1	0.11	5E-7	6.30102999566398		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	8p21.1	8	27595330	CLU	GULOP - CLU	2989	1191		        6.26	        1.59	rs17466684-?	rs17466684	0	17466684	Intergenic	1	0.09	7E-7	6.154901959985743		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12p13.31	12	5687935	TMEM16B	ANO2			57101			rs12579350-?	rs12579350	0	12579350	intron	0	0.01	4E-9	8.397940008672036		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12q13.13	12	53720374	CALCOCO1	CALCOCO1			57658			rs941184-?	rs941184	0	941184	intron	0	0.03	3E-7	6.522878745280337		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	13q32.1	13	94811138	Intergenic	LOC101927284			101927284			rs9302001-?	rs9302001	0	9302001	intron	0	0.20	3E-7	6.522878745280337		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	17q25.1	17	73339121	SDK2	SDK2			54549			rs3816995-?	rs3816995	0	3816995	intron	0	0.03	2E-7	6.698970004336019		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	1p13.3	1	110695063	Intergenic	KCNA3 - NRBF2P3	3738	643232		       20.03	      152.52	rs12061304-?	rs12061304	0	12061304	Intergenic	1	0.10	1E-6	5.999999999999999		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	3p26.1	3	6861610	GRM7	GRM7			2917			rs3749380-?	rs3749380	0	3749380	cds-synon	0	0.25	2E-6	5.698970004336018		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	5q21.1	5	100655944	Intergenic	FAM174A - ST8SIA4	345757	7903		       69.20	      150.99	rs4702982-?	rs4702982	0	4702982	Intergenic	1	0.16	6E-6	5.221848749616356		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	6p12.3	6	47262879	TNFRSF21	TNFRSF21			27242			rs2103868-?	rs2103868	0	2103868	intron	0	0.26	5E-6	5.301029995663981		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12q12	12	42767023	Intergenic	RPS27P21 - MRPS36P5	100131905	347703		       87.87	      287.06	rs2731006-?	rs2731006	0	2731006	Intergenic	1	0.29	4E-6	5.397940008672037		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12q24.33	12	130906209	Intergenic	RAN - GPR133	5901	283383		       28.55	       47.70	rs7299940-?	rs7299940	0	7299940	Intergenic	1	0.29	7E-6	5.154901959985742		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	14q23.1	14	58867410	Intergenic	LOC102723742			102723742			rs4901869-?	rs4901869	0	4901869	intron	0	0.02	6E-6	5.221848749616356		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	19q13.33	19	49720009	Intergenic	RPS9P4			388556			rs3810265-?	rs3810265	0	3810265		0	0.07	4E-6	5.397940008672037		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	20p13	20	4188432	SMOX	SMOX - ADRA1D	54498	146		         .69	       32.20	rs16989303-?	rs16989303	0	16989303	Intergenic	1	0.21	6E-6	5.221848749616356		NR	NR	Affymetrix [253,903]	N
02/26/2009	19165232	Otowa T	01/23/2009	J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165232	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	21q21.1	21	15696847	USP25	RAD23BLP - USP25	54034	29761		         .44	       33.16	rs2823455-?	rs2823455	0	2823455	Intergenic	1	0.03	9E-6	5.045757490560675		NR	NR	Affymetrix [253,903]	N
02/25/2009	19165155	Ling H	01/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19165155?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide linkage and association analyses to identify genes influencing adiponectin levels: the GEMS Study.	Adiponectin levels	997 European ancestry cases, 989 European ancestry controls	NA	3q27.3	3	186855916	ADIPOQ	ADIPOQ;ADIPOQ-AS1			9370;100874095			rs6773957-A	rs6773957	0	6773957	UTR-3;ncRNA	0	0.37	5E-8	7.30102999566398		NR	NR	Affymetrix [398,625]	N
02/25/2009	19165155	Ling H	01/22/2009	Obesity (Silver Spring)	http://www.ncbi.nlm.nih.gov/pubmed/19165155?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide linkage and association analyses to identify genes influencing adiponectin levels: the GEMS Study.	Adiponectin levels	997 European ancestry cases, 989 European ancestry controls	NA	5q35.2	5	173507895	Intergenic	MIR8056 - BOD1	102465862	91272		      160.36	       99.25	rs7722022-?	rs7722022	0	7722022	Intergenic	1	NR	9E-6	5.045757490560675		NR	NR	Affymetrix [398,625]	N
03/03/2009	19151714	Meyre D	01/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19151714?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry obese adults, 731 European ancestry lean adults, 685 European ancestry obese children, 685 European ancestry lean children	1,171 European ancestry obese adults, 1,114 European ancestry lean adults, 4,417 European ancestry adults, 856 European ancestry obese children, European ancestry 1,297 lean children and young adults, 5,291 European ancestry children 	16q12.2	16	53767042	FTO	FTO			79068			rs1421085-C	rs1421085	0	1421085	intron	0	0.40	1E-28	28	(children)	   1.39	[1.27-1.51] 	Illumina [308,846]	N
03/03/2009	19151714	Meyre D	01/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19151714?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry obese adults, 731 European ancestry lean adults, 685 European ancestry obese children, 685 European ancestry lean children	1,171 European ancestry obese adults, 1,114 European ancestry lean adults, 4,417 European ancestry adults, 856 European ancestry obese children, European ancestry 1,297 lean children and young adults, 5,291 European ancestry children 	18q21.32	18	60183864	MC4R	RPS3AP49 - MC4R	400652	4160		       33.46	      187.47	rs17782313-C	rs17782313	0	17782313	Intergenic	1	0.18	5E-15	14.30102999566398	(children)	   1.22	[1.05-1.40] 	Illumina [308,846]	N
03/03/2009	19151714	Meyre D	01/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19151714?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry obese adults, 731 European ancestry lean adults, 685 European ancestry obese children, 685 European ancestry lean children	1,171 European ancestry obese adults, 1,114 European ancestry lean adults, 4,417 European ancestry adults, 856 European ancestry obese children, European ancestry 1,297 lean children and young adults, 5,291 European ancestry children 	18q11.2	18	23560468	NPC1	NPC1			4864			rs1805081-A	rs1805081	0	1805081	missense	0	0.56	3E-7	6.522878745280337	(children)	   1.33	[1.08-1.75] 	Illumina [308,846]	N
03/03/2009	19151714	Meyre D	01/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19151714?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry obese adults, 731 European ancestry lean adults, 685 European ancestry obese children, 685 European ancestry lean children	1,171 European ancestry obese adults, 1,114 European ancestry lean adults, 4,417 European ancestry adults, 856 European ancestry obese children, European ancestry 1,297 lean children and young adults, 5,291 European ancestry children 	16q23.2	16	79648854	MAF	MAF - DYNLRB2	4094	83657		       48.13	      892.10	rs1424233-A	rs1424233	0	1424233	Intergenic	1	0.43	4E-13	12.39794000867204	(children)	   1.12	[1.00-1.24] 	Illumina [308,846]	N
03/03/2009	19151714	Meyre D	01/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19151714?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry obese adults, 731 European ancestry lean adults, 685 European ancestry obese children, 685 European ancestry lean children	1,171 European ancestry obese adults, 1,114 European ancestry lean adults, 4,417 European ancestry adults, 856 European ancestry obese children, European ancestry 1,297 lean children and young adults, 5,291 European ancestry children 	10p13	10	16257952	PTER	FTLP19 - PTER	100873960	9317		      186.14	      178.99	rs10508503-C	rs10508503	0	10508503	Intergenic	1	0.91	2E-7	6.698970004336019	(children)	   1.56	[1.10-2.78] 	Illumina [308,846]	N
02/11/2014	19151717	Rafnar T	01/18/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19151717	Sequence variants at the TERT-CLPTM1L locus associate with many cancer types.	Basal cell carcinoma 	1,505 European ancestry cases, 28,890 European ancestry controls	1,060 European ancestry cases, 515 European ancestry controls 	5p15.33	5	1321972	CLPTM1L, TERT	CLPTM1L			81037			rs401681-C	rs401681	0	401681	intron	0	0.56	4E-12	11.39794000867204		   1.25	[1.18-1.34] 	Illumina [302,140]	N
01/21/2009	19148276	Tanaka T	01/16/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19148276?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of plasma polyunsaturated fatty acids in the InCHIANTI Study.	Polyunsaturated fatty acid levels	1,075 European ancestry individuals	1,076 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [495,343]	N
02/27/2009	19136949	Carrasquillo MM	01/11/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19136949?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer's disease.	Alzheimer's disease	844 European ancestry cases, 1,255 European ancestry controls	1,547 European ancestry cases, 1,209 European ancestry controls	Xq21.31	23	92147221	PCDH11X	PCDH11X			27328			rs2573905-?	rs2573905	0	2573905	intron	0	0.46	2E-7	6.698970004336019		   1.29	[1.17-1.42] 	Illumina [313,504]	N
01/21/2009	19132087	Burgner D	01/09/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19132087?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel and functionally related susceptibility Loci for Kawasaki disease.	Kawasaki disease	107 European ancestry cases, 134 European ancestry controls	583 European ancestry cases, 1,357 European ancestry controls from 583 families	3q26.31	3	175175985	NAALADL2	NAALADL2			254827			rs17531088-T	rs17531088	0	17531088	intron	0	0.44	1E-6	5.999999999999999		   1.43	[1.32-1.53] 	Affymetrix [223,922]	N
01/21/2009	19132087	Burgner D	01/09/2009	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19132087?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel and functionally related susceptibility Loci for Kawasaki disease.	Kawasaki disease	107 European ancestry cases, 134 European ancestry controls	583 European ancestry cases, 1,357 European ancestry controls from 583 families	16q22.3	16	72975125	ZFHX3	ZFHX3			463			rs7199343-T	rs7199343	0	7199343	intron	0	0.30	2E-6	5.698970004336018		   1.56	[1.33-1.92] 	Affymetrix [223,922]	N
02/25/2009	19125160	Feulner TM	01/07/2009	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19125160?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Examination of the current top candidate genes for AD in a genome-wide association study.	Alzheimer's disease	491 European ancestry cases, 479 European ancestry controls	NA	19q13.32	19	44892009	TOMM40, APOE	TOMM40			10452			rs157580-?	rs157580	0	157580	intron	0	NR	1E-40	40		NR	NR	Illumina [~550,000]	N
01/21/2009	19124843	Ober C	01/07/2009	J Lipid Res	http://www.ncbi.nlm.nih.gov/pubmed/19124843?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of plasma lipoprotein(a) levels identifies multiple genes on chromosome 6q.	Lp (a) levels	357 Hutterite individuals	1,054 European ancestry males	6q25.3	6	160539327	LPA	LPA			4018			rs6919346-?	rs6919346	0	6919346	intron	0	0.16	4E-11	10.39794000867204		    .66	[mg/dl decrease] 	Affymetrix [290,327]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	1p36.13	1	19816373	RNF186	RNF186			54546			rs3806308-?	rs3806308	0	3806308	nearGene-5	0	0.63	7E-9	8.154901959985743		   1.28	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	1p36.13	1	19845367	OTUD3, PLA2G2E	RNF186 - OTUD3	54546	23252		       30.09	       36.50	rs6426833-G	rs6426833	0	6426833	Intergenic	1	0.54	5E-13	12.30102999566398		   1.37	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	1p31.3	1	67259437	IL23R	IL23R			149233			rs10889677-A	rs10889677	0	10889677	UTR-3	0	0.30	1E-8	8		   1.29	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-?	rs11209026	0	11209026	missense	0	0.93	1E-8	8		   1.79	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	6p21.32	6	32465390	BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB1, HLA-DQA1, HLA-DQB1	TRNAI25			100189401			rs2395185-?	rs2395185	0	2395185		0	0.67	1E-16	16		   1.52	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	12q15	12	68110812	IFNG, IL26, IL22	HNRNPA1P70 - IFNG	341333	3458		       74.04	       43.96	rs1558744-A	rs1558744	0	1558744	Intergenic	1	0.38	3E-12	11.52287874528034		   1.35	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	12q15	12	68202881	IL26	IL26			55801			rs2870946-G	rs2870946	0	2870946	intron	0	0.055	5E-7	6.30102999566398		   1.54	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	9q21.32	9	82696232	Intergenic	RPS2P34 - RPS6P12	442426	100270867		      564.57	       47.82	rs668853-G	rs668853	0	668853	Intergenic	1	0.39	2E-6	5.698970004336018		   1.20	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	7	107862996	SLC26A3, DLD, LAMB1	PIGCP2 - DLD	100128307	1738		       53.40	       28.15	rs4598195-?	rs4598195	0	4598195	Intergenic	1	0.54	1E-6	5.999999999999999		   1.23	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	7	107839074	Intergenic	PIGCP2 - DLD	100128307	1738		       29.48	       52.07	rs4730273-?	rs4730273	0	4730273	Intergenic	1	0.70	5E-6	5.301029995663981		   1.22	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	7	107843992	SLC26A3, DLD, LAMB1	PIGCP2 - DLD	100128307	1738		       34.40	       47.15	rs4730276-?	rs4730276	0	4730276	Intergenic	1	0.39	9E-6	5.045757490560675		   1.22	 	Illumina [280,748]	N
01/21/2009	19122664	Silverberg MS	01/04/2009	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19122664?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	7q31.1	7	107940394	SLC26A3, DLD, LAMB1	LAMB1			3912			rs2158836-A	rs2158836	0	2158836	intron	0	0.35	7E-6	5.154901959985742		   1.21	 	Illumina [280,748]	N
01/21/2009	19118814	Beecham GW	01/03/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19118814?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study implicates a chromosome 12 risk locus for late-onset Alzheimer disease.	Alzheimer's disease	492 European ancestry cases, 496 European ancestry controls	238 European ancestry cases, 220 European ancestry controls	12q13.11	12	47245743	FAM113B	PCED1B-AS1 - MIR4494	100233209	100616478		       29.30	      118.44	rs11610206-?	rs11610206	0	11610206	Intergenic	1	NR	3E-7	6.522878745280337		NR	NR	Illumina [~2.5 million] (imputed)	N
01/21/2009	19118814	Beecham GW	01/03/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19118814?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study implicates a chromosome 12 risk locus for late-onset Alzheimer disease.	Alzheimer's disease	492 European ancestry cases, 496 European ancestry controls	238 European ancestry cases, 220 European ancestry controls	1q42.2	1	231708601	DISC1	DISC1;TSNAX-DISC1			27185;100303453			rs12044355-?	rs12044355	0	12044355	intron;intron	0	NR	9E-6	5.045757490560675		NR	NR	Illumina [~2.5 million] (imputed)	N
01/21/2009	19118814	Beecham GW	01/03/2009	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19118814?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study implicates a chromosome 12 risk locus for late-onset Alzheimer disease.	Alzheimer's disease	492 European ancestry cases, 496 European ancestry controls	238 European ancestry cases, 220 European ancestry controls	19q13.31	19	44110055	ZNF224	ZNF224;LOC100379224			7767;100379224			rs2061333-?	rs2061333	0	2061333	nearGene-3;intron	0	NR	2E-6	5.698970004336018		NR	NR	Illumina [~2.5 million] (imputed)	N
02/27/2009	19116933	Hinks A	01/01/2009	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/19116933?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis.	Arthritis (juvenile idiopathic)	279 European ancestry cases, 184 European ancestry controls	up to 654 European ancestry cases, 2,024 European ancestry controls	1p13.1	1	117208743	VTCN1	VTCN1			79679			rs12046117-?	rs12046117	0	12046117	intron	0	0.09	1E-6	5.999999999999999		   1.58	[1.29-1.94] 	Affymetrix [88,862]	N
01/16/2009	19115949	Limou S	01/01/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19115949?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	6	31464003	HCP5, MICB, MCCD1, BAT1, LTB, TNF	HCP5			10866			rs2395029-G	rs2395029	0	2395029	ncRNA	0	0.03	3E-19	18.52287874528033		   3.47	[2.39-5.04] 	Illumina [291,119]	N
01/16/2009	19115949	Limou S	01/01/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19115949?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p21.33	6	31306778	HLA-C	TRNAI25			100189401			rs10484554-T	rs10484554	0	10484554		0	0.13	6E-8	7.221848749616355		NR	NR	Illumina [291,119]	N
01/16/2009	19115949	Limou S	01/01/2009	J Infect Dis	http://www.ncbi.nlm.nih.gov/pubmed/19115949?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).	AIDS progression	275 European ancestry seropositive non-progressors, 86 European ancestry seropositive rapid progressors, 1,352 European ancestry seronegative controls	(see Fellay 2007)	6p22.1	6	30064745	ZNRD1, RNF39	PPP1R11;ZNRD1			6992;30834			rs8321-G	rs8321	0	8321	nearGene-5;ncRNA	0	NR	5E-7	6.30102999566398		NR	NR	Illumina [291,119]	N
02/26/2009	19117981	Sun J	01/01/2009	Cancer Res	http://www.ncbi.nlm.nih.gov/pubmed/19117981?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Sequence variants at 22q13 are associated with prostate cancer risk.	Prostate cancer	1,235 European ancestry aggressive cases, 1,599 European ancestry controls	1,215 European ancestry aggressive cases, 2,213 European ancestry non-aggressive cases, 1,208 European ancestry controls, 1,034 aggressive cases, 921 non-aggressive cases, 2,231 controls	22q13.1	22	40056115	TNRC6B	TNRC6B			23112			rs9623117-C	rs9623117	0	9623117	intron	0	0.21	5E-7	6.30102999566398		   1.18	[1.11-1.26] 	Affymetrix and Illumina [~2 million] (imputed)	N
01/14/2009	19114987	Zhang D	12/31/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19114987?ordinalpos=17&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Singleton deletions throughout the genome increase risk of bipolar disorder.	Bipolar disorder	998 European ancestry cases, 1,001 European ancestry controls	NA	Pending			Pending	 - 						Pending	Pending					Pending	Pending		Pending	Pending	Pending	Affymetrix [51,757 CNVs]	Y
01/14/2009	19114657	Wang Y	12/29/2008	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/19114657?ordinalpos=13&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	From the Cover: Whole-genome association study identifies STK39 as a hypertension susceptibility gene.	Blood pressure	542 Old Order Amish individuals	5,229 European ancestry individuals, 1,347 Amish individuals, 575 Hutterite individuals	2q24.3	2	168184876	STK39	STK39			27347			rs6749447-G	rs6749447	0	6749447	intron	0	0.28	2E-7	6.698970004336019		   1.90	[1.2-2.6] mm Hg increase in DBP	Affymetrix [79,447]	N
01/14/2009	19110211	Meisinger C	12/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19110211?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study identifies three loci associated with mean platelet volume.	Mean platelet volume	1,606 European ancestry individuals	8,617 European ancestry individuals	3p14.3	3	56831748	ARHGEF3	ARHGEF3			50650			rs12485738-A	rs12485738	0	12485738	intron	0	0.30	4E-27	26.39794000867203		    .02	[0.01-0.02] per log fl increase	Affymetrix [335,152]	N
01/14/2009	19110211	Meisinger C	12/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19110211?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study identifies three loci associated with mean platelet volume.	Mean platelet volume	1,606 European ancestry individuals	8,617 European ancestry individuals	12q24.31	12	121927677	WDR66	WDR66			144406			rs7961894-A	rs7961894	0	7961894	intron	0	0.11	7E-48	47.15490195998574		    .03	[0.03-0.04] per log fl increase	Affymetrix [335,152]	N
01/14/2009	19110211	Meisinger C	12/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19110211?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study identifies three loci associated with mean platelet volume.	Mean platelet volume	1,606 European ancestry individuals	8,617 European ancestry individuals	17q11.2	17	29376331	TAOK1	RPL35AP35 - MIR4523	100271636	100616122		       35.46	       14.33	rs2138852-C	rs2138852	0	2138852	Intergenic	1	0.47	7E-28	27.15490195998574		    .02	[0.01-0.02] per log fl decrease	Affymetrix [335,152]	N
02/04/2009	19107115	Muglia P	12/23/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19107115?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association study of recurrent major depressive disorder in two European case-control cohorts.	Major depressive disorder	1,359 European ancestry cases, 1,782 European ancestry controls	NA	12p13.32	12	4009151	CCND2	OTUD4P1 - HSPA8P5	360227	399988		      162.88	       88.22	rs4238010-G	rs4238010	0	4238010	Intergenic	1	0.02	6E-6	5.221848749616356		   1.72	 	Illumina and Affymetrix [494,678] (imputed)	N
06/22/2009	19096518	Pare G	12/19/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19096518	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry women	455 European ancestry individuals	10q22.1	10	69340157	HK1	HK1			3098			rs7072268-A	rs7072268	0	7072268	intron	0	0.50	2E-25	24.69897000433602		    .05	[NR] % increase	Illumina [337,343]	N
06/22/2009	19096518	Pare G	12/19/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19096518	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry women	455 European ancestry individuals	2q31.1	2	168900844	G6PC2	G6PC2			57818			rs1402837-A	rs1402837	0	1402837	nearGene-5	0	0.23	5E-10	9.301029995663981		    .02	[NR] % increase	Illumina [337,343]	N
06/22/2009	19096518	Pare G	12/19/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19096518	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry women	455 European ancestry individuals	7p13	7	44184122	GCK	GCK			2645			rs730497-A	rs730497	0	730497	intron	0	0.17	6E-12	11.22184874961635		    .03	[NR] % increase	Illumina [337,343]	N
06/22/2009	19096518	Pare G	12/19/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19096518	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry women	455 European ancestry individuals	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-A	rs13266634	0	13266634	missense	0	0.30	5E-8	7.30102999566398		    .02	[NR] % decrease	Illumina [337,343]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	411 European ancestry individuals from 150 families	NA	3q22.1	3	133789620	TF	SRPRB			58477			rs1830084-A	rs1830084	0	1830084	intron	0	0.36	1E-9	8.999999999999998	(serum transferrin)	    .43	[NR] s.d. increase	Affymetrix [100,846]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	411 European ancestry individuals from 150 families	NA	14q23.2	14	62187980	Q6ZUR9	LINC00644 - ATP5A1P4	101954204	100129782		       48.01	      416.13	rs973968-?	rs973968	0	973968	Intergenic	1	NR	3E-6	5.522878745280337	(transferrin saturation)	NR	NR	Affymetrix [100,846]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	411 European ancestry individuals from 150 families	NA	6q22.33	6	127070699	RSPO3	RPS4XP9 - RSPO3	442257	84870		      386.79	       48.00	rs972275-?	rs972275	0	972275	Intergenic	1	NR	2E-6	5.698970004336018	(serum ferritin)	NR	NR	Affymetrix [100,846]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	22q12.3	22	37073551	TMPRSS6	TMPRSS6			164656			rs4820268-?	rs4820268	0	4820268	cds-synon	0	NR	6E-6	5.221848749616356	(serum iron)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	25488355	LRRC16A	LRRC16A			55604			rs2274089-?	rs2274089	0	2274089	intron	0	NR	5E-6	5.301029995663981	(serum iron)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	3	133765185	TF	TF			7018			rs3811647-?	rs3811647	0	3811647	intron	0	NR	3E-15	14.52287874528034	(serum transferrin)	    .46	[0.34-0.58] s.d. decrease	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-?	rs1800562	0	1800562	missense	0	NR	1E-10	10	(serum transferrin)	    .68	[0.48-0.88] s.d. decrease	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	25488355	LRRC16	LRRC16A			55604			rs2274089-?	rs2274089	0	2274089	intron	0	NR	3E-7	6.522878745280337	(serum transferrin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	3	133680858	TOPBP1	TOPBP1 - TFP1	11073	100129696		       18.94	       10.86	rs2718812-?	rs2718812	0	2718812	Intergenic	1	NR	1E-6	5.999999999999999	(serum transferrin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	Xq24	23	117954093	KLHL13	KLHL13			90293			rs2430212-?	rs2430212	0	2430212	intron	0	NR	2E-6	5.698970004336018	(serum transferrin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	3	133691817	TF	TFP1			100129696			rs1867504-?	rs1867504	0	1867504		0	NR	2E-6	5.698970004336018	(serum transferrin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-?	rs1800562	0	1800562	missense	0	NR	4E-15	14.39794000867204	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.1	6	27069301	HIST1H2BJ	TRNAI25			100189401			rs13194491-?	rs13194491	0	13194491		0	NR	1E-8	8	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	26500335	BTN1A1	BTN1A1			696			rs13194984-?	rs13194984	0	13194984	nearGene-5	0	NR	6E-8	7.221848749616355	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	25820211	SLC17A1	SLC17A1			6568			rs17270561-?	rs17270561	0	17270561	intron	0	NR	5E-7	6.30102999566398	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	25488355	LRRC16	LRRC16A			55604			rs2274089-?	rs2274089	0	2274089	intron	0	NR	8E-7	6.096910013008056	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	2p14	2	65635244	Q6ZNG6	RPS15AP15 - KRT18P33	100130782	647162		      123.10	       31.18	rs1457451-?	rs1457451	0	1457451	Intergenic	1	NR	3E-6	5.522878745280337	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	25997230	TRIM38	TRIM38 - HIST1H1PS2	10475	10338		        9.90	       18.88	rs12216125-?	rs12216125	0	12216125	Intergenic	1	NR	4E-6	5.397940008672037	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	5p13.1	5	42473453	GHR	GHR			2690			rs13188386-?	rs13188386	0	13188386	intron	0	NR	8E-6	5.096910013008055	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	25640972	SCGN	LRRC16A - SCGN	55604	10590		       20.44	       11.23	rs932316-?	rs932316	0	932316	Intergenic	1	NR	9E-6	5.045757490560675	(transferrin saturation)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6q25.3	6	159716655	WTAP	HNRNPH1P1 - WTAP	100132803	9589		        2.67	       10.34	rs4516970-?	rs4516970	0	4516970	Intergenic	1	NR	1E-6	5.999999999999999	(serum ferritin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	7p14.1	7	40914882	Q4KMW4	SUGCT - INHBA	79783	3624		       54.12	      774.12	rs29880-?	rs29880	0	29880	Intergenic	1	NR	7E-6	5.154901959985742	(serum ferritin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	5q14.1	5	78977119	ARSB	ARSB			411			rs2052550-?	rs2052550	0	2052550	intron	0	NR	8E-6	5.096910013008055	(serum ferritin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	18q22.2	18	70960842	Intergenic	GTSCR1 - CBLN2	220158	147381		      309.99	     1575.84	rs2660917-?	rs2660917	0	2660917	Intergenic	1	NR	8E-6	5.096910013008055	(serum ferritin)	NR	NR	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	6p22.2	6	26092913	HFE	HFE			3077			rs1800562-?	rs1800562	0	1800562	missense	0	NR	4E-11	10.39794000867204	(serum iron)	    .66	[0.46-0.86] s.d. increase	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	3	133756878	TF	TF			7018			rs1799852-?	rs1799852	0	1799852	cds-synon	0	0.09	5E-6	5.301029995663981	(serum transferrin)	    .43	[0.25-0.61] s.d. decrease	Illumina [315,887]	N
01/14/2009	19084217	Benyamin B	12/17/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19084217?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	11p14.3	11	24828020	LUZP2	LUZP2			338645			rs10500991-?	rs10500991	0	10500991	intron	0	NR	2E-6	5.698970004336018	(serum transferrin)	NR	NR	Illumina [315,887]	N
01/14/2009	19074352	Pollin TI	12/17/2008	Science	http://www.ncbi.nlm.nih.gov/pubmed/19074352?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A null mutation in human APOC3 confers a favorable plasma lipid profile and apparent cardioprotection.	Triglycerides	809 Old Order Amish individuals	698 Old Order Amish individuals	11q23.3	11	117661016	APOA1, APOC3, APOA4, APOA5, DSCAML1	DSCAML1			57453			rs10892151-A	rs10892151	0	10892151	intron	0	0.028	3E-29	28.52287874528033		NR	NR	Affymetrix [381,934]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	1p36.12	1	22371954	Intergenic	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-A	rs7524102	0	7524102	Intergenic	1	0.82	1E-16	16		    .15	[0.11-0.18] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	6q25.1	6	151612040	ESR1	CCDC170			80129			rs1038304-G	rs1038304	0	1038304	intron	0	0.47	4E-10	9.397940008672037		    .08	[0.06-0.11] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	2q12.1	2	103153780	NR	TMEM182 - AHCYP3	130827	402093		      309.94	     1241.22	rs6735786-C	rs6735786	0	6735786	Intergenic	1	0.64	2E-6	5.698970004336018		    .07	[0.04-0.09] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	17q21.31	17	43729963	SOST	WHSC1L2P - SOST	100128016	50964		        9.53	       23.77	rs1513670-A	rs1513670	0	1513670	Intergenic	1	0.37	2E-8	7.698970004336018		    .08	[0.05-0.10] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	Xq21.2	23	86937000	NR	COPS8P1 - KLHL4	260342	56062		      137.77	      580.71	rs2710057-T	rs2710057	0	2710057	Intergenic	1	0.67	1E-6	5.999999999999999		    .07	[0.04-0.09] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	11p11.2	11	46827809	LRP4	CKAP5			9793			rs1007738-A	rs1007738	0	1007738	intron	0	0.77	7E-7	6.154901959985743		    .08	[0.05-0.11] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	3p22.1	3	41082244	NR	RPS27P4 - MRPS31P1	389112	351449		      320.39	      106.79	rs10490823-G	rs10490823	0	10490823	Intergenic	1	0.46	9E-6	5.045757490560675		    .06	[0.03-0.09] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	17q21.31	17	44148179	C17orf53	C17orf53			78995			rs227584-T	rs227584	0	227584	missense	0	0.73	9E-7	6.045757490560675		    .07	[0.04-0.10] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	13q14.11	13	42458457	RANKL	FABP3P2 - TNFSF11	56677	8600		       88.70	      104.28	rs9594759-T	rs9594759	0	9594759	Intergenic	1	0.62	2E-17	16.69897000433602		    .12	[0.09-0.15] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	12q13.13	12	53338107	SP7	SP7			121340			rs10876432-A	rs10876432	0	10876432	nearGene-5	0	0.73	1E-7	7		    .08	[0.05-0.11] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	21q11.2	21	14472731	NR	HSPA13 - SAMSN1	6782	64092		       89.54	       12.50	rs1006899-A	rs1006899	0	1006899	Intergenic	1	0.84	6E-6	5.221848749616356		    .09	[0.05-0.13] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	1p36.12	1	22376365	Intergenic	MIR4418 - ZBTB40	100616433	9923		      110.07	       75.49	rs6696981-G	rs6696981	0	6696981	Intergenic	1	0.86	2E-8	7.698970004336018		    .12	[0.08-0.16] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	2p16.2	2	54457420	SPTBN1	SPTBN1			6711			rs11898505-G	rs11898505	0	11898505	intron	0	0.68	4E-6	5.397940008672037		    .07	[0.04-0.10] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	6q25.1	6	151615542	C6orf97, ESR1	CCDC170			80129			rs6929137-A	rs6929137	0	6929137	missense	0	0.30	2E-10	9.698970004336017		    .10	[0.07-0.13] s.d. decrease	Illumina [305,051]	N
01/16/2009	19079262	Styrkarsdottir U	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079262?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	2p22.2	2	37817201	LOC344382	LOC344382			344382			rs4670779-T	rs4670779	0	4670779		0	0.32	4E-6	5.397940008672037		    .07	[0.04-0.10] s.d. decrease	Illumina [305,051]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p31.1	1	72299433	NEGR1	GDI2P2 - RPL31P12	100420259	100270887		       24.28	        2.01	rs2568958-A	rs2568958	0	2568958	Intergenic	1	0.58	1E-11	11		   3.77	[2.67-4.87] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1q25.2	1	177944384	SEC16B, RASAL2	SEC16B			89866			rs10913469-C	rs10913469	0	10913469	intron	0	0.20	6E-8	7.221848749616355		   3.36	[2.14-4.58] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	2p25.3	2	644953	TMEM18	FAM150B - TMEM18	285016	129787		      356.09	       23.02	rs7561317-G	rs7561317	0	7561317	Intergenic	1	0.84	4E-17	16.39794000867203		   6.12	[4.69-7.55] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	3q27.2	3	186116501	SFRS10, ETV5, DGKG	ETV5 - DGKG	2119	1608		        7.39	       30.70	rs7647305-C	rs7647305	0	7647305	Intergenic	1	0.77	7E-11	10.15490195998574		   4.42	[3.09-5.75] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	11	27561582	BDNF	BDNF-AS			497258			rs7481311-T	rs7481311	0	7481311	intron	0	0.24	8E-6	5.096910013008055		   3.15	[1.78-4.52] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	11	27645655	BDNF	BDNF-AS			497258			rs925946-T	rs925946	0	925946	intron	0	0.34	9E-10	9.045757490560675		   3.85	[2.62-5.08] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	11	27658369	BDNF	BDNF;BDNF-AS			627;497258			rs6265-G	rs6265	0	6265	missense;ncRNA	0	0.85	5E-10	9.301029995663981		   4.58	[3.07-6.09] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	12q13.12	12	49853685	BCDIN3D, FAIM2	BCDIN3D - RPL35AP28	144233	100271637		       10.56	        9.42	rs7138803-A	rs7138803	0	7138803	Intergenic	1	0.37	1E-7	7		   3.28	[2.06-4.50] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16p11.2	16	28871920	SH2B1, ATP2A1	SH2B1			25970			rs7498665-G	rs7498665	0	7498665	missense	0	0.44	3E-10	9.522878745280336		   3.63	[2.49-4.77] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	16	53735765	FTO	FTO			79068			rs6499640-A	rs6499640	0	6499640	intron	0	0.41	4E-13	12.39794000867204		   5.25	[3.82-6.68] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	0.41	1E-47	47		   8.04	[6.96-9.12] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	18q21.32	18	60217517	MC4R	RPS3AP49 - MC4R	400652	4160		       67.11	      153.81	rs12970134-A	rs12970134	0	12970134	Intergenic	1	0.30	1E-12	12		   4.38	[3.16-5.60] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	19q13.11	19	33818627	KCTD15, CHST8	KCTD15 - RPS4XP20	79047	100271386		        2.87	      203.94	rs29941-C	rs29941	0	29941	Intergenic	1	0.69	7E-12	11.15490195998574		   4.18	[2.98-5.38] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p21.3	1	96571527	NR	EEF1A1P11 - NDUFS5P2	440595	100286918		      122.90	       12.88	rs10783050-C	rs10783050	0	10783050	Intergenic	1	0.36	4E-6	5.397940008672037		   2.60	[1.50-3.70] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p31.1	1	72299433	NEGR1	GDI2P2 - RPL31P12	100420259	100270887		       24.28	        2.01	rs2568958-A	rs2568958	0	2568958	Intergenic	1	0.58	2E-8	7.698970004336018		   3.37	[2.19-4.55] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1q25.2	1	177944384	SEC16B, RASAL2	SEC16B			89866			rs10913469-C	rs10913469	0	10913469	intron	0	0.20	1E-8	8		   3.82	[2.51-5.13] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	2p25.3	2	644953	TMEM18	FAM150B - TMEM18	285016	129787		      356.09	       23.02	rs7561317-G	rs7561317	0	7561317	Intergenic	1	0.84	2E-18	17.69897000433602		   6.47	[5.02-7.92] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	3q27.2	3	186116501	SFRS10, ETV5, DGKG	ETV5 - DGKG	2119	1608		        7.39	       30.70	rs7647305-C	rs7647305	0	7647305	Intergenic	1	0.77	4E-9	8.397940008672036		   4.00	[2.67-5.33] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	6p21.33	6	31605179	AIF1, NCR3	TRNAI25			100189401			rs2844479-T	rs2844479	0	2844479		0	0.68	2E-8	7.698970004336018		   3.58	[2.33-4.83] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	11	27561582	BDNF	BDNF-AS			497258			rs7481311-T	rs7481311	0	7481311	intron	0	0.24	3E-6	5.522878745280337		   3.50	[2.03-4.97] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	11	27645655	BDNF	BDNF-AS			497258			rs925946-T	rs925946	0	925946	intron	0	0.34	4E-9	8.397940008672036		   3.80	[2.55-5.05] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	11	27658369	BDNF	BDNF;BDNF-AS			627;497258			rs6265-G	rs6265	0	6265	missense;ncRNA	0	0.85	2E-7	6.698970004336019		   4.00	[2.47-5.53] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	12q13.12	12	49853685	BCDIN3D, FAIM2	BCDIN3D - RPL35AP28	144233	100271637		       10.56	        9.42	rs7138803-A	rs7138803	0	7138803	Intergenic	1	0.37	2E-7	6.698970004336019		   3.27	[2.05-4.49] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	13q12.2	13	27484267	NR	MTIF3 - RNU6-63P	219402	100873768		       33.66	        3.87	rs7336332-G	rs7336332	0	7336332	Intergenic	1	0.15	1E-6	5.999999999999999		   4.01	[2.40-5.62] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16p11.2	16	28871920	SH2B1, ATP2A1	SH2B1			25970			rs7498665-G	rs7498665	0	7498665	missense	0	0.44	1E-9	8.999999999999998		   3.69	[2.51-4.87] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	16	53735765	FTO	FTO			79068			rs6499640-A	rs6499640	0	6499640	intron	0	0.65	6E-14	13.22184874961636		   5.50	[4.07-6.93] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	0.41	5E-36	35.30102999566397		   7.05	[5.95-8.15] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	18q21.32	18	60217517	MC4R	RPS3AP49 - MC4R	400652	4160		       67.11	      153.81	rs12970134-A	rs12970134	0	12970134	Intergenic	1	0.30	5E-13	12.30102999566398		   4.66	[3.41-5.91] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	19q13.11	19	33818627	KCTD15, CHST8	KCTD15 - RPS4XP20	79047	100271386		        2.87	      203.94	rs29941-C	rs29941	0	29941	Intergenic	1	0.69	5E-9	8.301029995663981		   3.73	[2.48-4.98] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	5q23.2	5	123349434	NR	CEP120			153241			rs2115172-A	rs2115172	0	2115172	intron	0	0.57	2E-6	5.698970004336018		   2.71	[1.59-3.83] % SD	Illumina [305,846]	N
01/15/2009	19079260	Thorleifsson G	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079260?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p21.3	1	96478438	NR	EEF1A1P11 - NDUFS5P2	440595	100286918		       29.82	      105.97	rs1973993-C	rs1973993	0	1973993	Intergenic	1	0.63	1E-6	5.999999999999999		   2.71	[1.61-3.81] % SD	Illumina [305,846]	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	16q12.2	16	53786615	FTO	FTO			79068			rs9939609-A	rs9939609	0	9939609	intron	0	0.41	4E-51	50.39794000867204		    .33	[0.27-0.39] kg/m2 increase	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	2p25.3	2	634905	TMEM18	FAM150B - TMEM18	285016	129787		      346.04	       33.07	rs6548238-C	rs6548238	0	6548238	Intergenic	1	0.84	1E-18	18		    .26	[0.19-0.34] kg/m2 increase	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	18q21.32	18	60183864	MC4R	RPS3AP49 - MC4R	400652	4160		       33.46	      187.47	rs17782313-C	rs17782313	0	17782313	Intergenic	1	0.21	5E-18	17.30102999566398		    .20	[0.12-0.28] kg/m2 increase	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	4p12	4	45180510	GNPDA2	PRDX4P1 - PRKRIRP9	100418949	100131309		      235.51	      142.74	rs10938397-G	rs10938397	0	10938397	Intergenic	1	0.45	3E-16	15.52287874528034		    .19	[0.13-0.25] kg/m2	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	16p11.2	16	28871920	SH2B1	SH2B1			25970			rs7498665-G	rs7498665	0	7498665	missense	0	0.41	5E-11	10.30102999566398		    .15	[0.08-0.21] kg/m2 increase	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	11p11.2	11	47641497	MTCH2	MTCH2			23788			rs10838738-G	rs10838738	0	10838738	intron	0	0.34	5E-9	8.301029995663981		    .07	[0.01-0.13] kg/m2 increase	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	19q13.11	19	33831232	KCTD15	KCTD15 - RPS4XP20	79047	100271386		       15.47	      191.33	rs11084753-G	rs11084753	0	11084753	Intergenic	1	0.67	2E-8	7.698970004336018		    .06	[-0.01-0.13] kg/m2 increase	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	1p31.1	1	72346757	NEGR1	RPL31P12 - KRT8P21	100270887	126811		       44.89	      758.02	rs2815752-A	rs2815752	0	2815752	Intergenic	1	0.62	6E-8	7.221848749616355		    .10	[0.04-0.16] kg/m2 increase	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	11p15.4	11	8462542	STK33	STK33			65975			rs10769908-C	rs10769908	0	10769908	intron	0	0.53	1E-6	5.999999999999999		NR	NR	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	20p12.3	20	6641038	BMP2	CASC20 - BMP2	101929244	650		      112.58	      127.06	rs2145270-T	rs2145270	0	2145270	Intergenic	1	0.65	6E-6	5.221848749616356		NR	NR	Illumina and Affymetrix[2,399,588](imputed)	N
01/12/2009	19079261	Willer CJ	12/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19079261?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	15q25.2	15	82059859	RKHD3	MEX3B - EFTUD1	84206	79631		       13.72	       70.36	rs12324805-C	rs12324805	0	12324805	Intergenic	1	0.31	7E-6	5.154901959985742		NR	NR	Illumina and Affymetrix[2,399,588](imputed)	N
02/05/2009	19081515	Mead S	12/11/2008	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/19081515?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic risk factors for variant Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease	117 European ancestry cases, 3,083 European ancestry controls	2 European ancestry vCJD cases, 506 Oceania ancestry sCJD cases, 28 Oceania ancestry iCJD cases, 151 Oceania ancestry Kuru cases, 125 Oceania ancestry Kuru resistant cases, 3,608 European ancestry controls, 562 Oceania ancestry controls	20p13	20	4699605	PRNP	PRNP			5621			rs1799990-A	rs1799990	0	1799990	missense	0	NR	2E-21	20.69897000433602		NR	NR	Affymetrix [288,908]	N
02/05/2009	19081515	Mead S	12/11/2008	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/19081515?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genetic risk factors for variant Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease	117 European ancestry cases, 3,083 European ancestry controls	2 European ancestry vCJD cases, 506 Oceania ancestry sCJD cases, 28 Oceania ancestry iCJD cases, 151 Oceania ancestry Kuru cases, 125 Oceania ancestry Kuru resistant cases, 3,608 European ancestry controls, 562 Oceania ancestry controls	8q21.13	8	79315213	STMN2	PRKRIRP7 - RPL3P9	100422712	100128963		      552.78	      255.88	rs1460163-A	rs1460163	0	1460163	Intergenic	1	NR	6E-8	7.221848749616355		NR	NR	Affymetrix [288,908]	N
01/06/2009	19065144	Sullivan PF	12/09/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/19065144?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association for major depressive disorder: a possible role for the presynaptic protein piccolo.	Major depressive disorder	1,738 European ancestry cases, 1,802 European ancestry controls	6,079 European ancestry cases, 5,893 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Perlegen [435,291]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	1p36.11	1	25442446	TMEM57	TMEM57			55219			rs10903129-G	rs10903129	0	10903129	intron	0	0.54	5E-10	9.301029995663981		    .06	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	2p21	2	43837951	ABCG5	ABCG5;ABCG8			64240;64241			rs6756629-G	rs6756629	0	6756629	missense;nearGene-5	0	0.92	2E-11	10.69897000433602		    .15	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	1p31.3	1	62652525	DOCK7	DOCK7			85440			rs10889353-C	rs10889353	0	10889353	intron	0	0.32	4E-12	11.39794000867204		    .08	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	1p13.3	1	109275908	CELSR2	CELSR2			1952			rs646776-G	rs646776	0	646776	nearGene-3	0	0.22	9E-22	21.04575749056067		    .13	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	11q12.2	11	61829740	FADS2, FADS3	FADS2			9415			rs174570-G	rs174570	0	174570	intron	0	0.83	2E-10	9.698970004336017		    .09	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	2p24.1	2	21009323	APOB	APOB			338			rs693-G	rs693	0	693	cds-synon	0	0.52	9E-23	22.04575749056067		    .10	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	5q13.3	5	75355259	HMGCR	HMGCR			3156			rs3846662-G	rs3846662	0	3846662	intron	0	0.44	3E-19	18.52287874528033		    .09	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	7p15.3	7	21567734	DNAH11	DNAH11			8701			rs12670798-G	rs12670798	0	12670798	intron	0	0.24	9E-7	6.045757490560675		    .06	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	8q24.13	8	125492484	TRIB1	TRIB1 - LINC00861	10221	100130231		       54.08	      430.04	rs6987702-G	rs6987702	0	6987702	Intergenic	1	0.29	3E-9	8.522878745280337		    .07	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	11q23.3	11	116733008	APOA1, APOA4, APOA5, APOC3	RPL15P15 - BUD13	100128347	84811		      782.21	       15.16	rs12272004-C	rs12272004	0	12272004	Intergenic	1	0.93	7E-7	6.154901959985743		    .11	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-G	rs1532085	0	1532085	intron	0	0.59	4E-7	6.397940008672037		    .05	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-G	rs4939883	0	4939883	Intergenic	1	0.83	2E-11	10.69897000433602		    .07	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	19p13.2	19	11100236	LDLR	LDLR			3949			rs2228671-G	rs2228671	0	2228671	cds-synon	0	0.88	9E-24	23.04575749056067		    .16	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	19p13.11	19	19678719	NCAN	ZNF101			94039			rs2304130-G	rs2304130	0	2304130	intron	0	0.07	2E-15	14.69897000433602		    .15	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	19q13.32	19	44892362	TOMM40, APOE	TOMM40			10452			rs2075650-G	rs2075650	0	2075650	intron	0	0.15	3E-19	18.52287874528033		    .14	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	11p11.2	11	48497341	MADD, FOLH1	OR4A46P - OR4A40P	403252	390116		         .08	       14.98	rs7395662-G	rs7395662	0	7395662	Intergenic	1	0.61	6E-11	10.22184874961635		    .07	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	16q22.1	16	67868167	CTCF, PRMT8	NUTF2			10204			rs2271293-G	rs2271293	0	2271293	intron	0	0.87	8E-16	15.09691001300805		    .13	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	2p24.1	2	20983311	APOB	C2orf43 - APOB	60526	338		      160.18	       18.12	rs6754295-C	rs6754295	0	6754295	Intergenic	1	0.25	4E-8	7.397940008672037		    .07	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	8p21.3	8	20007664	LPL	LPL - RPL30P9	4023	100270981		       40.41	      105.67	rs2083637-G	rs2083637	0	2083637	Intergenic	1	0.26	6E-18	17.22184874961635		    .11	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	9q31.1	9	104894789	ABCA1	ABCA1			19			rs3905000-G	rs3905000	0	3905000	intron	0	0.86	9E-13	12.04575749056067		    .11	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	11q12.2	11	61829740	FADS2, FADS3	FADS2			9415			rs174570-G	rs174570	0	174570	intron	0	0.83	4E-6	5.397940008672037		    .06	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-G	rs1532085	0	1532085	intron	0	0.59	1E-35	35		    .13	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	16q13	16	56971567	CETP	CETP			1071			rs1532624-C	rs1532624	0	1532624	intron	0	0.57	9E-94	93.04575749056066		    .21	[NR] s.d. decrease	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-G	rs4939883	0	4939883	Intergenic	1	0.83	2E-11	10.69897000433602		    .10	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	19q13.32	19	44892009	TOMM40, APOE	TOMM40			10452			rs157580-G	rs157580	0	157580	intron	0	0.33	4E-7	6.397940008672037		    .06	[NR] s.d. increase	Illumina and Affymetrix [up to ~600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	7p15.3	7	21567734	DNAH11	DNAH11			8701			rs12670798-G	rs12670798	0	12670798	intron	0	0.24	6E-9	8.221848749616356		    .09	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	2p21	2	43837951	ABCG5	ABCG5;ABCG8			64240;64241			rs6756629-G	rs6756629	0	6756629	missense;nearGene-5	0	0.92	3E-10	9.522878745280336		    .16	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	11q12.2	11	61829740	FADS2, FADS3	FADS2			9415			rs174570-G	rs174570	0	174570	intron	0	0.83	4E-13	12.39794000867204		    .11	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	1p31.3	1	62652525	DOCK7	DOCK7			85440			rs10889353-C	rs10889353	0	10889353	intron	0	0.32	8E-6	5.096910013008055		    .06	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	1p13.3	1	109275908	CELSR2	CELSR2			1952			rs646776-G	rs646776	0	646776	nearGene-3	0	0.22	8E-23	22.09691001300806		    .16	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	2p24.1	2	21009323	APOB	APOB			338			rs693-G	rs693	0	693	cds-synon	0	0.52	4E-17	16.39794000867203		    .10	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	5q13.3	5	75355259	HMGCR	HMGCR			3156			rs3846662-G	rs3846662	0	3846662	intron	0	0.44	2E-11	10.69897000433602		    .08	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	8q24.13	8	125492484	TRIB1	TRIB1 - LINC00861	10221	100130231		       54.08	      430.04	rs6987702-G	rs6987702	0	6987702	Intergenic	1	0.29	3E-6	5.522878745280337		    .07	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	11q23.3	11	116733008	APOA1, APOA4, APOA5, APOC3	RPL15P15 - BUD13	100128347	84811		      782.21	       15.16	rs12272004-C	rs12272004	0	12272004	Intergenic	1	0.93	5E-13	12.30102999566398		    .18	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	19p13.2	19	11100236	LDLR	LDLR			3949			rs2228671-G	rs2228671	0	2228671	cds-synon	0	0.88	4E-14	13.39794000867204		    .14	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	19p13.11	19	19678719	NCAN	ZNF101			94039			rs2304130-G	rs2304130	0	2304130	intron	0	0.07	3E-6	5.522878745280337		    .12	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	19q13.32	19	44892009	TOMM40, APOE	TOMM40			10452			rs157580-G	rs157580	0	157580	intron	0	0.33	2E-19	18.69897000433602		    .11	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	1p31.3	1	62465961	DOCK7	DOCK7			85440			rs1167998-C	rs1167998	0	1167998	intron	0	0.32	2E-12	11.69897000433602		    .09	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	2p24.1	2	20983311	APOB	C2orf43 - APOB	60526	338		      160.18	       18.12	rs6754295-C	rs6754295	0	6754295	Intergenic	1	0.25	3E-8	7.522878745280337		    .08	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-G	rs780094	0	780094	intron	0	0.63	3E-20	19.52287874528034		    .10	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	8p21.3	8	19973410	LPL	LPL - RPL30P9	4023	100270981		        6.15	      139.93	rs10096633-G	rs10096633	0	10096633	Intergenic	1	0.88	2E-18	17.69897000433602		    .17	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	19q13.32	19	44911194	TOMM40, APOE	APOE - APOC1	348	341		        1.80	        3.13	rs439401-G	rs439401	0	439401	Intergenic	1	0.68	2E-9	8.698970004336019		    .09	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	7q11.23	7	73441939	MLXIPL	BAZ1B			9031			rs2240466-G	rs2240466	0	2240466	intron	0	0.87	1E-12	12		    .14	[NR] s.d. increase	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	11q23.3	11	116733008	APOA1, APOA4, APOA5, APOC3	RPL15P15 - BUD13	100128347	84811		      782.21	       15.16	rs12272004-C	rs12272004	0	12272004	Intergenic	1	0.93	5E-13	12.30102999566398		    .18	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/12/2009	19060911	Aulchenko YS	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	19p13.11	19	19678719	NCAN	ZNF101			94039			rs2304130-G	rs2304130	0	2304130	intron	0	0.07	3E-6	5.522878745280337		    .10	[NR] s.d. decrease	Illumina and Affymetrix [up to 600,000]	N
01/07/2009	19060909	Bouatia-Naji N	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060909?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A variant near MTNR1B is associated with increased fasting plasma glucose levels and type 2 diabetes risk.	Fasting plasma glucose	2,151 European ancestry individuals	16,094 European ancestry individuals	11q14.3	11	92940662	MTNR1B	RPS3AP42 - MTNR1B	100271597	4544		      441.70	       28.96	rs1387153-T	rs1387153	0	1387153	Intergenic	1	0.29	2E-36	35.69897000433601		    .07	[0.05-0.08] mmol/l increase	Illumina [308,846]	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q12.2	11	61803311	FADS1, FADS2, FADS3	FADS1			3992			rs174547-C	rs174547	0	174547	intron	0	0.33	2E-12	11.69897000433602		    .09	[0.05-0.13] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	16q22.1	16	67868167	LCAT	NUTF2			10204			rs2271293-A	rs2271293	0	2271293	intron	0	0.11	9E-13	12.04575749056067		    .07	[0.01-0.13] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	9p22.3	9	15289580	TTC39B	TTC39B			158219			rs471364-C	rs471364	0	471364	intron	0	0.12	3E-10	9.522878745280336		    .08	[0.02-0.14] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q13.12	20	44413724	HNF4A	HNF4A			3172			rs1800961-T	rs1800961	0	1800961	missense	0	0.03	8E-10	9.096910013008054		    .19	[0.09-0.29] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q13.12	20	45947863	PLTP	PCIF1			63935			rs7679-C	rs7679	0	7679	UTR-3	0	0.19	4E-9	8.397940008672036		    .07	[0.03-0.11] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.2	19	8404854	ANGPTL4	RAB11B			9230			rs2967605-T	rs2967605	0	2967605	intron	0	0.16	1E-8	8		    .12	[0.04-0.20] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	16q13	16	56954132	CETP	HERPUD1 - CETP	9709	1071		       10.25	        7.79	rs173539-T	rs173539	0	173539	Intergenic	1	0.32	4E-75	74.39794000867202		    .25	[0.21-0.29] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-G	rs12678919	0	12678919	Intergenic	1	0.10	2E-34	33.69897000433602		    .23	[0.17-0.29] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	15q21.3	15	58386313	LIPC	LOC102724766			102724766			rs10468017-T	rs10468017	0	10468017	intron	0	0.30	8E-23	22.09691001300806		    .10	[0.06-0.14] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	18q21.1	18	49640844	LIPG	LIPG - SMUG1P1	9388	100129143		       47.94	        9.51	rs4939883-T	rs4939883	0	4939883	Intergenic	1	0.17	7E-15	14.15490195998574		    .14	[0.10-0.18] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q23.3	11	116778201	APOA1, APOC3, APOA4, APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.14	1E-12	12		    .17	[0.11-0.23] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	12q24.11	12	109457363	MMAB,MVK	KCTD10			83892			rs2338104-C	rs2338104	0	2338104	intron	0	0.45	1E-10	10		    .07	[0.03-0.11] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	9q31.1	9	104902020	ABCA1	ABCA1			19			rs1883025-T	rs1883025	0	1883025	intron	0	0.26	1E-9	8.999999999999998		    .08	[0.04-0.12] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1q42.13	1	230159944	GALNT2	GALNT2			2590			rs4846914-G	rs4846914	0	4846914	intron	0	0.40	4E-8	7.397940008672037		    .05	[0.01-0.09] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p21	2	43846742	ABCG8	ABCG8			64241			rs6544713-T	rs6544713	0	6544713	intron	0	0.32	2E-20	19.69897000433602		    .15	[0.11-0.19] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	5q33.3	5	156971158	TIMD4, HAVCR1	APOOP1 - HAVCR1	100286948	26762		       46.16	       57.82	rs1501908-G	rs1501908	0	1501908	Intergenic	1	0.37	1E-11	11		    .07	[0.03-0.11] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q12	20	40600144	MAFB	LOC102724968			102724968			rs6102059-T	rs6102059	0	6102059	intron	0	0.32	4E-9	8.397940008672036		    .06	[0.03-0.10] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	12q24.31	12	120951159	HNF1A	RPL12P33 - HNF1A-AS1	643550	283460		       33.88	       18.68	rs2650000-A	rs2650000	0	2650000	Intergenic	1	0.36	2E-8	7.698970004336018		    .07	[0.03-0.11] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1p13.3	1	109274968	CELSR2, PSRC1, SORT1	CELSR2			1952			rs12740374-T	rs12740374	0	12740374	UTR-3	0	0.21	2E-42	41.69897000433601		    .23	[0.19-0.27] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p24.1	2	21063185	APOB	APOB - TDRD15	338	100129278		       19.11	       64.42	rs515135-T	rs515135	0	515135	Intergenic	1	0.20	5E-29	28.30102999566398		    .16	[0.12-0.20] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19q13.32	19	44919689	APOE, APOC1, APOC4, APOC2	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.16	4E-27	26.39794000867203		    .29	[0.17-0.41] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.10	2E-26	25.69897000433602		    .26	[0.18-0.34] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	5q13.3	5	75359901	HMGCR	HMGCR			3156			rs3846663-T	rs3846663	0	3846663	intron	0	0.38	8E-12	11.09691001300806		    .07	[0.03-0.11] s.d.  increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.11	19	19296909	NCAN, CILP2, PBX4	SUGP1			57794			rs10401969-C	rs10401969	0	10401969	intron	0	0.06	2E-8	7.698970004336018		    .05	[-0.03-0.13] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1p32.3	1	55030366	PCSK9	BSND - PCSK9	7809	255738		       21.57	        9.11	rs11206510-C	rs11206510	0	11206510	Intergenic	1	0.19	4E-8	7.397940008672037		    .09	[0.05-0.13] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q12.2	11	61803311	FADS1, FADS2, FADS3	FADS1			3992			rs174547-C	rs174547	0	174547	intron	0	0.33	2E-14	13.69897000433602		    .06	[0.02-0.10] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q13.12	20	45947863	PLTP	PCIF1			63935			rs7679-C	rs7679	0	7679	UTR-3	0	0.19	7E-11	10.15490195998574		    .07	[0.03-0.11] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8p23.1	8	11187652	XKR6, AMAC1L2	XKR6			286046			rs7819412-G	rs7819412	0	7819412	intron	0	0.48	3E-8	7.522878745280337		    .04	[0.001-0.08] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q23.3	11	116778201	APOA1, APOC3, APOA4, APOA5	ZPR1			8882			rs964184-G	rs964184	0	964184	intron	0	0.14	4E-62	61.39794000867203		    .30	[0.24-0.36] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8p21.3	8	19986711	LPL	LPL - RPL30P9	4023	100270981		       19.45	      126.63	rs12678919-G	rs12678919	0	12678919	Intergenic	1	0.10	2E-41	40.69897000433602		    .25	[0.19-0.31] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-T	rs1260326	0	1260326	missense	0	0.45	2E-31	30.69897000433602		    .12	[0.08-0.16] s.d. increase	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	8q24.13	8	125478730	TRIB1	TRIB1 - LINC00861	10221	100130231		       40.33	      443.79	rs2954029-T	rs2954029	0	2954029	Intergenic	1	0.44	3E-19	18.52287874528033		    .11	[0.07-0.15] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	7q11.23	7	73450539	MLXIPL	BAZ1B			9031			rs714052-G	rs714052	0	714052	intron	0	0.12	3E-15	14.52287874528034		    .16	[0.10-0.22] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p24.1	2	20985339	APOB	C2orf43 - APOB	60526	338		      162.21	       16.09	rs7557067-G	rs7557067	0	7557067	Intergenic	1	0.22	9E-12	11.04575749056067		    .08	[0.04-0.12] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.11	19	19551411	NCAN,CILP2,PBX4	CILP2 - PBX4	148113	80714		        4.75	       10.30	rs17216525-T	rs17216525	0	17216525	Intergenic	1	0.07	4E-11	10.39794000867204		    .11	[0.05-0.17] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060906	Kathiresan S	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060906?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1p31.3	1	62652525	ANGPTL3	DOCK7			85440			rs10889353-C	rs10889353	0	10889353	intron	0	0.33	3E-7	6.522878745280337		    .05	[0.01-0.09] s.d. decrease	Affymetrix and Illumina [~2,600,000] (imputed)	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish individuals	NA	11p11.2	11	47264739	NR1H3	NR1H3			10062			rs7120118-G	rs7120118	0	7120118	intron	0	0.42	4E-8	7.397940008672037		    .04	[0.03-0.05] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish individuals	NA	15q21.3	15	58391167	LIPC	LOC102724766			102724766			rs1532085-A	rs1532085	0	1532085	intron	0	0.44	2E-10	9.698970004336017		    .05	[0.03-0.06] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish individuals	NA	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.28	7E-29	28.15490195998574		    .09	[0.08-0.11] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish individuals	NA	17p13.3	17	2525214	Intergenic	METTL16 - EIF4A1P9	79066	642746		       13.31	       61.11	rs9891572-A	rs9891572	0	9891572	Intergenic	1	0.16	2E-7	6.698970004336019		    .05	[0.048-0.051] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish individuals	NA	16q22.1	16	67979568	LCAT	DPEP3			64180			rs255049-G	rs255049	0	255049	intron	0	0.22	3E-8	7.522878745280337		    .05	[0.03-0.07] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish individuals	NA	1p13.3	1	109275908	CELSR2, PSRC1, SORT1	CELSR2			1952			rs646776-G	rs646776	0	646776	nearGene-3	0	0.21	2E-12	11.69897000433602		    .16	[0.11-0.20] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish individuals	NA	1q32.2	1	207701830	CR1L	CR1L			1379			rs4844614-A	rs4844614	0	4844614	intron	0	0.32	2E-7	6.698970004336019		    .10	[0.06-0.14] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish individuals	NA	2p24.1	2	21009323	APOB	APOB			338			rs693-A	rs693	0	693	cds-synon	0	0.41	3E-11	10.52287874528034		    .12	[0.09-0.16] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish individuals	NA	11q12.2	11	61802358	FADS1, FADS2	FADS1			3992			rs174546-A	rs174546	0	174546	UTR-3	0	0.44	1E-7	7		    .10	[0.06-0.13] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish individuals	NA	19q13.32	19	44892009	APO cluster	TOMM40			10452			rs157580-G	rs157580	0	157580	intron	0	0.29	5E-8	7.30102999566398		    .11	[0.07-0.15] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish individuals	NA	Xq12	23	67722783	AR	AR			367			rs5031002-A	rs5031002	0	5031002	intron	0	0.02	2E-7	6.698970004336019		    .30	[0.18-0.41] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish individuals	NA	19p13.2	19	11084354	LDLR	SMARCA4 - LDLR	6597	3949		       22.07	        5.01	rs11668477-G	rs11668477	0	11668477	Intergenic	1	0.18	2E-7	6.698970004336019		    .13	[0.08-0.17] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	2p24.1	2	21014672	APOB	APOB			338			rs673548-A	rs673548	0	673548	intron	0	0.27	2E-8	7.698970004336018	(TG)	    .08	[0.05-0.11] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-A	rs1260326	0	1260326	missense	0	0.35	4E-10	9.397940008672037	(TG)	    .09	[0.06-0.12] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	8p21.3	8	19973410	LPL	LPL - RPL30P9	4023	100270981		        6.15	      139.93	rs10096633-A	rs10096633	0	10096633	Intergenic	1	0.098	5E-8	7.30102999566398	(TG)	    .12	[0.07-0.17] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	15q14	15	38856448	Intergenic	C15orf53 - C15orf54	400359	400360		      156.41	      394.24	rs2624265-G	rs2624265	0	2624265	Intergenic	1	0.42	4E-7	6.397940008672037	(TG)	    .07	[0.04-0.10] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	1p31.3	1	65703996	LEPR	LEPR - PDE4B	3953	5142		       66.50	       88.51	rs12753193-G	rs12753193	0	12753193	Intergenic	1	0.45	4E-7	6.397940008672037	(CRP)	    .13	[-0.02-0.27] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	1q23.2	1	159709026	CRP	CRPP1 - CRP	171422	1401		        3.43	        3.26	rs2794520-A	rs2794520	0	2794520	Intergenic	1	0.36	3E-22	21.52287874528033	(CRP)	    .47	[0.32-0.62] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	12q24.31	12	120951159	LEF1	RPL12P33 - HNF1A-AS1	643550	283460		       33.88	       18.68	rs2650000-A	rs2650000	0	2650000	Intergenic	1	0.45	3E-11	10.52287874528034	(CRP)	    .40	[0.25-0.55] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	2q31.1	2	168906638	G6PC2, ABCB11	G6PC2			57818			rs560887-A	rs560887	0	560887	intron	0	0.31	6E-10	9.221848749616356	(GLU)	    .06	[0.04-0.07] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	7p21.2	7	15024208	Intergenic	GTF3AP5 - AGMO	100128217	392636		       38.08	      176.11	rs10244051-C	rs10244051	0	10244051	Intergenic	1	0.46	1E-7	7	(GLU)	    .05	[0.03-0.06] mmol/l increase	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	11q14.3	11	92989595	MTNR1B	MTNR1B - RPL26P31	4544	100271469		        6.81	       62.78	rs1447352-G	rs1447352	0	1447352	Intergenic	1	0.42	6E-8	7.221848749616355	(GLU)	    .05	[0.03-0.06] mmol/l decrease	Illumina [329,091]	N
01/12/2009	19060910	Sabatti C	12/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060910?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish individuals	NA	10q23.31	10	89612776	PANK1	PANK1			53354			rs11185790-A	rs11185790	0	11185790	intron	0	0.21	3E-7	6.522878745280337	(INS)	    .31	[0.18-0.44] mmol/l decrease	Illumina [329,091]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	1q41	1	218532472	Intergenic	TGFB2 - LYPLAL1	7042	127018		       87.85	      641.38	rs1018040-?	rs1018040	0	1018040	Intergenic	1	NR	5E-6	5.301029995663981	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	4q13.3	4	74358873	EREG	EPGN - EREG	255324	2069		       42.07	        6.27	rs1350666-?	rs1350666	0	1350666	Intergenic	1	NR	8E-6	5.096910013008055	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	14q23.2	14	62211585	Intergenic	LINC00644 - ATP5A1P4	101954204	100129782		       71.61	      392.53	rs1514928-?	rs1514928	0	1514928	Intergenic	1	NR	3E-6	5.522878745280337	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	16q22.1	16	69101146	HAS3	RPS2P45 - HAS3	80052	3038		       66.59	        4.42	rs8047014-?	rs8047014	0	8047014	Intergenic	1	NR	4E-6	5.397940008672037	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	19q13.43	19	58259517	ZNF544	ZNF544			27300			rs260461-?	rs260461	0	260461	intron	0	NR	8E-6	5.096910013008055	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	22q12.3	22	34463801	Intergenic	LARGE-AS1 - ISX	100506195	91464		      712.98	      602.34	rs130575-?	rs130575	0	130575	Intergenic	1	NR	5E-6	5.301029995663981	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q14.3	2	122884035	Intergenic	TSN - CNTNAP5	7247	129684		     1116.18	     1141.25	rs17367118-?	rs17367118	0	17367118	Intergenic	1	NR	9E-6	5.045757490560675	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q24.1	2	156031988	Intergenic	MTND5P30 - NR4A2	100873266	4929		      718.56	      292.44	rs1918172-?	rs1918172	0	1918172	Intergenic	1	NR	5E-6	5.301029995663981	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	3p24.3	3	21913706	Intergenic	ZNF385D			79750			rs11719664-?	rs11719664	0	11719664	intron	0	NR	2E-6	5.698970004336018	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	8q24.3	8	143575430	NAPRT1	NAPRT1			93100			rs2290416-?	rs2290416	0	2290416	cds-synon	0	NR	9E-6	5.045757490560675	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	11p13	11	32500461	Intergenic	WT1-AS - EIF3M	51352	10480		       60.37	       83.31	rs10767942-?	rs10767942	0	10767942	Intergenic	1	NR	8E-6	5.096910013008055	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	13q32.3	13	99902784	CLYBL	CLYBL;LOC101927437			171425;101927437			rs7992643-?	rs7992643	0	7992643	intron;intron	0	NR	5E-6	5.301029995663981	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2p21	2	42754099	OXER1	MTA3			57504			rs930421-?	rs930421	0	930421	UTR-3	0	NR	6E-6	5.221848749616356	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q21.2	2	133282947	FLJ34870	NCKAP5;LOC101928161			344148;101928161			rs7577925-?	rs7577925	0	7577925	intron;intron	0	NR	3E-6	5.522878745280337	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	12p11.22	12	28075634	Intergenic	PTHLH - CCDC91	5744	55297		      103.65	      114.79	rs522958-?	rs522958	0	522958	Intergenic	1	NR	1E-6	5.999999999999999	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q14.1	2	115898219	Intergenic	RPSAP23 - TRNAL46P	100270875	100189522		      429.27	     1125.62	rs272000-?	rs272000	0	272000	Intergenic	1	NR	9E-6	5.045757490560675	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	3p14.2	3	60785375	FHIT	FHIT			2272			rs6791644-?	rs6791644	0	6791644	intron	0	NR	8E-6	5.096910013008055	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	3p13	3	70971339	FOXP1	FOXP1			27086			rs17651978-?	rs17651978	0	17651978	intron	0	NR	6E-6	5.221848749616356	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	1p31.2	1	69113569	Intergenic	TXNP2 - LRRC7	171416	57554		      598.83	      453.98	rs4147141-?	rs4147141	0	4147141	Intergenic	1	NR	6E-6	5.221848749616356	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	2q36.3	2	225373194	Intergenic	MIR4439 - NYAP2	100616207	57624		      362.65	       26.52	rs1517484-C	rs1517484	0	1517484	Intergenic	1	NR	5E-7	6.30102999566398	(earlier onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	3p22.3	3	32800609	Intergenic	RPL23AP43 - YPLR6490	389101	389102		       14.43	       15.74	rs9845475-G	rs9845475	0	9845475	Intergenic	1	NR	4E-6	5.397940008672037	(later onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	3q29	3	195037281	Intergenic	FAM43A - XXYLT1	131583	152002		      348.24	       31.00	rs3892715-C	rs3892715	0	3892715	Intergenic	1	NR	6E-6	5.221848749616356	(earlier onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	5q35.3	5	179143913	ADAMTS2	ADAMTS2			9509			rs10039254-A	rs10039254	0	10039254	intron	0	NR	8E-6	5.096910013008055	(later onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	6q15	6	90497632	Intergenic	MIR4464 - MAP3K7	100616109	6885		      184.80	       15.94	rs806276-A	rs806276	0	806276	Intergenic	1	NR	3E-7	6.522878745280337	(later onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	8q23.3	8	115381846	Intergenic	RPL18P7 - TRPS1	100270945	7227		     2004.56	       26.65	rs17658378-A	rs17658378	0	17658378	Intergenic	1	NR	9E-6	5.045757490560675	(later onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	9p23	9	12582565	Intergenic	JKAMPP1 - TYRP1	100049717	7306		      293.33	      110.82	rs1325154-C	rs1325154	0	1325154	Intergenic	1	NR	5E-6	5.301029995663981	(later onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	14q23.1	14	57918647	Intergenic	SLC35F4 - C14orf37	341880	145407		       52.77	       85.44	rs1335515-C	rs1335515	0	1335515	Intergenic	1	NR	8E-6	5.096910013008055	(earlier onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	20q13.13	20	47771969	SULF2	SULF2			55959			rs4810685-C	rs4810685	0	4810685	intron	0	NR	7E-6	5.154901959985742	(earlier onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	7q31.1	7	110407414	Intergenic	RPL3P8 - IMMP2L	646620	83943		      407.77	      255.64	rs6968385-T	rs6968385	0	6968385	Intergenic	1	NR	2E-6	5.698970004336018	(earlier onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18937294	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18937294?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	11p15.1	11	19548016	Intergenic	NAV2			89797			rs874426-C	rs874426	0	874426	intron	0	NR	4E-6	5.397940008672037	(earlier onset)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	2p21	2	42758663	OXER1	MTA3 - OXER1	57504	165140		        1.72	        3.84	rs6719977-?	rs6719977	0	6719977	Intergenic	1	NR	2E-6	5.698970004336018	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	3q26.1	3	161674788	Intergenic	OTOL1 - TOMM22P6	131149	100287573		      170.84	      811.73	rs6808138-?	rs6808138	0	6808138	Intergenic	1	NR	5E-6	5.301029995663981	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	9p24.3	9	1056959	DMRT2	DMRT2			10655			rs17641078-?	rs17641078	0	17641078	missense	0	NR	5E-6	5.301029995663981	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	21q21.3	21	29678497	GRIK1	GRIK1			2897			rs363512-?	rs363512	0	363512	intron	0	NR	4E-6	5.397940008672037	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	6p22.3	6	18791492	Intergenic	MIR548A1 - TRNAQ22	693125	100189287		      219.61	       44.68	rs41441749-?	rs41441749	0	41441749	Intergenic	1	NR	1E-6	5.999999999999999	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	6p22.3	6	20155943	Intergenic	MBOAT1			154141			rs1202199-?	rs1202199	0	1202199	intron	0	NR	9E-6	5.045757490560675	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	15q14	15	37050401	MEIS2	MEIS2			4212			rs8041675-?	rs8041675	0	8041675	intron	0	NR	4E-6	5.397940008672037	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	18q22.1	18	67733188	Intergenic	LOC643542			643542			rs13353224-?	rs13353224	0	13353224	intron	0	NR	9E-6	5.045757490560675	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	19q13.43	19	57248650	LOC390980	ZNF805			390980			rs2014572-?	rs2014572	0	2014572	missense	0	NR	7E-6	5.154901959985742	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	1q41	1	218532472	Intergenic	TGFB2 - LYPLAL1	7042	127018		       87.85	      641.38	rs1018040-?	rs1018040	0	1018040	Intergenic	1	NR	8E-6	5.096910013008055	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	3q26.1	3	161674788	Intergenic	OTOL1 - TOMM22P6	131149	100287573		      170.84	      811.73	rs6808138-?	rs6808138	0	6808138	Intergenic	1	NR	8E-6	5.096910013008055	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	12p11.22	12	28075634	Intergenic	PTHLH - CCDC91	5744	55297		      103.65	      114.79	rs522958-?	rs522958	0	522958	Intergenic	1	NR	8E-7	6.096910013008056	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	1p13.2	1	112770941	Intergenic	FAM19A3 - RPL39P8	284467	100270893		       43.71	      119.65	rs11590090-?	rs11590090	0	11590090	Intergenic	1	NR	3E-6	5.522878745280337	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	8p21.3	8	19929380	LPL	INTS10 - LPL	55174	4023		       77.30	        9.69	rs7816032-?	rs7816032	0	7816032	Intergenic	1	NR	2E-6	5.698970004336018	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	1p31.2	1	69113569	Intergenic	TXNP2 - LRRC7	171416	57554		      598.83	      453.98	rs4147141-?	rs4147141	0	4147141	Intergenic	1	NR	8E-6	5.096910013008055	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	1p31.2	1	69219314	Intergenic	TXNP2 - LRRC7	171416	57554		      704.57	      348.23	rs4650135-?	rs4650135	0	4650135	Intergenic	1	NR	5E-6	5.301029995663981	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	8p11.21	8	40395182	Intergenic	C8orf4 - ZMAT4	56892	79698		      239.87	      135.41	rs11786458-?	rs11786458	0	11786458	Intergenic	1	NR	9E-6	5.045757490560675	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	9q22.32	9	95666984	Intergenic	PSMA7P - LINC00476	158441	100128782		       13.72	      139.10	rs11790994-?	rs11790994	0	11790994	Intergenic	1	NR	2E-7	6.698970004336019	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	13q12.12	13	24024245	Intergenic	SPATA13			221178			rs17079773-?	rs17079773	0	17079773	intron	0	NR	5E-6	5.301029995663981	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	12q24.22	12	117313620	Intergenic	NOS1			4842			rs478597-?	rs478597	0	478597	intron	0	NR	8E-6	5.096910013008055	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	15q13.1	15	29596192	Intergenic	NDNL2 - TJP1	56160	7082		      326.38	      103.94	rs1471225-?	rs1471225	0	1471225	Intergenic	1	NR	8E-6	5.096910013008055	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	15q25.1	15	81241354	IL16	IL16			3603			rs7172689-?	rs7172689	0	7172689	intron	0	NR	4E-6	5.397940008672037	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	8q21.11	8	73361956	Intergenic	RDH10 - STAU2-AS1	157506	100128126		       36.67	       58.12	rs12679254-?	rs12679254	0	12679254	Intergenic	1	NR	2E-6	5.698970004336018	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	11q22.3	11	106459435	Intergenic	AASDHPPT - GUCY1A2	60496	2977		      360.74	      214.58	rs10895959-?	rs10895959	0	10895959	Intergenic	1	NR	3E-6	5.522878745280337	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	15q26.1	15	92008799	SLCO3A1	SLCO3A1			28232			rs7495052-?	rs7495052	0	7495052	intron	0	NR	3E-6	5.522878745280337	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	16q12.1	16	49716879	ZNF423	ZNF423			23090			rs17281813-?	rs17281813	0	17281813	intron	0	NR	3E-6	5.522878745280337	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	16q23.1	16	76844965	Intergenic	CNTNAP4 - MIR4719	85445	100616172		      285.73	       23.97	rs13330107-?	rs13330107	0	13330107	Intergenic	1	NR	9E-6	5.045757490560675	(binary)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	7q36.3	7	157502244	Intergenic	DNAJB6 - PTPRN2	10049	5799		       84.81	       36.81	rs10227331-?	rs10227331	0	10227331	Intergenic	1	NR	4E-6	5.397940008672037	(count)	NR	NR	Perlegen [429,981]	N
05/07/2009	18821565	Lasky-Su J	12/05/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821565?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	9q21.31	9	79274443	Intergenic	KRT18P24 - CHCHD2P9	340460	645345		      236.70	      116.82	rs2769967-?	rs2769967	0	2769967	Intergenic	1	NR	3E-6	5.522878745280337	(count)	NR	NR	Perlegen [429,981]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-?	rs8050136	0	8050136	intron	0	NR	2E-17	16.69897000433602	(obese)	   1.30	[1.23-1.39] 	Affymetrix [393,453]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	11p15.1	11	17388025	KCNJ11	KCNJ11			3767			rs5219-?	rs5219	0	5219	missense	0	NR	5E-7	6.30102999566398	(obese)	   1.19	[1.11-1.27] 	Affymetrix [393,453]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	11p15.1	11	17388025	KCNJ11	KCNJ11			3767			rs5219-?	rs5219	0	5219	missense	0	NR	1E-9	8.999999999999998	(non-obese)	   1.25	[1.16-1.34] 	Affymetrix [393,453]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	9p21.3	9	22134095	CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      121.56	      312.75	rs10811661-?	rs10811661	0	10811661	Intergenic	1	NR	7E-7	6.154901959985743	(non-obese)	   1.26	[1.15-1.38] 	Affymetrix [393,453]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	6p22.3	6	20660803	CDKAL	CDKAL1			54901			rs10946398-?	rs10946398	0	10946398	intron	0	NR	7E-7	6.154901959985743	(non-obese)	   1.18	[1.11-1.26] 	Affymetrix [393,453]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-?	rs13266634	0	13266634	missense	0	NR	7E-6	5.154901959985742	(non-obese)	   1.18	[1.10-1.27] 	Affymetrix [393,453]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-?	rs7903146	0	7903146	intron	0	NR	6E-16	15.22184874961635	(obese)	   1.31	[1.23-1.40] 	Affymetrix [393,453]	N
01/15/2009	19056611	Timpson NJ	12/03/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/19056611?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-?	rs7903146	0	7903146	intron	0	NR	9E-30	29.04575749056067	(non-obese)	   1.49	[1.39-1.59] 	Affymetrix [393,453]	N
01/12/2009	19047183	Friedman RA	12/01/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19047183?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	GRM7 variants confer susceptibility to age-related hearing impairment.	Hearing impairment	846 European ancestry cases, 846 European ancestry controls	63 European ancestry cases, 67 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [506,627] (pooled)	N
02/26/2009	19060907	Prokopenko I	12/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060907?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in MTNR1B influence fasting glucose levels.	Fasting plasma glucose	35,812 European ancestry individuals	NA	11q14.3	11	92975544	MTNR1B	MTNR1B			4544			rs10830963-G	rs10830963	0	10830963	intron	0	0.28	3E-50	49.52287874528033		    .07	[0.06-0.08] mmol/l increase	Affymetrix, Illumina and Perlegen [up to 2,557,249] (imputed)	N
02/26/2009	19060907	Prokopenko I	12/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060907?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in MTNR1B influence fasting glucose levels.	Fasting plasma glucose	35,812 European ancestry individuals	NA	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-C	rs560887	0	560887	intron	0	0.70	1E-57	56.99999999999999		    .06	[0.05-0.07] mmol/l increase	Affymetrix, Illumina and Perlegen [up to 2,557,249] (imputed)	N
02/26/2009	19060907	Prokopenko I	12/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19060907?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in MTNR1B influence fasting glucose levels.	Fasting plasma glucose	35,812 European ancestry individuals	NA	7p13	7	44196069	GCK	GCK - YKT6	2645	10652		        6.65	        4.90	rs4607517-A	rs4607517	0	4607517	Intergenic	1	0.18	1E-25	25		    .06	[0.05-0.07] mmol/l increase	Affymetrix, Illumina and Perlegen [up to 2,557,249] (imputed)	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	2p14	2	68343640	PLEK	CNRIP1 - PLEK	25927	5341		       23.59	       21.55	rs9309413-?	rs9309413	0	9309413	Intergenic	1	0.45	2E-9	8.698970004336019	(SM)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	6q26	6	161580404	PARK2	PARK2			5071			rs992037-?	rs992037	0	992037	intron	0	0.35	1E-7	7	(Lysine)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	11q12.2	11	61803876	FADS1	FADS1			3992			rs174548-?	rs174548	0	174548	intron	0	0.28	5E-8	7.30102999566398	(PC)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	10p11.21	10	37219522	ANKRD30A	ANKRD30A			91074			rs1148259-?	rs1148259	0	1148259	cds-synon	0	0.42	3E-9	8.522878745280337	(SM)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	15q21.3	15	58382496	LIPC	LOC102724766			102724766			rs4775041-?	rs4775041	0	4775041	intron	0	0.28	1E-7	7	(PE)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	3p25.3	3	10494087	ATP2B2	ATP2B2			491			rs6807064-?	rs6807064	0	6807064	intron	0	0.29	1E-7	7	(phenylalanine)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	3q22.3	3	137389640	Intergenic	IL20RB - RNA5SP142	53833	100873409		      378.56	      128.49	rs1382269-?	rs1382269	0	1382269	Intergenic	1	0.47	5E-7	6.30102999566398	(SM)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	3q28	3	192376186	FGF12	FGF12			2257			rs4453795-?	rs4453795	0	4453795	intron	0	0.41	4E-7	6.397940008672037	(PC)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	4q13.1	4	59883111	Intergenic	SRIP1 - MIR548AG1	6644	100616450		     1779.48	     1039.51	rs10517480-?	rs10517480	0	10517480	Intergenic	1	0.31	2E-7	6.698970004336019	(PC)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	6q12	6	65855460	Intergenic	ADH5P4 - NUFIP1P	642443	89761		       17.39	      236.02	rs9354308-?	rs9354308	0	9354308	Intergenic	1	0.37	3E-7	6.522878745280337	(serotonin)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	6q25.1	6	150330764	C6orf71	RNU4-7P - IYD	6069	389434		        3.70	       38.09	rs1591830-?	rs1591830	0	1591830	Intergenic	1	0.32	1E-7	7	(sugar)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	7q31.1	7	113271355	Intergenic	LINC00998 - PPP1R3A	401397	5506		      152.77	      605.47	rs10953730-?	rs10953730	0	10953730	Intergenic	1	0.35	2E-7	6.698970004336019	(acylcarnitine)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	12q24.21	12	115064913	Intergenic	TBX3 - UBA52P7	6926	100128617		      380.75	      527.69	rs2194980-?	rs2194980	0	2194980	Intergenic	1	0.33	3E-7	6.522878745280337	(Tyrosine)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	13q31.3	13	92670893	GPC5	GPC5			2262			rs17267292-?	rs17267292	0	17267292	intron	0	0.28	1E-7	7	(Docosahexaonic acid)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	15q26.1	15	91174122	SV2B	SV2B			9899			rs886144-?	rs886144	0	886144	intron	0	0.38	2E-7	6.698970004336019	(SM)	NR	NR	Affymetrix[187,454]	N
12/24/2008	19043545	Gieger C	11/28/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/19043545	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry males	NA	16p13.3	16	7454852	A2BP1	RBFOX1			54715			rs9924951-?	rs9924951	0	9924951	intron	0	0.41	5E-7	6.30102999566398	(PC)	NR	NR	Affymetrix[187,454]	N
12/09/2008	18957941	Terracciano A	11/24/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18957941?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 Other ancestry individuals	19q13.31	19	44466713	ZNF180	ZNF285B			147711			rs644148-G	rs644148	0	644148		0	0.50	8E-6	5.096910013008055	(extraversion)	    .14	[NR] s.d. increase	Affymetrix[362,129]	N
12/09/2008	18957941	Terracciano A	11/24/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18957941?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 Other ancestry individuals	19q13.31	19	44466713	ZNF180	ZNF285B			147711			rs644148-G	rs644148	0	644148		0	0.50	9E-7	6.045757490560675	(openness)	    .15	[NR] s.d. increase	Affymetrix[362,129]	N
12/09/2008	18957941	Terracciano A	11/24/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18957941?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 Other ancestry individuals	Xp11.3	23	44540940	FUNDC1	FUNDC1			139341			rs6610953-G	rs6610953	0	6610953	intron	0	0.85	6E-6	5.221848749616356	(openness)	    .15	[NR] s.d. increase	Affymetrix[362,129]	N
12/09/2008	18957941	Terracciano A	11/24/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18957941?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 Other ancestry individuals	4q12	4	55432027	CLOCK	CLOCK			9575			rs6832769-A	rs6832769	0	6832769	UTR-3	0	0.73	2E-6	5.698970004336018	(agreeableness)	    .14	[NR] s.d. decrease	Affymetrix[362,129]	N
12/09/2008	18957941	Terracciano A	11/24/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18957941?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 Other ancestry individuals	2p22.1	2	39731920	THUMPD2	TMEM178A - THUMPD2	130733	80745		       13.96	        4.14	rs2540226-T	rs2540226	0	2540226	Intergenic	1	0.53	3E-6	5.522878745280337	(agreeableness)	    .13	[NR] s.d. increase	Affymetrix[362,129]	N
01/07/2009	19030899	Lei SF	11/23/2008	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/19030899	Genome-wide association scan for stature in Chinese: evidence for ethnic specific loci.	Height	618 Chinese ancestry individuals	2,953 Chinese ancestry individuals	9q22.33	9	96776856	ZNP510	ZNF510			22869			rs10816533-C	rs10816533	0	10816533	intron	0	0.29	2E-6	5.698970004336018		NR	NR	Affymetrix [281,533]	N
01/06/2009	19023125	Potkin SG	11/20/2008	Schizophr Bull	http://www.ncbi.nlm.nih.gov/pubmed/19023125?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	3p12.3	3	77995538	ROBO2, ROBO1	VDAC1P7 - MRPS17P3	100310839	359757		      677.92	      529.57	rs9836484-?	rs9836484	0	9836484	Intergenic	1	0.32	4E-6	5.397940008672037		NR	NR	Illumina [302,783]	N
01/06/2009	19023125	Potkin SG	11/20/2008	Schizophr Bull	http://www.ncbi.nlm.nih.gov/pubmed/19023125?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	3q26.31	3	171253502	TNIK	TNIK			23043			rs2088885-?	rs2088885	0	2088885	intron	0	0.47	6E-6	5.221848749616356		NR	NR	Illumina [302,783]	N
01/06/2009	19023125	Potkin SG	11/20/2008	Schizophr Bull	http://www.ncbi.nlm.nih.gov/pubmed/19023125?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	5q23.2	5	127833520	CTXN3, SLC12A2	LINC01183			728586			rs245201-?	rs245201	0	245201	intron	0	0.32	9E-8	7.045757490560674		NR	NR	Illumina [302,783]	N
01/06/2009	19023125	Potkin SG	11/20/2008	Schizophr Bull	http://www.ncbi.nlm.nih.gov/pubmed/19023125?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	2q37.3	2	240369088	GPC1	OTOS - GPC1	150677	2817		      228.43	       66.61	rs1574192-?	rs1574192	0	1574192	Intergenic	1	0.38	4E-6	5.397940008672037		NR	NR	Illumina [302,783]	N
01/06/2009	19023125	Potkin SG	11/20/2008	Schizophr Bull	http://www.ncbi.nlm.nih.gov/pubmed/19023125?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	14q32.32	14	102910984	TRAF3	TRAF3			7187			rs10133111-?	rs10133111	0	10133111	UTR-3	0	0.20	5E-6	5.301029995663981		NR	NR	Illumina [302,783]	N
01/06/2009	19023125	Potkin SG	11/20/2008	Schizophr Bull	http://www.ncbi.nlm.nih.gov/pubmed/19023125?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	6q16.1	6	98471388	POU3F2	EIF4EBP2P3 - POU3F2	100190924	5454		      291.55	      363.32	rs9491640-?	rs9491640	0	9491640	Intergenic	1	0.06	9E-6	5.045757490560675		NR	NR	Illumina [302,783]	N
12/01/2008	19011631	Houlston RS	11/16/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19011631?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	19q13.11	19	33041394	RHPN2	RHPN2			85415			rs10411210-C	rs10411210	0	10411210	intron	0	0.90	5E-9	8.301029995663981		   1.15	[1.10-1.20] 	Illumina[up to 548,586]	N
12/01/2008	19011631	Houlston RS	11/16/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19011631?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	20p12.3	20	6423634	Intergenic	FGFR3P3 - CASC20	100462816	101929244		      202.89	        3.10	rs961253-A	rs961253	0	961253	Intergenic	1	0.36	2E-10	9.698970004336017		   1.12	[1.08-1.16] 	Illumina[up to 548,586]	N
12/01/2008	19011631	Houlston RS	11/16/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19011631?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	16q22.1	16	68787043	CDH1	CDH1			999			rs9929218-G	rs9929218	0	9929218	intron	0	0.29	1E-8	8		   1.10	[1.06-1.12] 	Illumina[up to 548,586]	N
12/01/2008	19011631	Houlston RS	11/16/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19011631?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	14q22.2	14	53944201	BMP4	RPS3AP46 - MIR5580	100271596	100847076		      330.82	        4.23	rs4444235-C	rs4444235	0	4444235	Intergenic	1	0.46	8E-10	9.096910013008054		   1.11	[1.08-1.15] 	Illumina[up to 548,586]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Brain lesion load	791 European ancestry cases, 883 European ancestry controls	NA	2q37.1	2	233595452	CHRND	UGT1A			7361			rs2602397-?	rs2602397	1	1597944		0	0.45	4E-6	5.397940008672037		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Brain lesion load	791 European ancestry cases, 883 European ancestry controls	NA	14q12	14	31884044	NUBPL	NUBPL - ARHGAP5-AS1	80224	84837		       22.82	      191.38	rs2039485-?	rs2039485	0	2039485	Intergenic	1	0.22	6E-6	5.221848749616356		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Brain lesion load	791 European ancestry cases, 883 European ancestry controls	NA	6q25.3	6	159981673	IGF2R	IGF2R			3482			rs6917747-?	rs6917747	0	6917747	intron	0	0.15	7E-6	5.154901959985742		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Brain lesion load	791 European ancestry cases, 883 European ancestry controls	NA	19p13.11	19	17007623	CPAMD8	CPAMD8			27151			rs11666377-?	rs11666377	0	11666377	intron	0	0.14	7E-6	5.154901959985742		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	20p13	20	1225242	C20orf46	RAD21L1			642636			rs397020-?	rs397020	0	397020	nearGene-5	0	0.52	8E-7	6.096910013008056		   1.41	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	12q12	12	41572059	PDZRN4	PDZRN4			29951			rs1458175-?	rs1458175	0	1458175	intron	0	0.49	2E-6	5.698970004336018		   1.34	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	8p23.2	8	3970616	CSMD1	CSMD1			64478			rs1529316-?	rs1529316	0	1529316	intron	0	0.47	2E-6	5.698970004336018		   1.36	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	3q23	3	140821876	SLC25A36	TRIM42 - RPL23AP41	287015	646685		      120.73	       80.32	rs908821-?	rs908821	0	908821	Intergenic	1	0.71	3E-6	5.522878745280337		   1.37	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	9p22.2	9	17938353	SH3GL2	PABPC1P11 - PUS7P1	100421058	100421790		      347.66	      215.22	rs1755289-?	rs1755289	0	1755289	Intergenic	1	0.61	3E-6	5.522878745280337		   1.35	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	2q14.2	2	118638115	EN1	INSIG2 - EN1	51141	2019		      528.09	      204.06	rs651477-?	rs651477	0	651477	Intergenic	1	0.26	7E-6	5.154901959985742		   1.38	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	4q34.3	4	181478542	MGC45800	LINC00290 - MGC45800	728081	90768		      319.39	      660.46	rs7672826-?	rs7672826	0	7672826	Intergenic	1	0.34	8E-6	5.096910013008055		   1.37	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	3q24	3	148038899	ZIC1	NPM1P28 - HNRNPA1P20	646849	344741		      447.06	      127.44	rs1841770-?	rs1841770	0	1841770	Intergenic	1	0.53	8E-6	5.096910013008055		   1.34	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	2p25.1	2	9109909	DDEF2	RPL30P3 - ASAP2	100270977	8853		       28.11	       96.86	rs1109670-?	rs1109670	0	1109670	Intergenic	1	0.26	9E-6	5.045757490560675		   1.38	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	13q31.3	13	92679633	GPC5	GPC5			2262			rs9523762-?	rs9523762	0	9523762	intron	0	0.35	1E-6	5.999999999999999		   1.36	[NR] 	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	11q14.2	11	88086259	RAB38	HMGB3P25 - RAB38	100873908	23682		      604.95	       26.99	rs1386330-?	rs1386330	0	1386330	Intergenic	1	0.13	2E-6	5.698970004336018		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	7q22.1	7	103987589	RELN	RELN			5649			rs17157903-?	rs17157903	0	17157903	intron	0	0.14	3E-6	5.522878745280337		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	8q13.3	8	72451754	KCNB2	RNA5SP271 - KCNB2	100873524	9312		       93.94	       85.64	rs2116078-?	rs2116078	0	2116078	Intergenic	1	0.48	3E-6	5.522878745280337		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	18q21.31	18	57085083	WDR7	LINC-ROR - BOD1L2	100885779	284257		       12.96	       61.98	rs1557351-?	rs1557351	0	1557351	Intergenic	1	0.22	4E-6	5.397940008672037		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	9q21.13	9	76291234	RFK	PCSK5			5125			rs2842483-?	rs2842483	0	2842483	intron	0	0.29	5E-6	5.301029995663981		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	1q25.2	1	179500179	C1orf125	AXDND1			126859			rs12047808-?	rs12047808	0	12047808	intron	0	0.13	6E-6	5.221848749616356		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	5q33.2	5	156073982	SGCD	SGCD			6444			rs4704970-?	rs4704970	0	4704970	intron	0	0.20	7E-6	5.154901959985742		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	2q21.2	2	132989057	FLJ34870	NCKAP5			344148			rs1437898-?	rs1437898	0	1437898	intron	0	0.40	8E-6	5.096910013008055		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	3q25.31	3	156908302	FLJ16641	LEKR1			389170			rs12638253-?	rs12638253	0	12638253	intron	0	0.47	2E-6	5.698970004336018		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	4q28.3	4	130869346	LOC132321	GAPDHP56 - RPL7AP28	100421232	100271209		      365.01	      987.99	rs1478091-?	rs1478091	0	1478091	Intergenic	1	0.06	2E-6	5.698970004336018		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	19q13.43	19	55802162	NLRP11	NLRP11			204801			rs299175-?	rs299175	0	299175	intron	0	0.46	4E-6	5.397940008672037		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	7p22.1	7	7228800	C1GALT1	C1GALT1			56913			rs10259085-?	rs10259085	0	10259085	intron	0	0.46	4E-6	5.397940008672037		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	4q13.2	4	67198722	CENPC1	RPS23P3 - CENPC	100271091	1060		      767.20	      273.55	rs10518025-?	rs10518025	0	10518025	Intergenic	1	0.14	4E-6	5.397940008672037		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	6p23	6	15088920	JARID2	LINC01108 - RPL6P17	102216342	100131229		      803.47	       14.03	rs6941421-?	rs6941421	0	6941421	Intergenic	1	0.24	6E-6	5.221848749616356		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	16q22.3	16	73547159	C16orf47	LOC101927998			101927998			rs7191888-?	rs7191888	0	7191888	intron	0	0.17	6E-6	5.221848749616356		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	11q23.3	11	116728676	MGC13125	RPL15P15 - BUD13	100128347	84811		      777.88	       19.49	rs180358-?	rs180358	0	180358	Intergenic	1	0.23	6E-6	5.221848749616356		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	7q31.2	7	116706549	MET	MET			4233			rs10243024-?	rs10243024	0	10243024	intron	0	0.23	6E-6	5.221848749616356		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	18q22.3	18	72107043	CBLN2	GTSCR1 - CBLN2	220158	147381		     1456.19	      429.64	rs337718-?	rs337718	0	337718	Intergenic	1	0.29	9E-6	5.045757490560675		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	19p13.2	19	11571680	ACP5	 - 						rs7253363-?	rs7253363	0	7253363	Intergenic	1	0.05	9E-6	5.045757490560675		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	12p11.21	12	32323793	BICD1	BICD1			636			rs261902-?	rs261902	0	261902	intron	0	0.16	4E-6	5.397940008672037		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	6q21	6	108595370	FOXO3	FOXO3			2309			rs9480865-?	rs9480865	0	9480865	intron	0	0.16	7E-6	5.154901959985742		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	10p11.23	10	29719734	SVIL	SVIL			6840			rs1927457-?	rs1927457	0	1927457	intron	0	0.31	8E-6	5.096910013008055		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	10q25.2	10	110246728	MXI1	MXI1			4601			rs716595-?	rs716595	0	716595	intron	0	0.08	8E-6	5.096910013008055		NR	NR	Illumina[551,642]	N
01/16/2009	19010793	Baranzini SE	11/14/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/19010793?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	5q35.1	5	170523390	KCNIP1	KCNIP1			30820			rs11957313-?	rs11957313	0	11957313	intron	0	0.13	9E-6	5.045757490560675		NR	NR	Illumina[551,642]	N
12/09/2008	18997785	Aulchenko YS	11/09/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18997785?ordinalpos=&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.SmartSearch&log$=citationsensor	Genetic variation in the KIF1B locus influences susceptibility to multiple sclerosis.	Multiple sclerosis	45 Dutch cases,195 Dutch controls	1,316 European ancestry cases, 1,423 European ancestry controls, 1,318 Other ancestry cases and 1,507 Other ancestry controls from 756 families	1p36.22	1	10293054	KIF1B	KIF1B			23095			rs10492972-C	rs10492972	0	10492972	intron	0	0.27	3E-10	9.522878745280336		   1.34	[1.23-1.48] 	Affymetrix[~250,000]	N
12/01/2008	18997786	Bilguvar K	11/09/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18997786	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	2q33.1	2	197766990	BOLL, PLCL1	BOLL			66037			rs700651-G	rs700651	0	700651	intron	0	0.35	4E-8	7.397940008672037		   1.24	[1.15-1.34] 	Illumina [289,271]	N
12/01/2008	18997786	Bilguvar K	11/09/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18997786	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	8q11.23	8	54414531	SOX17	RNU105C - SOX17	26766	64321		       83.64	       43.40	rs10958409-A	rs10958409	0	10958409	Intergenic	1	0.15	1E-10	10		   1.36	[1.24-1.49] 	Illumina [289,271]	N
12/01/2008	18997786	Bilguvar K	11/09/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18997786	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	8q11.23	8	54524964	SOX17	SEC11B - RP1	157708	6101		        1.58	       91.10	rs9298506-A	rs9298506	0	9298506	Intergenic	1	0.81	2E-9	8.698970004336019		   1.35	[1.22-1.49] 	Illumina [289,271]	N
12/01/2008	18997786	Bilguvar K	11/09/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18997786	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	9p21.3	9	22083405	CDKN2A, CDKN2B	CDKN2B-AS1			100048912			rs1333040-T	rs1333040	0	1333040	intron	0	0.55	1E-10	10		   1.29	[1.19-1.40] 	Illumina [289,271]	N
12/30/2008	19009022	Drgon T	11/09/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/19009022?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association for nicotine dependence and smoking cessation success in NIH research volunteers.	Nicotine dependence	220 European ancestry cases, 260 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[~600,00] (pooled)	N
12/09/2008	18985386	Pankratz N	11/06/2008	Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18985386?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association study for susceptibility genes contributing to familial Parkinson disease.	Parkinson's disease (familial)	1,119 European ancestry cases, 1,127 European ancestry controls	NA	4p16.3	4	858525	GAK, DGKQ	GAK			2580			rs1564282-T	rs1564282	0	1564282	intron	0	0.09	7E-7	6.154901959985743		   1.70	[NR] 	Illumina[328,189]	N
12/09/2008	18987618	Cronin S	11/05/2008	Eur J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18987618?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSu	Screening for replication of genome-wide SNP associations in sporadic ALS.	Amyotrophic lateral sclerosis	958 European ancestry cases, 932 European ancestry controls	309 European ancestry cases, 404 European ancestry controls	7q36.2	7	154513713	DPP6	DPP6			1804			rs10260404-C	rs10260404	0	10260404	intron	0	0.35	3E-6	5.522878745280337		   1.37	[1.20-1.56] 	Illumina[287,522]	N
12/01/2008	18980221	Neale BM	11/03/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18980221?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association scan of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder	909 European ancestry trios	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Perlegen[438,784]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	2p23.3	2	24469940	Intergenic	RPL36AP13 - NCOA1	100271323	8648		      135.16	       22.11	rs2165738-C	rs2165738	0	2165738	Intergenic	1	0.27	4E-6	5.397940008672037		   1.07	[1.01-1.13] 	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6q15	6	90248512	BACH2	BACH2			60468			rs11755527-G	rs11755527	0	11755527	intron	0	0.47	5E-12	11.30102999566398	 	   1.13	[1.08-1.19] 	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	10p15.1	10	6348488	PRKCQ	DKFZp667F0711			399716			rs947474-G	rs947474	0	947474	nearGene-5	0	0.19	4E-9	8.397940008672036	 	   1.10	[1.03-1.18] 	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	15q25.1	15	78943104	CTSH	CTSH			1512			rs3825932-T	rs3825932	0	3825932	intron	0	0.68	3E-15	14.52287874528034		   1.16	[1.10-1.22] 	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	22q12.3	22	37195278	C1QTNF6	C1QTNF6 - SSTR3	114904	6753		        4.35	        8.96	rs229541-T	rs229541	0	229541	Intergenic	1	0.43	2E-8	7.698970004336018		   1.11	[1.05-1.16] 	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	16p13.13	16	11270222	C16orf75, PRM3, TNP2	TNP2			7142			rs416603-T	rs416603	0	416603	nearGene-5	0	0.44	3E-6	5.522878745280337	 	   1.06	[1.01-1.12] 	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	1p13.2	1	113761186	PTPN22	PHTF1			10745			rs6679677-A	rs6679677	0	6679677	nearGene-5	0	NR	1E-40	40		NR	NR	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	2q33.2	2	203874196	CTLA4	CTLA4			1493			rs3087243-A	rs3087243	0	3087243	nearGene-3	0	NR	8E-11	10.09691001300805		NR	NR	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	6p21.32	6	32636595	HLA	HLA-DQA1			3117			rs9272346-G	rs9272346	0	9272346	nearGene-5	0	NR	6E-129	128.2218487496164		NR	NR	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	10p15.1	10	6081532	IL2RA	RPL32P23 - RBM17	644020	84991		        9.61	        7.45	rs12251307-T	rs12251307	0	12251307	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	12q24.13	12	112049014	C12orf30	NAA25			80018			rs17696736-G	rs17696736	0	17696736	intron	0	NR	6E-18	17.22184874961635		NR	NR	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	12q13.2	12	56088396	ERBB3	ERBB3			2065			rs2292239-A	rs2292239	0	2292239	intron	0	NR	3E-16	15.52287874528034		NR	NR	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	16p13.13	16	11086016	CLEC16A	CLEC16A			23274			rs12708716-G	rs12708716	0	12708716	intron	0	NR	7E-13	12.15490195998574		NR	NR	Affymetrix[up to 335,565]	N
11/25/2008	18978792	Cooper JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978792?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	18p11.21	18	12779948	PTPN2	CEP76 - PTPN2	79959	5771		       77.17	        5.53	rs2542151-C	rs2542151	0	2542151	Intergenic	1	NR	9E-8	7.045757490560674		NR	NR	Affymetrix[up to 335,565]	N
12/09/2008	18978790	McKay JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978790?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Lung cancer susceptibility locus at 5p15.33.	Lung cancer	2,971 European ancestry cases, 3,746 European ancestry controls	2,899 European ancestry cases, 5,573 European ancestry controls	5p15.33	5	1320607	TERT, CLPTM1L	CLPTM1L			81037			rs402710-C	rs402710	0	402710	intron	0	NR	4E-6	5.397940008672037		   1.18	[1.12-1.24] 	Illumina[315,194]	N
12/09/2008	18978790	McKay JD	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978790?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Lung cancer susceptibility locus at 5p15.33.	Lung cancer	2,971 European ancestry cases, 3,746 European ancestry controls	2,899 European ancestry cases, 5,573 European ancestry controls	15q25.1	15	78601997	Intergenic	CHRNA3			1136			rs1051730-A	rs1051730	0	1051730	STOP-GAIN	0	NR	1E-15	15		   1.35	[1.25-1.45] 	Illumina[315,194]	N
11/25/2008	18978787	Wang Y	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978787?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry cases	2,448 European ancestry cases, 2,983 European ancestry controls	6p21.33	6	31652743	BAT3,MSH5	BAG6;APOM			7917;55937			rs3117582-C	rs3117582	0	3117582	intron;intron	0	NR	5E-10	9.301029995663981		   1.24	[1.16-1.33] 	Illumina[223,891]	N
11/25/2008	18978787	Wang Y	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978787?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry cases	2,448 European ancestry cases, 2,983 European ancestry controls	5p15.33	5	1321972	CLPTM1L	CLPTM1L			81037			rs401681-G	rs401681	0	401681	intron	0	NR	8E-9	8.096910013008056	 	   1.15	[1.09-1.19] 	Illumina[223,891]	N
11/25/2008	18978787	Wang Y	11/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18978787?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry cases	2,448 European ancestry cases, 2,983 European ancestry controls	15q25.1	15	78615690	NR	CHRNA3			1136			rs8042374-?	rs8042374	0	8042374	intron	0	NR	8E-12	11.09691001300806	 	NR	NR	Illumina[223,891]	N
12/09/2008	18976728	Bertram L	10/29/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18976728?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis reveals putative Alzheimer's disease susceptibility loci in addition to APOE.	Alzheimer's disease	941 European ancestry cases and 404 European ancestry controls from 410 families	1,767 European ancestry cases and 838 European ancestry controls from 875 families	14q31.2	14	84308865	Intergenic	RNU7-51P - RNU3P3	100151647	26843		     1260.23	      963.04	rs11159647-?	rs11159647	0	11159647	Intergenic	1	NR	2E-6	5.698970004336018		NR	NR	Affymetrix[484,522]	N
12/09/2008	18976728	Bertram L	10/29/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18976728?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide association analysis reveals putative Alzheimer's disease susceptibility loci in addition to APOE.	Alzheimer's disease	941 European ancestry cases and 404 European ancestry controls from 410 families	1,767 European ancestry cases and 838 European ancestry controls from 875 families	19q13.41	19	51223357	CD33	CD33			945			rs3826656-?	rs3826656	0	3826656	nearGene-5	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix[484,522]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1p35.2	1	30154865	Intergenic	PTPRU - MATN1	10076	4146		      828.05	      556.41	rs2180233-C	rs2180233	0	2180233	Intergenic	1	0.31	9E-6	5.045757490560675		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1q23.1	1	157160775	ETV3L, ETV3	CYCSP52 - FCRL5	360155	83416		       32.10	      352.60	rs6427356-G	rs6427356	0	6427356	Intergenic	1	0.28	8E-6	5.096910013008055		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1q25.3	1	183883780	RGL1, GLT25D2	RGL1			23179			rs10797919-G	rs10797919	0	10797919	intron	0	0.59	9E-6	5.045757490560675		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1q42.13	1	230539080	LOC729257	PGBD5 - RPS24P4	79605	729257		      113.15	       72.86	rs701157-C	rs701157	0	701157	Intergenic	1	0.45	4E-6	5.397940008672037		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	2p22.3	2	34255008	Intergenic	SLC25A5P2 - MIR548AD	344371	100616475		      414.27	     1216.40	rs6733379-G	rs6733379	0	6733379	Intergenic	1	0.28	4E-6	5.397940008672037		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	2p12	2	77848118	Intergenic	LOC101927967			101927967			rs7595103-A	rs7595103	0	7595103	intron	0	0.64	7E-6	5.154901959985742		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	2q33.1	2	202085128	FLJ39061, FZD7	LOC729224;LOC100652824			729224;100652824			rs1521882-A	rs1521882	0	1521882	intron;intron	0	0.82	8E-6	5.096910013008055		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	5q31.1	5	133867905	C5orf15	MIR1289-2 - C5orf15	100302134	56951		      440.20	       87.60	rs1644305-A	rs1644305	0	1644305	Intergenic	1	0.41	8E-6	5.096910013008055		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	7q31.1	7	112988318	FLJ31818, GPR85	LOC101928036			101928036			rs10229603-C	rs10229603	0	10229603	intron	0	0.31	5E-6	5.301029995663981		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	8q22.3	8	100907093	YWHAZ	RPS26P6 - YWHAZ	392256	7534		       10.89	       11.48	rs931812-C	rs931812	0	931812	Intergenic	1	0.74	5E-6	5.301029995663981		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	9p24.1	9	8235633	PTPRD	TMEM261 - PTPRD	90871	5789		      435.83	       78.61	rs10815798-A	rs10815798	0	10815798	Intergenic	1	0.48	6E-6	5.221848749616356		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	10p15.2	10	3241815	PITRM1	PITRM1-AS1 - KLF6	100507034	1316		       93.19	      534.18	rs2764980-A	rs2764980	0	2764980	Intergenic	1	0.51	9E-6	5.045757490560675		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	11q21	11	94934799	AMOTL1, CWC15, JMJD2D	ST13P11 - CWC15	728162	51503		       20.66	       27.82	rs10831284-G	rs10831284	0	10831284	Intergenic	1	0.13	2E-6	5.698970004336018		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	11q24.2	11	126749295	KIRREL3	KIRREL3			84623			rs1557488-T	rs1557488	0	1557488	intron	0	0.18	5E-6	5.301029995663981		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	12q15	12	69938047	C12orf28	MYRFL			196446			rs789560-G	rs789560	0	789560	intron	0	0.87	7E-6	5.154901959985742		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	12q21.2	12	79668450	PAWR	PAWR			5074			rs7297018-A	rs7297018	0	7297018	intron	0	0.19	4E-6	5.397940008672037		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	13q12.2	13	27855601	GSX1, PDX1	PDX1-AS1			100861550			rs9512900-C	rs9512900	0	9512900	intron	0	0.37	9E-6	5.045757490560675		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	13q33.3	13	108163877	LIG4, ABHD13	FAM155A-IT1 - LIG4	100874375	3981		      328.42	       43.57	rs10492664-C	rs10492664	0	10492664	Intergenic	1	0.84	1E-6	5.999999999999999		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	14q12	14	26790837	Intergenic	LOC101927062			101927062			rs1951082-T	rs1951082	0	1951082	intron	0	0.43	5E-6	5.301029995663981		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	15q26.2	15	96719197	SPATA8	RPL31P55 - FAM149B1P1	100128250	388181		      270.67	       37.79	rs4533251-T	rs4533251	0	4533251	Intergenic	1	0.15	4E-6	5.397940008672037		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16p13.3	16	6860384	A2BP1	RBFOX1			54715			rs12921846-A	rs12921846	0	12921846	intron	0	0.40	9E-6	5.045757490560675		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16q21	16	63921543	Intergenic	RPS15AP34 - CDH11	390735	1009		      570.40	      961.35	rs1381102-A	rs1381102	0	1381102	Intergenic	1	0.40	6E-6	5.221848749616356		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16q22.2	16	71931293	PKD1L3, KIAA0174, DHODH	PKD1L3			342372			rs16973500-C	rs16973500	0	16973500	intron	0	0.86	7E-6	5.154901959985742		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16q23.2	16	81122917	PKD1L2, C16orf46	PKD1L2			114780			rs4889240-T	rs4889240	0	4889240	intron	0	0.45	7E-6	5.154901959985742		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	18q21.31	18	57766970	ATP8B1	ATP8B1			5205			rs7236632-A	rs7236632	0	7236632	intron	0	0.86	6E-6	5.221848749616356		NR	NR	Perlegen[378,332]	N
12/09/2008	18951430	Anney RJ	10/24/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18951430?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	21q21.1	21	20512990	Intergenic	RPS3AP1 - LINC00320	101241875	387486		       82.23	      229.60	rs2826340-T	rs2826340	0	2826340	Intergenic	1	0.17	2E-6	5.698970004336018		NR	NR	Perlegen[378,332]	N
12/01/2008	18952825	Johansson A	10/24/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/18952825?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide association analysis.	Height	3,009 European ancestry individuals, 916 Dutch individuals	Up to 39,859 European ancestry individuals, Up to 1,148 African American individuals	7p15.1	7	28149792	JAZF1	JAZF1			221895			rs1635852-A	rs1635852	0	1635852	intron	0	NR	9E-10	9.045757490560675		    .25	 [0.17-0.33] cm taller	Illumina[NR]	N
12/09/2008	18941528	Comabella M	10/22/2008	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/18941528?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Identification of a novel risk locus for multiple sclerosis at 13q31.3 by a pooled genome-wide scan of 500,000 single nucleotide polymorphisms.	Multiple sclerosis	242 European ancestry cases, 242 European ancestry controls	553 European ancestry cases, 1,033 European ancestry controls	6p21.32	6	32368410	HLA-DRB1	C6orf10			10665			rs3129934-T	rs3129934	0	3129934	intron	0	NR	9E-11	10.04575749056067		   3.30	[2.3-4.9] 	Affymetrix[428,867](pooled)	N
11/25/2008	18849994	Hillmer AM	10/12/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18849994?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Susceptibility variants for male-pattern baldness on chromosome 20p11.	Male-pattern baldness	296 European ancestry cases, 347 European ancestry controls	319 European ancestry cases, 234 European ancestry controls	20p11.22	20	21872462	PAX1, BQ013595, BE789145	RPL41P1 - LINC00261	22971	140828		      116.81	      688.09	rs2180439-C	rs2180439	0	2180439	Intergenic	1	0.43	3E-15	14.52287874528034	 	   1.82	[1.45-2.30] 	Illumina[531,695]	N
11/25/2008	18849991	Richards JB	10/12/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18849991?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Male-pattern baldness susceptibility locus at 20p11.	Male-pattern baldness	578 European ancestry cases, 547 European ancestry controls	1,351 European ancestry cases, 2,485 European ancestry controls	20p11.22	20	22069865	PAX1	LOC100270679			100270679			rs1160312-A	rs1160312	0	1160312	intron	0	0.43	1E-14	14	(males)	   1.60	[1.42-1.80] (males)	Affymetrix[370,102]	N
11/25/2008	18849991	Richards JB	10/12/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18849991?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Male-pattern baldness susceptibility locus at 20p11.	Male-pattern baldness	578 European ancestry cases, 547 European ancestry controls	1,351 European ancestry cases, 2,485 European ancestry controls	Xq12	23	67291142	AR	EDA2R - AR	60401	367		      651.84	      252.89	rs6625163-A	rs6625163	0	6625163	Intergenic	1	NR	5E-11	10.30102999566398		   3.30	[2.31-4.71] 	Affymetrix[370,102]	N
11/25/2008	18849993	Stacey SN	10/12/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18849993?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants on 1p36 and 1q42 are associated with cutaneous basal cell carcinoma but not with melanoma or pigmentation traits.	Basal cell carcinoma 	930 European ancestry cases, 33,117 European ancestry controls	1,216 European ancestry cases, 2,844 European ancestry controls	1p36.13	1	17395867	PADI4, PADI6,RCC2, ARHGEF10L	PADI6			353238			rs7538876-A	rs7538876	0	7538876	intron	0	0.35	4E-12	11.39794000867204		   1.28	[1.19-1.37] 	Illumina[304,083]	N
11/25/2008	18849993	Stacey SN	10/12/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18849993?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants on 1p36 and 1q42 are associated with cutaneous basal cell carcinoma but not with melanoma or pigmentation traits.	Basal cell carcinoma 	930 European ancestry cases, 33,117 European ancestry controls	1,216 European ancestry cases, 2,844 European ancestry controls	1q42.13	1	228862088	RHOU	FTH1P2 - ISCA1P2	2497	100288517		      174.21	      180.00	rs801114-G	rs801114	0	801114	Intergenic	1	0.33	6E-12	11.22184874961635	 	   1.28	[1.19-1.37] 	Illumina[304,083]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	10q24.2	10	100101678	CPN1, CHUK, ERLIN1	CPN1 - TPM4P1	1369	644566		       19.79	       12.74	rs11597390-A	rs11597390	0	11597390	Intergenic	1	0.36	2E-8	7.698970004336018	(ALT)	    .04	[0.025-0.053] U/L decrease	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	12q24.31	12	121004867	HNF1A, C12orf27, C12orf43	C12orf43			64897			rs1169313-C	rs1169313	0	1169313	intron	0	0.38	2E-10	9.698970004336017	(GGT)	    .01	[0.003-0.007] U/L decrease	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	10q21.3	10	63361805	JMJD1C	JMJD1C			221037			rs12355784-A	rs12355784	0	12355784	intron	0	0.48	5E-10	9.301029995663981	(ALP)	    .03	[0.017-0.033] U/L increase	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	10q21.3	10	63515167	REEP3	JMJD1C			221037			rs10761779-G	rs10761779	0	10761779	intron	0	0.49	7E-10	9.154901959985741	(ALP)	    .03	[0.017-0.033] U/L increase	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	1q24.1	1	167187263	POU2F1	RBSG4			101928484			rs9803659-C	rs9803659	0	9803659	intron	0	NR	4E-6	5.397940008672037	(ALT)	    .03	[0.018-0.042] U/L decrease	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	9q34.2	9	133458632	ADAMTS13	ADAMTS13;CACFD1			11093;11094			rs4962153-A	rs4962153	0	4962153	intron;nearGene-5	0	NR	8E-21	20.09691001300805	(ALP)	    .06	[0.048-0.072] U/L decrease	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	22q13.31	22	43936690	PNPLA3, SAMM50	PNPLA3			80339			rs2281135-T	rs2281135	0	2281135	intron	0	0.18	8E-16	15.09691001300805	(ALT)	    .06	[0.046-0.074] U/L increase	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	1p36.12	1	21495264	NBPF3, ALPL, RAP1GAP	PFN1P10 - ALPL	767853	249		       35.06	       13.72	rs1780324-T	rs1780324	0	1780324	Intergenic	1	0.43	7E-15	14.15490195998574	(ALP)	    .03	[0.023-0.039] U/L increase	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	9q34.2	9	133263862	ABO	ABO			28			rs657152-T	rs657152	0	657152	intron	0	0.39	2E-30	29.69897000433602	(ALP)	    .05	[0.039-0.055] U/L decrease	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	6p22.3	6	24441518	GPLD1	GPLD1			2822			rs9467160-A	rs9467160	0	9467160	intron	0	0.24	1E-11	11	(ALP)	    .03	[0.024-0.044] U/L increase	Affymetrix and Illumina[up to 496,032]	N
12/01/2008	18940312	Yuan X	10/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18940312	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	22q11.23	22	24594246	GGT1, C22orf36	GGT1;LRRC75B			2678;388886			rs4820599-G	rs4820599	0	4820599	intron;nearGene-5	0	0.31	4E-11	10.39794000867204	(GGT)	    .01	[0.005-0.009] U/L increase	Affymetrix and Illumina[up to 496,032]	N
11/25/2008	18840781	Grant SF	10/07/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/18840781?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	1p22.3	1	84845509	EDG7	LPAR3			23566			rs1983853-?	rs1983853	0	1983853	intron	0	NR	2E-6	5.698970004336018	 	   1.20	[1.11-1.29] 	Illumina[up to 1,000,000]	N
11/25/2008	18840781	Grant SF	10/07/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/18840781?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	6q15	6	90247744	BACH2	BACH2			60468			rs3757247-A	rs3757247	0	3757247	intron	0	NR	1E-6	5.999999999999999	 	   1.13	[1.08-1.19] 	Illumina[up to 1,000,000]	N
11/25/2008	18840781	Grant SF	10/07/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/18840781?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	9p24.2	9	4292083	GLIS3	GLIS3			169792			rs10758593-A	rs10758593	0	10758593	intron	0	NR	3E-6	5.522878745280337	 	   1.13	[1.07-1.19] 	Illumina[up to 1,000,000]	N
11/25/2008	18840781	Grant SF	10/07/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/18840781?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	15q14	15	38546063	RASGRP1	RASGRP1			10125			rs8035957-C	rs8035957	0	8035957	intron	0	NR	4E-6	5.397940008672037	 	   1.14	[1.08-1.21] 	Illumina[up to 1,000,000]	N
11/25/2008	18840781	Grant SF	10/07/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/18840781?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	21q22.3	21	42416281	UBASH3A	UBASH3A			53347			rs9976767-C	rs9976767	0	9976767	intron	0	NR	2E-8	7.698970004336018	 	   1.16	[1.10-1.22] 	Illumina[up to 1,000,000]	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	9q34.13	9	132742896	C9orf98	AK8			158067			rs11243897-?	rs11243897	0	11243897	intron	0	NR	6E-8	7.221848749616355		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	2q14.2	2	119564241	MGC33657	PCDP1			200373			rs2587695-?	rs2587695	0	2587695	intron	0	NR	3E-7	6.522878745280337		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	3p22.1	3	39514089	MOBP	MOBP			4336			rs864643-?	rs864643	0	864643	ncRNA	0	NR	1E-8	8		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	5q13.2	5	72114529	MAP1B	MAP1B			4131			rs2199161-?	rs2199161	0	2199161	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	10q22.1	10	71223228	UNC5B	UNC5B			219699			rs16928529-?	rs16928529	0	16928529	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	15q26.1	15	90907211	MAN2A2	MAN2A2			4122			rs2677744-?	rs2677744	0	2677744	intron	0	NR	1E-6	5.999999999999999		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	15q26.1	15	93493459	AK094352	SEPHS1P2 - MCTP2	100420292	55784		       62.24	      738.08	rs7175404-?	rs7175404	0	7175404	Intergenic	1	NR	6E-7	6.221848749616355		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	9q33.1	9	116571404	ASTN2	ASTN2			23245			rs10983238-?	rs10983238	0	10983238	intron	0	NR	1E-7	7		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	1p35.1	1	33894257	CSMD2	CSMD2			114784			rs2281597-?	rs2281597	0	2281597	intron	0	NR	5E-7	6.30102999566398		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	9q34.11	9	128214278	DNM1	DNM1			1759			rs2502731-?	rs2502731	0	2502731	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	22q11.22	22	21953147	PPM1F	PPM1F			9647			rs412050-?	rs412050	0	412050	nearGene-5	0	NR	6E-6	5.221848749616356		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	10q25.1	10	104206646	C10orf79	WDR96			80217			rs515910-?	rs515910	0	515910	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	17p13.2	17	3761681	ITGAE	ITGAE			3682			rs220470-?	rs220470	0	220470	intron	0	NR	1E-7	7		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	12q23.3	12	103799046	NT5DC3	NT5DC3			51559			rs4964805-?	rs4964805	0	4964805	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	2q33.3	2	208129321	CRYGC	CRYGC;LOC100507443			1420;100507443			rs2242073-?	rs2242073	0	2242073	intron;intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	20q11.22	20	35261376	MMP24	MMP24			10893			rs1555322-?	rs1555322	0	1555322	intron	0	NR	4E-6	5.397940008672037		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	15q23	15	68422693	ITGA11	ITGA11			22801			rs7164335-?	rs7164335	0	7164335	intron	0	NR	1E-7	7		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	13q31.3	13	93756253	GPC6	GPC6			10082			rs7995215-?	rs7995215	0	7995215	intron	0	NR	1E-8	8		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	2p25.3	2	1922221	MYT1L	MYT1L			23040			rs2241685-?	rs2241685	0	2241685	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	5q22.2	5	112907271	REEP5	REEP5			7905			rs469727-?	rs469727	0	469727	intron	0	NR	8E-6	5.096910013008055		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	10q24.1	10	96375748	TLL2	TLL2			7093			rs10786284-?	rs10786284	0	10786284	intron	0	NR	2E-6	5.698970004336018		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	7p15.1	7	28723346	CREB5	CREB5			9586			rs2237349-?	rs2237349	0	2237349	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	16q24.1	16	84412778	ATP2C2	ATP2C2			9914			rs10514604-?	rs10514604	0	10514604	intron	0	NR	8E-7	6.096910013008056		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	6p21.1	6	41682998	TFEB	TRNAI25			100189401			rs2842643-?	rs2842643	0	2842643		0	NR	3E-6	5.522878745280337		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	16q23.3	16	82713332	CDH13	CDH13			1012			rs11646411-?	rs11646411	0	11646411	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix [504,219](pooled)	N
05/07/2009	18839057	Lesch KP	10/07/2008	J Neural Transm	http://www.ncbi.nlm.nih.gov/pubmed/18839057?ordinalpos=16&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	6p21.1	6	44869619	SUPT3H	SUPT3H			8464			rs3799977-?	rs3799977	0	3799977	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix [504,219](pooled)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (interaction)	909 European ancestry trios	NA	21q21.1	21	19164331	Intergenic	PPIAP22 - SLC6A6P1	653214	54019		      306.06	       80.06	rs2825388-A	rs2825388	0	2825388	Intergenic	1	0.40	8E-6	5.096910013008055	(int, MC)	   1.06	[NR] unit increase	Perlegen[429,981]	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (interaction)	909 European ancestry trios	NA	11q21	11	94579157	PIWIL4	PIWIL4			143689			rs2212361-C	rs2212361	0	2212361	intron	0	0.26	9E-7	6.045757490560675	(int, MW)	    .97	[NR] unit decrease	Perlegen[429,981]	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (interaction)	909 European ancestry trios	NA	13q12.3	13	28857201	Intergenic	POM121L13P - MTUS2	100874379	23281		       78.26	      167.41	rs1161463-C	rs1161463	0	1161463	Intergenic	1	0.79	2E-6	5.698970004336018	(int, MW)	   1.72	[NR] unit decrease	Perlegen[429,981]	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (interaction)	909 European ancestry trios	NA	6p21.2	6	39571431	KIF6	KIF6			221458			rs4714261-T	rs4714261	0	4714261	intron	0	0.17	2E-6	5.698970004336018	(int, MW)	    .95	[NR] unit increase	Perlegen[429,981]	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (interaction)	909 European ancestry trios	NA	3q27.2	3	185968952	Intergenic	LOC344887			344887			rs10049246-G	rs10049246	0	10049246	intron	0	0.59	8E-6	5.096910013008055	(int, MW)	    .60	[NR] unit increase	Perlegen[429,981]	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (interaction)	909 European ancestry trios	NA	8p23.2	8	5604231	Intergenic	RPL23AP54 - MCPH1	100271466	79648		      127.26	      802.36	rs4875598-G	rs4875598	0	4875598	Intergenic	1	0.34	9E-6	5.045757490560675	(int, MW)	    .94	[NR] unit decrease	Perlegen[429,981]	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (interaction)	909 European ancestry trios	NA	14q24.3	14	76346148	Intergenic	ESRRB			2103			rs2360997-C	rs2360997	0	2360997	intron	0	0.86	8E-6	5.096910013008055	(int, MW)	   1.30	[NR] unit decrease	Perlegen[429,981]	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	2p21	2	41777857	Intergenic	HNRNPA1P57 - LDHAP3	101060039	442013		      620.24	       41.79	rs719593-T	rs719593	0	719593	Intergenic	1	0.86	5E-6	5.301029995663981	(int, MC)	   2.05	[NR] unit decrease	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	4q22.1	4	88282518	PPM1K	PPM1K			152926			rs893971-T	rs893971	0	893971	intron	0	0.60	7E-6	5.154901959985742	(int, MC)	   1.15	[NR] unit decrease	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	15q26.2	15	95613139	Intergenic	LINC00924 - NR2F2-AS1	145820	644192		      105.29	      653.25	rs4321143-G	rs4321143	0	4321143	Intergenic	1	0.28	7E-6	5.154901959985742	(int, MC)	   1.13	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	6q15	6	88266258	Intergenic	RPS14P9 - ACTBP8	644119	68		         .67	        9.05	rs16880441-G	rs16880441	0	16880441	Intergenic	1	0.08	9E-6	5.045757490560675	(int, MC)	   1.63	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	11q23.2	11	114091040	ZBTB16	ZBTB16			7704			rs17116334-T	rs17116334	0	17116334	intron	0	0.16	9E-6	5.045757490560675	(int, MC)	   1.30	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	5q21.1	5	101612841	Intergenic	GTF3AP4 - OR7H2P	100420593	403301		      340.22	      203.04	rs13188771-A	rs13188771	0	13188771	Intergenic	1	0.17	2E-6	5.698970004336018	(int, MW)	   4.24	[NR] unit decrease	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	16p13.3	16	6063660	A2BP1	RBFOX1			54715			rs6500744-C	rs6500744	0	6500744	intron	0	0.53	3E-6	5.522878745280337	(int, MW)	    .91	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	4q23	4	99329262	ADH1C	ADH1B - ADH1C	125	126		        7.82	        7.23	rs1789891-A	rs1789891	0	1789891	Intergenic	1	0.14	3E-6	5.522878745280337	(int, MW)	   1.47	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	8p23.1	8	8859497	MFHAS1	MFHAS1			9258			rs332034-A	rs332034	0	332034	intron	0	0.85	6E-6	5.221848749616356	(int, MW)	   1.05	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	3p25.3	3	10998753	SLC6A1	SLC6A1			6529			rs9990174-T	rs9990174	0	9990174	intron	0	0.33	6E-6	5.221848749616356	(int, MW)	   2.52	[NR] unit decrease	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	10q22.3	10	78341104	Intergenic	LINC00856	414243	283050	100132987	       60.89	      602.22	rs2395528-T	rs2395528	0	2395528		0	0.23	6E-6	5.221848749616356	(int, MW)	   1.46	[NR] unit decrease	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	1q22	1	155898834	RIT1	RIT1			6016			rs2282301-A	rs2282301	0	2282301	UTR-3	0	0.23	7E-6	5.154901959985742	(int, MW)	   2.88	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	18q12.3	18	43228833	Intergenic	RIT2 - SYT4	6014	6860		      113.14	       39.06	rs17664267-T	rs17664267	0	17664267	Intergenic	1	0.19	7E-6	5.154901959985742	(int, MW)	   1.39	[NR] unit increase	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	17q22	17	53160580	Intergenic	C17orf112 - RPS2P48	100506650	645173		      172.93	      596.36	rs8073783-C	rs8073783	0	8073783	Intergenic	1	0.49	8E-6	5.096910013008055	(int, MW)	   1.76	[NR] unit decrease	Perlegen [429,901)	N
12/09/2008	18846501	Sonuga-Barke EJ	10/07/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846501?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (interaction)	909 European ancestry trios	NA	2p22.2	2	37749874	Intergenic	CDC42EP3 - LINC00211	10602	101929559		       77.34	       76.37	rs604381-A	rs604381	0	604381	Intergenic	1	0.32	8E-6	5.096910013008055	(int, MW)	   1.26	[NR] unit increase	Perlegen [429,901)	N
11/25/2008	18836448	Franke A	10/05/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18836448?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	6p21.32	6	32463370	HLA-DRA, BTNL2	TRNAI25			100189401			rs9268877-T	rs9268877	0	9268877		0	0.45	6E-18	17.22184874961635	 	   1.45	[1.33-1.58] 	Affymetrix[355,262]	N
11/25/2008	18836448	Franke A	10/05/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18836448?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	1q32.1	1	206766559	IL10	RPS14P1 - IL10	100271063	3586		       70.26	        1.04	rs3024505-T	rs3024505	0	3024505	Intergenic	1	0.15	1E-12	12	 	   1.46	[1.31-1.62] 	Affymetrix[355,262]	N
10/14/2009	19802338	Chasman DI	10/01/2008	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/19802338	Genetic loci associated with plasma concentration of low-density lipoprotein cholesterol, high-density lipoprotein cholesterol, triglycerides, apolipoprotein A1, and Apolipoprotein B among 6382 white women in genome-wide analysis with replication.	Lipid traits	6,382 European ancestry women	970 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina [314,518]	N
11/25/2008	18834626	Dehghan A	10/01/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18834626?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study.	Urate levels	11,847 European ancestry individuals	11,024 European ancestry individuals, 3,843 African American individuals	4q22.1	4	88131171	ABCG2	ABCG2			9429			rs2231142-?	rs2231142	0	2231142	missense	0	0.11	3E-60	59.52287874528033	(whites)	    .24	[0.20-0.28] SD increase in serum uric acid level	Affymetrix and Illumina[up to 530,683]	N
11/25/2008	18834626	Dehghan A	10/01/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18834626?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study.	Urate levels	11,847 European ancestry individuals	11,024 European ancestry individuals, 3,843 African American individuals	6p22.2	6	25870314	SLC17A3	SLC17A3			10786			rs1165205-?	rs1165205	0	1165205	intron	0	0.47	4E-29	28.39794000867204	(whites)	    .09	[0.07-0.11] SD decrease in serum uric acid level	Affymetrix and Illumina[up to 530,683]	N
11/25/2008	18834626	Dehghan A	10/01/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18834626?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study.	Urate levels	11,847 European ancestry individuals	11,024 European ancestry individuals, 3,843 African American individuals	4p16.1	4	9920543	SLC2A9	SLC2A9			56606			rs16890979-T	rs16890979	0	16890979	missense	0	0.23	7E-168	167.1549019599857	(whites)	    .34	[0.30-0.38] SD decrease in serum uric acid level	Affymetrix and Illumina[up to 530,683]	N
12/09/2008	18991354	Gretarsdottir S	10/01/2008	Ann Neurol	http://www.ncbi.nlm.nih.gov/pubmed/18991354?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Risk variants for atrial fibrillation on chromosome 4q25 associate with ischemic stroke.	Stroke (ischemic)	1,661 European ancestry cases, 10,815 European ancestry controls	4,576 European ancestry cases, 19,343 European ancestry controls	4q25	4	110789013	NR	PITX2 - MIR297	5308	100126354		      146.89	       71.57	rs2200733-T	rs2200733	0	2200733	Intergenic	1	0.11	2E-10	9.698970004336017		   1.26	[1.17-1.35] 	Illumina[310,881]	N
01/13/2010	20031538	Heid IM	10/01/2008	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031538	Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.	HDL cholesterol	Up to 4,274 European ancestry individuals	Up to 15,873 European ancestry individuals	16q13	16	56951227	CETP	HERPUD1 - CETP	9709	1071		        7.35	       10.70	rs9989419-A	rs9989419	0	9989419	Intergenic	1	0.38	9E-27	26.04575749056067		   2.66	[NR] mg/dl decrease	Affymetrix [Up to 2,557,253] (imputed)	N
01/13/2010	20031538	Heid IM	10/01/2008	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031538	Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.	HDL cholesterol	Up to 4,274 European ancestry individuals	Up to 15,873 European ancestry individuals	8p21.3	8	19975135	LPL	LPL - RPL30P9	4023	100270981		        7.88	      138.20	rs17482753-T	rs17482753	0	17482753	Intergenic	1	0.11	3E-11	10.52287874528034		   2.02	[NR] mg/dl increase	Affymetrix [Up to 2,557,253] (imputed)	N
01/13/2010	20031538	Heid IM	10/01/2008	Circ Cardiovasc Genet	http://www.ncbi.nlm.nih.gov/pubmed/20031538	Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.	HDL cholesterol	Up to 4,274 European ancestry individuals	Up to 15,873 European ancestry individuals	18q21.1	18	49632720	LIPG	LIPG - SMUG1P1	9388	100129143		       39.81	       17.63	rs7240405-A	rs7240405	0	7240405	Intergenic	1	0.15	5E-10	9.301029995663981		   2.27	[NR] mg/dl decrease	Affymetrix [Up to 2,557,253] (imputed)	N
11/25/2008	18835860	Mushiroda T	10/01/2008	J Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/18835860	A genome-wide association study identifies an association of a common variant in TERT with susceptibility to idiopathic pulmonary fibrosis.	Idiopathic pulmonary fibrosis	159 Japanese ancestry cases, 934 Japanese ancestry controls	83 Japanese ancestry cases, 535 Japanese ancestry controls	5p15.33	5	1286401	TERT	TERT			7015			rs2736100-A	rs2736100	0	2736100	intron	0	0.41	3E-8	7.522878745280337	 	   2.11	[1.61-2.78] 	Illumina [214,508]	N
11/25/2008	18823527	Abraham R	09/29/2008	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/18823527?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study for late-onset Alzheimer's disease using DNA pooling.	Alzheimer's disease	1,082 European ancestry cases, 1,239 European ancestry controls	1,400 controls	4q32.1	4	154733269	Intergenic	LRAT			9227			rs727153-C	rs727153	0	727153	intron	0	0.52	3E-6	5.522878745280337		   1.63	[1.37-1.95] 	Illumina[561,494](pooled)	N
11/25/2008	18823527	Abraham R	09/29/2008	BMC Med Genomics	http://www.ncbi.nlm.nih.gov/pubmed/18823527?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A genome-wide association study for late-onset Alzheimer's disease using DNA pooling.	Alzheimer's disease	1,082 European ancestry cases, 1,239 European ancestry controls	1,400 controls	19q13.32	19	44878777	PVRL2, TOMM40, APOE	PVRL2			5819			rs6859-A	rs6859	0	6859	intron	0	NR	6E-14	13.22184874961636	 	NR	NR	Illumina[561,494](pooled)	N
11/25/2008	18820697	Miyagawa T	09/28/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18820697	Variant between CPT1B and CHKB associated with susceptibility to narcolepsy.	Narcolepsy	222 Japanese ancestry cases, 389 Japanese ancestry controls	274 East Asian ancestry cases, 499 East Asian ancestry controls, 388 European ancestry cases, 397 European ancestry controls, 86 African American cases, 98 African American controls	22q13.33	22	50578924	CPT1B	CHKB;CPT1B;CHKB-CPT1B			1120;1375;386593			rs5770917-C	rs5770917	0	5770917	nearGene-3;nearGene-5;intron	0	0.17	6E-8	7.221848749616355	 	   1.63	[1.37-1.95] 	Affymetrix[249,133]	N
11/25/2008	18821564	Mick E	09/26/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821564?ordinalpos=&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.SmartSearch&log$=citationsensor	Genome-wide association study of response to methylphenidate in 187 children with attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	105 European ancestry cases, 34 Hispanic cases, 26 African American cases, 22 Other ancestry cases	NA	22q13.31	22	47888765	Intergenic	LINC00898 - MIR3201	400932	100422916		      257.20	      385.60	rs9627183-C	rs9627183	0	9627183	Intergenic	1	0.03	3E-6	5.522878745280337	 	NR	NR	Affymetrix[319,722]	N
11/25/2008	18821564	Mick E	09/26/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18821564?ordinalpos=&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.SmartSearch&log$=citationsensor	Genome-wide association study of response to methylphenidate in 187 children with attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	105 European ancestry cases, 34 Hispanic cases, 26 African American cases, 22 Other ancestry cases	NA	5p15.31	5	6834054	Intergenic	MIR4278 - RNA5SP176	100422999	100873438		        6.13	      213.17	rs11134178-T	rs11134178	0	11134178	Intergenic	1	0.05	3E-6	5.522878745280337	 	NR	NR	Affymetrix[319,722]	N
12/09/2008	18802019	Burkhardt R	09/18/2008	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/18802019	Common SNPs in HMGCR in micronesians and whites associated with LDL-cholesterol levels affect alternative splicing of exon13.	LDL cholesterol	2,346 Micronesian ancestry individuals	NR	5q13.3	5	75329662	HMGCR	SUMO2P5 - HMGCR	100526738	3156		      103.99	        7.51	rs7703051-A	rs7703051	0	7703051	Intergenic	1	0.41	1E-8	8		  18.00	[NR] % s.d. increase	Affymetrix [~500,000]	N
12/09/2008	18802019	Burkhardt R	09/18/2008	Arterioscler Thromb Vasc Biol	http://www.ncbi.nlm.nih.gov/pubmed/18802019	Common SNPs in HMGCR in micronesians and whites associated with LDL-cholesterol levels affect alternative splicing of exon13.	LDL cholesterol	2,346 Micronesian ancestry individuals	NR	19q13.32	19	44919689	APOE, APOC1, APOC4, APOC2	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	NR	2E-7	6.698970004336019		NR	NR	Affymetrix [~500,000]	N
11/25/2008	18780872	Liu P	09/17/2008	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/18780872?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Familial aggregation of common sequence variants on 15q24-25.1 in lung cancer.	Lung cancer	194 European ancestry cases, 219 European ancestry controls	3,878 cases, 4,831 controls	15q25.1	15	78513681	LOC123688, PSMA4, CHRNA3, CHRNA5, CHRNB4	HYKK			123688			rs8034191-G	rs8034191	0	8034191	intron	0	NR	1E-8	8	 	   1.38	[1.17-1.64] 	Affymetrix[up to 722,376]	N
11/25/2008	18794855	Kiemeney LA	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794855?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,803 European ancestry cases, 34,336 European ancestry controls	2,165 European ancestry cases, 3,800 European ancestry controls	8q24.21	8	127705823	MYC, BC042052	CASC8 - CASC11	727677	100270680		      223.68	       24.51	rs9642880-T	rs9642880	0	9642880	Intergenic	1	0.45	9E-12	11.04575749056067	 	   1.22	[1.15-1.29] 	Illumina[302,140]	N
11/25/2008	18794855	Kiemeney LA	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794855?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,803 European ancestry cases, 34,336 European ancestry controls	2,165 European ancestry cases, 3,800 European ancestry controls	3q28	3	189928144	TP63	MIR944 - LEPREL1	100126340	55214		       98.14	       28.58	rs710521-A	rs710521	0	710521	Intergenic	1	0.73	1E-7	7	 	   1.19	[1.12-1.27] 	Illumina[302,140]	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	1p36.32	1	2622185	MMEL1,TNFRSF14	MMEL1			79258			rs3890745-T	rs3890745	0	3890745	intron	0	0.67	1E-7	7		   1.12	[NR] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	7q21.2	7	92617430	CDK6	CDK6			1021			rs42041-G	rs42041	0	42041	intron	0	0.24	4E-6	5.397940008672037	 	   1.11	[NR] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	9p13.3	9	34710263	CCL21	CCL21;LOC101929761			6366;101929761			rs2812378-G	rs2812378	0	2812378	nearGene-5;intron	0	0.34	3E-8	7.522878745280337	 	   1.12	[NR] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	12q13.3	12	57574932	KIF5A,PIP4K2C	KIF5A			3798			rs1678542-C	rs1678542	0	1678542	intron	0	0.37	9E-8	7.045757490560674		   1.12	[NR] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	20q13.12	20	46119308	CD40	CD40			958			rs4810485-G	rs4810485	0	4810485	intron	0	0.75	8E-9	8.096910013008056		   1.15	[NR] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	10p15.1	10	6351298	PRKCQ	DKFZp667F0711			399716			rs4750316-G	rs4750316	0	4750316	ncRNA	0	0.20	4E-6	5.397940008672037	 	   1.14	[NR] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	1p13.2	1	113761186	PTPN22	PHTF1			10745			rs6679677-?	rs6679677	0	6679677	nearGene-5	0	0.10	6E-42	41.22184874961635	 	   1.79	[1.65-1.94] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6p21.32	6	32696222	HLA-DRB1	TRNAI25			100189401			rs6457620-?	rs6457620	0	6457620		0	0.50	4E-186	185.397940008672		   2.55	[2.40-2.71] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18794853	Raychaudhuri S	09/14/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18794853?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	6q23.3	6	137685367	OLIG3, TNFIP3	BTF3L4P3 - TNFAIP3	391040	7128		      140.92	      181.82	rs6920220-?	rs6920220	0	6920220	Intergenic	1	0.22	2E-9	8.698970004336019		   1.24	[1.16-1.32] 	Illumina[818,728]Affymetrix[~340,000](imputed)	N
11/25/2008	18760390	Huyghe JR	09/12/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18760390?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide SNP-based linkage scan identifies a locus on 8q24 for an age-related hearing impairment trait.	Hearing impairment	1,081 European ancestry individuals from 200 sibships	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[169,154]	N
11/25/2008	18776929	Liu YZ	09/08/2008	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/18776929?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Identification of PLCL1 gene for hip bone size variation in females in a genome-wide association study.	Hip bone size	501 European ancestry women, 499 European ancestry men	1,216 European ancestry women	2q33.1	2	198097519	PLCL1	PLCL1			5334			rs7595412-A	rs7595412	0	7595412	intron	0	0.89	2E-6	5.698970004336018	 	   5.00	[NR] cm2 increase in hip bone size on women	Affymetrix[306,823]	N
11/25/2008	18776911	Hazra A	09/07/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18776911?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Common variants of FUT2 are associated with plasma vitamin B12 levels.	Vitamin B12 levels	1,658 European ancestry women	1,059 European ancestry women	19q13.33	19	48703160	FUT2	FUT2			2524			rs492602-G	rs492602	0	492602	cds-synon	0	0.49	5E-17	16.30102999566398		    .09	[0.07-0.11] pg/ml decrease	Illumina[528,134]	N
11/25/2008	18759275	McArdle PF	09/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18759275?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish women, 460 Old Order Amish men	Framingham Heart Study (Sample size NR)	4p16.1	4	9920543	GLUT9	SLC2A9			56606			rs16890979-?	rs16890979	0	16890979	missense	0	NR	1E-11	11		    .44	[0.32-0.56] mg/dl decrease in uric serum levels	Affymetrix[361,034]	N
11/25/2008	18759275	McArdle PF	09/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18759275?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish women, 460 Old Order Amish men	Framingham Heart Study (Sample size NR)	13q33.1	13	103317141	NR	SLC10A2 - ATP6V1G1P7	6555	100874514		      250.30	      126.88	rs4771450-?	rs4771450	0	4771450	Intergenic	1	NR	2E-6	5.698970004336018	 	    .23	[NR] mg/dl decrease in uric acid levels	Affymetrix[361,034]	N
11/25/2008	18759275	McArdle PF	09/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18759275?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish women, 460 Old Order Amish men	Framingham Heart Study (Sample size NR)	2q31.1	2	170876715	NR	GAD1 - GORASP2	2571	26003		       15.56	       51.72	rs4668338-?	rs4668338	0	4668338	Intergenic	1	NR	3E-6	5.522878745280337	 	   4.29	[NR] mg/dl decrease in uric acid levels	Affymetrix[361,034]	N
11/25/2008	18759275	McArdle PF	09/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18759275?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish women, 460 Old Order Amish men	Framingham Heart Study (Sample size NR)	13q14.11	13	44053652	NR	LINC00284 - SMIM2-AS1	121838	101929212		       23.19	       56.90	rs17065323-?	rs17065323	0	17065323	Intergenic	1	NR	4E-6	5.397940008672037	 	   4.29	[NR] mg/dl decrease in uric acid levels	Affymetrix[361,034]	N
11/25/2008	18759275	McArdle PF	09/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18759275?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish women, 460 Old Order Amish men	Framingham Heart Study (Sample size NR)	3p25.1	3	15399049	NR	METTL6			131965			rs6442522-?	rs6442522	0	6442522	intron	0	NR	5E-6	5.301029995663981	 	    .05	[NR] mg/dl increase in uric acid levels	Affymetrix[361,034]	N
11/25/2008	18759275	McArdle PF	09/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18759275?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish women, 460 Old Order Amish men	Framingham Heart Study (Sample size NR)	20p12.3	20	7199409	NR	LOC101929265			101929265			rs6085920-?	rs6085920	0	6085920	intron	0	NR	6E-6	5.221848749616356	 	    .40	[NR] mg/dl decrease in uric acid levels	Affymetrix[361,034]	N
11/25/2008	18759275	McArdle PF	09/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18759275?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish women, 460 Old Order Amish men	Framingham Heart Study (Sample size NR)	5q31.3	5	143062229	NR	ARHGAP26			23092			rs3776331-?	rs3776331	0	3776331	intron	0	NR	8E-6	5.096910013008055	 	    .30	[NR] mg/dl increase in uric acid levels	Affymetrix[361,034]	N
11/25/2008	18762592	van den Oord EJ	09/01/2008	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18762592?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association analysis followed by a replication study implicates a novel candidate gene for neuroticism.	Neuroticism	1,227 European ancestry individuals	1,880 European ancestry individuals	14q21.3	14	46934481	MAMDC1	MDGA2			161357			rs12883384-?	rs12883384	0	12883384	intron	0	NR	7E-7	6.154901959985743	 	NR	NR	Affymetrix[420,287]	N
11/25/2008	18762592	van den Oord EJ	09/01/2008	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18762592?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association analysis followed by a replication study implicates a novel candidate gene for neuroticism.	Neuroticism	1,227 European ancestry individuals	1,880 European ancestry individuals	7p21.3	7	8678450	NXPH1	NXPH1			30010			rs2349775-?	rs2349775	0	2349775	intron	0	NR	7E-6	5.154901959985742	 	NR	NR	Affymetrix[420,287]	N
11/25/2008	18762592	van den Oord EJ	09/01/2008	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18762592?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association analysis followed by a replication study implicates a novel candidate gene for neuroticism.	Neuroticism	1,227 European ancestry individuals	1,880 European ancestry individuals	8q24.23	8	137906702	AK127771	FLJ45872			401478			rs2705293-?	rs2705293	0	2705293	intron	0	NR	6E-6	5.221848749616356	 	NR	NR	Affymetrix[420,287]	N
11/25/2008	18758461	Di Bernardo MC	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758461?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	6p25.3	6	411064	IRF4	IRF4			3662			rs872071-G	rs872071	0	872071	ncRNA	0	0.54	2E-20	19.69897000433602	 	   1.54	[1.41- 1.69] 	Illumina[345,665]	N
11/25/2008	18758461	Di Bernardo MC	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758461?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	15q23	15	69726651	Intergenic	RPLP1 - GEMIN8P1	6176	100128431		      271.11	       76.46	rs7176508-A	rs7176508	0	7176508	Intergenic	1	0.37	5E-12	11.30102999566398	 	   1.37	[1.26-1.50] 	Illumina[345,665]	N
11/25/2008	18758461	Di Bernardo MC	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758461?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	2q37.1	2	230226508	SP140, SP110	SP110;SP140			3431;11262			rs13397985-G	rs13397985	0	13397985	nearGene-5;intron	0	0.19	6E-10	9.221848749616356	 	   1.41	[1.26-1.57] 	Illumina[345,665]	N
11/25/2008	18758461	Di Bernardo MC	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758461?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	11q24.1	11	123490689	GRAMD1B	GRAMD1B			57476			rs735665-A	rs735665	0	735665	intron	0	0.21	4E-12	11.39794000867204	 	   1.45	[1.31-1.61] 	Illumina[345,665]	N
11/25/2008	18758461	Di Bernardo MC	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758461?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	2q13	2	111039881	ACOXL,BCL2L11	ACOXL			55289			rs17483466-G	rs17483466	0	17483466	intron	0	0.20	2E-10	9.698970004336017	 	   1.39	[1.25-1.53] 	Illumina[345,665]	N
11/25/2008	18758461	Di Bernardo MC	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758461?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	19q13.32	19	46704397	PRKD2,STRN4	PRKD2			25865			rs11083846-A	rs11083846	0	11083846	intron	0	0.22	4E-9	8.397940008672036	 	   1.35	[1.22-1.49] 	Illumina[345,665]	N
11/25/2008	18758464	Kugathasan S	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758464?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	20q13.33	20	63712604	TNFRSF6B	ZGPAT			84619			rs2315008-G	rs2315008	0	2315008	intron	0	0.69	9E-15	14.04575749056067	 	   1.36	[1.05-1.76] 	Illumina[NR]	N
11/25/2008	18758464	Kugathasan S	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758464?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	21q22.2	21	39093608	PSMG1	RPSAP64 - RPL23AP12	100873797	391282		      198.41	       33.95	rs2836878-?	rs2836878	0	2836878	Intergenic	1	0.72	4E-12	11.39794000867204	 	   1.41	[1.08-1.84] 	Illumina[NR]	N
11/25/2008	18758464	Kugathasan S	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758464?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-?	rs11209026	0	11209026	missense	0	0.94	7E-11	10.15490195998574	 	   2.56	[1.92-3.45] 	Illumina[NR]	N
11/25/2008	18758464	Kugathasan S	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758464?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	16q12.1	16	50722863	NOD2	NOD2			64127			rs5743289-T	rs5743289	0	5743289	intron	0	0.17	4E-10	9.397940008672037	 	   1.46	[1.29-1.64] 	Illumina[NR]	N
11/25/2008	18758464	Kugathasan S	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758464?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	6p21.32	6	32601914	HLA-DQA1	TRNAI25			100189401			rs477515-?	rs477515	0	477515		0	0.69	1E-8	8	 	   1.38	[1.23-1.54] 	Illumina[NR]	N
11/25/2008	18758464	Kugathasan S	08/31/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18758464?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	9q32	9	114806486	TNFSF15	TNFSF15			9966			rs6478109-?	rs6478109	0	6478109	nearGene-5	0	0.69	3E-8	7.522878745280337	 	   1.36	[1.22-1.52] 	Illumina[NR]	N
11/25/2008	18729187	Galvan A	08/26/2008	Int J Cancer	http://www.ncbi.nlm.nih.gov/pubmed/18729187?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A polygenic model with common variants may predict lung adenocarcinoma risk in humans.	Lung adenocarcinoma	482 European ancestry cases, 522 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina[~318,000](pooled)	N
11/25/2008	18846228	Weidinger S	08/22/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846228?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan on total serum IgE levels identifies FCER1A as novel susceptibility locus.	IgE levels 	1,530 European ancesrty individuals	9,769 European ancestry individuals	1q23.2	1	159302270	FCER1A	FCER1A			2205			rs2251746-C	rs2251746	0	2251746	intron	0	0.26	2E-20	19.69897000433602	 	  19.20	[NR] % decrease	Affymetrix[353,569]	N
11/25/2008	18846228	Weidinger S	08/22/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18846228?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genome-wide scan on total serum IgE levels identifies FCER1A as novel susceptibility locus.	IgE levels 	1,530 European ancesrty individuals	9,769 European ancestry individuals	5q31.1	5	132637485	RAD50	RAD50			10111			rs2040704-?	rs2040704	0	2040704	intron	0	0.23	4E-8	7.397940008672037	 	  13.90	[NR] % increase	Affymetrix[353,569]	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	10q21.2	10	60420054	ANK3	ANK3			288			rs10994336-T	rs10994336	0	10994336	intron	0	0.05	9E-9	8.045757490560675	 	   1.45	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	15q14	15	38703290	C15orf53, RASGRP1	C15orf53 - C15orf54	400359	400360		        3.25	      547.39	rs12899449-?	rs12899449	0	12899449	Intergenic	1	0.72	4E-7	6.397940008672037	 	   1.20	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	2q11.2	2	96747751	Intergenic	LMAN2L - CNNM4	81562	26504		        7.68	       13.15	rs2314398-?	rs2314398	0	2314398	Intergenic	1	0.69	3E-6	5.522878745280337	 	   1.17	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	9q33.3	9	127345685	NR	GARNL3			84253			rs4130590-?	rs4130590	0	4130590	intron	0	0.56	3E-6	5.522878745280337	 	   1.16	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	11q14.1	11	79372576	NR	TENM4			26011			rs12290811-A	rs12290811	0	12290811	intron	0	0.15	4E-6	5.397940008672037	 	   1.20	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	6q25.2	6	152417619	NR	SYNE1			23345			rs17082664-G	rs17082664	0	17082664	intron	0	0.13	4E-6	5.397940008672037	 	   1.22	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	15q14	15	38219782	NR	TMCO5A - SPRED1	145942	161742		      268.36	       32.94	rs16966460-G	rs16966460	0	16966460	Intergenic	1	0.10	4E-6	5.397940008672037	 	   1.26	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p22.3	3	32288005	NR	CMTM8			152189			rs4380451-?	rs4380451	0	4380451	intron	0	0.73	4E-6	5.397940008672037	 	   1.18	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	9p13.3	9	33799372	NR	PRSS3;UBE2R2-AS1			5646;101929665			rs216345-T	rs216345	0	216345	intron;intron	0	0.37	4E-6	5.397940008672037	 	   1.15	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p24.3	3	21664877	NR	ZNF385D			79750			rs3821396-A	rs3821396	0	3821396	intron	0	0.11	5E-6	5.301029995663981	 	   1.23	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	14q13.1	14	33011716	NR	NPAS3			64067			rs8015959-T	rs8015959	0	8015959	intron	0	0.02	5E-6	5.301029995663981	 	   1.59	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	14q11.2	14	23912306	NR	LOC102724845			102724845			rs12436436-C	rs12436436	0	12436436	intron	0	0.08	5E-6	5.301029995663981	 	   1.30	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p24.3	3	21207150	NR	RNY4P22 - VENTXP7	100873800	391518		     1014.28	      198.58	rs11720452-?	rs11720452	0	11720452	Intergenic	1	0.58	5E-6	5.301029995663981	 	   1.15	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	1p21.2	1	101472921	NR	PPIAP7 - RPSAP19	5489	730029		      201.43	      313.35	rs1948368-?	rs1948368	0	1948368	Intergenic	1	0.51	6E-6	5.221848749616356	 	   1.15	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	9q31.3	9	110434983	NR	SVEP1			79987			rs7042161-?	rs7042161	0	7042161	intron	0	0.65	6E-6	5.221848749616356	 	   1.15	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	11q24.2	11	124668099	NR	SIAE			54414			rs544368-T	rs544368	0	544368	intron	0	0.12	6E-6	5.221848749616356	 	   1.22	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	15q25.1	15	80402580	NR	ARNT2;LOC101929560			9915;101929560			rs2278702-?	rs2278702	0	2278702	nearGene-5;intron	0	0.83	6E-6	5.221848749616356	 	   1.21	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	18p11.32	18	278796	NR	THOC1 - COLEC12	9984	81035		       10.74	       40.56	rs7226677-G	rs7226677	0	7226677	Intergenic	1	0.12	7E-6	5.154901959985742	 	   1.24	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p26.2	3	3617156	NR	CRBN - SUMF1	51185	285362		      437.44	      165.35	rs1601875-?	rs1601875	0	1601875	Intergenic	1	0.50	7E-6	5.154901959985742	 	   1.14	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	10q22.3	10	79195310	NR	ZMIZ1			57178			rs703965-?	rs703965	0	703965	intron	0	0.54	8E-6	5.096910013008055	 	   1.15	[NR] 	Affymetrix[1,769,948]imputed	N
11/25/2008	18711365	Ferreira MA	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711365?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	12p13.33	12	2236129	CACNA1C	CACNA1C			775			rs1006737-A	rs1006737	0	1006737	intron	0	0.32	7E-8	7.154901959985742		   1.18	[NR] 	Affymetrix[1,769,948]imputed	N
04/10/2009	18711366	Unoki H	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711366?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	SNPs in KCNQ1 are associated with susceptibility to type 2 diabetes in East Asian and European populations.	Type 2 diabetes	194 Japanese ancestry cases, 1,558 Japanese ancestry controls	5,324 East Asian ancestry cases, 7,037 East Asian ancestry controls, 4,085 European ancestry cases, 5,302 European ancestry controls	6p22.3	6	20657634	CDKAL1	CDKAL1			54901			rs4712524-G	rs4712524	0	4712524	intron	0	0.42	3E-10	9.522878745280336		   1.22	[1.15-1.31] 	Affymetrix [207,097]	N
04/10/2009	18711366	Unoki H	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711366?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	SNPs in KCNQ1 are associated with susceptibility to type 2 diabetes in East Asian and European populations.	Type 2 diabetes	194 Japanese ancestry cases, 1,558 Japanese ancestry controls	5,324 East Asian ancestry cases, 7,037 East Asian ancestry controls, 4,085 European ancestry cases, 5,302 European ancestry controls	3q27.2	3	185812502	IGF2BP2	IGF2BP2			10644			rs6769511-C	rs6769511	0	6769511	intron	0	0.32	1E-9	8.999999999999998		   1.23	[1.15-1.31] 	Affymetrix [207,097]	N
04/10/2009	18711366	Unoki H	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711366?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	SNPs in KCNQ1 are associated with susceptibility to type 2 diabetes in East Asian and European populations.	Type 2 diabetes	194 Japanese ancestry cases, 1,558 Japanese ancestry controls	5,324 East Asian ancestry cases, 7,037 East Asian ancestry controls, 4,085 European ancestry cases, 5,302 European ancestry controls	11p15.4	11	2837316	KCNQ1	KCNQ1			3784			rs2237897-C	rs2237897	0	2237897	intron	0	0.34	1E-16	16		   1.33	[1.24-1.41] 	Affymetrix [207,097]	N
04/03/2009	18711367	Yasuda K	08/17/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18711367?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Variants in KCNQ1 are associated with susceptibility to type 2 diabetes mellitus.	Type 2 diabetes	187 Japanese cases, 1,504 Japanese controls	6,552 Asian cases, 6,621 Asian controls, 2,830 cases, 3,740 controls (Swedish)	11p15.4	11	2818521	KCNQ1	KCNQ1			3784			rs2237892-C	rs2237892	0	2237892	intron	0	0.61	2E-42	41.69897000433601		   1.40	[1.34-1.47] 	Invader [82,343]	N
11/25/2008	18685109	Shlien A	08/12/2008	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/18685109?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Excessive genomic DNA copy number variation in the Li-Fraumeni cancer predisposition syndrome.	TP53 carriage	53 carriers,70 controls	770 individuals	Pending			Pending	 - 						Pending	Pending					Pending	Pending		Pending	Pending	Pending	Affymetrix[3,884 CNVs]	Y
11/25/2008	19165924	Hofmann S	08/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165924	Genome-wide association study identifies ANXA11 as a new susceptibility locus for sarcoidosis.	Sarcoidosis	499 European ancestry cases, 490 European ancestry controls	1,649 cases, 1,832 controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[375,771]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	6q23.3	6	137874586	TNFAIP3	TNFAIP3			7128			rs5029939-?	rs5029939	0	5029939	intron	0	0.03	3E-12	11.52287874528034		   2.28	[NR] 	Affymetrix[313,238]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	10q11.23	10	48728291	c10orf64	WDFY4			57705			rs11101442-?	rs11101442	0	11101442	intron	0	0.32	3E-6	5.522878745280337	 	NR	NR	Affymetrix[313,238]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	2p16.3	2	49728359	Intergenic	MIR548BA - RPL7P13	102465854	130728		      668.70	      150.25	rs17039212-?	rs17039212	0	17039212	Intergenic	1	0.10	9E-6	5.045757490560675	 	NR	NR	Affymetrix[313,238]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	4q28.3	4	137771096	Intergenic	PCDH18 - LINC00616	54510	641365		      238.62	      256.33	rs2313132-?	rs2313132	0	2313132	Intergenic	1	0.12	8E-6	5.096910013008055	 	NR	NR	Affymetrix[313,238]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	17p12	17	13830489	Intergenic	MIR548H3 - CDRT15P1	100302287	94158		      286.84	      194.01	rs12949531-?	rs12949531	0	12949531	Intergenic	1	0.22	8E-6	5.096910013008055	 	NR	NR	Affymetrix[313,238]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	2q32.3	2	191038032	STAT4	STAT4			6775			rs3821236-?	rs3821236	0	3821236	intron	0	0.19	8E-11	10.09691001300805	 	   1.49	[NR] 	Affymetrix[313,238]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	8p23.1	8	11495032	BLK	BLK			640			rs2618476-?	rs2618476	0	2618476	intron	0	0.26	2E-8	7.698970004336018	 	   1.29	[NR] 	Affymetrix[313,238]	N
11/25/2008	19165918	Graham RR	08/01/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/19165918	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 Other ancestry trios	16p11.2	16	31322915	ITGAM	ITGAM			3684			rs11150610-?	rs11150610	0	11150610	intron	0	0.42	2E-6	5.698970004336018	 	NR	NR	Affymetrix[313,238]	N
11/25/2008	18668548	Julia A	08/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18668548?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	18q23	18	78649597	SALL3	LINC01029 - SALL3	101927715	27164		      655.87	      330.68	rs2002842-A	rs2002842	0	2002842	Intergenic	1	0.49	6E-6	5.221848749616356	 	   1.61	[NR] 	Illumina[299,918]	N
11/25/2008	18668548	Julia A	08/01/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18668548?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	6p21.32	6	32696074	HLA-DQA1, HLA-DQA2	TRNAI25			100189401			rs6457617-?	rs6457617	0	6457617		0	NR	1E-9	8.999999999999998	 	NR	NR	Illumina[299,918]	N
11/25/2008	18677311	O'Donovan MC	07/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18677311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of loci associated with schizophrenia by genome-wide association and follow-up.	Schizophrenia	479 European ancestry cases, 2,937 European ancestry controls	4,143 European ancestry cases, 6,515 European ancestry controls, 1,782 East Asian ancestry cases, 1,865 East Asian ancestry controls, 741 Other ancestry cases, 1,517 Other ancestry controls	2q32.1	2	184913701	ZNF804A	ZNF804A			91752			rs1344706-T	rs1344706	0	1344706	intron	0	0.59	2E-7	6.698970004336019	 	   1.12	[NR] 	Affymetrix[362,532]	N
11/25/2008	18677311	O'Donovan MC	07/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18677311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of loci associated with schizophrenia by genome-wide association and follow-up.	Schizophrenia	479 European ancestry cases, 2,937 European ancestry controls	4,143 European ancestry cases, 6,515 European ancestry controls, 1,782 East Asian ancestry cases, 1,865 East Asian ancestry controls, 741 Other ancestry cases, 1,517 Other ancestry controls	11p14.1	11	29140589	Intergenic	OR2BH1P - HNRNPRP2	403238	100421354		      153.09	      528.30	rs1602565-C	rs1602565	0	1602565	Intergenic	1	0.11	3E-6	5.522878745280337	 	   1.16	[NR] 	Affymetrix[362,532]	N
11/25/2008	18677311	O'Donovan MC	07/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18677311?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of loci associated with schizophrenia by genome-wide association and follow-up.	Schizophrenia	479 European ancestry cases, 2,937 European ancestry controls	4,143 European ancestry cases, 6,515 European ancestry controls, 1,782 East Asian ancestry cases, 1,865 East Asian ancestry controls, 741 Other ancestry cases, 1,517 Other ancestry controls	16p13.12	16	12967754	Intergenic	SHISA9			729993			rs7192086-T	rs7192086	0	7192086	intron	0	0.24	6E-6	5.221848749616356	 	   1.12	[NR] 	Affymetrix[362,532]	N
11/25/2008	18660810	Schormair B	07/27/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18660810?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	PTPRD (protein tyrosine phosphatase receptor type delta) is associated with restless legs syndrome.	Restless legs syndrome	628 European ancestry cases, 1,644 European ancestry controls	1,550 European ancestry cases, 2,269 European ancestry controls, 285 French Canadian founder cases, 842 French Canadian founder controls	9p24.1	9	8846955	PTPRD	PTPRD			5789			rs1975197-T	rs1975197	0	1975197	intron	0	0.16	6E-9	8.221848749616356	 	   1.31	[1.20-1.44] 	Affymetrix[208,733]	N
11/25/2008	18660810	Schormair B	07/27/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18660810?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	PTPRD (protein tyrosine phosphatase receptor type delta) is associated with restless legs syndrome.	Restless legs syndrome	628 European ancestry cases, 1,644 European ancestry controls	1,550 European ancestry cases, 2,269 European ancestry controls, 285 French Canadian founder cases, 842 French Canadian founder controls	9p23	9	9261737	PTPRD	PTPRD			5789			rs4626664-A	rs4626664	0	4626664	intron	0	0.12	6E-10	9.221848749616356	 	   1.44	[1.31-1.59] 	Affymetrix[208,733]	N
11/25/2008	18650507	Link E	07/23/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18650507?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	SLCO1B1 variants and statin-induced myopathy--a genomewide study.	Response to statin therapy	85 European ancestry cases, 90 European ancestry controls	21 European ancestry cases, 16,643 European ancestry controls	12p12.1	12	21178615	SLCO1B1	SLCO1B1			10599			rs4149056-C	rs4149056	0	4149056	missense	0	0.13	2E-9	8.698970004336019	 	   4.50	[2.60-7.70] 	Illumina[316,184]	N
11/25/2008	18723019	Franke A	07/21/2008	Gastroenterology	http://www.ncbi.nlm.nih.gov/pubmed/18723019?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis in sarcoidosis and Crohn's disease unravels a common susceptibility locus on 10p12.2.	Crohn's disease and sarcoidosis (combined)	382 European ancestry Crohn's disease cases, 398 European ancestry Sarcoidosis cases, 394 European ancestry controls	660 European ancestry Crohn's disease cases, 657 European ancestry Sarcoidosis cases, 1,091 European ancestry controls	10p12.2	10	23376509	C10orf67	C10orf67 - MIR1254-2	256815	100616217		       31.67	       16.90	rs1398024-A	rs1398024	0	1398024	Intergenic	1	0.25	4E-6	5.397940008672037		   1.23	[1.04-1.45] 	Affymetrix[83,360]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	20q12	20	40192165	MAFB	HSPE1P1 - MAFB	140895	9935		      258.93	      493.68	rs6028945-T	rs6028945	0	6028945	Intergenic	1	0.12	2E-7	6.698970004336019	 	NR	NR	Illumina[283,348]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	6q26	6	163765645	QKI	QKI - C6orf118	9444	168090		      187.05	     1498.95	rs10945919-G	rs10945919	0	10945919	Intergenic	1	0.32	3E-7	6.522878745280337	 	NR	NR	Illumina[283,348]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	9p21.2	9	27490969	IFNK	MOB3B			79817			rs7046653-A	rs7046653	0	7046653	intron	0	0.26	5E-7	6.30102999566398	 	NR	NR	Illumina[283,348]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	2q24.3	2	168532581	LASS6	CERS6			253782			rs13393173-A	rs13393173	0	13393173	intron	0	0.12	4E-6	5.397940008672037	 	NR	NR	Illumina[283,348]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	20p11.21	20	23866372	CST5	CST2 - CST5	1470	1473		       39.70	        9.56	rs6138150-T	rs6138150	0	6138150	Intergenic	1	0.84	3E-6	5.522878745280337	 	NR	NR	Illumina[283,348]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	1p22.3	1	87666697	LMO4	LMO4 - RPL36AP10	8543	100271140		      317.77	      911.15	rs983332-A	rs983332	0	983332	Intergenic	1	0.21	5E-6	5.301029995663981	 	NR	NR	Illumina[283,348]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	4p15.1	4	35370476	CENTD1	RPL31P31 - SEC63P2	727792	100420287		     1401.91	      117.34	rs437943-G	rs437943	0	437943	Intergenic	1	0.33	4E-6	5.397940008672037	 	NR	NR	Illumina[283,348]	N
11/25/2008	18615156	Liu C	07/10/2008	Mol Med	http://www.ncbi.nlm.nih.gov/pubmed/18615156?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	7q21.3	7	95301079	PON1	PON1			5444			rs854555-A	rs854555	0	854555	intron	0	0.34	2E-6	5.698970004336018	 	NR	NR	Illumina[283,348]	N
11/25/2008	18604267	Pare G	07/04/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18604267?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry women	2,008 European ancestry women	9q34.2	9	133273983	ABO	ABO			28			rs507666-G	rs507666	0	507666	intron	0	0.20	5E-29	28.30102999566398	 	  17.73	[NR] umol/L decrease	Illumina[336,108]	N
11/25/2008	18604267	Pare G	07/04/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18604267?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry women	2,008 European ancestry women	19p13.2	19	10284116	ICAM1	ICAM1			3383			rs1799969-A	rs1799969	0	1799969	missense	0	0.12	4E-47	46.39794000867204		  28.19	[NR] umol/L decrease	Illumina[336,108]	N
11/25/2008	18604267	Pare G	07/04/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18604267?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry women	2,008 European ancestry women	19p13.2	19	10285007	ICAM1	ICAM1;ICAM4			3383;3386			rs5498-A	rs5498	0	5498	missense;nearGene-5	0	0.43	5E-25	24.30102999566398	 	  13.22	[NR] umol/L increase	Illumina[336,108]	N
11/25/2008	18604267	Pare G	07/04/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18604267?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry women	2,008 European ancestry women	19p13.2	19	10286562	ICAM1	ICAM1;ICAM4			3383;3386			rs281437-?	rs281437	0	281437	UTR-3;nearGene-5	0	0.30	3E-10	9.522878745280336	 	  10.10	[NR] umol/L increase	Illumina[336,108]	N
11/25/2008	18601904	Bae JS	07/02/2008	Biochem Biophys Res Commun	http://www.ncbi.nlm.nih.gov/pubmed/18601904?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of SNP markers for common CNV regions and association analysis of risk of subarachnoid aneurysmal hemorrhage in Japanese population.	Subarachnoid aneurysmal hemorrhage	203 Japanese ancestry cases, 294 Japanese ancestry controls	NA	Pending			Pending	 - 						Pending	Pending					Pending	Pending		Pending	Pending	Pending	Illumina[317,503]	Y
11/25/2008	18594024	Sarasquete ME	07/01/2008	Blood	http://www.ncbi.nlm.nih.gov/pubmed/18594024?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Bisphosphonate-related osteonecrosis of the jaw is associated with polymorphisms of the cytochrome P450 CYP2C8 in multiple myeloma: a genome-wide single nucleotide polymorphism analysis.	Osteonecrosis of the jaw	22 European ancestry cases, 65 European ancestry controls	NA	10q23.33	10	95038791	CYP2C8	CYP2C8			1558			rs1934951-T	rs1934951	0	1934951	intron	0	0.12	1E-6	5.999999999999999	 	  12.75	[3.7-43.5] 	Affymetrix[339,972]	N
11/25/2008	18591461	Turner ST	06/30/2008	Hypertension	http://www.ncbi.nlm.nih.gov/pubmed/18591461	Genomic association analysis suggests chromosome 12 locus influencing antihypertensive response to thiazide diuretic.	Response to diuretic therapy	97 African American good response individuals, 97 African American poor response individuals, 98 European ancestry good response individuals, 97 European ancestry poor response individuals	NA	12q15[rs317689]; 12q15[rs315135]			LYZ, YEATS4, FRS2	 - 						3-SNP haplotype	rs317689,rs315135,rs7297610					NR	3E-7		(blacks)	NR	NR	Affymetrix[up to 102,334]	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	13q14.11	13	43883789	Unknown	LACC1			144811			rs3764147-G	rs3764147	0	3764147	missense	0	0.22	2E-13	12.69897000433602	 	   1.25	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5q33.3	5	159387525	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		       69.36	      529.21	rs10045431-C	rs10045431	0	10045431	Intergenic	1	0.71	4E-13	12.39794000867204	 	   1.11	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	6q27	6	167024500	CCR6	FGFR1OP			11116			rs2301436-T	rs2301436	0	2301436	intron	0	0.46	1E-12	12	 	   1.21	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	17q21.2	17	42362183	STAT3	STAT3			6774			rs744166-A	rs744166	0	744166	intron	0	0.57	7E-12	11.15490195998574	 	   1.18	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	6q21	6	105987394	Unknown	RPL35P3 - PRDM1	728010	639		      684.54	       98.93	rs7746082-C	rs7746082	0	7746082	Intergenic	1	0.29	2E-10	9.698970004336017	 	   1.17	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-G	rs2476601	0	2476601	missense;intron	0	0.90	1E-8	8	 	   1.31	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1q23.3	1	160882256	ITLN1	ITLN1			55600			rs2274910-C	rs2274910	0	2274910	intron	0	0.68	1E-9	8.999999999999998		   1.14	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1q24.3	1	172893094	Intergenic	AIMP1P2 - TNFSF18	100873064	8995		        6.84	      148.13	rs9286879-G	rs9286879	0	9286879	Intergenic	1	0.24	2E-9	8.698970004336019	 	   1.19	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1q32.1	1	200966738	Intergenic	MROH3P			647215			rs11584383-T	rs11584383	0	11584383	nearGene-3	0	0.70	1E-11	11	 	   1.18	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	6p22.3	6	20728500	CDKAL1	CDKAL1			54901			rs6908425-C	rs6908425	0	6908425	intron	0	0.78	9E-10	9.045757490560675	 	   1.21	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	7p12.2	7	50230076	Intergenic	C7orf72 - IKZF1	100130988	10320		       70.82	       74.71	rs1456893-A	rs1456893	0	1456893	Intergenic	1	0.68	5E-9	8.301029995663981	 	   1.20	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	8q24.13	8	125527809	Intergenic	TRIB1 - LINC00861	10221	100130231		       89.40	      394.71	rs1551398-A	rs1551398	0	1551398	Intergenic	1	0.62	5E-9	8.301029995663981	 	   1.08	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	9p24.1	9	4981602	JAK2	HNRNPA1P41 - JAK2	100128701	3717		       35.64	        3.64	rs10758669-C	rs10758669	0	10758669	Intergenic	1	0.35	3E-9	8.522878745280337	 	   1.12	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	10p11.21	10	34998722	Intergenic	PRDX2P2 - CUL2	646218	8453		       32.47	        9.83	rs17582416-G	rs17582416	0	17582416	Intergenic	1	0.35	2E-9	8.698970004336019	 	   1.16	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	11q13.5	11	76590272	C11orf30	C11orf30 - LRRC32	56946	2615		       37.38	       67.25	rs7927894-T	rs7927894	0	7927894	Intergenic	1	0.39	1E-9	8.999999999999998	 	   1.16	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	12q12	12	40208138	LRRK2, MUC19	RPL30P13 - LRRK2	100271305	120892		      139.48	       16.87	rs11175593-T	rs11175593	0	11175593	Intergenic	1	0.02	3E-10	9.522878745280336	 	   1.54	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	17q12	17	39884510	ORMDL3	ZPBP2 - GSDMB	124626	55876		        6.61	       20.09	rs2872507-A	rs2872507	0	2872507	Intergenic	1	0.47	5E-9	8.301029995663981	 	   1.12	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	21q21.1	21	15432901	Intergenic	NRIP1 - CYCSP42	8204	343727		      367.97	       57.62	rs1736135-T	rs1736135	0	1736135	Intergenic	1	0.57	7E-9	8.154901959985743	 	   1.18	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	21q22.3	21	44195678	ICOSLG	C21orf33			8209			rs762421-G	rs762421	0	762421	intron	0	0.39	1E-9	8.999999999999998	 	   1.13	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1p31.3	1	67236843	IL23R	IL23R			149233			rs11465804-T	rs11465804	0	11465804	intron	0	0.93	7E-63	62.15490195998573	 	   2.50	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	2q37.1	2	233271764	ATG16L1	ATG16L1			55054			rs3828309-G	rs3828309	0	3828309	intron	0	0.53	2E-32	31.69897000433602	 	   1.25	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	3p21.31	3	49684099	MST1	MST1			4485			rs3197999-A	rs3197999	0	3197999	missense	0	0.27	1E-12	12	 	   1.20	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5p13.1	5	40392626	PTGER4	LINC00603 - PTGER4	102467077	5734		      339.30	      287.30	rs4613763-C	rs4613763	0	4613763	Intergenic	1	0.13	7E-27	26.15490195998574	 	   1.32	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5q31.1	5	132435113	Intergenic	C5orf56			441108			rs2188962-T	rs2188962	0	2188962	intron	0	0.43	2E-18	17.69897000433602	 	   1.25	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	5q33.1	5	150879305	IRGM	IRGM - ZNF300	345611	91975		       30.64	       15.08	rs11747270-G	rs11747270	0	11747270	Intergenic	1	0.09	3E-16	15.52287874528034	 	   1.33	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	9q32	9	114804160	TNFSF15	TNFSF15			9966			rs4263839-G	rs4263839	0	4263839	intron	0	0.68	3E-10	9.522878745280336	 	   1.22	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	10q24.2	10	99531836	NKX2-3	NKX2-3;LOC101927324			159296;101927324			rs11190140-T	rs11190140	0	11190140	nearGene-5;nearGene-5	0	0.48	3E-16	15.52287874528034	 	   1.20	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	16q12.1	16	50729867	NOD2	NOD2			64127			rs2066847-C	rs2066847	0	2066847	frameshift	0	0.02	3E-24	23.52287874528033	 	   3.99	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	18p11.21	18	12779948	PTPN2	CEP76 - PTPN2	79959	5771		       77.17	        5.53	rs2542151-G	rs2542151	0	2542151	Intergenic	1	0.15	5E-17	16.30102999566398	 	   1.35	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18587394	Barrett JC	06/29/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18587394?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	10q21.2	10	62678726	ZNF365	ZNF365 - ALDH7A1P4	22891	544		        6.72	       62.26	rs10995271-C	rs10995271	0	10995271	Intergenic	1	0.39	4E-20	19.39794000867203	 	   1.25	[NR] 	Affymetrix and Illumina[635,547](imputed)	N
11/25/2008	18576341	Behrens EM	06/24/2008	Arthritis Rheum	http://www.ncbi.nlm.nih.gov/pubmed/18576341?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis.	Arthritis (juvenile idiopathic)	67 European ancestry cases, 1,952 European ancestry controls, 63 cases	NA	6p21.32	6	32353777	HLA-DRB1	C6orf10			10665			rs2395148-?	rs2395148	0	2395148	intron	0	NR	2E-10	9.698970004336017	 	   5.37	[3.02-9.56] 	Illumina[524,684]	N
11/25/2008	18451265	Bouatia-Naji N	06/19/2008	Science	http://www.ncbi.nlm.nih.gov/pubmed/18451265?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A polymorphism within the G6PC2 gene is associated with fasting plasma glucose levels.	Fasting plasma glucose	654 European ancestry individuals	9,353 European ancestry individuals	2q31.1	2	168906638	G6PC2	G6PC2			57818			rs560887-A	rs560887	0	560887	intron	0	0.30	4E-23	22.39794000867203	 	    .06	[0.05-0.08] mmol/l decrease	Illumina[392,935]	N
11/25/2008	18535201	Cooper GM	06/05/2008	Blood	http://www.ncbi.nlm.nih.gov/pubmed/18535201?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.	Warfarin maintenance dose	181 European ancestry individuals	374 European ancestry individuals	12p13.33	12	2620466	CACNA1C	CACNA1C			775			rs216013-?	rs216013	0	216013	intron	0	NR	9E-7	6.045757490560675	 	NR	NR	Illumina[538,629]	N
11/25/2008	18535201	Cooper GM	06/05/2008	Blood	http://www.ncbi.nlm.nih.gov/pubmed/18535201?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.	Warfarin maintenance dose	181 European ancestry individuals	374 European ancestry individuals	16p11.2	16	31036758	VKORC1	STX4			6810			rs10871454-?	rs10871454	0	10871454	intron	0	NR	5E-34	33.30102999566398	 	NR	NR	Illumina[538,629]	N
11/25/2008	18535201	Cooper GM	06/05/2008	Blood	http://www.ncbi.nlm.nih.gov/pubmed/18535201?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.	Warfarin maintenance dose	181 European ancestry individuals	374 European ancestry individuals	10q23.33	10	94947445	CYP2C9	CYP2C9			1559			rs4086116-?	rs4086116	0	4086116	intron	0	NR	6E-12	11.22184874961635	 	NR	NR	Illumina[538,629]	N
11/25/2008	18521185	Chen WM	06/04/2008	J Clin Invest	http://www.ncbi.nlm.nih.gov/pubmed/18521185?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Variations in the G6PC2/ABCB11 genomic region are associated with fasting glucose levels.	Fasting plasma glucose	5,088 European ancestry individuals	18,436 European ancestry individuals	2q31.1	2	168917561	G6PC2,ABCB11	G6PC2 - ABCB11	57818	8647		        7.56	        5.27	rs563694-C	rs563694	0	563694	Intergenic	1	0.34	4E-7	6.397940008672037	 	NR	NR	Illumina[315,635]	N
11/25/2008	18519826	Uhl GR	06/04/2008	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18519826?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Molecular genetics of successful smoking cessation: convergent genome-wide association study results.	Smoking cessation	241 European ancestry successful abstainers, 309 European ancestry unsuccessful abstainers	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[~500,000] (pooled)	N
11/25/2008	18521090	Lavedan C	06/03/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18521090?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of the NPAS3 gene and five other loci with response to the antipsychotic iloperidone identified in a whole genome association study.	Response to iloperidone treatment (PANSS-T score)	106 Asian, African American, European, or other ancestry individuals	104 Asian, African American, European, or other ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[334,563]	N
11/25/2008	18521091	Volpi S	06/03/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18521091?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian unspecified Schizophrenia cases, 7 Other ancestry Schizophrenia cases	NA	14q12	14	31624342	NUBPL	NUBPL			80224			rs7142881-A	rs7142881	0	7142881	intron	0	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[339,272]	N
11/25/2008	18521091	Volpi S	06/03/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18521091?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian unspecified Schizophrenia cases, 7 Other ancestry Schizophrenia cases	NA	2q31.3	2	181591267	CERKL	CERKL			375298			rs993648-T	rs993648	0	993648	intron	0	NR	3E-6	5.522878745280337	 	NR	NR	Affymetrix[339,272]	N
11/25/2008	18521091	Volpi S	06/03/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18521091?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian unspecified Schizophrenia cases, 7 Other ancestry Schizophrenia cases	NA	15q26.1	15	91902643	SLCO3A1	SLCO3A1			28232			rs3924426-T	rs3924426	0	3924426	intron	0	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[339,272]	N
11/25/2008	18521091	Volpi S	06/03/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18521091?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian unspecified Schizophrenia cases, 7 Other ancestry Schizophrenia cases	NA	18q12.2	18	37348676	BRUNOL4	CELF4			56853			rs4799915-T	rs4799915	0	4799915	intron	0	NR	3E-6	5.522878745280337	 	NR	NR	Affymetrix[339,272]	N
11/25/2008	18521091	Volpi S	06/03/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18521091?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian unspecified Schizophrenia cases, 7 Other ancestry Schizophrenia cases	NA	10q23.1	10	82059369	NRG3	NRG3			10718			rs4933824-T	rs4933824	0	4933824	intron	0	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[339,272]	N
11/25/2008	18521091	Volpi S	06/03/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18521091?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian unspecified Schizophrenia cases, 7 Other ancestry Schizophrenia cases	NA	4q32.3	4	168609107	PALLD	PALLD			23022			rs17054392-C	rs17054392	0	17054392	intron	0	NR	3E-6	5.522878745280337	 	NR	NR	Affymetrix[339,272]	N
05/02/2013	18514160	Arnaud-Lopez L	06/01/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18514160	Phosphodiesterase 8B gene variants are associated with serum TSH levels and thyroid function.	Thyroid stimulating hormone	4,300 Sardinian indivduals	1,164 European ancestry individuals, 1,136 Old Order Amish individuals, 1,858 Sardinian individuals	5q13.3	5	77222617	PDE8B	PDE8B			8622			rs4704397-A	rs4704397	0	4704397	intron	0	0.44	2E-20	19.69897000433602		    .25	[0.17-0.33] uIU/ml increase	Affymetrix [362,129]	N
11/25/2008	18488026	Brown KM	05/18/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18488026?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common sequence variants on 20q11.22 confer melanoma susceptibility.	Melanoma	864 European ancestry cases, 864 European ancestry controls	1,230 European ancestry cases, 1,251 European ancestry controls	20q11.22	20	34583968	CDC91L1	PIGU			128869			rs910873-T	rs910873	0	910873	intron	0	0.09	1E-15	15	 	   1.75	[1.53-2.01] 	Illumina[535,150](pooled)	N
11/25/2008	18488028	Sulem P	05/18/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18488028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two newly identified genetic determinants of pigmentation in Europeans.	Blond vs. brown hair color	5,130 European ancestry individuals	3,330 European ancestry individuals	11q13.3	11	69078931	TPCN2	TPCN2			219931			rs35264875-T	rs35264875	0	35264875	missense	0	0.22	4E-30	29.39794000867203	 	   2.49	[1.96-3.15] 	Illumina[316,515]	N
11/25/2008	18488028	Sulem P	05/18/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18488028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two newly identified genetic determinants of pigmentation in Europeans.	Blue vs. green eyes	5,130 individuals	3,330 individuals	9p23	9	12672097	TYRP1	JKAMPP1 - TYRP1	100049717	7306		      382.86	       21.29	rs1408799-C	rs1408799	0	1408799	Intergenic	1	0.75	6E-17	16.22184874961636	 	   1.40	[1.25-1.57] 	Illumina[316,515]	N
11/25/2008	18488028	Sulem P	05/18/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18488028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two newly identified genetic determinants of pigmentation in Europeans.	Burning and freckling	5,130 individuals	3,330 individuals	20q11.22[rs1015362]; 20q11.22[rs4911414]			ASIP	 - 						rs1015362-G + rs4911414-T	rs1015362, rs4911414					0.08	6E-37		 	   2.56	[2.06-3.18] 	Illumina[316,515]	N
11/25/2008	18488028	Sulem P	05/18/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18488028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two newly identified genetic determinants of pigmentation in Europeans.	Freckles	5,130 individuals	3,330 individuals	20q11.22[rs1015362]; 20q11.22[rs4911414]			ASIP	 - 						rs1015362-G + rs4911414-T	rs1015362, rs4911414					0.08	8E-29		 	   1.95	[1.65-2.32] 	Illumina[316,515]	N
11/25/2008	18488028	Sulem P	05/18/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18488028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two newly identified genetic determinants of pigmentation in Europeans.	Red vs. non-red hair color	5,130 individuals	3,330 individuals	20q11.22[rs1015362]; 20q11.22[rs4911414]			ASIP	 - 						rs1015362-G + rs4911414-T	rs1015362, rs4911414					0.08	3E-9		 	   1.76	[1.34-2.31] 	Illumina[316,515]	N
11/25/2008	18488028	Sulem P	05/18/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18488028?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two newly identified genetic determinants of pigmentation in Europeans.	Skin sensitivity to sun	5,130 individuals	3,330 individuals	20q11.22[rs1015362]; 20q11.22[rs4911414]			ASIP	 - 						rs1015362-G + rs4911414-T	rs1015362, rs4911414					0.08	2E-24		 	   1.76	[1.49-2.08] 	Illumina[316,515]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry women	8,465 European ancestry individuals	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-T	rs12203592	0	12203592	intron	0	NR	7E-127	126.1549019599857	 	    .35	[0.33-0.37] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry women	8,465 European ancestry individuals	5p13.2	5	33958854	MATP	SLC45A2			51151			rs28777-C	rs28777	0	28777	intron	0	NR	1E-17	17	 	    .46	[0.36-0.56] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry women	8,465 European ancestry individuals	6p25.3	6	542159	EXOC2	EXOC2			55770			rs6918152-A	rs6918152	0	6918152	intron	0	NR	6E-8	7.221848749616355	 	    .11	[0.07-0.15] increase in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry women	8,465 European ancestry individuals	15q13.1	15	28120472	HERC2	HERC2			8924			rs12913832-A	rs12913832	0	12913832	intron	0	NR	4E-103	102.397940008672	 	    .44	[0.40-0.48] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry women	8,465 European ancestry individuals	15q13.1	15	28760947	Intergenic	WHAMMP2 - PDCD6IPP2	440253	646278		        2.59	       28.89	rs8033165-T	rs8033165	0	8033165	Intergenic	1	NR	5E-11	10.30102999566398	 	    .12	[0.08-0.16] increase in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry women	8,465 European ancestry individuals	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-G	rs12896399	0	12896399	Intergenic	1	NR	8E-21	20.09691001300805	 	    .18	[0.14-0.22] increase in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry women	8,465 European ancestry individuals	15q13.1	15	28090674	OCA2	OCA2			4948			rs11855019-G	rs11855019	1	4778138	intron	0	NR	2E-24	23.69897000433602	 	    .28	[0.22-0.34] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry women	8,465 European ancestry individuals	6p25.3	6	396321	IRF4	IRF4			3662			rs12203592-T	rs12203592	0	12203592	intron	0	NR	9E-28	27.04575749056067	 	    .31	[0.25-0.36] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry women	8,465 European ancestry individuals	5p13.2	5	33958854	MATP	SLC45A2			51151			rs28777-C	rs28777	0	28777	intron	0	NR	9E-14	13.04575749056067	 	    .46	[0.34-0.58] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry women	8,465 European ancestry individuals	6p25.3	6	542159	EXOC2	EXOC2			55770			rs6918152-A	rs6918152	0	6918152	intron	0	NR	5E-7	6.30102999566398	 	    .11	[0.07-0.15] increase in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry women	8,465 European ancestry individuals	15q13.1	15	28120472	HERC2	HERC2			8924			rs12913832-A	rs12913832	0	12913832	intron	0	NR	1E-77	77	 	    .44	[0.40-0.48] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry women	8,465 European ancestry individuals	15q13.1	15	28760947	Intergenic	WHAMMP2 - PDCD6IPP2	440253	646278		        2.59	       28.89	rs8033165-T	rs8033165	0	8033165	Intergenic	1	NR	2E-12	11.69897000433602	 	    .15	[0.11-0.19] increase in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry women	8,465 European ancestry individuals	15q13.1	15	28090674	OCA2	OCA2			4948			rs11855019-G	rs11855019	1	4778138	intron	0	NR	6E-20	19.22184874961636	 	    .29	[0.23-0.35] decrease in hair color score	Illumina[528,173]	N
11/25/2008	18483556	Han J	05/16/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18483556?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry women	8,465 European ancestry individuals	16q24.3	16	89689495	MC1R	CDK10			8558			rs258322-T	rs258322	0	258322	intron	0	NR	2E-23	22.69897000433602	 	    .36	[0.28-0.44] increase in hair color score	Illumina[528,173]	N
11/25/2008	18463370	Maris JM	05/09/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18463370?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Chromosome 6p22 locus associated with clinically aggressive neuroblastoma.	Neuroblastoma	1,032 European ancestry cases, 2,043 European ancestry controls	720 European ancestry cases, 2,128 European ancestry controls	6p22.3	6	22139775	FLJ22536, FLJ44180	CASC15;CASC14			401237;729177			rs6939340-G	rs6939340	0	6939340	intron;intron	0	0.50	9E-15	14.04575749056067	 	   1.37	[1.27-1.49] 	Illumina[464,934]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q21.3	1	154453788	IL6R	IL6R			3570			rs4129267-?	rs4129267	0	4129267	intron	0	0.37	2E-57	56.69897000433601	(sIL-6R)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17q12	17	36463349	CCL4L2	TBC1D3F - ZNHIT3	84218	9326		       23.83	       23.28	rs4796217-?	rs4796217	0	4796217	Intergenic	1	0.34	4E-21	20.39794000867204	(MIPb)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q26	6	160597142	LPA	LPA			4018			rs7770628-?	rs7770628	0	7770628	intron	0	0.49	4E-10	9.397940008672037	(LPA)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	22q11.23	22	24596299	GGT1	GGT1			2678			rs5751901-?	rs5751901	0	5751901	intron	0	0.39	2E-7	6.698970004336019	(GGT1)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q23.1	11	112214593	IL18	BCO2			83875			rs2250417-?	rs2250417	0	2250417	intron	0	0.44	7E-13	12.15490195998574	(IL18)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	9q34.2	9	133273813	ABO	ABO			28			rs505922-?	rs505922	0	505922	intron	0	0.34	7E-40	39.15490195998574	(TNFA)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17p13.1	17	7514346	SHBG	POLR2A			5430			rs6761-?	rs6761	0	6761	UTR-3	0	0.31	3E-7	6.522878745280337	(SHBG)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q23.2	1	159678198	CRP	OR10J6P - CRPP1	401973	171422		       78.97	       26.75	rs12093699-?	rs12093699	0	12093699	Intergenic	1	0.29	6E-6	5.221848749616356	(CRP)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2q13	2	113074735	IL1RN	IL1F10			84639			rs6761276-?	rs6761276	0	6761276	missense	0	0.37	7E-6	5.154901959985742	(IL1RA)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1p21.1	1	102668353	COL11A1	DNAJA1P5 - COL11A1	94236	1301		      773.61	      208.11	rs10874639-?	rs10874639	0	10874639	Intergenic	1	0.12	3E-6	5.522878745280337	(Fibrinogen)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q21.1	1	147383114	CHD1L	LINC00624			100289211			rs4950322-?	rs4950322	0	4950322	ncRNA	0	0.21	2E-7	6.698970004336019	(Resistin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q21.1	1	147383114	CHD1L	LINC00624			100289211			rs4950322-?	rs4950322	0	4950322	ncRNA	0	0.21	7E-7	6.154901959985743	(Hgb)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p15	2	63369701	LOC51057	WDPCP			51057			rs11683229-?	rs11683229	0	11683229	intron	0	0.15	6E-6	5.221848749616356	(IL6)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p13.2	2	71731350	DYSF	DYSF - RPS20P10	8291	100271081		       44.59	      252.83	rs2900976-?	rs2900976	0	2900976	Intergenic	1	0.30	1E-6	5.999999999999999	(Albumin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p12	2	79695676	CTNNA2	CTNNA2			1496			rs11695685-?	rs11695685	0	11695685	intron	0	0.30	5E-7	6.30102999566398	(IL10)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p11.2	2	85472627	SH2D6	RNU7-64P - RPSAP22	100151662	100270874		       30.65	       18.30	rs7577642-?	rs7577642	0	7577642	Intergenic	1	0.27	7E-6	5.154901959985742	(sIL-6R)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2q23.1	2	148630399	EPC2	RPS29P8 - EPC2	100132376	26122		       34.98	       14.59	rs10191411-?	rs10191411	0	10191411	Intergenic	1	0.32	4E-6	5.397940008672037	(IL8)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	3p12.3	3	78449847	ROBO1	VDAC1P7 - MRPS17P3	100310839	359757		     1132.23	       75.26	rs9834373-?	rs9834373	0	9834373	Intergenic	1	0.17	4E-6	5.397940008672037	(GP130)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	5q35.1	5	169647052	DOCK2	DOCK2			1794			rs169082-?	rs169082	0	169082	intron	0	0.48	1E-6	5.999999999999999	(Leptin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6p21.33	6	31303939	HLA-C	TRNAI25			100189401			rs9461688-?	rs9461688	0	9461688		0	0.31	4E-6	5.397940008672037	(IL18)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q11.1	6	61987841	KHDRBS2	KHDRBS2			202559			rs6455128-?	rs6455128	0	6455128	intron	0	0.19	3E-7	6.522878745280337	(GOT (AST))	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q22.31	6	121581723	GJA1	GJA1 - SLC25A5P7	2697	442255		      132.00	       72.02	rs4541776-?	rs4541776	0	4541776	Intergenic	1	0.33	2E-6	5.698970004336018	(GGT)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q23.2	6	133539207	EYA4	LOC100507308			100507308			rs9402515-?	rs9402515	0	9402515	intron	0	0.09	1E-6	5.999999999999999	(Alpha-2 macroglobulin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	6q24.3	6	148466870	SASH1	SASH1			23328			rs6930337-?	rs6930337	0	6930337	intron	0	0.06	1E-6	5.999999999999999	(insulin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	7p21.3	7	9226758	NXPH1	RPL9P19 - GAPDHP68	100129634	100132601		      287.30	      388.15	rs1285407-?	rs1285407	0	1285407	Intergenic	1	0.35	1E-6	5.999999999999999	(TGF-b1)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	8q21.11	8	74600899	GDAP1,PI15	FLJ39080			441355			rs6472866-?	rs6472866	0	6472866	intron	0	0.42	8E-7	6.096910013008056	(myoglobin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	8q24.21	8	129968226	FAM49B	FAM49B			51571			rs10092658-?	rs10092658	0	10092658	intron	0	0.07	6E-6	5.221848749616356	(Aldolase)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	9q22.2	9	90124949	GADD45G,DIRAS2	IL6RP1 - OR7E31P	157916	375601		       42.21	       91.28	rs2081670-?	rs2081670	0	2081670	Intergenic	1	0.15	3E-6	5.522878745280337	(MIP-1b)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	9q31.2	9	105892815	TMEM38B	SLC25A6P5 - MIR8081	100129319	102465995		       42.22	      708.11	rs4742971-?	rs4742971	0	4742971	Intergenic	1	0.11	8E-7	6.096910013008056	(GPT (ALT))	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	10p12.31	10	18470700	CACNB2	CACNB2			783			rs7076247-?	rs7076247	0	7076247	intron	0	0.37	6E-6	5.221848749616356	(CRP)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	10p11.21	10	36359112	FZD8,ANKRD30A	PCAT5 - MTND5P17	102578074	100873353		      558.19	       73.75	rs1779876-?	rs1779876	0	1779876	Intergenic	1	0.10	3E-6	5.522878745280337	(Lipoprotein A)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11p15.5	11	2745052	KCNQ1	KCNQ1			3784			rs2237878-?	rs2237878	0	2237878	intron	0	0.07	1E-6	5.999999999999999	(Lactic dehydrogenase)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q14.1	11	83744664	DLG2	DLG2			1740			rs3885683-?	rs3885683	0	3885683	intron	0	0.11	8E-6	5.096910013008055	(MCP1)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q23.3	11	117166645	PAFAH1B2	PAFAH1B2			5049			rs7112513-?	rs7112513	0	7112513	intron	0	0.13	6E-9	8.221848749616356	(Soluble transferrin receptor)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q24.2	11	126939809	KIRREL3	KIRREL3;KIRREL3-AS2			84623;100874251			rs1939992-?	rs1939992	0	1939992	intron;nearGene-5	0	0.26	1E-6	5.999999999999999	(Total IGF-1)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12p12.3	12	15777871	EPS8	EPS8			2059			rs17415853-?	rs17415853	0	17415853	intron	0	0.02	7E-7	6.154901959985743	(Ferritin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12q12	12	41327628	PDZRN4,CNTN1	PDZRN4			29951			rs1880887-?	rs1880887	0	1880887	intron	0	0.03	1E-10	10	(Alkaline phosphatase)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12q24.11	12	110266682	ATP2A2	IFT81 - ATP2A2	28981	488		       47.89	       14.55	rs11065611-?	rs11065611	0	11065611	Intergenic	1	0.06	1E-7	7	(Alpha-1 globulin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12q24.33	12	131455375	GPR133	RPS6P20 - RPS6P21	100271262	100271263		      162.20	      212.11	rs10466868-?	rs10466868	0	10466868	Intergenic	1	0.12	1E-6	5.999999999999999	(Erythropoeitin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	13q12.11	13	21913486	FGF3	LINC00424 - NME1P1	100874182	100874501		       35.33	      185.68	rs17369571-?	rs17369571	0	17369571	Intergenic	1	0.16	1E-7	7	(IL1RA)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	13q12.12	13	23329652	SACS	SACS			26278			rs4770433-?	rs4770433	0	4770433	UTR-3	0	0.40	4E-6	5.397940008672037	(IL12)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	15q15.2	15	42692090	CDAN1	STARD9			57519			rs16957063-?	rs16957063	0	16957063	cds-synon	0	0.01	5E-7	6.30102999566398	(Ft4)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	15q21.1	15	48340956	DUT	DUT			1854			rs11637235-?	rs11637235	0	11637235	intron	0	0.28	3E-6	5.522878745280337	(Adiponectin)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	16q23.2	16	81270154	BCM01	BCMO1			53630			rs4889294-?	rs4889294	0	4889294	intron	0	0.47	5E-7	6.30102999566398	(IL1B)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17p12	17	14390704	HS3ST3B1	MGC12916 - RPS18P12	84815	388339		       84.96	      314.33	rs3848445-?	rs3848445	0	3848445	Intergenic	1	0.05	8E-9	8.096910013008056	(Ft3)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17q25.3	17	82450939	C17orf62	C17orf62			79415			rs9303029-?	rs9303029	0	9303029	nearGene-5	0	0.08	4E-7	6.397940008672037	(Free IGF1)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	18q11.2	18	24169651	OSBPL1A	OSBPL1A			114876			rs9635963-?	rs9635963	0	9635963	intron	0	0.18	2E-7	6.698970004336019	(SHBG)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	18q12.1	18	30561722	DSC3	MIR302F - DSC3	100302131	1825		      262.76	      428.36	rs2729409-?	rs2729409	0	2729409	Intergenic	1	0.26	3E-6	5.522878745280337	(Parathyroid hormone)	NR	NR	Illumina[496,032]	N
11/25/2008	18464913	Melzer D	05/09/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18464913?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	19p13.2	19	10102478	ANGPTL6	ANGPTL6			83854			rs8109578-?	rs8109578	0	8109578	intron	0	0.08	4E-7	6.397940008672037	(TSH)	NR	NR	Illumina[496,032]	N
11/25/2008	18463975	Kibriya MG	05/08/2008	Breast Cancer Res Treat	http://www.ncbi.nlm.nih.gov/pubmed/18463975?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	A pilot genome-wide association study of early-onset breast cancer.	Breast cancer	26 European ancestry cases, 3 Hispanic cases, 1 African American cases, 26 European ancestry controls, 3 Hispanic controls, 1 African American control	NA	16q23.1	16	74438798	GLG1	CLEC18B - GLG1	497190	2734		       17.25	        8.63	3-SNP haplotype 1	rs10871290	0	10871290	Intergenic	1	0.34	4E-7	6.397940008672037		NR	NR	Affymetrix[200,220]	N
11/25/2008	18471798	Valdes AM	05/08/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18471798?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies a prostaglandin-endoperoxide synthase 2 variant involved in risk of knee osteoarthritis.	Knee osteoarthritis	357 European ancestry cases, 285 European ancestry controls	1,177 European ancestry cases, 2,372 European ancestry controls	1q31.1	1	186755871	PTGS2, PLA2G4A	PTGS2 - PLA2G4A	5743	5321		       75.44	       73.03	rs4140564-?	rs4140564	0	4140564	Intergenic	1	0.05	3E-6	5.522878745280337	 	   1.59	[1.31-1.94] 	Illumina[413,461]	N
11/25/2008	18471798	Valdes AM	05/08/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18471798?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies a prostaglandin-endoperoxide synthase 2 variant involved in risk of knee osteoarthritis.	Knee osteoarthritis	357 European ancestry cases, 285 European ancestry controls	1,177 European ancestry cases, 2,372 European ancestry controls	2q33.3	2	205285870	PARD3B	PARD3B			117583			rs1207421-?	rs1207421	0	1207421	intron	0	0.09	6E-6	5.221848749616356	 	   1.46	[1.24-1.73] 	Illumina[413,461]	N
11/25/2008	18454146	Chambers JC	05/04/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18454146	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry men	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	18q21.32	18	60217517	MC4R	RPS3AP49 - MC4R	400652	4160		       67.11	      153.81	rs12970134-A	rs12970134	0	12970134	Intergenic	1	0.36	2E-9	8.698970004336019	(waist circumference)	    .88	[0.59-1.17] cm increase	Illumina[308,067]	N
11/25/2008	18454146	Chambers JC	05/04/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18454146	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry men	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	2p23.3	2	27508073	GCKR	GCKR			2646			rs1260326-?	rs1260326	0	1260326	missense	0	NR	4E-8	7.397940008672037	(triglycerides)	NR	NR	Illumina[308,067]	N
11/25/2008	18454146	Chambers JC	05/04/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18454146	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry men	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	8p21.3	8	20007664	LPL	LPL - RPL30P9	4023	100270981		       40.41	      105.67	rs2083637-?	rs2083637	0	2083637	Intergenic	1	NR	5E-6	5.301029995663981	(HDL cholesterol)	NR	NR	Illumina[308,067]	N
11/25/2008	18454146	Chambers JC	05/04/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18454146	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry men	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-?	rs3764261	0	3764261	Intergenic	1	NR	1E-27	27	(HDL cholesterol)	NR	NR	Illumina[308,067]	N
11/25/2008	18454148	Loos RJ	05/04/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18454148?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants near MC4R are associated with fat mass, weight and risk of obesity.	Body mass index	16,876 European ancestry adults	60,352 European ancestry adults, 5,988 European ancestry children	18q21.32	18	60183864	MC4R	RPS3AP49 - MC4R	400652	4160		       33.46	      187.47	rs17782313-C	rs17782313	0	17782313	Intergenic	1	0.24	3E-15	14.52287874528034	 	    .05	[0.04-0.06] unit increase in log(BMI)	Affymetrix[344,883]	N
11/25/2008	18454148	Loos RJ	05/04/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18454148?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants near MC4R are associated with fat mass, weight and risk of obesity.	Body mass index	16,876 European ancestry adults	60,352 European ancestry adults, 5,988 European ancestry children	16q12.2	16	53775335	FTO	FTO			79068			rs1121980-?	rs1121980	0	1121980	intron	0	NR	4E-8	7.397940008672037	 	    .06	[0.04-0.08] unit increase in log(BMI)	Affymetrix[344,883]	N
11/25/2008	18449908	Poduslo SE	04/30/2008	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/18449908?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome screen of late-onset Alzheimer's extended pedigrees identifies TRPC4AP by haplotype analysis.	Alzheimer's disease	11 European ancestry cases and 19 European ancestry controls from 2 affected families, 60 controls	199 European ancestry cases, 85 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [469,218]	N
11/25/2008	18455228	Richards JB	04/29/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18455228?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study.	Bone mineral density	2,094 European ancestry women	6,463 European ancestry individuals	8q24.12	8	118911634	TNFRSF11B	RPS26P35 - TNFRSF11B	441377	4982		      149.41	       11.92	rs4355801-A	rs4355801	0	4355801	Intergenic	1	0.53	8E-10	9.096910013008054	 	    .09	[NR] SD decrease	Illumina [314,075]	N
11/25/2008	18455228	Richards JB	04/29/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18455228?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study.	Bone mineral density	2,094 European ancestry women	6,463 European ancestry individuals	11q13.2	11	68433827	LRP5	LRP5			4041			rs3736228-T	rs3736228	0	3736228	missense	0	0.14	6E-12	11.22184874961635	 	    .13	[NR] SD decrease	Illumina [314,075]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	1p36.12	1	22371954	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-A	rs7524102	0	7524102	Intergenic	1	0.82	5E-16	15.30102999566398		    .15	[0.11-0.19] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	6	151612040	ESR1	CCDC170			80129			rs1038304-G	rs1038304	0	1038304	intron	0	0.47	5E-9	8.301029995663981		    .08	[0.06-0.11] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	8q24.12	8	119039999	OPG	COLEC10			10584			rs6993813-C	rs6993813	0	6993813	intron	0	0.50	3E-11	10.52287874528034		    .09	[0.07-0.12] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	13q14.11	13	42378009	RANKL	FABP3P2 - TNFSF11	56677	8600		        8.25	      184.73	rs9594738-T	rs9594738	0	9594738	Intergenic	1	0.56	2E-8	7.698970004336018		    .10	[0.06-0.13] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	6	151580274	ESR1, C6orf97	CCDC170			80129			rs4870044-T	rs4870044	0	4870044	intron	0	0.28	2E-7	6.698970004336019		    .08	[0.05-0.11] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	18q21.33	18	62414860	RANK	TNFRSF11A - RPL17P44	8792	100129584		       27.15	         .78	rs3018362-A	rs3018362	0	3018362	Intergenic	1	0.35	1E-6	5.999999999999999		    .07	[0.04-0.10] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	1p36.12	1	22371954	ZBTB40	MIR4418 - ZBTB40	100616433	9923		      105.65	       79.90	rs7524102-A	rs7524102	0	7524102	Intergenic	1	0.82	9E-9	8.045757490560675		    .11	[0.07-0.15] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6p21.32	6	32276850	MHC, C6orf10	C6orf10			10665			rs3130340-T	rs3130340	0	3130340	intron	0	0.79	1E-7	7		    .10	[0.06-0.13] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	6	151580274	ESR1	CCDC170			80129			rs4870044-T	rs4870044	0	4870044	intron	0	0.28	2E-11	10.69897000433602		    .11	[0.08-0.14] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	8q24.12	8	119032590	OPG	COLEC10			10584			rs6469804-A	rs6469804	0	6469804	intron	0	0.51	7E-15	14.15490195998574		    .12	[0.09-0.15] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	13q14.11	13	42458457	RANKL	FABP3P2 - TNFSF11	56677	8600		       88.70	      104.28	rs9594759-T	rs9594759	0	9594759	Intergenic	1	0.62	2E-21	20.69897000433602		    .17	[0.14-0.21] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	2p16.2	2	54457420	SPTBN1	SPTBN1			6711			rs11898505-G	rs11898505	0	11898505	intron	0	0.67	8E-7	6.096910013008056		    .08	[0.05-0.11] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	6	151612040	ESR1, C6orf97	CCDC170			80129			rs1038304-G	rs1038304	0	1038304	intron	0	0.47	4E-11	10.39794000867204		    .10	[0.07-0.13] s.d. decrease	Illumina[301,019]	N
11/25/2008	18445777	Styrkarsdottir U	04/29/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18445777?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	6q25.1	6	151747229	ESR1, C6orf97	ESR1			2099			rs1999805-C	rs1999805	0	1999805	intron	0	0.44	2E-8	7.698970004336018		    .09	[0.06-0.12] s.d. decrease	Illumina[301,019]	N
11/25/2008	18369103	Walsh T	04/25/2008	Science	http://www.ncbi.nlm.nih.gov/pubmed/18369103?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia.	Schizophrenia	150 cases of European, African American, Asian unspecified, Pacific Islander, and American Indian ancestries, 219 European ancestry controls, 49 African American controls	83 child cases and 154 parental controls of European, African American, Asian unspecified, Pacific Islander, and American Indian ancestries	Pending			Pending	 - 						Pending	Pending					Pending	Pending		Pending	Pending	Pending	Illumina[~550,000]	Y
11/25/2008	18439552	Reiner AP	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439552?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.	C-reactive protein	909 European ancestry individuals	5,106 European ancestry individuals	12q24.31	12	121001630	HNF1A	HNF1A			6927			rs1169310-A	rs1169310	0	1169310	UTR-3	0	0.38	2E-8	7.698970004336018	 	    .13	[0.08-0.17] mg/l decrease in log(CRP) level	Illumina[317,000]	N
11/25/2008	18439552	Reiner AP	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439552?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.	C-reactive protein	909 European ancestry individuals	5,106 European ancestry individuals	19q13.32	19	44892362	APOE	TOMM40			10452			rs2075650-?	rs2075650	0	2075650	intron	0	NR	1E-7	7	 	NR	NR	Illumina[317,000]	N
11/25/2008	18439552	Reiner AP	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439552?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.	C-reactive protein	909 European ancestry individuals	5,106 European ancestry individuals	1q23.2	1	159730249	CRP	CRP - RPL27P2	1401	646446		       15.66	       28.90	rs11265260-?	rs11265260	0	11265260	Intergenic	1	NR	7E-6	5.154901959985742	 	NR	NR	Illumina[317,000]	N
11/25/2008	18439548	Ridker PM	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439548?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry women	NA	1p31.3	1	65640261	LEPR	LEPR - PDE4B	3953	5142		        2.77	      152.25	rs1892534-A	rs1892534	0	1892534	Intergenic	1	NR	7E-21	20.15490195998574	 	    .17	[NR] mg/dl decrease	Illumina[336,108]	N
11/25/2008	18439548	Ridker PM	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439548?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry women	NA	12q24.31	12	120987058	HNF1A	HNF1A			6927			rs7310409-A	rs7310409	0	7310409	intron	0	NR	7E-17	16.15490195998574	 	    .15	[NR] mg/dl decrease	Illumina[336,108]	N
11/25/2008	18439548	Ridker PM	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439548?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry women	NA	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-A	rs780094	0	780094	intron	0	NR	7E-15	14.15490195998574	 	    .14	[NR] mg/dl increase	Illumina[336,108]	N
11/25/2008	18439548	Ridker PM	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439548?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry women	NA	12q23.2	12	103101373	Unknown	ASCL1 - C12orf42	429	374470		      140.86	      136.22	rs10778213-G	rs10778213	0	10778213	Intergenic	1	NR	1E-10	10	 	    .12	[NR] mg/dl decrease	Illumina[336,108]	N
11/25/2008	18439548	Ridker PM	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439548?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry women	NA	1q21.3	1	154454494	IL6R	IL6R			3570			rs8192284-?	rs8192284	1	2228145	missense	0	NR	2E-8	7.698970004336018	 	    .10	[NR] mg/dl decrease	Illumina[336,108]	N
11/25/2008	18439548	Ridker PM	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439548?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry women	NA	1q23.2	1	159714875	CRP	CRP			1401			rs3091244-?	rs3091244	0	3091244	nearGene-5	0	NR	6E-28	27.22184874961636	 	    .20	[NR] mg/dl increase	Illumina[336,108]	N
11/25/2008	18439548	Ridker PM	04/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18439548?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry women	NA	19q13.32	19	44906745	APOE	APOE			348			rs769449-?	rs769449	0	769449	intron	0	NR	9E-21	20.04575749056067	 	    .26	[NR] mg/dl decrease	Illumina[336,108]	N
11/25/2008	18403759	Ober C	04/09/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18403759?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Effect of variation in CHI3L1 on serum YKL-40 level, risk of asthma, and lung function.	YKL-40 levels	632 Hutterite individuals	443 European ancestry cases, 491 European ancestry controls, 206 European ancestry individuals	1q32.1	1	203186754	CHI3L1	CHI3L1			1116			rs4950928-G	rs4950928	0	4950928	UTR-5	0	0.29	1E-13	13	 	    .30	[NR] ng/ml decrease	Affymetrix[290,325]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	3q23	3	141383991	ZBTB38	ZBTB38			253461			rs6763931-A	rs6763931	0	6763931	intron	0	0.45	1E-27	27		   7.40	[6.03-8.77] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	7p22.3	7	2723468	GNA12	AMZ1 - GNA12	155185	2768		        8.03	        4.64	rs798544-G	rs798544	0	798544	Intergenic	1	0.72	7E-15	14.15490195998574		   5.90	[6.03-8.77] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q24.1	6	142446496	GPR126	GPR126			57211			rs3748069-A	rs3748069	0	3748069	nearGene-3	0	0.74	5E-14	13.30102999566398		   6.50	[5.44-9.36] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	4q31.21	4	144653692	HHIP	HHIP			64399			rs1812175-C	rs1812175	0	1812175	intron	0	0.86	1E-11	11		   8.30	[5.95-10.65] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p24.3	6	7719826	BMP6	RPL29P1 - BMP6	134756	654		       98.94	        6.95	rs12198986-A	rs12198986	0	12198986	Intergenic	1	0.50	2E-11	10.69897000433602		   6.80	[4.84-8.76] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	1q21.2	1	149920979	Histone class 2A,MTMR11, SV2A, SF3B4	SV2A - SF3B4	9900	10262		        3.10	        2.34	rs11205277-G	rs11205277	0	11205277	Intergenic	1	0.44	1E-10	10		   5.10	[3.53-6.67] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	1q24.3	1	172220749	DNM3	DNM3			26052			rs678962-G	rs678962	0	678962	intron	0	0.22	3E-8	7.522878745280337		   5.40	[3.44-7.36] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	1q25.3	1	184051811	C1orf19,GLT25D2	TSEN15			116461			rs2274432-T	rs2274432	0	2274432	missense	0	0.37	8E-9	8.096910013008056		   5.30	[3.54-7.06] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2p16.1	2	55869757	EFEMP1, PNPT1	EFEMP1			2202			rs3791679-T	rs3791679	0	3791679	intron	0	0.81	6E-11	10.22184874961635		   5.80	[4.04-7.56] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	4p15.31	4	18016107	LCORL, NCAPG	LCORL			254251			rs6830062-T	rs6830062	0	6830062	intron	0	0.89	1E-10	10		   6.30	[4.34-8.26] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p22.2	6	26233159	Histone class 1, Butyrophilin genes	HIST1H2APS3			387323			rs10946808-A	rs10946808	0	10946808		0	0.70	6E-10	9.221848749616356		   5.60	[3.84-7.36] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.33	6	32082290	HLA class III	TNXB			7148			rs185819-T	rs185819	0	185819	missense	0	0.52	3E-8	7.522878745280337		   5.20	[3.44-6.96] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.31	6	34227234	HMGA1, LBH	TRNAI25			100189401			rs1776897-C	rs1776897	0	1776897		0	0.07	1E-8	8		   8.80	[5.66-11.94] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.31	6	35435008	ANKS1A, TCP11, ZNF76, DEF6,SCUBE3	TRNAI25			100189401			rs4713858-G	rs4713858	0	4713858		0	0.86	4E-8	7.397940008672037		   6.80	[4.45-9.15] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	7q21.2	7	92635096	CDK6, PEX1, GATAD1, ERVWE1	CDK6			1021			rs2282978-C	rs2282978	0	2282978	intron	0	0.29	1E-8	8		   5.80	[3.84-7.76] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	8q12.1	8	56183249	PLAG1, MOS, CHCHD7,RDHE2, RPS20,LYN, TGS1, PENK	PLAG1			5324			rs10958476-C	rs10958476	0	10958476	intron	0	0.23	7E-8	7.154901959985742		   5.40	[3.44-7.36] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	8q21.11	8	77247943	PXMP3, ZFHX4	HIGD1AP18 - PKIA	100874456	5569		      233.89	     1268.16	rs7846385-C	rs7846385	0	7846385	Intergenic	1	0.27	5E-8	7.30102999566398		   5.00	[3.24-6.76] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	9q31.2	9	106870072	ZNF462	ZNF462			58499			rs4743034-A	rs4743034	0	4743034	intron	0	0.23	2E-8	7.698970004336018		   5.30	[3.54-7.06] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12q14.3	12	65965972	HMGA2	HMGA2			8091			rs8756-C	rs8756	0	8756	UTR-3	0	0.52	2E-16	15.69897000433602		   6.60	[5.03-8.17] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	15q26.3	15	100246066	ADAMTS17	ADAMTS17			170691			rs4533267-A	rs4533267	0	4533267	intron	0	0.28	3E-8	7.522878745280337		   5.60	[3.64-7.56] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q11.2	17	30920697	CRLF3, ATAD5, CENTA2, RNF135	ADAP2			55803			rs3760318-C	rs3760318	0	3760318	nearGene-5	0	0.63	2E-9	8.698970004336019		   6.00	[4.04-7.96] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q22	17	56772968	NOG, DGKE, TRIM25, COIL, RISK	NOG - C17orf67	9241	339210		      177.38	       18.95	rs4794665-A	rs4794665	0	4794665	Intergenic	1	0.48	1E-7	7		   3.60	[2.23-4.97] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q23.2	17	61419916	BCAS3, NACA2, TBX2, TBX4	C17orf82 - TBX4	388407	9496		        6.64	       31.86	rs757608-T	rs757608	0	757608	Intergenic	1	0.35	6E-8	7.221848749616355		   4.40	[2.83-5.97] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	18q11.2	18	23144364	CABLES1, RBBP8, C18orf45	CABLES1			91768			rs4800148-A	rs4800148	0	4800148	intron	0	0.79	4E-9	8.397940008672036		   6.40	[4.24-8.56] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	20p12.3	20	6640246	BMP2	CASC20 - BMP2	101929244	650		      111.79	      127.85	rs967417-C	rs967417	0	967417	Intergenic	1	0.53	2E-8	7.698970004336018		   4.30	[2.73-5.87] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2p23.3	2	25053415	ADCY3, RBJ, POMC, DNMT3A, DTNB	EFR3B			22979			rs6733301-G	rs6733301	0	6733301	intron	0	0.87	8E-7	6.096910013008056		   7.50	[4.56-10.44] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2q35	2	219069626	IHH, CRYBA2, FEV, SLC23A3, TUBA1	MIR3131 - NHEJ1	100422957	79840		       10.88	        5.70	rs1052483-C	rs1052483	0	1052483	Intergenic	1	0.91	1E-6	5.999999999999999		   6.90	[4.16-9.64] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2q37.1	2	231931900	NPPC, DIS3L2, COPS7B, PDE6D, PTMA	NPPC - DIS3L2	4880	129563		        5.57	       29.68	rs749052-A	rs749052	0	749052	Intergenic	1	0.94	1E-6	5.999999999999999		   8.70	[5.17-12.23] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	3q26.2	3	168119960	GOLIM4, SERPINI1	GOLIM4 - EGFEM1P	27333	93556		       24.04	      129.56	rs4345115-T	rs4345115	0	4345115	Intergenic	1	0.63	7E-6	5.154901959985742		   4.40	[2.44-6.36] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	4q21.21	4	81228677	BMP3, PRKG2, RASGEF1B	PRKG2 - RASGEF1B	5593	153020		       13.56	      197.72	rs710841-A	rs710841	0	710841	Intergenic	1	0.27	2E-6	5.698970004336018		   5.00	[3.04-6.96] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	5q31.1	5	135036995	PITX1, PCBD2, CATSPER3, TXNDC15,DDX46, CAMLG	C5orf66			100996485			rs31198-T	rs31198	0	31198	intron	0	0.75	8E-6	5.096910013008055		   4.80	[2.64-6.96] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p22.3	6	17699091	NUP153, CAP2, KIF13A	NUP153			9972			rs12199222-T	rs12199222	0	12199222	intron	0	0.33	7E-7	6.154901959985743		   4.40	[2.64-6.16] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6p21.1	6	45127426	SUPT3H, RUNX2	SUPT3H			8464			rs9395066-C	rs9395066	0	9395066	intron	0	0.48	8E-6	5.096910013008055		   3.50	[1.93-5.07] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q16.3	6	104970103	LIN28B, HACE1, BVES, POPDC3	LIN28B			389421			rs314268-C	rs314268	0	314268	intron	0	0.34	8E-7	6.096910013008056		   4.60	[2.84-6.36] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q21	6	109420812	PPIL6, CD164, SMPD2,MNICAL1,ZBTB24	PPIL6			285755			rs9487094-G	rs9487094	0	9487094	intron	0	0.69	4E-6	5.397940008672037		   4.70	[2.74-6.66] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q22.32	6	126514509	C6orf173	MIR588 - VIMP1	693173	100130535		       29.80	       87.85	rs1490388-T	rs1490388	0	1490388	Intergenic	1	0.42	6E-7	6.221848749616355		   4.80	[2.84-6.76] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	6q23.1	6	130037283	L3MBTL3, SAMD3	L3MBTL3			84456			rs6899976-G	rs6899976	0	6899976	intron	0	0.28	6E-6	5.221848749616356		   3.80	[2.23-5.37] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	9q22.1	9	88196267	SPIN1, CCRK	SPATA31C2 - RPSAP49	645961	401537		       57.80	      128.11	rs2814828-T	rs2814828	0	2814828	Intergenic	1	0.25	9E-7	6.045757490560675		   5.40	[3.24-7.56] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	9q32	9	114287611	COL27A1	COL27A1			85301			rs946053-T	rs946053	0	946053	intron	0	0.52	2E-7	6.698970004336019		   4.40	[2.83-5.97] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12p13.2	12	11702690	ETV6	ETV6			2120			rs2187642-A	rs2187642	0	2187642	intron	0	0.39	2E-6	5.698970004336018		   4.60	[2.64-6.56] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12p12.2	12	20605679	PDE3A, SLCO1C1, SLCO1B3	PDE3A			5139			rs11611208-A	rs11611208	0	11611208	intron	0	0.06	2E-6	5.698970004336018		  11.40	[6.7-16.1] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12q15	12	69434901	LYZ,YEATS4,FRS2,CPSF6,CCT2,LRRC10	RPS26P45 - FRS2	100271570	10818		       11.91	       35.45	rs11177669-A	rs11177669	0	11177669	Intergenic	1	0.31	3E-6	5.522878745280337		   4.50	[2.54-6.46] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12q22	12	93583178	SOCS2, MRPL42, CRADD, UBE2N	SOCS2			8835			rs3825199-C	rs3825199	0	3825199	intron	0	0.24	2E-7	6.698970004336019		   6.20	[3.85-8.55] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	13q14.3	13	50532419	DLEU7	RPL34P26 - DLEU7	100130718	220107		      170.66	      180.20	rs1239947-G	rs1239947	0	1239947	Intergenic	1	0.35	8E-6	5.096910013008055		   3.80	[2.23-5.37] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	15q25.2	15	83647132	ADAMTSL3, SH3GL3	SH3GL3 - ADAMTSL3	6457	57188		       28.39	        6.95	rs2554380-T	rs2554380	0	2554380	Intergenic	1	0.78	9E-7	6.045757490560675		   4.50	[2.74-6.26] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	16q24.1	16	84954073	ZDHHC7, CRISPLD2, USP10	CRISPLD2 - ZDHHC7	83716	55625		       44.56	       20.39	rs2326458-C	rs2326458	0	2326458	Intergenic	1	0.26	8E-7	6.096910013008056		   5.10	[3.14-7.06] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q23.3	17	63635604	MAP3K3, WDR68, LYK5, MT1F	MAP3K3			4215			rs7209435-C	rs7209435	0	7209435	intron	0	0.27	7E-7	6.154901959985743		   4.80	[2.84-6.76] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	19p13.2	19	8607115	ADAMTS10, MYO1F, PRAM1, OR2Z1	ADAMTS10			81794			rs7249094-G	rs7249094	0	7249094	intron	0	0.59	1E-6	5.999999999999999		   4.30	[2.54-6.06] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	22q11.23	22	23250864	BCR, GNAZ, RTDR1, IGLL1	BCR			613			rs5751614-A	rs5751614	0	5751614	intron	0	0.49	6E-6	5.221848749616356		   4.30	[2.34-6.26] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	Xq21.1	23	79393696	ITM2A	ITM2A - TBX22	9452	50945		       26.14	      621.06	rs1474563-T	rs1474563	0	1474563	Intergenic	1	0.58	3E-6	5.522878745280337		   3.50	[1.93-5.07] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	20q11.22	20	35321981	UQCC, GDF5, CEP250, EIF6, MMP24	UQCC1			55245			rs6088792-T	rs6088792	0	6088792	intron	0	0.26	8E-7	6.096910013008056		   4.70	[2.74-6.66] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391951	Gudbjartsson DF	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391951?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	14q32.12	14	91960878	TRIP11, FBLN5, ATXN3, CPSF2	FBLN5 - TRIP11	10516	9321		       13.18	        7.02	rs7153027-A	rs7153027	0	7153027	Intergenic	1	0.52	1E-10	10		   5.70	[3.94-7.46] % s.d. taller	Illumina and Affymetrix[up to 304,226]	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	3q23	3	141386728	ZBTB38	ZBTB38			253461			rs724016-G	rs724016	0	724016	intron	0	0.48	8E-22	21.09691001300805	 	    .37	[0.29-0.45] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	6q24.1	6	142382740	GPR126	GPR126			57211			rs4896582-A	rs4896582	0	4896582	intron	0	0.27	2E-18	17.69897000433602	 	    .38	[0.28-0.48] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	6p22.2	6	26233159	HIST1H1D	HIST1H2APS3			387323			rs10946808-G	rs10946808	0	10946808		0	0.28	4E-17	16.39794000867203		    .36	[0.26-0.46] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	4q31.21	4	144728869	HHIP	HHIP			64399			rs1492820-G	rs1492820	0	1492820	intron	0	0.48	1E-11	11	 	    .29	[0.21-0.37] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	14q32.12	14	91993614	TRIP11,ATXN3	TRIP11			9321			rs8007661-T	rs8007661	0	8007661	intron	0	0.30	6E-10	9.221848749616356	 	    .42	[0.30-0.54] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	6q16.3	6	104959787	LIN28B	LIN28B			389421			rs314277-A	rs314277	0	314277	intron	0	0.13	1E-8	8	 	    .41	[0.26-0.59] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	19p13.3	19	2170955	DOT1L	DOT1L			84444			rs12986413-T	rs12986413	0	12986413	intron	0	0.45	3E-8	7.522878745280337	 	    .31	[0.21-0.46] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	15q25.2	15	83617740	SH3GL3,ADAMTSL3	SH3GL3			6457			rs2562784-G	rs2562784	0	2562784	intron	0	0.17	6E-8	7.221848749616355	 	    .34	[0.21-0.48] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	8q12.1	8	56243039	CHCHD7,RDHE2	CHCHD7 - SDR16C5	79145	195814		       24.42	       56.97	rs9650315-T	rs9650315	0	9650315	Intergenic	1	0.13	4E-7	6.397940008672037	 	    .43	[0.59-1.07] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	7q21.2	7	92627591	CDK6	CDK6			1021			rs2040494-C	rs2040494	0	2040494	intron	0	0.50	4E-7	6.397940008672037	 	    .26	[0.36-0.65] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	7q36.3	7	158932098	WDR60	WDR60			55112			rs2730245-G	rs2730245	0	2730245	intron	0	0.33	3E-7	6.522878745280337	 	    .32	[0.19-0.44] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	9q34.11	9	130588697	FUBP3	FUBP3			8939			rs7466269-G	rs7466269	0	7466269	intron	0	0.33	8E-7	6.096910013008056	 	    .27	[0.38-0.69] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	9q33.1	9	116372517	PAPPA	PAPPA			5069			rs7869550-G	rs7869550	0	7869550	intron	0	0.24	1E-6	5.999999999999999	 	    .33	[0.45-0.82] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	17q22	17	56352794	ANKFN1	ANKFN1			162282			rs12449568-C	rs12449568	0	12449568	intron	0	0.47	2E-6	5.698970004336018	 	    .25	[0.15-0.35] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	16p13.3	16	625680	RAB40C	RAB40C			57799			rs763014-C	rs763014	0	763014	intron	0	0.43	5E-6	5.301029995663981	 	    .24	[0.12-0.29] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	14q13.3	14	36530844	NKX2-1	NKX2-1-AS1 - PHKBP2	100506237	5259		        7.83	        2.98	rs17104630-G	rs17104630	0	17104630	Intergenic	1	0.04	8E-6	5.096910013008055	 	    .42	[0.61-1.10] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	12q14.3	12	65964567	HMGA2	HMGA2			8091			rs1042725-T	rs1042725	0	1042725	UTR-3	0	0.49	3E-20	19.52287874528034	 	    .48	[0.58-1.09] cm shorter	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391950	Lettre G	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391950?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	20q11.22	20	35319358	GDF5,UQCC	UQCC1			55245			rs6060369-C	rs6060369	0	6060369	intron	0	0.36	1E-16	16	 	    .44	[0.34-0.72] cm taller	Affymetrix and Illumina[2,260,683](imputed)	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	3q23	3	141375367	ZBTB38	ZBTB38			253461			rs6440003-A	rs6440003	0	6440003	intron	0	0.44	2E-24	23.69897000433602		    .07	[0.04-0.09] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	7q21.2	7	92635096	CDK6	CDK6			1021			rs2282978-C	rs2282978	0	2282978	intron	0	0.33	8E-23	22.09691001300806		    .09	[0.06-0.12] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	12q14.3	12	65964567	HMGA2	HMGA2			8091			rs1042725-C	rs1042725	0	1042725	UTR-3	0	0.49	3E-18	17.52287874528034		    .05	[0.03-0.08] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	20q11.22	20	35326405	GDF5	UQCC1			55245			rs6060373-A	rs6060373	0	6060373	intron	0	0.62	2E-17	16.69897000433602		    .08	[0.05-0.11] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	4p15.31	4	17943217	LCORL	LCORL			254251			rs16896068-A	rs16896068	0	16896068	intron	0	0.16	2E-13	12.69897000433602		    .07	[0.03-0.11] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	6q22.32	6	126645162	LOC387103	PRELID1P1 - RPS4XP9	728666	442257		         .88	       37.85	rs4549631-C	rs4549631	0	4549631	Intergenic	1	0.50	5E-13	12.30102999566398		    .06	[0.03-0.08] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	2p16.1	2	55884174	EFEMP1	EFEMP1			2202			rs3791675-C	rs3791675	0	3791675	intron	0	0.77	2E-12	11.69897000433602		    .09	[0.05-0.12] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	6p21.31	6	34651116	C6orf106	C6orf106			64771			rs2814993-A	rs2814993	0	2814993	intron	0	0.15	4E-12	11.39794000867204		    .09	[0.05-0.13] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	9q22.32	9	95497421	PTCH1	PTCH1			5727			rs10512248-G	rs10512248	0	10512248	intron	0	0.31	4E-11	10.39794000867204		    .05	[0.02-0.07] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	1p12	1	118341350	SPAG17	RNA5SP56 - PSMC1P12	100873294	644094		       76.86	      272.76	rs12735613-A	rs12735613	0	12735613	Intergenic	1	0.24	4E-11	10.39794000867204		    .08	[0.05-0.11] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	12q22	12	93584728	SOCS2	SOCS2			8835			rs11107116-G	rs11107116	0	11107116	intron	0	0.77	6E-10	9.221848749616356		    .04	[0.01-0.07] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	4q31.21	4	144721927	HHIP	HHIP			64399			rs6854783-A	rs6854783	0	6854783	intron	0	0.43	2E-9	8.698970004336019		    .06	[0.03-0.08] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	1q42.13	1	227610249	ZNF678	ZNF678			339500			rs1390401-A	rs1390401	0	1390401	intron	0	0.82	5E-9	8.301029995663981		    .04	[0.01-0.08] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	13q14.3	13	50537219	DLEU7	RPL34P26 - DLEU7	100130718	220107		      175.46	      175.40	rs3116602-G	rs3116602	0	3116602	Intergenic	1	0.21	7E-9	8.154901959985743		    .04	[0.00-0.07] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	1p34.2	1	41065199	SCMH1	SCMH1			22955			rs6686842-C	rs6686842	0	6686842	intron	0	0.56	2E-8	7.698970004336018		    .05	[0.02-0.08] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	15q25.2	15	83899406	ADAMTSL3	ADAMTSL3			57188			rs10906982-A	rs10906982	0	10906982	intron	0	0.52	2E-8	7.698970004336018		    .05	[0.02-0.07] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	2q35	2	219079124	IHH	NHEJ1			79840			rs6724465-A	rs6724465	0	6724465	intron	0	0.10	2E-8	7.698970004336018		    .06	[0.02-0.10] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	3q22.2	3	134514250	ANAPC13,CEP63	CEP63			80254			rs10935120-A	rs10935120	0	10935120	intron	0	0.33	7E-8	7.154901959985742		    .06	[0.03-0.09] s.d. shorter - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	15q26.1	15	88816458	ACAN	ACAN			176			rs8041863-A	rs8041863	0	8041863	intron	0	0.47	8E-8	7.096910013008055		    .04	[0.01-0.06] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18391952	Weedon MN	04/06/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18391952?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	18q21.1	18	49464790	DYM	MIR4744 - C18orf32	100616420	497661		      415.02	       16.39	rs8099594-A	rs8099594	0	8099594	Intergenic	1	0.65	3E-7	6.522878745280337		    .05	[0.02-0.08] s.d. taller - among males	Affymetrix[402,951]	N
11/25/2008	18369459	Liu Y	04/04/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18369459?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	13q14.11	13	39776775	COG6	COG6			57511			rs7993214-?	rs7993214	0	7993214	intron	0	0.65	2E-6	5.698970004336018		   1.41	[1.22-1.61] 	Illumina[305,983]	N
11/25/2008	18369459	Liu Y	04/04/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18369459?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	6	31306778	HLA-C	TRNAI25			100189401			rs10484554-T	rs10484554	0	10484554		0	0.15	2E-39	38.69897000433601	 	   2.80	[2.40-3.30] 	Illumina[305,983]	N
11/25/2008	18369459	Liu Y	04/04/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18369459?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	6p21.33	6	31464003	HLA-C	HCP5			10866			rs2395029-C	rs2395029	0	2395029	ncRNA	0	0.03	2E-26	25.69897000433602	 	   4.10	[3.10-5.30] 	Illumina[305,983]	N
11/25/2008	18385676	Amos CI	04/03/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18385676?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.	Lung cancer	1,154 European ancestry cases, 1,137 European ancestry controls	2,724 European ancestry cases, 3,694 European ancestry controls	15q25.1	15	78513681	CHRNA3, CHRNA5, PSMA4, LOC123688	HYKK			123688			rs8034191-G	rs8034191	0	8034191	intron	0	NR	3E-18	17.52287874528034	 	   1.30	[1.15-1.47] 	Illumina[317,498]	N
11/25/2008	18385676	Amos CI	04/03/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18385676?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.	Lung cancer	1,154 European ancestry cases, 1,137 European ancestry controls	2,724 European ancestry cases, 3,694 European ancestry controls	1q23.2	1	159711078	CRP	CRPP1 - CRP	171422	1401		        5.48	        1.21	rs2808630-G	rs2808630	0	2808630	Intergenic	1	NR	7E-6	5.154901959985742	 	   1.22	[1.10-1.35] 	Illumina[317,498]	N
11/25/2008	18385676	Amos CI	04/03/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18385676?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.	Lung cancer	1,154 European ancestry cases, 1,137 European ancestry controls	2,724 European ancestry cases, 3,694 European ancestry controls	3q28	3	190632672	IL1RAP	IL1RAP			3556			rs7626795-G	rs7626795	0	7626795	intron	0	NR	8E-6	5.096910013008055	 	   1.16	[1.05-1.28] 	Illumina[317,498]	N
11/25/2008	18385738	Hung RJ	04/03/2008	Nature	http://www.ncbi.nlm.nih.gov/pubmed/18385738?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25.	Lung cancer	1,926 European ance other ancestry cases, 2,522 European and other ancestry controls	332 European ancestry cases, 462 European ancestry controls, 2,181 European and other ancestry cases, 4,290 European and other ancestry controls	15q25.1	15	78513681	CHRNA3,CHRNA5, CHRNB4, PSMA4, LOC123688	HYKK			123688			rs8034191-C	rs8034191	0	8034191	intron	0	0.34	5E-20	19.30102999566398	 	   1.30	[1.23-1.37] 	Illumina[310,023]	N
11/25/2008	18385739	Thorgeirsson TE	04/03/2008	Nature	http://www.ncbi.nlm.nih.gov/pubmed/18385739?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A variant associated with nicotine dependence, lung cancer and peripheral arterial disease.	Nicotine dependence	10,995 European ancestry individuals	4,848 European ancestry individuals	15q25.1	15	78601997	CHRNA3,CHRNA5,CHRNB4	CHRNA3			1136			rs1051730-T	rs1051730	0	1051730	STOP-GAIN	0	0.35	6E-20	19.22184874961636	 	    .10	[0.08-0.12] increase in cigarettes per day	Illumina[306,207]	N
11/25/2008	18372901	Tenesa A	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372901?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.	Colorectal cancer	981 European ancestry cases, 1,002 European ancestry controls	10,287 European ancestry cases, 10,401 European ancestry controls, 4,400 Japanese ancestry cases, 3,179 Japanese ancestry controls, 1,789 Other ancestry cases, 1,771 Other ancestry controls	8q24.21	8	127412547	POU5FIP1, HsG57825, DQ515897	LOC101930033			101930033			rs7014346-A	rs7014346	0	7014346	intron	0	0.18	9E-26	25.04575749056067		   1.19	[1.15-1.23] 	Illumina[541,628]	N
11/25/2008	18372901	Tenesa A	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372901?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.	Colorectal cancer	981 European ancestry cases, 1,002 European ancestry controls	10,287 European ancestry cases, 10,401 European ancestry controls, 4,400 Japanese ancestry cases, 3,179 Japanese ancestry controls, 1,789 Other ancestry cases, 1,771 Other ancestry controls	11q23.1	11	111300984	Intergenic	COLCA2;COLCA1			120376;399948			rs3802842-C	rs3802842	0	3802842	intron;nearGene-5	0	0.43	6E-10	9.221848749616356	 	   1.11	[1.08-1.15] 	Illumina[541,628]	N
11/25/2008	18372901	Tenesa A	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372901?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.	Colorectal cancer	981 European ancestry cases, 1,002 European ancestry controls	10,287 European ancestry cases, 10,401 European ancestry controls, 4,400 Japanese ancestry cases, 3,179 Japanese ancestry controls, 1,789 Other ancestry cases, 1,771 Other ancestry controls	18q21.1	18	48927093	SMAD7	SMAD7			4092			rs4939827-T	rs4939827	0	4939827	intron	0	0.52	8E-28	27.09691001300805		   1.20	[1.16-1.24] 	Illumina[541,628]	N
11/25/2008	18372905	Tomlinson IP	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372905?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 Other ancestry cases, 664 Other ancestry controls	10p14	10	8659256	Intergenic	RNA5SP299 - LINC00709	100873574	100507163		        2.43	      616.36	rs10795668-A	rs10795668	0	10795668	Intergenic	1	0.67	3E-13	12.52287874528034	 	   1.12	[1.10-1.16] 	Illumina[547,647]	N
11/25/2008	18372905	Tomlinson IP	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372905?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 Other ancestry cases, 664 Other ancestry controls	8q23.3	8	116618444	EIF3H	LINC00536 - EIF3H	100859921	8667		      293.39	       26.37	rs16892766-A	rs16892766	0	16892766	Intergenic	1	0.07	3E-18	17.52287874528034	 	   1.27	[1.20-1.34] 	Illumina[547,647]	N
11/25/2008	18372905	Tomlinson IP	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372905?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 Other ancestry cases, 664 Other ancestry controls	8q24.21	8	127401060	Intergenic	CCAT2;LOC101930033			101805488;101930033			rs6983267-?	rs6983267	0	6983267	ncRNA;intron	0	0.48	7E-11	10.15490195998574	 	   1.24	[1.17-1.33] 	Illumina[547,647]	N
11/25/2008	18372905	Tomlinson IP	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372905?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 Other ancestry cases, 664 Other ancestry controls	18q21.1	18	48927093	SMAD7	SMAD7			4092			rs4939827-?	rs4939827	0	4939827	intron	0	0.53	2E-6	5.698970004336018	 	   1.18	[1.10-1.25] 	Illumina[547,647]	N
11/25/2008	18372905	Tomlinson IP	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372905?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 Other ancestry cases, 664 Other ancestry controls	15q13.3	15	32702555	Intergenic	SCG5 - GREM1	6447	26585		        5.46	       15.42	rs4779584-?	rs4779584	0	4779584	Intergenic	1	0.19	5E-7	6.30102999566398	 	   1.23	[1.14-1.34] 	Illumina[547,647]	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	7p15.1	7	28140937	JAZF1	JAZF1			221895			rs864745-T	rs864745	0	864745	intron	0	0.50	5E-14	13.30102999566398	 	   1.10	[1.07-1.13] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	10p13	10	12286011	CDC123,CAMK1D	CDC123 - CAMK1D	8872	57118		       35.42	       63.50	rs12779790-G	rs12779790	0	12779790	Intergenic	1	0.18	1E-10	10	 	   1.11	[1.07-1.14] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	12q21.1	12	71269322	TSPAN8,LGR5	TSPAN8 - LGR5	7103	8549		      111.32	      169.83	rs7961581-C	rs7961581	0	7961581	Intergenic	1	0.27	1E-9	8.999999999999998	 	   1.09	[1.06-1.12] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	2p21	2	43505684	THADA	THADA			63892			rs7578597-T	rs7578597	0	7578597	missense	0	0.90	1E-9	8.999999999999998	 	   1.15	[1.10-1.20] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	3p14.1	3	64726228	ADAMTS9	ADAMTS9-AS2			100507098			rs4607103-C	rs4607103	0	4607103	intron	0	0.76	1E-8	8	 	   1.09	[1.06-1.12] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	1p12	1	119975336	NOTCH2, ADAM30	NOTCH2			4853			rs10923931-T	rs10923931	0	10923931	intron	0	0.11	4E-8	7.397940008672037	 	   1.13	[1.08-1.17] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	12q13.2	12	54705212	DCD	DCD - VDAC1P5	117159	10187		       56.72	       96.67	rs1153188-A	rs1153188	0	1153188	Intergenic	1	0.73	2E-7	6.698970004336019	 	   1.08	[1.05-1.11] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	6p21.1	6	43844025	VEGFA	TRNAI25			100189401			rs9472138-T	rs9472138	0	9472138		0	0.28	4E-6	5.397940008672037	 	   1.06	[1.04-1.09] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	3p25.2	3	12236345	SYN2, PPARG	TIMP4 - GSTM5P1	7079	100505557		       76.99	       21.03	rs17036101-G	rs17036101	0	17036101	Intergenic	1	0.93	2E-7	6.698970004336019	 	   1.15	[1.10-1.21] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	3q27.2	3	185793899	IGF2BP2	IGF2BP2			10644			rs4402960-T	rs4402960	0	4402960	intron	0	NR	8E-8	7.096910013008055	 	   1.17	[1.10-1.25] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	6p22.3	6	20703721	CDKAL1	CDKAL1			54901			rs6931514-G	rs6931514	0	6931514	intron	0	NR	1E-11	11	 	   1.25	[1.17-1.33] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	9p21.3	9	22129580	CDKN2A,CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      117.04	      317.26	rs7020996-C	rs7020996	0	7020996	Intergenic	1	NR	2E-7	6.698970004336019	 	   1.26	[1.15-1.38] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	10q23.33	10	92705802	HHEX	HHEX - EXOC6	3087	54536		       10.15	      121.03	rs5015480-C	rs5015480	0	5015480	Intergenic	1	NR	7E-8	7.154901959985742	 	   1.17	[1.11-1.24] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	11p15.1	11	17387083	KCNJ11	KCNJ11			3767			rs5215-C	rs5215	0	5215	missense	0	NR	4E-7	6.397940008672037	 	   1.16	[1.09-1.23] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	NR	3E-23	22.52287874528034	 	   1.37	[1.28-1.47] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18372903	Zeggini E	03/30/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18372903?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	NR	7E-6	5.154901959985742	 	   1.15	[1.09-1.22] 	Affymetrix and Illumina[2,202,892](imputed)	N
11/25/2008	18360741	Butcher LM	03/25/2008	Behav Genet	http://www.ncbi.nlm.nih.gov/pubmed/18360741?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	The nature of nurture: a genomewide association scan for family chaos.	Environmental confusion in the home	469 European ancestry children from low chaos families, 369 European ancestry children from high chaos families	3,529 European ancestry children	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[117,062] (pooled)	N
11/25/2008	18364390	Capon F	03/25/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/18364390?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	20q13.13	20	49905793	SPATA2	SPATA2			9825			rs495337-?	rs495337	0	495337	cds-synon	0	NR	1E-8	8	 	   1.25	[1.12-1.39] 	Illumina[~408,000] (pooled)	N
11/25/2008	18364390	Capon F	03/25/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/18364390?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	6p21.33	6	31344549	HLA-C	TRNAI25			100189401			rs3134792-?	rs3134792	0	3134792		0	NR	1E-9	8.999999999999998	 	NR	NR	Illumina[~408,000] (pooled)	N
11/25/2008	18347602	Sullivan PF	03/18/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18347602?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 cases of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry, 103 controls of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry	NA	15q25.3	15	86441009	AGBL1	AGBL1			123624			rs16977195-?	rs16977195	0	16977195	intron	0	0.03	2E-6	5.698970004336018	 	   6.01	[NR] 	Affymetrix[492,900]	N
11/25/2008	18347602	Sullivan PF	03/18/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18347602?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 cases of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry, 103 controls of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry	NA	1q31.1	1	186663185	Intergenic	PDC - PTGS2	5132	5743		      202.08	        8.63	rs10911902-?	rs10911902	0	10911902	Intergenic	1	0.17	2E-6	5.698970004336018	 	   1.79	[NR] 	Affymetrix[492,900]	N
11/25/2008	18347602	Sullivan PF	03/18/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18347602?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 cases of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry, 103 controls of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry	NA	1p36.22	1	11728507	Intergenic	DRAXIN - AGTRAP	374946	57085		        8.23	        7.58	rs4846033-?	rs4846033	0	4846033	Intergenic	1	0.01	4E-6	5.397940008672037	 	   2.87	[NR] 	Affymetrix[492,900]	N
11/25/2008	18347602	Sullivan PF	03/18/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18347602?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 cases of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry, 103 controls of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry	NA	13q12.2	13	27503007	Intergenic	RNU6-63P - LNX2	100873768	222484		       14.78	       42.90	rs9512730-?	rs9512730	0	9512730	Intergenic	1	0.26	5E-6	5.301029995663981	 	   1.52	[NR] 	Affymetrix[492,900]	N
11/25/2008	18347602	Sullivan PF	03/18/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18347602?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 cases of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry, 103 controls of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry	NA	16p12.3	16	20663170	ACSM1, BUCS1	ACSM1			116285			rs151222-?	rs151222	0	151222	intron	0	0.08	6E-6	5.221848749616356	 	   2.10	[NR] 	Affymetrix[492,900]	N
11/25/2008	18347602	Sullivan PF	03/18/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18347602?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 cases of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry, 103 controls of American Indian, Asian unspecified, Pacific Islander, or Hispanic/Latino ancestry	NA	Xq28	23	148299501	Intergenic	FTH1P8 - RPL7L1P11	2501	347509		      246.58	      165.18	rs2159767-?	rs2159767	0	2159767	Intergenic	1	0.62	7E-6	5.154901959985742	 	   1.33	[NR] 	Affymetrix[492,900]	N
11/25/2008	18326623	Gold B	03/11/2008	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/18326623	Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33.	Breast cancer	249 Ashkenazi Jewish ancestry non-BRCA1/2 carriers cases, 299 Ashkenazi Jewish ancestry non-BRCA1/2 carriers controls	1,193 Ashkenazi Jewish ancestry non-BRCA1/2 carriers  cases,1,166 Ashkenazi Jewish ancestry non-BRCA1/2 carriers controls	6q22.33	6	127279485	ECHDC1,RNF146	RNF146			81847			rs2180341-G	rs2180341	0	2180341	intron	0	0.21	3E-8	7.522878745280337	 	   1.41	[1.25-1.59] 	Affymetrix[150,080]	N
11/25/2008	18332876	Kirov G	03/11/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18332876?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study in 574 schizophrenia trios using DNA pooling.	Schizophrenia	574 European ancestry trios, 605 European ancestry controls	NA	12q24.23	12	119380704	CCDC60	CCDC60			160777			rs11064768-A	rs11064768	0	11064768	intron	0	0.91	1E-6	5.999999999999999	 	NR	NR	Illumina[~550,000](pooled)	N
11/25/2008	18327256	Doring A	03/09/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18327256?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	SLC2A9 influences uric acid concentrations with pronounced sex-specific effects.	Urate levels	1,644 European ancestry individuals	9,947 European ancestry individuals	4p16.1	4	9964756	SLC2A9	SLC2A9			56606			rs7442295-C	rs7442295	0	7442295	intron	0	0.40	3E-70	69.52287874528032	 	    .35	[NR] mg/dl decrease in uric acid	Affymetrix[335,152]	N
11/25/2008	18327257	Vitart V	03/09/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18327257?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	SLC2A9 is a newly identified urate transporter influencing serum urate concentration, urate excretion and gout.	Urate levels	794 European ancestry individuals	706 European ancestry individuals	4p16.1	4	9933120	SLC2A9	SLC2A9			56606			rs737267-C	rs737267	0	737267	intron	0	0.31	3E-9	8.522878745280337	 	    .88	[NR] uM decrease in uric acid [females only]	Illumina[308,140]	N
11/25/2008	18325910	Liu YJ	03/05/2008	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/18325910?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scans identified CTNNBL1 as a novel gene for obesity.	Obesity	1,000 European ancestry individuals	896 European ancestry cases, 2,916 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[379,319]	N
11/25/2008	18317468	Sklar P	03/04/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18317468?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole-genome association study of bipolar disorder.	Bipolar disorder	1,461 European ancestry cases, 2,008 European ancestry controls	409 European ancestry trios from 256 families, 365 European ancestry cases, 351 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[372,193]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	1q31.2	1	192567683	RGS1	RGS21 - RGS1	431704	5996		      200.40	        8.04	rs2816316-C	rs2816316	0	2816316	Intergenic	1	NR	3E-11	10.52287874528034	 	   1.39	[1.26-1.53] 	Illumina[310,605]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	2q12.1	2	102355405	IL1RL1,IL18R1,IL18RAP, SLC9A4	IL18R1			8809			rs13015714-C	rs13015714	0	13015714	nearGene-5	0	NR	4E-9	8.397940008672036	 	   1.28	[1.18-1.39] 	Illumina[310,605]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	3q25.33	3	159947262	IL12A, SCHIP1	IL12A-AS1			101928376			rs17810546-G	rs17810546	0	17810546	intron	0	NR	1E-9	8.999999999999998	 	   1.35	[1.23-1.49] 	Illumina[310,605]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	3q28	3	188394766	LPP	LPP			4026			rs1464510-A	rs1464510	0	1464510	intron	0	NR	5E-9	8.301029995663981	 	   1.23	[1.15-1.32] 	Illumina[310,605]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	6q25.3	6	159044945	TAGAP	TAGAP			117289			rs1738074-A	rs1738074	0	1738074	UTR-5	0	NR	7E-8	7.154901959985742	 	   1.21	[1.13-1.30] 	Illumina[310,605]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	3p21.31	3	46310893	CCR1, CCR3	UQCRC2P1			100131327			rs6441961-A	rs6441961	0	6441961		0	0.30	3E-7	6.522878745280337	 	   1.21	[1.13-1.30] 	Illumina[310,605]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	12q24.12	12	111569952	SH2B3, ATXN2	ATXN2			6311			rs653178-G	rs653178	0	653178	intron	0	0.48	8E-8	7.096910013008055	 	   1.21	[1.13-1.30] 	Illumina[310,605]	N
11/25/2008	18311140	Hunt KA	03/02/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18311140?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	4q27	4	122588266	KIAA1109, ADAD1, IL2, IL21	IL2 - IL21	3558	59067		      131.77	       24.36	rs6822844-C	rs6822844	0	6822844	Intergenic	1	0.81	3E-13	12.52287874528034	 	   1.44	[1.30-1.58] 	Illumina[310,605]	N
11/25/2008	18316681	Uhl GR	03/01/2008	Arch Gen Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18316681?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association for methamphetamine dependence: convergent results from 2 samples.	Methamphetamine dependence	240 East Asian ancestry cases, 340 East Asian ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[up to 466,883](pooled)	N
11/25/2008	18313986	Blauw HM	02/29/2008	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/18313986?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Copy-number variation in sporadic amyotrophic lateral sclerosis: a genome-wide screen.	Amyotrophic lateral sclerosis	406 cases,404 controls	NR	Pending			Pending	 - 						Pending	Pending					Pending	Pending		Pending	Pending	Pending	Illumina[317,503]	Y
11/25/2008	18282107	Shifman S	02/15/2008	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/18282107?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association identifies a common variant in the reelin gene that increases the risk of schizophrenia only in women.	Schizophrenia	660 Ashkenazi Jewish cases, 2,271 Ashkenazi Jewish controls	1,859 European ancestry cases, 3,943 European ancestry controls, 759 Ashkenazi Jewish cases, 3,389 Ashkenazi Jewish controls, 415 Han Chinese ancestry cases, 458 Han Chinese ancestry controls	7q22.1	7	103764368	RELN	RELN			5649			rs7341475-G	rs7341475	0	7341475	intron	0	0.62	9E-7	6.045757490560675	 	   1.58	[1.31-1.89] 	Affymetrix [510,552]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	10q11.23	10	46046326	MSMB	MSMB			4477			rs10993994-T	rs10993994	0	10993994	nearGene-5	0	0.40	9E-29	28.04575749056067	 	   1.25	[1.17-1.34] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	19q13.33	19	50861367	KLK3	KLK3 - KLK2	354	3817		         .60	       12.07	rs2735839-G	rs2735839	0	2735839	Intergenic	1	0.85	2E-18	17.69897000433602	 	   1.20	[1.10-1.33] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	11q13.3	11	69227030	Intergenic	MIR3164 - MYEOV	100422846	26579		      143.77	       67.13	rs7931342-G	rs7931342	0	7931342	Intergenic	1	0.51	2E-12	11.69897000433602	 	   1.19	[1.11-1.27] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	6q25.3	6	160412632	SLC22A3	SLC22A3			6581			rs9364554-T	rs9364554	0	9364554	intron	0	0.29	6E-10	9.221848749616356	 	   1.17	[1.08-1.26] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	7q21.3	7	98187015	LMTK2	LMTK2			22853			rs6465657-C	rs6465657	0	6465657	intron	0	0.46	1E-9	8.999999999999998	 	   1.12	[1.05-1.20] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	3p12.1	3	87061524	Intergenic	PPATP1 - LINC00506	100289640	100846978		        8.79	       27.76	rs2660753-T	rs2660753	0	2660753	Intergenic	1	0.11	3E-8	7.522878745280337		   1.18	[1.06-1.31] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	Xp11.22	23	51498820	NUDT10, NUDT11	NUDT11 - CENPVP3	55190	347549		        2.21	      119.28	rs5945619-C	rs5945619	0	5945619	Intergenic	1	0.36	2E-9	8.698970004336019		   1.19	[1.07-1.31] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	8q24.21	8	127401060	Intergenic	CCAT2;LOC101930033			101805488;101930033			rs6983267-G	rs6983267	0	6983267	ncRNA;intron	0	0.49	9E-13	12.04575749056067	 	   1.42	[NR] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	8q24.21	8	127081052	Intergenic	PRNCR1			101867536			rs1016343-T	rs1016343	0	1016343	ncRNA	0	0.18	1E-7	7	 	   1.37	[NR] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	8q24.21	8	127506309	Intergenic	CASC8 - CASC11	727677	100270680		       24.17	      224.02	rs4242384-C	rs4242384	0	4242384	Intergenic	1	0.09	3E-16	15.52287874528034	 	   1.88	[NR] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	17q12	17	37741165	HNF1B	HNF1B			6928			rs7501939-C	rs7501939	0	7501939	intron	0	0.57	9E-12	11.04575749056067	 	   1.41	[NR] 	Illumina [541,129]	N
11/25/2008	18264097	Eeles RA	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264097?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	17q24.3	17	71112612	Intergenic	CASC17			101928165			rs1859962-G	rs1859962	0	1859962	intron	0	0.46	1E-6	5.999999999999999	 	   1.26	[NR] 	Illumina [541,129]	N
11/25/2008	18264098	Gudmundsson J	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264098?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common sequence variants on 2p15 and Xp11.22 confer susceptibility to prostate cancer.	Prostate cancer	1,854 European ancestry cases, 21,372 European ancestry controls	8,239 European ancestry cases, 7,590 European ancestry controls	Xp11.22	23	51486831	NUDT10, NUDT11, LOC340602	CXorf67 - NUDT11	340602	55190		       77.99	        3.18	rs5945572-A	rs5945572	0	5945572	Intergenic	1	0.35	4E-13	12.39794000867204		   1.23	[1.16-1.30] 	Illumina[310,520]	N
11/25/2008	18264098	Gudmundsson J	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264098?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common sequence variants on 2p15 and Xp11.22 confer susceptibility to prostate cancer.	Prostate cancer	1,854 European ancestry cases, 21,372 European ancestry controls	8,239 European ancestry cases, 7,590 European ancestry controls	2p15	2	62904596	EHBP1	EHBP1			23301			rs721048-A	rs721048	0	721048	intron	0	0.19	8E-9	8.096910013008056	 	   1.15	[1.10-1.21] 	Illumina[310,520]	N
11/25/2008	18264096	Thomas G	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264096?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	10q11.23	10	46046326	MSMB	MSMB			4477			rs10993994-T	rs10993994	0	10993994	nearGene-5	0	0.40	7E-13	12.15490195998574	 	   1.16	[1.04-1.29] 	Illumina[527,869]	N
11/25/2008	18264096	Thomas G	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264096?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	10q26.13	10	125008303	CTBP2	CTBP2			1488			rs4962416-C	rs4962416	0	4962416	intron	0	0.27	2E-7	6.698970004336019	 	   1.17	[1.05-1.30] 	Illumina[527,869]	N
11/25/2008	18264096	Thomas G	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264096?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	11q13.3	11	69227200	Intergenic	MIR3164 - MYEOV	100422846	26579		      143.94	       66.96	rs10896449-G	rs10896449	0	10896449	Intergenic	1	0.52	2E-9	8.698970004336019	 	   1.10	[0.98-1.23] 	Illumina[527,869]	N
11/25/2008	18264096	Thomas G	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264096?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	7p15.2	7	27936944	JAZF1	JAZF1			221895			rs10486567-G	rs10486567	0	10486567	intron	0	0.77	2E-6	5.698970004336018	 	   1.12	[1.02-1.25] 	Illumina[527,869]	N
11/25/2008	18264096	Thomas G	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264096?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	8q24.21	8	127401060	Intergenic	CCAT2;LOC101930033			101805488;101930033			rs6983267-G	rs6983267	0	6983267	ncRNA;intron	0	0.53	7E-12	11.15490195998574	 	   1.28	[1.15-1.45] 	Illumina[527,869]	N
11/25/2008	18264096	Thomas G	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264096?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	8q24.21	8	127505328	Intergenic	CASC8 - CASC11	727677	100270680		       23.19	      225.00	rs4242382-A	rs4242382	0	4242382	Intergenic	1	0.12	3E-19	18.52287874528033		   1.66	[1.47-1.87] 	Illumina[527,869]	N
11/25/2008	18264096	Thomas G	02/10/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18264096?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	17q12	17	37738049	HNF1B	HNF1B			6928			rs4430796-A	rs4430796	0	4430796	intron	0	0.54	1E-9	8.999999999999998	 	   1.18	[1.04-1.32] 	Illumina[527,869]	N
11/25/2008	18262040	Sandhu MS	02/09/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18262040?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	LDL-cholesterol concentrations: a genome-wide association study.	LDL cholesterol	11,685 European ancestry individuals	Up to 4,979 European ancestry individuals	1p13.3	1	109279544	CELSR2,PSRC1	PSRC1			84722			rs599839-G	rs599839	0	599839	nearGene-3	0	0.19	1E-33	32.99999999999999	 	    .16	[0.14-0.18] mmol/L decrease	Affymetrix and Illumina [up to 461,986]	N
11/25/2008	18262040	Sandhu MS	02/09/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18262040?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	LDL-cholesterol concentrations: a genome-wide association study.	LDL cholesterol	11,685 European ancestry individuals	Up to 4,979 European ancestry individuals	19q13.32	19	44919689	APOC1	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.18	1E-20	20	 	    .06	[0.04-0.08] mmol/L increase	Affymetrix and Illumina [up to 461,986]	N
11/25/2008	18262040	Sandhu MS	02/09/2008	Lancet	http://www.ncbi.nlm.nih.gov/pubmed/18262040?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	LDL-cholesterol concentrations: a genome-wide association study.	LDL cholesterol	11,685 European ancestry individuals	Up to 4,979 European ancestry individuals	2p24.1	2	21065449	APOB	APOB - TDRD15	338	100129278		       21.38	       62.15	rs562338-T	rs562338	0	562338	Intergenic	1	0.20	1E-9	8.999999999999998	 	    .04	[0.02-0.06] mmol/L decrease	Affymetrix and Illumina [up to 461,986]	N
11/25/2008	18245381	Uda M	02/05/2008	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/18245381?rdinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of beta-thalassemia.	Fetal hemoglobin levels	4,305 European ancestry individuals	521 European ancestry individuals	11p15.4	11	5285279	HBB	LCRB			387281			rs4910742-A	rs4910742	0	4910742		0	0.93	1E-21	21		    .58	[NR] s.d. decrease in HbF	Affymetrix [362,129]	N
11/25/2008	18245381	Uda M	02/05/2008	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/18245381?rdinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of beta-thalassemia.	Fetal hemoglobin levels	4,305 European ancestry individuals	521 European ancestry individuals	2p16.1	2	60493111	BCL11A	BCL11A			53335			rs11886868-T	rs11886868	0	11886868	intron	0	0.80	7E-35	34.15490195998574		    .48	[NR] s.d. decrease in HbF	Affymetrix [362,129]	N
11/25/2008	18239089	Kong A	02/02/2008	Science	http://www.ncbi.nlm.nih.gov/pubmed/18239089?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the RNF212 gene associate with genome-wide recombination rate.	Recombination rate (females)	1,702 women	1,663 women	4p16.3	4	1084399	RNF212,SPON2	RNF212			285498			rs1670533-C	rs1670533	0	1670533	intron	0	0.23 (men and women combined)	2E-12	11.69897000433602	 	  88.20	[63.7-112.7] cM increase	Illumina[309,241]	N
11/25/2008	18239089	Kong A	02/02/2008	Science	http://www.ncbi.nlm.nih.gov/pubmed/18239089?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the RNF212 gene associate with genome-wide recombination rate.	Recombination rate (males)	1,887 males	1,248 males	4p16.3	4	1101493	RNF212,SPON2	RNF212			285498			rs3796619-T	rs3796619	0	3796619	intron	0	0.33 (men and women combined)	3E-24	23.52287874528033		  70.70	[57.1-84.3] cM  decrease	Illumina [309,241]	N
12/11/2008	18227835	Berrettini W	01/29/2008	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/18227835?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum	Alpha-5/alpha-3 nicotinic receptor subunit alleles increase risk for heavy smoking.	Nicotine dependence	7,481 European ancestry individuals	~2000 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[460,959]	N
11/25/2008	18252221	Kayser M	01/24/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18252221?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Three genome-wide association studies and a linkage analysis identify HERC2 as a human iris color gene.	Iris color	925 Erasmus Ruchpen individuals, 481 European ancestry women	5,575 European ancestry individuals, 1,292 Erasmus Ruchpen individuals	15q13.1	15	28268218	HERC2	HERC2			8924			rs916977-?	rs916977	0	916977	intron	0	NR	1E-43	43	 	NR	NR	Affymetrix and Illumina[up to ~500,000](pooled)	N
11/25/2008	18067574	Butcher LM	01/22/2008	Genes Brain Behav	http://www.ncbi.nlm.nih.gov/pubmed/18067574?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide quantitative trait locus association scan of general cognitive ability using pooled DNA and 500K single nucleotide polymorphism microarrays.	General cognitive ability	458 European ancestry low General cognitive ability children, 402 European ancestry high General codnitive ability children 	3,195 European ancestry children 	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[449,127](pooled)	N
11/25/2008	18204446	Harley JB	01/20/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18204446?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	16p11.2	16	31301932	ITGAM	ITGAM			3684			rs9888739-T	rs9888739	0	9888739	intron	0	0.13	2E-23	22.69897000433602	 	   1.62	[1.47-1.78] 	Illumina [317,501]	N
11/25/2008	18204446	Harley JB	01/20/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18204446?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	11p15.5	11	589564	KIAA1542	PHRF1			57661			rs4963128-?	rs4963128	0	4963128	intron	0	0.34	3E-10	9.522878745280336	 	   1.28	[1.18-1.37] 	Illumina [317,501]	N
11/25/2008	18204446	Harley JB	01/20/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18204446?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	3p14.3	3	58384450	PXK	PXK			54899			rs6445975-C	rs6445975	0	6445975	intron	0	0.28	7E-9	8.154901959985743	 	   1.25	[1.16-1.35] 	Illumina [317,501]	N
11/25/2008	18204446	Harley JB	01/20/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18204446?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	1q25.1	1	173340574	Intergenic	LOC100506023			100506023			rs10798269-?	rs10798269	0	10798269	intron	0	0.64	1E-7	7	 	   1.22	[1.14-1.32] 	Illumina [317,501]	N
11/25/2008	18204446	Harley JB	01/20/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18204446?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	7q32.1	7	129077852	IRF5, TNPO3	TPI1P2 - CYCSP20	286016	349158		       20.61	       39.66	rs12537284-A	rs12537284	0	12537284	Intergenic	1	0.13	4E-19	18.39794000867203	 	   1.54	[1.40-1.70] 	Illumina [317,501]	N
11/25/2008	18204446	Harley JB	01/20/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18204446?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	6p21.33	6	31753256	HLA region	MSH5;MSH5-SAPCD1			4439;100532732			rs3131379-A	rs3131379	0	3131379	intron;intron	0	0.1	2E-52	51.69897000433601	 	   2.36	[2.11-2.64] 	Illumina [317,501]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	8p23.1	8	11491677	C8orf13, BLK	FAM167A - BLK	83648	640		       24.91	        2.34	rs13277113-A	rs13277113	0	13277113	Intergenic	1	0.23	1E-10	10	 	   1.39	[1.28-1.51] 	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	16p11.2	16	31357553	ITGAM, ITGAX	ITGAX			3687			rs11574637-C	rs11574637	0	11574637	intron	0	0.19	3E-11	10.52287874528034	 	   1.33	[1.22-1.46] 	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	9q34.13	9	132221380	NTNG2	NTNG2			84628			rs11243676-A	rs11243676	0	11243676	intron	0	0.07	3E-6	5.522878745280337	 	NR	NR	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	5p13.1	5	42375141	GHR	LOC102723768			102723768			rs979233-T	rs979233	0	979233	nearGene-5	0	0.46	4E-6	5.397940008672037	 	NR	NR	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	18q22.3	18	71175007	SOCS6	GTSCR1 - CBLN2	220158	147381		      524.15	     1361.67	rs17083844-A	rs17083844	0	17083844	Intergenic	1	0.03	6E-6	5.221848749616356	 	NR	NR	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	1p31.1	1	71808790	NEGR1	NEGR1;NEGR1-IT1			257194;100852409			rs12141391-A	rs12141391	0	12141391	intron;intron	0	0.02	7E-6	5.154901959985742		NR	NR	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	6p21.32	6	32638107	HLA-DQA1	HLA-DQA1			3117			rs2187668-A	rs2187668	0	2187668	intron	0	0.11	3E-21	20.52287874528034	 	NR	NR	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	7q32.1	7	128954129	IRF5, TNPO3	TNPO3			23534			rs10488631-C	rs10488631	0	10488631	nearGene-3	0	0.12	2E-11	10.69897000433602	 	NR	NR	Illumina[502,033]	N
11/25/2008	18204098	Hom G	01/20/2008	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/18204098?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	2q32.3	2	191099907	STAT4	STAT4			6775			rs7574865-T	rs7574865	0	7574865	intron	0	0.23	9E-14	13.04575749056067	 	NR	NR	Illumina[502,033]	N
11/25/2008	18204447	Kozyrev SV	01/20/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18204447?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Functional variants in the B-cell gene BANK1 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	279 European ancestry cases, 515 European ancestry controls	1,757 European ancestry cases, 1,540 European ancestry controls	4q24	4	101829919	BANK1	BANK1			55024			rs10516487-G	rs10516487	0	10516487	missense	0	0.77	4E-10	9.397940008672037	 	   1.38	[1.25-1.53] 	Affymetrix[85,042]	N
11/25/2008	18198356	Hakonarson H	01/15/2008	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/18198356?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A novel susceptibility locus for type 1 diabetes on Chr12q13 identified by a genome-wide association study.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	946 European ancestry cases and 1,098 European ancestry controls from 549 families, 364 European ancestry trios	12q13.2	12	56018703	RAB5B, SUOX, IKZF4, ERBB3, CDK2	IKZF4			64375			rs1701704-C	rs1701704	0	1701704	intron	0	0.35	9E-10	9.045757490560675	 	   1.25	[1.12-1.40] 	Illumina[543,071]	N
11/25/2008	18195134	Byun E	01/14/2008	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/18195134?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide pharmacogenomic analysis of the response to interferon beta therapy in multiple sclerosis.	Response to interferon beta therapy	99 European ancestry responders, 107 European ancestry non-responders	81 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[~100,000](pooled)	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 individuals	18,544 individuals	1q42.13	1	230159944	GALNT2	GALNT2			2590			rs4846914-G	rs4846914	0	4846914	intron	0	0.40	2E-13	12.69897000433602		    .07	[0.05-0.09] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 individuals	18,544 individuals	9q31.1	9	104885374	ABCA1	ABCA1			19			rs3890182-A	rs3890182	0	3890182	intron	0	0.13	3E-10	9.522878745280336	 	    .10	[0.06-0.14] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 individuals	18,544 individuals	16q13	16	56961324	CETP	CETP			1071			rs1800775-C	rs1800775	0	1800775	nearGene-5	0	0.51	1E-73	73	 	    .18	[0.16-0.20] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 individuals	18,544 individuals	15q21.3	15	58431476	LIPC	LIPC;LOC102724766			3990;102724766			rs1800588-T	rs1800588	0	1800588	intron;nearGene-5	0	0.21	2E-32	31.69897000433602	 	    .14	[0.12-0.16] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 individuals	18,544 individuals	18q21.1	18	49655298	LIPG, ACAA2	SMUG1P1 - ACAA2	100129143	10449		        4.14	      128.21	rs2156552-A	rs2156552	0	2156552	Intergenic	1	0.18	2E-7	6.698970004336019	 	    .07	[0.05-0.09] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 individuals	18,544 individuals	8p21.3	8	19962213	LPL	LPL			4023			rs328-G	rs328	0	328	STOP-GAIN	0	0.09	9E-23	22.04575749056067	 	    .17	[0.13-0.21] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	1p13.3	1	109275908	CELSR2,PSRC1,SORT1	CELSR2			1952			rs646776-C	rs646776	0	646776	nearGene-3	0	0.24	3E-29	28.52287874528033	 	    .16	[0.14-0.18] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	19p13.11	19	19547663	CILP2, PBX4	CILP2 - PBX4	148113	80714		        1.00	       14.04	rs16996148-T	rs16996148	0	16996148	Intergenic	1	0.10	3E-8	7.522878745280337		    .10	[0.06-0.14] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	2p24.1	2	21009323	APOB	APOB			338			rs693-A	rs693	0	693	cds-synon	0	0.48	1E-21	21	 	    .12	[0.10-0.14] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	19q13.32	19	44919689	APOE, APOC1, APOC4, APOC2	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.20	1E-60	59.99999999999999	 	    .19	[0.15-0.23] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	5q13.3	5	75352778	HMGCR	HMGCR			3156			rs12654264-T	rs12654264	0	12654264	intron	0	0.39	1E-20	20	 	    .10	[0.08-0.12] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-T	rs6511720	0	6511720	intron	0	0.10	2E-51	50.69897000433601		    .26	[0.22-0.30] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	1p32.3	1	55039974	PCSK9	PCSK9			255738			rs11591147-T	rs11591147	0	11591147	missense	0	0.01	2E-44	43.69897000433602	 	    .47	[0.41-0.53] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	7q11.23	7	73568544	BCL7B, TBL2, MLXIPL	TBL2			26608			rs17145738-T	rs17145738	0	17145738	nearGene-3	0	0.13	7E-22	21.15490195998574	 	    .14	[0.25-0.53] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	8q24.13	8	125474167	TRIB1	TRIB1 - LINC00861	10221	100130231		       35.76	      448.36	rs17321515-G	rs17321515	0	17321515	Intergenic	1	0.49	4E-17	16.39794000867203		    .08	[0.06-0.10] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	1q42.13	1	230159944	GALNT2	GALNT2			2590			rs4846914-G	rs4846914	0	4846914	intron	0	0.40	7E-15	14.15490195998574	 	    .08	[0.06-0.10] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	19p13.11	19	19547663	CILP2, PBX4	CILP2 - PBX4	148113	80714		        1.00	       14.04	rs16996148-T	rs16996148	0	16996148	Intergenic	1	0.10	4E-9	8.397940008672036		    .10	[0.06-0.14] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	1p31.3	1	62726106	ANGPTL3, DOCK7, ATG4C	RPL13AP9 - ATG4C	100271137	84938		       84.41	       58.00	rs12130333-T	rs12130333	0	12130333	Intergenic	1	0.22	2E-8	7.698970004336018		    .11	[0.07-0.15] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	11q23.3	11	116748357	APOA1, APOC3, APOA4, APOA5, ZNF259, BUD13	BUD13			84811			rs28927680-G	rs28927680	0	28927680	ncRNA	0	0.07	2E-17	16.69897000433602	 	    .26	[0.20-0.32] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	2p24.1	2	21009323	APOB	APOB			338			rs693-A	rs693	0	693	cds-synon	0	0.48	2E-7	6.698970004336019	 	    .08	 [0.04-0.12] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	0.34	3E-14	13.52287874528034	 	    .13	[0.09-0.17] % SD higher	Affymetrix[389,878]	N
11/25/2008	18193044	Kathiresan S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193044?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 individuals	18,544 individuals	8p21.3	8	19962213	LPL	LPL			4023			rs328-G	rs328	0	328	STOP-GAIN	0	0.09	2E-28	27.69897000433602	 	    .19	[0.15-0.23] % SD lower	Affymetrix[389,878]	N
11/25/2008	18193046	Kooner JS	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193046?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry males, 1,006 Indian Asian ancestry males	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry women	7q11.23	7	73606007	MLXIPL	MLXIPL			51085			rs3812316-C	rs3812316	0	3812316	missense	0	0.95	1E-10	10	 	  10.50	[5.3-17.7] % higher	Perlegen[up to 216,774]	N
11/25/2008	18193046	Kooner JS	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193046?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry males, 1,006 Indian Asian ancestry males	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry women	11q23.3	11	116736721	LOC440069, MGC13125	RPL15P15 - BUD13	100128347	84811		      785.92	       11.45	rs1558861-C	rs1558861	0	1558861	Intergenic	1	0.18	2E-26	25.69897000433602		  17.00	[13.28-20.72] % higher	Perlegen[up to 216,774]	N
11/25/2008	18193046	Kooner JS	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193046?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry males, 1,006 Indian Asian ancestry males	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry women	8p21.3	8	19961928	LPL, C8orf35, SLC18A1	LPL			4023			rs326-A	rs326	0	326	intron	0	0.78	5E-12	11.30102999566398	 	   6.60	[3.66-9.54] % higher	Perlegen[up to 216,774]	N
11/25/2008	18193046	Kooner JS	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193046?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry males, 1,006 Indian Asian ancestry males	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry women	11q23.3	11	116861796	APOA1,KIAA0999,LOC645044	SIK3			23387			rs2075292-G	rs2075292	0	2075292	intron	0	0.24	5E-8	7.30102999566398	 	   8.70	[5.76-11.64] % higher	Perlegen[up to 216,774]	N
11/25/2008	18193045	Sanna S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193045?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	20q11.22	20	35319358	BFZB	UQCC1			55245			rs6060369-C	rs6060369	0	6060369	intron	0	0.44	2E-16	15.69897000433602	 	    .44	[NR] cm taller	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193045	Sanna S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193045?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	4q12	4	54368658	PDGFRA	PDGFRA - KIT	5156	3815		       70.41	      289.27	rs17690232-C	rs17690232	0	17690232	Intergenic	1	0.80	4E-7	6.397940008672037	 	    .86	[NR] cm taller	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193045	Sanna S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193045?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	15q26.1	15	89358801	POLG	LOC100288864			100288864			rs4932217-A	rs4932217	0	4932217		0	0.58	8E-7	6.096910013008056	 	    .66	[NR] cm taller	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193045	Sanna S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193045?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	3q23	3	141386728	ZBTB38	ZBTB38			253461			rs724016-G	rs724016	0	724016	intron	0	0.36	1E-6	5.999999999999999	 	    .61	[NR] cm taller	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193045	Sanna S	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193045?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	5q14.1	5	79460955	HOMER1	HOMER1			9456			rs10078095-C	rs10078095	0	10078095	intron	0	0.22	3E-6	5.522878745280337	 	    .90	[NR] cm taller	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	12q24.11	12	109457363	MVK,MMAB	KCTD10			83892			rs2338104-G	rs2338104	0	2338104	intron	0	0.45	3E-8	7.522878745280337	 	    .48	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	18q21.1	18	49655298	LIPG	SMUG1P1 - ACAA2	100129143	10449		        4.14	      128.21	rs2156552-T	rs2156552	0	2156552	Intergenic	1	0.84	6E-12	11.22184874961635	 	   1.20	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q13	16	56959412	CETP	HERPUD1 - CETP	9709	1071		       15.53	        2.51	rs3764261-A	rs3764261	0	3764261	Intergenic	1	0.31	2E-57	56.69897000433601		   3.47	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q13	16	56963321	CETP	CETP			1071			rs1864163-G	rs1864163	0	1864163	intron	0	0.80	7E-39	38.15490195998574	 	   4.12	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q13	16	56951227	CETP	HERPUD1 - CETP	9709	1071		        7.35	       10.70	rs9989419-G	rs9989419	0	9989419	Intergenic	1	0.65	3E-31	30.52287874528034	 	   1.72	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	15q21.3	15	58382496	LIPC	LOC102724766			102724766			rs4775041-C	rs4775041	0	4775041	intron	0	0.33	3E-20	19.52287874528034		   1.38	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	8p21.3	8	19990179	LPL	LPL - RPL30P9	4023	100270981		       22.92	      123.16	rs10503669-A	rs10503669	0	10503669	Intergenic	1	0.10	4E-19	18.39794000867203	 	   2.09	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	1q42.13	1	230159169	GALNT2	GALNT2			2590			rs2144300-T	rs2144300	0	2144300	intron	0	0.60	3E-14	13.52287874528034		   1.11	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	9q31.1	9	104884939	ABCA1	ABCA1			19			rs4149268-C	rs4149268	0	4149268	intron	0	0.64	1E-10	10		    .82	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q22.1	16	67991092	LCAT	DPEP2			64174			rs255052-A	rs255052	0	255052	intron	0	0.17	1E-7	7	 	    .74	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	1p13.3	1	109279544	CELSR2,PSRC1,SORT1	PSRC1			84722			rs599839-A	rs599839	0	599839	nearGene-3	0	0.77	6E-33	32.22184874961635	 	   5.48	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	6p21.32	6	33176171	B3GALT4	COL11A2			1302			rs2254287-G	rs2254287	0	2254287	intron	0	0.38	5E-8	7.30102999566398	 	   1.91	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	19p13.2	19	11091630	LDLR	LDLR			3949			rs6511720-G	rs6511720	0	6511720	intron	0	0.90	4E-26	25.39794000867203	 	   9.17	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	1p32.3	1	55030366	PCSK9	BSND - PCSK9	7809	255738		       21.57	        9.11	rs11206510-T	rs11206510	0	11206510	Intergenic	1	0.81	4E-11	10.39794000867204	 	   3.04	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	19q13.32	19	44919689	APOE,APOC1,APOC4	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.18	3E-43	42.52287874528034		   6.61	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	2p24.1	2	21065449	APOB	APOB - TDRD15	338	100129278		       21.38	       62.15	rs562338-G	rs562338	0	562338	Intergenic	1	0.82	6E-22	21.22184874961636		   4.89	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	19p13.11	19	19547663	NCAN,CILP2	CILP2 - PBX4	148113	80714		        1.00	       14.04	rs16996148-G	rs16996148	0	16996148	Intergenic	1	0.89	3E-9	8.522878745280337	 	   3.32	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	0.39	6E-32	31.22184874961635	 	   8.59	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	8q24.13	8	125474167	TRIB1	TRIB1 - LINC00861	10221	100130231		       35.76	      448.36	rs17321515-A	rs17321515	0	17321515	Intergenic	1	0.56	7E-13	12.15490195998574	 	   6.42	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	7q11.23	7	73568544	MLXIPL	TBL2			26608			rs17145738-C	rs17145738	0	17145738	nearGene-3	0	0.84	2E-12	11.69897000433602	 	   8.21	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	1p31.3	1	62583922	ANGPTL3	DOCK7			85440			rs1748195-C	rs1748195	0	1748195	intron	0	0.70	2E-10	9.698970004336017	 	   7.12	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	19p13.11	19	19547663	NCAN,CILP2	CILP2 - PBX4	148113	80714		        1.00	       14.04	rs16996148-G	rs16996148	0	16996148	Intergenic	1	0.92	3E-9	8.522878745280337		   6.10	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	15q21.3	15	58382496	LIPC	LOC102724766			102724766			rs4775041-C	rs4775041	0	4775041	intron	0	0.33	2E-8	7.698970004336018		   3.62	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	11q23.3	11	116781491	APOA5, APOA4, APOC3, APOA1	ZPR1			8882			rs12286037-T	rs12286037	0	12286037	intron	0	0.06	1E-26	26		  25.82	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	8p21.3	8	19990179	LPL	LPL - RPL30P9	4023	100270981		       22.92	      123.16	rs10503669-C	rs10503669	0	10503669	Intergenic	1	0.90	4E-22	21.39794000867203		  11.57	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18193043	Willer CJ	01/13/2008	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18193043?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	1q42.13	1	230159169	GALNT2	GALNT2			2590			rs2144300-C	rs2144300	0	2144300	intron	0	0.40	8E-7	6.096910013008056		   4.25	[NR] mg/dl higher	Illumina and Affymetrix[~2,261,000]] (imputed)	N
11/25/2008	18179892	Wallace C	01/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18179892?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	LDL cholesterol	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families; 1,461 European ancestry twins	1p13.3	1	109279544	CELSR2,PSRC1	PSRC1			84722			rs599839-G	rs599839	0	599839	nearGene-3	0	0.24	1E-7	7	 	    .95	[0.93-0.97] 	Affymetrix[400,496]	N
11/25/2008	18179892	Wallace C	01/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18179892?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	LDL cholesterol	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families; 1,461 European ancestry twins	11q23.3	11	116781707	APOA1,APOC3,APOA5	ZPR1			8882			rs6589566-G	rs6589566	0	6589566	intron	0	0.06	3E-11	10.52287874528034	 	NR	NR	Affymetrix[400,496]	N
11/25/2008	18179892	Wallace C	01/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18179892?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	LDL cholesterol	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families; 1,461 European ancestry twins	2p23.3	2	27518370	GCKR	GCKR			2646			rs780094-T	rs780094	0	780094	intron	0	0.39	5E-7	6.30102999566398	 	NR	NR	Affymetrix[400,496]	N
11/25/2008	18179892	Wallace C	01/10/2008	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/18179892?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	Urate levels	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families; 1,461 European ancestry twins	4p16.1	4	9964756	SLC2A9,WDR1	SLC2A9			56606			rs7442295-A	rs7442295	0	7442295	intron	0	0.79	2E-15	14.69897000433602	 	    .02	[0.02-0.03] mMol/L higher	Affymetrix [400,496]	N
11/25/2008	18159244	Hinney A	12/26/2007	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/18159244?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome wide association (GWA) study for early onset extreme obesity supports the role of fat mass and obesity associated gene (FTO) variants.	Obesity (early onset extreme)	487 European ancestry cases, 442 European ancestry controls	2,269 European ancestry individuals from 644 families	16q12.2	16	53775335	FTO	FTO			79068			rs1121980-T	rs1121980	0	1121980	intron	0	0.41	1E-7	7	 	   1.66	[1.37-2.01] 	Affymetrix[440,794]	N
11/25/2008	18073375	Duggan D	12/19/2007	J Natl Cancer Inst	http://www.ncbi.nlm.nih.gov/pubmed/18073375?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two genome-wide association studies of aggressive prostate cancer implicate putative prostate tumor suppressor gene DAB2IP.	Prostate cancer	1,235 European ancestry cases, 1,599 European ancestry controls	1,032 European ancestry cases, 571 European ancestry controls, 210 African American cases, 346 African American controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina & Affymetrix[60,275]	N
11/25/2008	18084291	van Es MA	12/16/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18084291?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic variation in DPP6 is associated with susceptibility to amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	737 European ancestry cases, 721 European ancestry controls	1,030 European ancestry cases, 1,195 European ancestry controls	7q36.2	7	154513713	DPP6	DPP6			1804			rs10260404-C	rs10260404	0	10260404	intron	0	0.35	5E-8	7.30102999566398	 	   1.30	[1.18-1.43] 	Illumina[311,946]	N
11/25/2008	18084291	van Es MA	12/16/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18084291?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic variation in DPP6 is associated with susceptibility to amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	737 European ancestry cases, 721 European ancestry controls	1,030 European ancestry cases, 1,195 European ancestry controls	15q21.3	15	58454631	LIPC	LIPC;LOC101928694			3990;101928694			rs3825776-?	rs3825776	0	3825776	intron;intron	0	0.29	9E-6	5.045757490560675	 	   1.34	[1.20-1.46] 	Illumina[311,946]	N
11/25/2008	18084291	van Es MA	12/16/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/18084291?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic variation in DPP6 is associated with susceptibility to amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	737 European ancestry cases, 721 European ancestry controls	1,030 European ancestry cases, 1,195 European ancestry controls	2p24.2	2	18359378	Intergenic	KCNS3 - RDH14	3790	57665		      426.42	      195.35	rs7580332-?	rs7580332	0	7580332	Intergenic	1	0.45	9E-6	5.045757490560675	 	   1.22	[1.09-1.35] 	Illumina[311,946]	N
11/25/2008	18057069	Cronin S	12/07/2007	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/18057069?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of sporadic ALS in a homogenous Irish population.	Amyotrophic lateral sclerosis	221 Genetically Homogenous Irish cases, 211 Genetically Homogenous Irish controls	737 European ancestry cases, 721 European ancestry controls	7q36.2	7	154513713	DPP6	DPP6			1804			rs10260404-?	rs10260404	0	10260404	intron	0	0.37	3E-6	5.522878745280337	 	   1.37	[1.20-1.56] 	Illumina[497,917]	N
11/25/2008	18075462	Suzuki S	11/17/2007	Pharmacogenet Genomics	http://www.ncbi.nlm.nih.gov/pubmed/18075462?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A novel genetic marker for coronary spasm in women from a genome-wide single nucleotide polymorphism analysis.	Coronary spasm	50 Japanese ancestry female cases, 50 Japanese ancestry female controls	151 Japanese ancestry female cases, 160 Japanese ancestry female controls	14q21.1	14	38551301	Intergenic	CLEC14A - KRT8P1	161198	338017		      294.93	      175.66	rs10498345-T	rs10498345	0	10498345	Intergenic	1	0.30	9E-7	6.045757490560675	 	   2.33	[1.64-3.23] 	Affymetrix[97,552]	N
11/25/2008	17998437	Li H	11/12/2007	Arch Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17998437?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Candidate single-nucleotide polymorphisms from a genomewide association study of Alzheimer disease.	Alzheimer's disease	753 European ancestry cases, 736 European ancestry controls	418 European ancestry cases, 249 European ancestry controls	19q13.32	19	44919689	APOE, APOC1	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	NR	2E-44	43.69897000433602		NR	NR	Affymetrix[469,438]	N
11/25/2008	17997608	Li S	11/09/2007	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/17997608	The GLUT9 gene is associated with serum uric acid levels in Sardinia and Chianti cohorts.	Urate levels	4,305 Sardinian individuals	1,301 European ancestry individuals	4p16.1	4	9934286	GLUT9	SLC2A9			56606			rs6855911-A	rs6855911	0	6855911	intron	0	0.74	2E-16	15.69897000433602		    .32	[NR] mg/dl higher	Affymetrix [362,129]	N
11/25/2008	17982456	Plenge RM	11/04/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17982456?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.	Rheumatoid arthritis	397 European ancestry cases, 1,211 Other ancestry controls	1,408 Other ancestry cases, 2,426 Other ancestry controls, 875 European ancestry cases, 832 European ancestry controls	6q23.3	6	137681500	TNFAIP3, OLIG3	BTF3L4P3 - TNFAIP3	391040	7128		      137.06	      185.69	rs10499194-C	rs10499194	0	10499194	Intergenic	1	0.71	1E-9	8.999999999999998	 	   1.33	[1.15-1.52] 	Affymetrix[79,853]	N
11/25/2008	17982456	Plenge RM	11/04/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17982456?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.	Rheumatoid arthritis	397 European ancestry cases, 1,211 Other ancestry controls	1,408 Other ancestry cases, 2,426 Other ancestry controls, 875 European ancestry cases, 832 European ancestry controls	6q23.3	6	137685367	TNFAIP3, OLIG3	BTF3L4P3 - TNFAIP3	391040	7128		      140.92	      181.82	rs6920220-?	rs6920220	0	6920220	Intergenic	1	0.20	1E-7	7	 	   1.22	[NR] 	Affymetrix[79,853]	N
11/25/2008	17975299	Webster JA	11/01/2007	Neurodegener Dis	http://www.ncbi.nlm.nih.gov/pubmed/17975299?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sorl1 as an Alzheimer's disease predisposition gene?	Alzheimer's disease	664 cases, 422 controls	NA	19q13.32	19	44919689	APOE	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	NR	1E-39	38.99999999999999	 	NR	NR	Affymetrix[~502,627]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 European ancestry individuals	3,932 European ancestry individuals	12q21.33	12	88934558	KITLG	KITLG - MRPS6P4	4254	359782		      354.09	      384.74	rs12821256-C	rs12821256	0	12821256	Intergenic	1	0.14	4E-30	29.39794000867203	 	   2.32	[1.86-2.92] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 European ancestry individuals	3,932 European ancestry individuals	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-T	rs12896399	0	12896399	Intergenic	1	0.44	1E-48	47.99999999999999	 	   2.56	[2.12-3.09] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 European ancestry individuals	3,932 European ancestry individuals	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-T	rs1805007	0	1805007	missense	0	0.08	2E-13	12.69897000433602	 	   2.34	[1.69-3.24] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 European ancestry individuals	3,932 European ancestry individuals	15q13.1	15	28285036	OCA2	HERC2			8924			rs1667394-A	rs1667394	0	1667394	intron	0	0.88	6E-35	34.22184874961635	 	   4.94	[3.16-7.71] 	Illumina[317,511]	N
02/16/2009	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum+E2	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. brown eyes	2,986 individuals	3,932 individuals	15q13.1	15	28285036	OCA2	HERC2			8924			rs1667394-A	rs1667394	0	1667394	intron	0	0.88	1E-241	241	 	  29.43	[21.47-40.35] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. green eyes	2,986 individuals	3,932 individuals	14q32.12	14	92307319	SLC24A4	CPSF2 - SLC24A4	53981	123041		      143.12	       15.26	rs12896399-T	rs12896399	0	12896399	Intergenic	1	0.40	4E-38	37.39794000867204	 	   2.06	[1.76-2.42] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. green eyes	2,986 individuals	3,932 individuals	11q14.3	11	89277878	TYR	TYR			7299			rs1393350-A	rs1393350	0	1393350	intron	0	0.23	3E-12	11.52287874528034	 	   1.52	[1.28-1.81] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. green eyes	2,986 individuals	3,932 individuals	15q13.1	15	28285036	OCA2	HERC2			8924			rs1667394-A	rs1667394	0	1667394	intron	0	0.98	2E-53	52.69897000433602	 	   6.74	[4.61-9.83] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Freckles	2,986 individuals	3,932 individuals	6p25.3	6	466033	SEC5L1,IRF4	IRF4 - EXOC2	3662	55770		       54.59	       19.10	rs1540771-A	rs1540771	0	1540771	Intergenic	1	0.42	4E-18	17.39794000867204	 	   1.40	[1.26-1.57] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Freckles	2,986 individuals	3,932 individuals	11q14.3	11	89178528	TYR	TYR			7299			rs1042602-C	rs1042602	0	1042602	missense	0	0.67	2E-11	10.69897000433602	 	   1.32	[1.17-1.49] 	Illumina[317,511]	N
11/25/2008	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Freckles	2,986 individuals	3,932 individuals	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-T	rs1805007	0	1805007	missense	0	0.05	1E-96	95.99999999999999	 	   4.37	[3.56-5.37] 	Illumina[317,511]	N
02/16/2009	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum+E2	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Red vs non-red hair color	2,986 individuals	3,932 individuals	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-T	rs1805007	0	1805007	missense	0	NR	2E-142	141.698970004336	 	  12.47	[9.37-16.60] 	Illumina[317,511]	N
02/16/2009	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum+E2	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Skin sensitivity to sun	2,986 individuals	3,932 individuals	11q14.3	11	89277878	TYR	TYR			7299			rs1393350-A	rs1393350	0	1393350	intron	0	0.27	2E-6	5.698970004336018	 	   1.26	[1.11-1.43] 	Illumina[317,511]	N
02/16/2009	17952075	Sulem P	10/21/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17952075?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum+E2	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Skin sensitivity to sun	2,986 individuals	3,932 individuals	16q24.3	16	89919709	MC1R	MC1R			4157			rs1805007-T	rs1805007	0	1805007	missense	0	0.06	2E-55	54.69897000433601	 	   2.94	[2.42-3.58] 	Illumina[317,511]	N
11/25/2008	17999355	Stokowski RP	10/15/2007	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/17999355?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genomewide association study of skin pigmentation in a South Asian population.	Skin pigmentation	363 South Asian ancestry low maxL* individuals, 374 South Asian ancestry high maxL* individuals	116 South Asian ancestry low maxL* individuals, 115 South Asian ancestry high maxL* individuals	15q21.1	15	48099968	SLC24A5	RPL7AP62 - SLC24A5	644029	283652		      369.01	       21.00	rs1834640-G	rs1834640	0	1834640	Intergenic	1	0.08	1E-50	50	 	  12.50	[8.33-20.0] 	Perlegen [1,502,205] (pooled)	N
11/25/2008	17999355	Stokowski RP	10/15/2007	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/17999355?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genomewide association study of skin pigmentation in a South Asian population.	Skin pigmentation	363 South Asian ancestry low maxL* individuals, 374 South Asian ancestry high maxL* individuals	116 South Asian ancestry low maxL* individuals, 115 South Asian ancestry high maxL* individuals	11q14.3	11	89178528	TYR	TYR			7299			rs1042602-C	rs1042602	0	1042602	missense	0	0.84	4E-10	9.397940008672037	 	   4.36	[2.64-7.20] 	Perlegen [1,502,205] (pooled)	N
11/25/2008	17999355	Stokowski RP	10/15/2007	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/17999355?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genomewide association study of skin pigmentation in a South Asian population.	Skin pigmentation	363 South Asian ancestry low maxL* individuals, 374 South Asian ancestry high maxL* individuals	116 South Asian ancestry low maxL* individuals, 115 South Asian ancestry high maxL* individuals	5p13.2	5	33951588	SLC45A2	SLC45A2			51151			rs16891982-C	rs16891982	0	16891982	missense	0	0.83	3E-11	10.52287874528034	 	   4.86	[2.88-8.21] 	Perlegen [1,502,205] (pooled)	N
11/25/2008	17934461	Broderick P	10/14/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17934461?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk.	Colorectal cancer	930 European ancestry cases, 960 European ancestry controls	7,473 European ancestry cases, 5,984 European ancestry controls	18q21.1	18	48927093	SMAD7	SMAD7			4092			rs4939827-T	rs4939827	0	4939827	intron	0	0.52	1E-12	12	 	   1.16	[1.09-1.27] 	Illumina[547,647]	N
11/25/2008	17911428	Cervino AC	10/08/2007	Ann N Y Acad Sci	http://www.ncbi.nlm.nih.gov/pubmed/17911428?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide study of lupus: preliminary analysis and data release.	Lupus	51 cases,114 controls	NR	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[241,701]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	1	159308461	FCER1A,OR10J3	FCER1A			2205			rs2494250-?	rs2494250	0	2494250	nearGene-3	0	NR	1E-14	14	(MCP1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	1	159436169	OR10J1	OR10J1			26476			rs4128725-?	rs4128725	0	4128725	intron	0	NR	4E-12	11.39794000867204	(MCP1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	1	159709026	CRP	CRPP1 - CRP	171422	1401		        3.43	        3.26	rs2794520-?	rs2794520	0	2794520	Intergenic	1	NR	3E-8	7.522878745280337	(CRP average 2,6,7)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1p31.1	1	83788868	Intergenic	LOC101927587			101927587			rs7552393-?	rs7552393	0	7552393	intron	0	NR	5E-7	6.30102999566398	(TNFA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	19q12	19	30608983	ZNF536	ZNF536			9745			rs746961-?	rs746961	0	746961	intron	0	NR	8E-7	6.096910013008056	(CRP6)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	4q31.1	4	140466284	CLGN, ELMOD2	LOC152586			152586			rs17532515-?	rs17532515	1	1594468	intron	0	NR	1E-6	5.999999999999999	(Bilirubin)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	9q21.32	9	82800066	Intergenic	RPS6P12 - RASEF	100270867	158158		       55.27	      179.52	rs1998303-?	rs1998303	0	1998303	Intergenic	1	NR	1E-6	5.999999999999999	(AAT)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	1	159226975	IGSF4B	ACKR1 - MPTX1	2532	649458		       20.48	       49.53	rs10489849-?	rs10489849	0	10489849	Intergenic	1	NR	1E-6	5.999999999999999	(MCP1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	15q21.3	15	54388434	Intergenic	UNC13C			440279			rs10518765-?	rs10518765	0	10518765	intron	0	NR	1E-6	5.999999999999999	(AlkPhos)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	10q26.2	10	128135192	PTPRE, MKI67	MKI67 - LINC01163	4288	101927381		        8.99	      150.76	rs2387326-?	rs2387326	0	2387326	Intergenic	1	NR	1E-6	5.999999999999999	(VitKPhylloq)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	5q23.2	5	125907327	Intergenic	HMGB1P22 - RPSAP37	644659	100270915		      641.53	       59.41	rs1119582-?	rs1119582	1	465384	Intergenic	1	NR	1E-6	5.999999999999999	(CRP average 2,6,7)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	6q15	6	88403098	Intergenic	ACTBP8 - RNGTT	68	8732		      126.03	      206.80	rs10485165-?	rs10485165	0	10485165	Intergenic	1	NR	1E-6	5.999999999999999	(VitD25OH)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	6q21	6	106451351	Intergenic	AIM1			202			rs1417352-?	rs1417352	0	1417352	intron	0	NR	2E-6	5.698970004336018	(ANP6)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	10q21.1	10	53535114	Intergenic	SNRPEP8 - PCDH15	100874423	65217		      496.57	      267.66	rs583012-?	rs583012	0	583012	Intergenic	1	NR	2E-6	5.698970004336018	(CRP2)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	7p12.3	7	46236130	Intergenic	TTC4P1 - HMGN1P19	222052	100874445		      235.35	      398.48	rs1486139-?	rs1486139	0	1486139	Intergenic	1	NR	2E-6	5.698970004336018	(ANP6)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	13q14.11	13	40233346	Intergenic	LINC00548 - LINC00598	400123	646982		       12.84	      113.79	rs10492681-?	rs10492681	0	10492681	Intergenic	1	NR	2E-6	5.698970004336018	(ALT)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	13q14.3	13	53393956	Intergenic	PCDH8P1 - ZNF646P1	100133285	100419854		      191.54	       14.81	rs10507577-?	rs10507577	0	10507577	Intergenic	1	NR	3E-6	5.522878745280337	(VitD25OH)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	11q23.2	11	113425897	DRD2	DRD2			1813			rs1079596-?	rs1079596	0	1079596	intron	0	NR	3E-6	5.522878745280337	(ANP6)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	1	159178723	IGSF4B	CADM3			57863			rs1474747-?	rs1474747	0	1474747	intron	0	NR	3E-6	5.522878745280337	(MCP1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	7p21.3	7	10110349	Intergenic	PER4 - HSPA8P8	168741	100287551		      474.53	      340.89	rs7778619-?	rs7778619	0	7778619	Intergenic	1	NR	3E-6	5.522878745280337	(CD40L)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903293	Benjamin EJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903293?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	14q23.2	14	61718577	Intergenic	HIF1A			3091			rs8005745-?	rs8005745	0	8005745	intron	0	NR	4E-6	5.397940008672037	(CD40L)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903300	Fox CS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903300?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Body mass index	1,341 European ancestry individuals from 310 families	NA	7q32.3	7	131768766	Intergenic	RPS15AP22 - PLXNA4	100271557	91584		       66.09	      354.57	rs1106683-?	rs1106683	0	1106683	Intergenic	1	NR	1E-7	7	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903300	Fox CS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903300?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Body mass index	1,341 European ancestry individuals from 310 families	NA	7q32.3	7	131768906	Intergenic	RPS15AP22 - PLXNA4	100271557	91584		       66.23	      354.43	rs1106684-?	rs1106684	0	1106684	Intergenic	1	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903300	Fox CS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903300?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Body mass index	1,341 European ancestry individuals from 310 families	NA	13q21.32	13	65546652	Intergenic	STARP1 - HNRNPA3P5	6771	387933		      235.49	      240.89	rs1333026-?	rs1333026	0	1333026	Intergenic	1	NR	8E-6	5.096910013008055	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903300	Fox CS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903300?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Waist circumference	1,079 European ancestry individuals from 310 families	NA	8q21.11	8	74382740	GDAP1	GDAP1 - MIR5681A	54332	100847058		       15.63	      165.80	rs4471028-?	rs4471028	0	4471028	Intergenic	1	NR	2E-7	6.698970004336019	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903300	Fox CS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903300?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Waist circumference	1,079 European ancestry individuals from 310 families	NA	3q13.32	3	117588720	Intergenic	PTMAP8 - IGSF11	728873	152404		      561.68	     1311.91	rs1875517-?	rs1875517	0	1875517	Intergenic	1	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[70,897]	N
08/01/2014	17903308	Gottlieb DJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903308?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	3p22.1	3	40055127	MYRIP	MYRIP			25924			rs6599077-?	rs6599077	0	6599077	intron	0	NR	1E-7	7	(Sleep duration)	NR	NR	Affymetrix [70,897]	N
08/01/2014	17903308	Gottlieb DJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903308?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	13q21.1	13	58330179	Intergenic	RNA5SP30 - CTAGE16P	100873362	341689		      338.72	      198.44	rs10492604-?	rs10492604	0	10492604	Intergenic	1	NR	4E-6	5.397940008672037	(Sleep duration)	NR	NR	Affymetrix [70,897]	N
08/01/2014	17903308	Gottlieb DJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903308?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	5q11.2	5	59380223	PDE4D	PDE4D			5144			rs1823068-?	rs1823068	0	1823068	intron	0	NR	3E-8	7.522878745280337	(Sleepiness)	NR	NR	Affymetrix [70,897]	N
08/01/2014	17903308	Gottlieb DJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903308?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	8q13.3	8	71351721	EYA1	EYA1			2138			rs2218488-?	rs2218488	0	2218488	intron	0	NR	3E-6	5.522878745280337	(Sleepiness)	NR	NR	Affymetrix [70,897]	N
08/01/2014	17903308	Gottlieb DJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903308?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	11q25	11	132411757	OPCML	NTM-IT - OPCML	100874281	4978		      123.30	        3.22	rs1940013-?	rs1940013	0	1940013	Intergenic	1	NR	6E-6	5.221848749616356	(Bedtime)	NR	NR	Affymetrix [70,897]	N
11/25/2008	17903292	Hwang SJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903292?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Cystatin C	981 individuals	NA	20p11.21	20	23597552	CST9L, CST9, CST3	CST9L - CST9	128821	128822		       28.80	        4.86	rs1158167-?	rs1158167	0	1158167	Intergenic	1	NR	9E-9	8.045757490560675	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903292	Hwang SJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903292?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Thyroid stimulating hormone	883 individuals	NA	7p21.1	7	19765857	Intergenic	TMEM196			256130			rs6977660-?	rs6977660	0	6977660	intron	0	NR	4E-6	5.397940008672037	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903292	Hwang SJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903292?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Thyroid stimulating hormone	883 individuals	NA	6q16.3	6	104784358	HACE1	HACE1			57531			rs9322817-?	rs9322817	0	9322817	intron	0	NR	7E-6	5.154901959985742	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903292	Hwang SJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903292?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Thyroid stimulating hormone	883 individuals	NA	7p15.3	7	22069841	RAPGEF5	CDCA7L - RAPGEF5	55536	9771		      123.92	       48.45	rs10499559-?	rs10499559	0	10499559	Intergenic	1	NR	8E-6	5.096910013008055	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903292	Hwang SJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903292?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Urinary albumin excretion	822 individuals	NA	11q23.3	11	114750747	FAM55B	NXPE2 - CADM1	120406	23705		       43.67	      422.88	rs1712790-?	rs1712790	0	1712790	Intergenic	1	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903292	Hwang SJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903292?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Urinary albumin excretion	822 individuals	NA	21q21.3	21	28102877	Intergenic	LOC284825			284825			rs9305354-?	rs9305354	0	9305354	ncRNA	0	NR	8E-6	5.096910013008055	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903299	Kathiresan S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903299?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study.	Lipid traits	1,087 European ancestry individuals	~8,100 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	13q21.31	13	63060217	Intergenic	RPL32P28 - LINC00395	100133193	100874157		      731.82	      607.47	rs9317284-?	rs9317284	0	9317284	Intergenic	1	NR	2E-7	6.698970004336019	(FNBMDm)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	10p15.2	10	3473913	Intergenic	PITRM1-AS1 - KLF6	100507034	1316		      325.28	      302.08	rs2165468-?	rs2165468	0	2165468	Intergenic	1	NR	1E-6	5.999999999999999	(FNBMDm)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	12q21.1	12	74192430	Intergenic	LOC100507377			100507377			rs10506701-?	rs10506701	0	10506701	intron	0	NR	1E-6	5.999999999999999	(TRBMD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	16q23.3	16	82344176	Intergenic	MPHOSPH6 - CDH13	10200	1012		      173.95	      282.62	rs4087296-?	rs4087296	0	4087296	Intergenic	1	NR	3E-7	6.522878745280337	(TRBMDf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	20q11.23	20	37841292	CTNNBL1	CTNNBL1			56259			rs4811196-?	rs4811196	0	4811196	intron	0	NR	1E-6	5.999999999999999	(TRBMDf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	3p24.1	3	29811912	RBMS3	RBMS3			27303			rs10510628-?	rs10510628	0	10510628	intron	0	NR	3E-6	5.522878745280337	(TRBMDm)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	4p16.1	4	10322536	Intergenic	RAF1P1 - ZNF518B	348910	85460		       65.88	      117.34	rs9291683-?	rs9291683	0	9291683	Intergenic	1	NR	2E-6	5.698970004336018	(BUA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	7q35	7	148005600	CNTNAP2	CNTNAP2			26047			rs2214681-?	rs2214681	0	2214681	intron	0	NR	3E-6	5.522878745280337	(BUA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	5q14.3	5	91128462	GPR98	GPR98			84059			rs10514345-?	rs10514345	0	10514345	intron	0	NR	2E-7	6.698970004336019	(NeckZ1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	12q21.31	12	80103143	Intergenic	RPL26P32			400055			rs10506821-?	rs10506821	0	10506821		0	NR	2E-7	6.698970004336019	(ShaftW1f)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	8p12	8	31775931	NRG1	NRG1			3084			rs10503887-?	rs10503887	0	10503887	intron	0	NR	2E-7	6.698970004336019	(ShaftZ1R)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	5p14.1	5	28747216	Intergenic	LINC01021 - LSP1P3	643401	729862		     1250.82	      179.65	rs2548003-?	rs2548003	0	2548003	Intergenic	1	NR	2E-7	6.698970004336019	(NeckZ1rf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3p14.3	3	56496681	ERC2	RNA5SP133 - CCDC66	100873402	285331		      311.46	       60.48	rs2054989-?	rs2054989	0	2054989	Intergenic	1	NR	6E-7	6.221848749616355	(NeckW1rf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	6p24.1	6	13215826	PHACTR1	PHACTR1			221692			rs4715166-?	rs4715166	0	4715166	intron	0	NR	3E-6	5.522878745280337	(NeckW1rf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3p24.3	3	19334299	KCNH8	KCNH8			131096			rs2053506-?	rs2053506	0	2053506	intron	0	NR	4E-6	5.397940008672037	(NeckZ1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	1p11.2	1	121458637	Intergenic	TRNAN5			100189005			rs6600671-?	rs6600671	0	6600671		0	NR	6E-7	6.221848749616355	(NeckZ1rf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	5q13.2	5	72421101	ZNF366	YBX1P5 - ZNF366	100861569	167465		        2.77	       22.31	rs10515148-?	rs10515148	0	10515148	Intergenic	1	NR	6E-7	6.221848749616355	(NeckZ1rf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	11q23.3	11	115893327	Intergenic	LINC00900 - RPL15P15	283143	100128347		      133.13	       56.86	rs638882-?	rs638882	0	638882	Intergenic	1	NR	4E-6	5.397940008672037	(NeckZ1rf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	13q13.3	13	37461052	Intergenic	RPS12P24 - LINC00547	100271551	400121		      239.80	       73.89	rs1590305-?	rs1590305	0	1590305	Intergenic	1	NR	3E-6	5.522878745280337	(NeckZ1rm)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	18q12.1	18	28479148	Intergenic	CDH2 - ARIH2P1	1000	390844		      301.67	      172.38	rs4131805-?	rs4131805	0	4131805	Intergenic	1	NR	2E-6	5.698970004336018	(NSAm)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3q12.3	3	102055199	Intergenic	NFKBIZ - ZPLD1	64332	131368		      194.17	      154.77	rs991258-?	rs991258	0	991258	Intergenic	1	NR	5E-7	6.30102999566398	(ShaftW1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3p14.1	3	69393486	Intergenic	FRMD4B			23150			rs922948-?	rs922948	0	922948	intron	0	NR	2E-6	5.698970004336018	(ShaftW1f)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	11q14.1	11	85111277	Intergenic	DLG2			1740			rs1452928-?	rs1452928	0	1452928	intron	0	NR	7E-7	6.154901959985743	(ShaftW1f)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903296	Kiel DP	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903296?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	12p13.31	12	6471416	VAMP1	VAMP1			6843			rs10492096-?	rs10492096	0	10492096	nearGene-5	0	NR	3E-6	5.522878745280337	(ShaftZ1rf)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903304	Larson MG	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903304?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Atrial fibrillation	151 Other ancestry cases and 1,190 Other ancestry controls from 310 families	NA	13q14.13	13	46259582	Intergenic	LRRC63			220416			rs958546-?	rs958546	0	958546	intron	0	NR	5E-6	5.301029995663981		NR	NR	Affymetrix[70,897]	N
11/25/2008	17903304	Larson MG	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903304?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Atrial fibrillation	151 Other ancestry cases and 1,190 Other ancestry controls from 310 families	NA	15q23	15	69714534	Intergenic	RPLP1 - GEMIN8P1	6176	100128431		      258.99	       88.58	rs4776472-?	rs4776472	0	4776472	Intergenic	1	NR	8E-6	5.096910013008055		NR	NR	Affymetrix[70,897]	N
11/25/2008	17903304	Larson MG	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903304?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Atrial fibrillation	151 Other ancestry cases and 1,190 Other ancestry controls from 310 families	NA	11q22.1	11	99622442	CNTN5	CNTN5			53942			rs10501920-?	rs10501920	0	10501920	intron	0	NR	9E-6	5.045757490560675	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903304	Larson MG	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903304?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Heart failure	75 Other ancestry cases and 1,272 Other ancestry controls from 310 families	NA	10q25.3	10	116816095	KIAA1598	HSPA12A			259217			rs740363-?	rs740363	0	740363	intron	0	NR	9E-6	5.045757490560675	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903304	Larson MG	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903304?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Major CVD	142 Other ancestry cases and 1,203 Other ancestry controls from 310 families	NA	6p24.1	6	13332235	Intergenic	TBC1D7 - GFOD1	51256	54438		        3.65	       31.12	rs499818-?	rs499818	0	499818	Intergenic	1	NR	7E-6	5.154901959985742	(major CVD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	1p31.3	1	63125458	Intergenic	ATG4C - LINC00466	84938	199899		      260.19	       33.63	rs10493340-?	rs10493340	0	10493340	Intergenic	1	NR	2E-6	5.698970004336018	(SBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	8q13.3	8	72194681	Intergenic	TRPA1 - RNA5SP271	8989	100873524		      119.10	      163.05	rs1963982-?	rs1963982	0	1963982	Intergenic	1	NR	3E-6	5.522878745280337	(DBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	14q24.3	14	76147335	Intergenic	IFT43 - GPATCH2L	112752	55668		       63.26	        4.55	rs935334-?	rs935334	0	935334	Intergenic	1	NR	3E-6	5.522878745280337	(DBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	3p26.3	3	2613007	CNTN4	CNTN4			152330			rs4370013-?	rs4370013	0	4370013	intron	0	NR	4E-6	5.397940008672037	(DBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	5q22.1	5	111436706	CAMK4	CAMK4			814			rs10491334-?	rs10491334	0	10491334	intron	0	NR	4E-6	5.397940008672037	(DBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	14q24.3	14	76184421	C14orf118	GPATCH2L			55668			rs2121070-?	rs2121070	0	2121070	intron	0	NR	5E-6	5.301029995663981	(DBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	6q15	6	87942862	Intergenic	AKIRIN2 - SPACA1	55122	81833		      240.60	      104.93	rs2509458-?	rs2509458	0	2509458	Intergenic	1	NR	7E-6	5.154901959985742	(DBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	2q36.3	2	227850659	CCL20, WDR69	CCL20 - TDGF1P2	6364	22816		       33.10	       18.51	rs7591163-?	rs7591163	0	7591163	Intergenic	1	NR	3E-7	6.522878745280337	(DBPLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 Other ancestry individuals	NA	16q23.3	16	83730599	CDH13	CDH13			1012			rs3096277-?	rs3096277	0	3096277	intron	0	NR	1E-9	8.999999999999998	(SBPLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	20q13.13	20	48726522	PREX1	PREX1			57580			rs6063312-?	rs6063312	0	6063312	intron	0	NR	2E-6	5.698970004336018	(RW)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	5q14.3	5	88792622	MEF2C	MEF2C			4208			rs770189-?	rs770189	0	770189	intron	0	NR	3E-6	5.522878745280337	(CB-PWV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	3p22.3	3	34921177	Intergenic	LOC101928135			101928135			rs10514688-?	rs10514688	0	10514688	intron	0	NR	6E-6	5.221848749616356	(CB-PWV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	9q31.2	9	108110027	Intergenic	CHCHD4P2 - RPL36P14	100128657	347292		       12.18	      516.74	rs7042864-?	rs7042864	0	7042864	Intergenic	1	NR	6E-6	5.221848749616356	(CB-PWV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	6q25.2	6	152626818	SYNE1	SYNE1			23345			rs1322512-?	rs1322512	0	1322512	intron	0	NR	8E-6	5.096910013008055	(MAP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	3p24.1	3	30668751	TGFBR2	TGFBR2			7048			rs3773643-?	rs3773643	0	3773643	intron	0	NR	2E-7	6.698970004336019	(MAPLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	8p22	8	17286321	VPS37A	VPS37A			137492			rs3793427-?	rs3793427	0	3793427	intron	0	NR	2E-6	5.698970004336018	(FWLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	13q31.3	13	93238417	GPC6	GPC6			10082			rs6492654-?	rs6492654	1	1116260	intron	0	NR	2E-6	5.698970004336018	(RWLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	2q14.3	2	124240787	CNTNAP5	CNTNAP5			129684			rs1367248-?	rs1367248	0	1367248	intron	0	NR	3E-6	5.522878745280337	(CF-PWVLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	17p12	17	13636487	HS3ST3A1	MIR548H3 - CDRT15P1	100302287	94158		       92.84	      388.01	rs10521232-?	rs10521232	0	10521232	Intergenic	1	NR	4E-6	5.397940008672037	(CF-PWVLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	1q25.1	1	175327312	TNR	TNR			7143			rs3766680-?	rs3766680	0	3766680	intron	0	NR	4E-6	5.397940008672037	(FWLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	3q24	3	143531228	SLC9A9	SLC9A9			285195			rs1371924-?	rs1371924	0	1371924	intron	0	NR	4E-6	5.397940008672037	(RWLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903302	Levy D	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903302?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 Other ancestry individuals	NA	7q33	7	133650423	EXOC4	EXOC4			60412			rs10488172-?	rs10488172	0	10488172	intron	0	NR	8E-6	5.096910013008055	(RWLTA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	2p12	2	81441684	Intergenic	LRRTM1 - MTND4P25	347730	100873246		     1137.09	     1373.28	rs10496265-?	rs10496265	0	10496265	Intergenic	1	NR	1E-8	8	(age at natural menopause)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	12p11.22	12	29960950	Intergenic	RPL21P99 - RNA5SP356	100271429	100873615		      302.11	      345.48	rs1463605-?	rs1463605	0	1463605	Intergenic	1	NR	7E-8	7.154901959985742	(biologic age)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	11q14.3	11	91151171	Intergenic	OSBPL9P3 - RPL7AP57	100420591	100271537		       34.62	     1009.91	rs1528753-?	rs1528753	0	1528753	Intergenic	1	NR	8E-8	7.096910013008055	(age at death)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	7q21.11	7	82708543	Intergenic	MTHFD2P5 - PCLO	442707	27445		      117.78	       45.46	rs2371208-?	rs2371208	0	2371208	Intergenic	1	NR	3E-6	5.522878745280337	(age at death)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	2p12	2	81524000	Intergenic	LRRTM1 - MTND4P25	347730	100873246		     1219.41	     1290.97	rs10496262-?	rs10496262	0	10496262	Intergenic	1	NR	3E-7	6.522878745280337	(age at natural menopause)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	2q24.1	2	154214054	GALNT13	GALNT13			114805			rs958672-?	rs958672	0	958672	intron	0	NR	2E-6	5.698970004336018	(age at natural menopause)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	1q42.3	1	235557598	GNG4	GNG4			2786			rs291353-?	rs291353	0	291353	intron	0	NR	6E-6	5.221848749616356	(age at natural menopause)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	12q24.23	12	119551841	CCDC60	CCDC60 - TMEM233	160777	387890		       10.79	       41.62	rs7137869-?	rs7137869	0	7137869	Intergenic	1	NR	6E-7	6.221848749616355	(walking speed exam 7)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	15q25.3	15	85826199	KLHL25	MIR548AP			100847084			rs7176093-?	rs7176093	0	7176093	nearGene-3	0	NR	7E-6	5.154901959985742	(biologic age)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	3q25.31	3	156384945	KCNAB1	KCNAB1			7881			rs3772255-?	rs3772255	0	3772255	intron	0	NR	8E-6	5.096910013008055	(biologic age)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	1q24.2	1	168649403	DPT	RPL7AP21 - DPT	100271038	1805		       69.94	       46.05	rs1412337-?	rs1412337	0	1412337	Intergenic	1	NR	2E-9	8.698970004336019	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	5p15.32	5	5792394	Intergenic	KIAA0947 - HMGB3P3	23379	100419949		      302.16	      497.41	rs32566-?	rs32566	0	32566	Intergenic	1	NR	2E-9	8.698970004336019	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	6p24.3	6	9450964	Intergenic	HULC - OFCC1	728655	266553		      797.12	      246.67	rs10484246-?	rs10484246	0	10484246	Intergenic	1	NR	8E-8	7.096910013008055	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	8p22	8	12854354	Intergenic	LINC00681 - KIAA1456	101409254	57604		       36.06	       91.32	rs4831837-?	rs4831837	0	4831837	Intergenic	1	NR	5E-7	6.30102999566398	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903295	Lunetta KL	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903295?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	16q21	16	61089243	Intergenic	RPS27AP16 - CDH8	643358	1006		       33.30	      558.02	rs2639889-?	rs2639889	0	2639889	Intergenic	1	NR	9E-7	6.045757490560675	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes (incident)	91 cases, 1,083 controls	NA	2q32.3	2	192049636	TMEFF2	TMEFF2;LOC101927366			23671;101927366			rs10497721-?	rs10497721	0	10497721	intron;intron	0	NR	7E-7	6.154901959985743	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	14q12	14	27330971	Intergenic	LOC728755			728755			rs2877832-?	rs2877832	0	2877832	intron	0	NR	2E-6	5.698970004336018	(FI)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	14q12	14	27330971	Intergenic	LOC728755			728755			rs2877832-?	rs2877832	0	2877832	intron	0	NR	3E-6	5.522878745280337	(HOMA-IR)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	7p14.3	7	29144873	CPVL	CPVL;LOC644086			54504;644086			rs10486607-?	rs10486607	0	10486607	intron;nearGene-5	0	NR	8E-6	5.096910013008055	(HbA1C)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	13q21.33	13	68956532	Intergenic	LINC00550 - ZDHHC20P4	338862	730239		       71.21	       28.41	rs2066219-?	rs2066219	0	2066219	Intergenic	1	NR	9E-6	5.045757490560675	(ISI_0-120)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	8p11.21	8	40626720	ZMAT4	ZMAT4			79698			rs2722425-?	rs2722425	0	2722425	intron	0	NR	2E-8	7.698970004336018	(tFPG)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	3p24.1	3	30305477	Intergenic	RBMS3-AS2 - TGFBR2	100873978	7048		      662.54	      301.03	rs10510634-?	rs10510634	0	10510634	Intergenic	1	NR	5E-6	5.301029995663981	(tFPG)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	4q27	4	120880635	PRDM5	PRDM5			11107			rs180730-?	rs180730	0	180730	intron	0	NR	5E-6	5.301029995663981	(FPG)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	4q27	4	120880635	PRDM5	PRDM5			11107			rs180730-?	rs180730	0	180730	intron	0	NR	6E-6	5.221848749616356	(tFPG)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	8p11.21	8	40626720	ZMAT4	ZMAT4			79698			rs2722425-?	rs2722425	0	2722425	intron	0	NR	9E-6	5.045757490560675	(FPG)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903298	Meigs JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903298?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	5q23.3	5	130607626	Intergenic	ARL2BPP4 - RPL11P2	100130265	133629		       77.53	      382.25	rs7731657-?	rs7731657	0	7731657	Intergenic	1	NR	7E-6	5.154901959985742	(tFPG)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	17q21.33	17	50196930	COL1A1	COL1A1			1277			rs2075555-?	rs2075555	0	2075555	intron	0	NR	8E-8	7.096910013008055	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	5q34	5	164462274	Intergenic	LOC101927835			101927835			rs6556756-?	rs6556756	0	6556756	intron	0	NR	5E-7	6.30102999566398	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	12q21.1	12	73596057	Intergenic	CHCHD3P2 - RPL31P48	100422354	645654		      984.74	       52.58	rs1154865-?	rs1154865	0	1154865	Intergenic	1	NR	7E-7	6.154901959985743	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	18q21.2	18	55997051	Intergenic	RPL21P126 - FLJ45743	100271449	642484		      360.71	        6.56	rs1978503-?	rs1978503	0	1978503	Intergenic	1	NR	1E-6	5.999999999999999	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	13q32.1	13	95222702	ABCC4	ABCC4			10257			rs1926657-?	rs1926657	0	1926657	intron	0	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	7q11.22	7	67594280	Intergenic	STAG3L4 - MTND4P3	64940	100873189		      272.75	      672.04	rs10263639-?	rs10263639	0	10263639	Intergenic	1	NR	3E-6	5.522878745280337	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	2p16.1	2	59272212	Intergenic	LOC101927285			101927285			rs10490113-?	rs10490113	0	10490113	intron	0	NR	5E-6	5.301029995663981	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	21q21.3	21	29805194	GRIK1	GRIK1			2897			rs458685-?	rs458685	0	458685	intron	0	NR	6E-6	5.221848749616356	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	15q21.1	15	48608389	FBN1	FBN1			2200			rs1876206-?	rs1876206	0	1876206	intron	0	NR	6E-6	5.221848749616356	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	3p22.2	3	37954986	CTDSPL	CTDSPL			10217			rs9311171-?	rs9311171	0	9311171	intron	0	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	13q33.1	13	103275657	Intergenic	SLC10A2 - ATP6V1G1P7	6555	100874514		      208.81	      168.36	rs1529276-?	rs1529276	0	1529276	Intergenic	1	NR	2E-6	5.698970004336018	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	6p12.3	6	51801833	PKHD1	PKHD1			5314			rs10498792-?	rs10498792	0	10498792	intron	0	NR	3E-6	5.522878745280337	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	5q14.3	5	83689920	HAPLN1	HAPLN1			1404			rs4466137-?	rs4466137	0	4466137	intron	0	NR	3E-6	5.522878745280337	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903305	Murabito JM	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903305?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	3q24	3	145456001	Intergenic	RNA5SP144 - LARP7P4	100873411	100421509		     1268.98	       67.53	rs345013-?	rs345013	0	345013	Intergenic	1	NR	5E-6	5.301029995663981	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903306	Newton-Cheh C	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903306?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Electrocardiographic traits	1,951 European ancestry individuals from 355 families	NA	13q12.2	13	27305389	RPL21	RASL11A - GTF3A	387496	2971		       31.62	      119.16	rs10507380-?	rs10507380	0	10507380	Intergenic	1	NR	8E-6	5.096910013008055	(QT interval)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903306	Newton-Cheh C	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903306?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Electrocardiographic traits	1,951 European ancestry individuals from 355 families	NA	2q22.1	2	136218685	Intergenic	HNRNPKP2 - UBBP1	389053	7315		       18.18	      110.62	rs882300-?	rs882300	0	882300	Intergenic	1	NR	3E-7	6.522878745280337	(PR interval)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903306	Newton-Cheh C	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903306?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Heart rate variability traits	747 European ancestry individuals from 307 families	NA	4q34.3	4	177397037	NEIL3	NEIL3 - AGA	55247	175		       34.10	       33.74	rs1395479-?	rs1395479	0	1395479	Intergenic	1	NR	7E-6	5.154901959985742	(LF/HF)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903306	Newton-Cheh C	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903306?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Heart rate variability traits	747 European ancestry individuals from 307 families	NA	13q13.3	13	36089165	DCAMKL1	DCLK1			9201			rs9315385-?	rs9315385	0	9315385	intron	0	NR	8E-6	5.096910013008055	(total power)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Coronary artery calcification	Up to 678 individuals	NA	1p22.2	1	90478350	Intergenic	ZNF326 - BARHL2	284695	343472		      449.81	      233.67	rs2390582-?	rs2390582	0	2390582	Intergenic	1	NR	1E-6	5.999999999999999	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Coronary artery calcification	Up to 678 individuals	NA	14q24.2	14	73289591	NUMB	NUMB			8650			rs10483853-?	rs10483853	0	10483853	intron	0	NR	6E-6	5.221848749616356	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Coronary artery calcification	Up to 678 individuals	NA	12q23.2	12	101360176	DRIM	UTP20			27340			rs10507130-?	rs10507130	0	10507130	intron	0	NR	7E-6	5.154901959985742		NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	2q33.2	2	203407367	ABI2	ABI2			10152			rs1376877-?	rs1376877	0	1376877	intron	0	NR	4E-7	6.397940008672037	(ICA IMT)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	10q11.23	10	48901178	LRRC18	WDFY4			57705			rs3849150-?	rs3849150	0	3849150	intron	0	NR	2E-6	5.698970004336018	(AAC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	5p15.2	5	13764310	DNAH5	DNAH5			1767			rs2896103-?	rs2896103	0	2896103	intron	0	NR	5E-6	5.301029995663981	(ABI)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	1q31.1	1	189892274	Intergenic	RNA5SP73 - BRINP3	100873307	339479		      226.02	      205.39	rs1400544-?	rs1400544	0	1400544	Intergenic	1	NR	6E-6	5.221848749616356	(CCA IMT)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	5p15.2	5	13769865	DNAH5	DNAH5			1767			rs7715811-?	rs7715811	0	7715811	intron	0	NR	6E-6	5.221848749616356	(ABI)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	4q28.1	4	126012137	Intergenic	TMEM248P1 - RBM48P1	645841	132817		      287.92	      551.50	rs1320267-?	rs1320267	0	1320267	Intergenic	1	NR	7E-6	5.154901959985742	(ABI)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	11q14.3	11	92218988	Intergenic	RPL7AP57 - FAT3	100271537	120114		       57.04	        6.12	rs1350445-?	rs1350445	0	1350445	Intergenic	1	NR	9E-6	5.045757490560675	(ABI)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903303	O'Donnell CJ	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903303?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	5p15.2	5	13779634	DNAH5	DNAH5			1767			rs1502050-?	rs1502050	0	1502050	intron	0	NR	9E-6	5.045757490560675	(ABI)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	1p22.2	1	88336329	Intergenic	LMO4 - RPL36AP10	8543	100271140		      987.41	      241.52	rs2179965-?	rs2179965	0	2179965	Intergenic	1	NR	1E-6	5.999999999999999	(F3)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	4q13.2	4	66868139	Intergenic	RPS23P3 - CENPC	100271091	1060		      436.62	      604.13	rs1155865-?	rs1155865	0	1155865	Intergenic	1	NR	2E-6	5.698970004336018	(Nam)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	21q21.3	21	28768699	Intergenic	LOC102724420			102724420			rs2832077-?	rs2832077	0	2832077	intron	0	NR	2E-6	5.698970004336018	(F3)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	14q21.3	14	48903598	Intergenic	RPL18P1 - ATP5G2P2	326291	319119		      413.13	      470.31	rs2352904-?	rs2352904	0	2352904	Intergenic	1	NR	2E-6	5.698970004336018	(F2)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	6p23	6	14596134	Intergenic	LINC01108 - RPL6P17	102216342	100131229		      310.68	      506.81	rs6914079-?	rs6914079	0	6914079	Intergenic	1	NR	2E-6	5.698970004336018	(F2)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	5q32	5	147035653	Intergenic	PPP2R2B			5521			rs9325032-?	rs9325032	0	9325032	intron	0	NR	3E-6	5.522878745280337	(F2)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	12q23.3	12	106556917	POLR3B, RFX4	LOC100287944			100287944			rs3891355-?	rs3891355	0	3891355	intron	0	NR	3E-6	5.522878745280337	(Sim)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	11q14.1	11	79354056	Intergenic	TENM4			26011			rs530965-?	rs530965	0	530965	intron	0	NR	4E-6	5.397940008672037	(Nam)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	17q22	17	58770584	PPM1E	PPM1E			22843			rs9303401-?	rs9303401	0	9303401	intron	0	NR	5E-6	5.301029995663981	(NAM)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	11q25	11	134218788	NCAPD3	NCAPD3			23310			rs1031381-?	rs1031381	0	1031381	intron	0	NR	6E-6	5.221848749616356	(F3)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	1q42.2	1	234447872	TARBP1	TARBP1			6894			rs10489896-?	rs10489896	0	10489896	intron	0	NR	6E-6	5.221848749616356	(F2)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	12p11.1	12	33548231	Intergenic	ST13P9 - ALG10	390301	84920		       92.78	      474.05	rs9300212-?	rs9300212	0	9300212	Intergenic	1	NR	8E-6	5.096910013008055	(WRAT)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	9q22.2	9	90647075	DIRAS2	DIRAS2 - OR7E109P	54769	401540		        4.25	       95.43	rs1831521-?	rs1831521	0	1831521	Intergenic	1	NR	8E-6	5.096910013008055	(Nam)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	2q22.1	2	136581370	Intergenic	UBBP1 - THSD7B	7315	80731		      251.37	      300.78	rs934299-?	rs934299	0	934299	Intergenic	1	NR	9E-6	5.045757490560675	(F3)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	20q13.33	20	61278882	CDH4	CDH4			1002			rs1970546-?	rs1970546	0	1970546	intron	0	NR	4E-8	7.397940008672037	(ATCBV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	11q23.2	11	114320294	NNMT	NNMT - C11orf71	4837	54494		        7.78	       71.15	rs2847476-?	rs2847476	0	2847476	Intergenic	1	NR	3E-6	5.522878745280337	(ALLV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	11p13	11	34583888	EHF	ELF5 - EHF	2001	26298		       70.09	       37.15	rs5028798-?	rs5028798	0	5028798	Intergenic	1	NR	3E-6	5.522878745280337	(ATBV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	11q22.1	11	99715005	CNTN5	CNTN5			53942			rs952700-?	rs952700	0	952700	intron	0	NR	6E-6	5.221848749616356	(AFBV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903297	Seshadri S	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903297?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	4q31.3	4	151986548	Intergenic	RNA5SP169 - FBXW7	100873434	55294		       14.94	      334.71	rs360929-?	rs360929	0	360929	Intergenic	1	NR	9E-6	5.045757490560675	(ALTHBV)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	4p15.31	4	20619060	SLIT2	SLIT2			9353			rs1379659-?	rs1379659	0	1379659	UTR-3	0	NR	1E-7	7	(LVDD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	6q15	6	88008048	SPACA1	AKIRIN2 - SPACA1	55122	81833		      305.78	       39.74	rs366676-?	rs366676	0	366676	Intergenic	1	NR	2E-6	5.698970004336018	(LVFS)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	4p15.31	4	20493512	SLIT2	SLIT2			9353			rs666088-?	rs666088	0	666088	intron	0	NR	5E-6	5.301029995663981	(LVDD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	8q13.3	8	72866407	KCNB2	KCNB2			9312			rs10504543-?	rs10504543	0	10504543	intron	0	NR	5E-6	5.301029995663981	(LVSD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	1q31.1	1	190097256	FAM5C	BRINP3			339479			rs1935881-?	rs1935881	0	1935881	nearGene-3	0	NR	6E-6	5.221848749616356	(LAD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	2q36.1	2	221034724	Intergenic	MIR4268 - EPHA4	100422959	2043		     1128.16	      383.30	rs10498091-?	rs10498091	0	10498091	Intergenic	1	NR	6E-6	5.221848749616356	(LVM)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	1p31.3	1	65845182	PDE4B	PDE4B			5142			rs10493389-?	rs10493389	0	10493389	intron	0	NR	7E-6	5.154901959985742	(LAD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	5q14.3	5	85310710	Intergenic	RBBP4P6 - RPL5P17	100820741	100270839		      119.74	      153.65	rs4920799-?	rs4920799	0	4920799	Intergenic	1	NR	7E-6	5.154901959985742	(LVDD)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Endothelial function traits	Up to 1,238 European ancestry individuals	NA	10q24.33	10	103887337	OBFC1	OBFC1			79991			rs3814219-?	rs3814219	0	3814219	intron	0	NR	9E-7	6.045757490560675	(BABF)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	4q25	4	109878941	NOLA1	LRIT3 - KRT19P3	345193	442114		        6.63	         .13	rs6847149-?	rs6847149	0	6847149	Intergenic	1	NR	3E-6	5.522878745280337	(S2EHR)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	1q43	1	237747704	RYR2	RYR2			6262			rs2819770-?	rs2819770	0	2819770	intron	0	NR	4E-6	5.397940008672037	(S2EHR)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	11q22.3	11	110125219	Intergenic	ZC3H12C			85463			rs746463-?	rs746463	0	746463	intron	0	NR	5E-6	5.301029995663981	(P3MRSBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903301	Vasan RS	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903301?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	8p12	8	31078840	WRN	WRN			7486			rs2553268-?	rs2553268	0	2553268	intron	0	NR	6E-6	5.221848749616356	(S2ESBP)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Mean forced vital capacity from 2 exams	Up to 1,222 individuals	NA	7q21.3	7	94424688	COL1A2	COL1A2			1278			rs441051-?	rs441051	0	441051	intron	0	NR	2E-6	5.698970004336018	(meanFVC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Mean forced vital capacity from 2 exams	Up to 1,222 individuals	NA	4q25	4	107194065	Intergenic	VN1R23P - RAC1P5	100312845	402183		       56.78	        8.59	rs10516541-?	rs10516541	0	10516541	Intergenic	1	NR	4E-6	5.397940008672037	(meanFVC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	15q11.2	15	24833640	SNRPN	SNRPN			6638			rs3867498-?	rs3867498	0	3867498	intron	0	NR	1E-6	5.999999999999999	(FEV1slope)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	21q22.3	21	45209675	ADARB1	ADARB1			104			rs2838815-?	rs2838815	0	2838815	intron	0	NR	3E-6	5.522878745280337	(meanratio)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	15q26.1	15	92507736	FLJ32831	C15orf32 - LINC00930	145858	100144604		        6.62	       60.08	rs1455782-?	rs1455782	0	1455782	Intergenic	1	NR	4E-6	5.397940008672037	(ppFVC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	8q11.21	8	50500031	SNTG1	SNTG1			54212			rs310558-?	rs310558	0	310558	intron	0	NR	5E-6	5.301029995663981	(ppratio)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	2q36.3	2	226908750	RHBDD1	RHBDD1			84236			rs3820928-?	rs3820928	0	3820928	intron	0	NR	5E-6	5.301029995663981	(ppFEV1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	14q22.1	14	52052093	NID2	NID2			22795			rs730532-?	rs730532	0	730532	intron	0	NR	6E-6	5.221848749616356	(ppFEF)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	14q23.1	14	57931198	Intergenic	SLC35F4 - C14orf37	341880	145407		       65.32	       72.89	rs808225-?	rs808225	0	808225	Intergenic	1	NR	7E-6	5.154901959985742	(ppfefrat)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	1q21.3	1	154453788	IL6R	IL6R			3570			rs4129267-?	rs4129267	0	4129267	intron	0	NR	7E-6	5.154901959985742	(ppFEF)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	17p12	17	15428200	CDRT4	TEKT3 - CDRT4	64518	284040		       86.56	        7.82	rs2906966-?	rs2906966	0	2906966	Intergenic	1	NR	8E-6	5.096910013008055	(ppFEV1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903307	Wilk JB	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903307?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	7q33	7	138364642	Intergenic	RPS17P12 - IMPDH1P3	442726	136307		       66.14	       75.95	rs357394-?	rs357394	0	357394	Intergenic	1	NR	9E-6	5.045757490560675	(ppFVC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	7p22.2	7	4371578	Intergenic	RPL21P72 - FOXK1	100271181	221937		     1032.95	      310.72	rs10488360-?	rs10488360	0	10488360	Intergenic	1	0.30	7E-6	5.154901959985742	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	1p36.32	1	4255144	Intergenic	LINC01134 - AJAP1	100133612	55966		      339.70	      399.90	rs966321-?	rs966321	0	966321	Intergenic	1	0.47	8E-6	5.096910013008055	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	3p26.1	3	7941140	Intergenic	GRM7 - LMCD1-AS1	2917	100288428		      199.61	      280.01	rs4591494-?	rs4591494	0	4591494	Intergenic	1	0.19	9E-6	5.045757490560675	 	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	13q34	13	113105720	MCF2L, AB116074, AK092739, AK123267, AB002360, F7, CR603372, F10, PROZ	F7			2155			rs561241-?	rs561241	0	561241	nearGene-5	0	0.12	5E-16	15.30102999566398		NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	1p31.1	1	71605446	NEGR1	NEGR1			257194			rs10493485-?	rs10493485	0	10493485	intron	0	0.29	2E-6	5.698970004336018	(tPA)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	5q21.3	5	110161259	Intergenic	PGAM5P1 - TMEM232	100421133	642987		      275.82	      258.24	rs4460176-?	rs4460176	0	4460176	Intergenic	1	0.29	3E-6	5.522878745280337	(PAI-1)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	1q23.2	1	159484147	OR10J1,OR10J5	OR10J4 - OR10J5	391121	127385		       51.01	       50.93	rs4133289-?	rs4133289	0	4133289	Intergenic	1	0.19	2E-7	6.698970004336019	(Hgb)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	2p16.2	2	53010182	Intergenic	MIR4431 - ASB3	100616431	51130		      307.57	      659.80	rs1160297-?	rs1160297	0	1160297	Intergenic	1	0.43	1E-6	5.999999999999999	(Hgb)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	2p16.2	2	53038991	Intergenic	MIR4431 - ASB3	100616431	51130		      336.38	      630.99	rs2357013-?	rs2357013	0	2357013	Intergenic	1	0.45	6E-6	5.221848749616356	(Hgb)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	8q24.13	8	121896264	Intergenic	HAS2-AS1 - MRPS36P3	594842	347704		      250.94	      195.21	rs7844723-?	rs7844723	0	7844723	Intergenic	1	0.45	2E-6	5.698970004336018	(Hgb)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	5q21.1	5	99445399	Intergenic	RPS9P3 - GUSBP8	100133054	441066		      490.39	       87.23	rs1829883-?	rs1829883	0	1829883	Intergenic	1	0.41	6E-6	5.221848749616356	(MCH)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	10p11.21	10	37270652	ANKRD30A	ATP8A2P1 - LINC00993	100422505	101929520		        6.02	       38.53	rs1200821-?	rs1200821	0	1200821	Intergenic	1	0.47	6E-6	5.221848749616356	(MCH)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	11q12.1	11	56698623	OR5AP2, OR5AR1, OR9G1, OR9G4	OR9G1			390174			rs1397048-?	rs1397048	0	1397048	nearGene-5	0	0.4	7E-8	7.154901959985742	(MCH)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	14q32.2	14	98176235	Intergenic	C14orf64 - C14orf177	388011	283598		      198.11	      535.38	rs10484128-?	rs10484128	0	10484128	Intergenic	1	0.15	6E-6	5.221848749616356	(pltadp)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	11q24.1	11	122318757	Intergenic	MIR100 - TRNAK27	406892	100189294		      166.45	      241.19	rs565229-?	rs565229	0	565229	Intergenic	1	0.10	4E-6	5.397940008672037	(pltcoll)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	12q14.2	12	63051312	Intergenic	LDHAL6CP - RSL24D1P5	121498	100129941		       46.32	        3.96	rs10506458-?	rs10506458	0	10506458	Intergenic	1	0.13	5E-6	5.301029995663981	(pltcoll)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	1p34.3	1	37493212	FLJ11730, BC016328	MEAF6			64769			rs9253-?	rs9253	0	9253	ncRNA	0	0.18	4E-6	5.397940008672037	(RBCC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	4p15.33	4	13792792	Intergenic	LINC01182			101929071			rs10489087-?	rs10489087	0	10489087	intron	0	0.13	5E-6	5.301029995663981	(RBCC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	6q25.1	6	149204470	Intergenic	UST - TAB2	10090	23118		      127.48	      113.83	rs636864-?	rs636864	0	636864	Intergenic	1	0.21	6E-6	5.221848749616356	(RBCC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	6q25.1	6	149272784	MAP3K7IP2	UST - TAB2	10090	23118		      195.79	       45.52	rs727979-?	rs727979	0	727979	Intergenic	1	0.14	8E-6	5.096910013008055	(RBCC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	20p12.3	20	7571857	Intergenic	MIR8062 - SRSF10P2	102465865	171472		      200.17	      259.84	rs6108011-?	rs6108011	0	6108011	Intergenic	1	0.28	6E-6	5.221848749616356	(RBCC)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17903294	Yang Q	09/19/2007	BMC Med Genet	http://www.ncbi.nlm.nih.gov/pubmed/17903294?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	14q21.3	14	47394632	MAMDC1	MDGA2			161357			rs7159841-?	rs7159841	0	7159841	intron	0	0.21	2E-7	6.698970004336019	(Viscosity)	NR	NR	Affymetrix[70,897]	N
11/25/2008	17848626	Florez JC	09/10/2007	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/17848626?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A 100K genome-wide association scan for diabetes and related traits in the Framingham Heart Study: replication and integration with other genome-wide datasets.	Type 2 diabetes and 6 quantitative traits	1,087 European ancestry individuals from 307 families	1,465 European ancestry individuals, 1,464 European ancestry cases, 1,467 European ancestry controls, 300 Pima Indian ancestry cases, 334 Pima Indian ancestry controls, 287 Mexican-American ancestry cases, 316 Meican-American ancestry controls, 124 Old Order Amish cases, 295 Old Order Amish controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [66,543]	N
11/25/2008	17846125	Hanson RL	09/10/2007	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/17846125?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A search for variants associated with young-onset type 2 diabetes in American Indians in a 100K genotyping array.	Type 2 diabetes	440 American Indian ancestry cases, 455 American Indian ancestry controls	1,207 American Indian ancestry cases, 1,627 American Indian ancestry controls, 1,465 European ancestry individuals, 427 European ancestry controls, 760 Hispanic individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[80,044]	N
11/25/2008	17846124	Hayes MG	09/10/2007	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/17846124?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of type 2 diabetes genes in Mexican Americans through genome-wide association studies.	Type 2 diabetes	281 Mexican American ancestry cases, 280 Mexican American ancestry controls	1,087 European ancestry individuals, 440 Pima Indian ancestry cases, 455 Pima Indian ancestry controls, 124 Amish cases, 295 Amish controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[88,142]	N
11/25/2008	17846126	Rampersaud E	09/10/2007	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/17846126?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of novel candidate genes for type 2 diabetes from a genome-wide association scan in the Old Order Amish: evidence for replication from diabetes-related quantitative traits and from independent populations.	Type 2 diabetes	124 Old Order Amish cases, 295 Old Order Amish controls	1,555 European ancestry cases, 1,467 European ancestry controls, 300 Pima Indian ancestry cases, 334 Pima Indian ancestry controls, 287 Mexican-American ancestry cases, 316 Meican-American ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[82,485]	N
11/25/2008	17827064	van Es MA	09/07/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17827064?ordinalpos=13&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	ITPR2 as a susceptibility gene in sporadic amyotrophic lateral sclerosis: a genome-wide association study.	Amyotrophic lateral sclerosis	461 European ancestry cases, 450 European ancestry controls	876 European ancestry cases, 906 European ancestry controls	12p11.23	12	26483453	ITPR2	ITPR2			3709			rs2306677-?	rs2306677	0	2306677	intron	0	0.07	3E-6	5.522878745280337		   1.58	[1.30-1.91] 	Illumina[311,946]	N
11/25/2008	17804836	Plenge RM	09/05/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17804836?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	9q33.2	9	120927961	TRAF1-C5	TRAF1			7185			rs3761847-G	rs3761847	0	3761847	intron	0	0.41	4E-14	13.39794000867204	 	   1.32	[1.23-1.42] 	Illumina [297,086]	N
11/25/2008	17804836	Plenge RM	09/05/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17804836?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-?	rs2476601	0	2476601	missense;intron	0	0.10	2E-11	10.69897000433602	 	   1.72	[NR] 	Illumina [297,086]	N
11/25/2008	17804836	Plenge RM	09/05/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17804836?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	6p21.32	6	32609603	HLA-DRB1	TRNAI25			100189401			rs660895-?	rs660895	0	660895		0	0.21	1E-108	108	 	   3.62	[NR] 	Illumina [297,086]	N
11/25/2008	17804789	Raelson JV	09/05/2007	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/17804789?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci.	Crohn's disease	382 French Canadian founder trios	750 European ancestry cases, 828 European ancestry controls, 521 Europeann ancestry trios	1p31.3[rs11209003]; 1p31.3[rs11209002]			IL23R	 - 						17 marker haplotype-1	rs11209003,rs11209002,rs2064689,rs1004819,rs2902440,rs11465802,rs2201841,rs11465804,rs11209026,rs1343151,rs10889676,rs10889677,rs9988642,rs12567232,rs6669582,rs10789230					0.23	1E-8			   1.38	[1.23-1.53] 	Perlegen [164,279]	N
11/25/2008	17804789	Raelson JV	09/05/2007	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/17804789?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci.	Crohn's disease	382 French Canadian founder trios	750 European ancestry cases, 828 European ancestry controls, 521 Europeann ancestry trios	1p31.3[rs11209003]; 1p31.3[rs11209002]			IL23R	 - 						17 marker haplotype-2	rs11209003,rs11209002,rs2064689,rs1004819,rs2902440,rs11465802,rs2201841,rs11465804,rs11209026,rs1343151,rs10889676,rs10889677,rs9988642,rs12567232,rs6669582,rs10789230					0.97	2E-7			   2.56	[1.75-3.70] 	Perlegen [164,279]	N
11/25/2008	17804789	Raelson JV	09/05/2007	Proc Natl Acad Sci U S A	http://www.ncbi.nlm.nih.gov/pubmed/17804789?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci.	Crohn's disease	382 French Canadian founder trios	750 European ancestry cases, 828 European ancestry controls, 521 Europeann ancestry trios	16q12.1	16	50722863	NOD2	NOD2			64127			rs5743289-?	rs5743289	0	5743289	intron	0	NR	6E-17	16.22184874961636	 	NR	NR	Perlegen [164,279]	N
11/25/2008	17767159	Menzel S	09/02/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17767159?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15.	F-cell distribution	179 European ancestry individuals	90 European ancestry individuals	2p16.1	2	60490908	BCL11A	BCL11A			53335			rs1427407-?	rs1427407	0	1427407	intron	0	0.14	6E-31	30.22184874961636		  13.10	[NR] % of variance explained	Illumina [308,015]	N
11/25/2008	17767159	Menzel S	09/02/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17767159?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15.	F-cell distribution	179 European ancestry individuals	90 European ancestry individuals	6q23.3	6	135097880	Intergenic	MIR3662 - MYB	100500880	4602		      118.45	       83.44	rs9399137-?	rs9399137	0	9399137	Intergenic	1	0.23	3E-36	35.52287874528034	 	  15.80	[NR] % of variance explained	Illumina [308,015]	N
11/25/2008	17767159	Menzel S	09/02/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17767159?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15.	F-cell distribution	179 European ancestry individuals	90 European ancestry individuals	11p15.5			HBB	 - 						NR	NR					0.33	2E-38			  10.20	[NR] % of variance explained	Illumina [308,015]	N
11/25/2008	17767157	Weedon MN	09/02/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17767157?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A common variant of HMGA2 is associated with adult and childhood height in the general population.	Height	4,921 European ancestry individuals	19,064 European ancestry adults, 6,827 European ancestry children	12q14.3	12	65964567	HMGA2	HMGA2			8091			rs1042725-C	rs1042725	0	1042725	UTR-3	0	0.51	6E-16	15.22184874961635	 	    .40	[NR] cm per copy in adult height	Affymetrix [364,301]	N
11/25/2008	17690259	Thorleifsson G	08/09/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17690259?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma.	Glaucoma (exfoliation)	75 European ancestry cases, 14,474 European ancestry controls	199 European ancestry cases, 198 European ancestry controls	15q24.1	15	73927241	LOXL1	LOXL1;LOXL1-AS1			4016;100287616			rs3825942-G	rs3825942	0	3825942	missense;intron	0	0.85	3E-21	20.52287874528034	 	  20.10	[10.80-37.41] 	Illumina  [304,250]	N
11/25/2008	17684544	Franke A	08/08/2007	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/17684544?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Systematic association mapping identifies NELL1 as a novel IBD disease gene.	Crohn's disease	393 European ancestry cases, 399 European ancestry controls	375 European ancestry trios, 1,395 European ancestry cases, 1,603 European ancestry controls, 454 French Canadian founder trios, 466 French Canadian founder cases, 358 French Canadian founder controls	16q12.1	16	50722970	CARD15	NOD2			64127			rs2076756-?	rs2076756	0	2076756	intron	0	0.27	1E-21	21	 	   1.71	[1.42-2.05] 	Affymetrix[92,387]	N
11/25/2008	17684544	Franke A	08/08/2007	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/17684544?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Systematic association mapping identifies NELL1 as a novel IBD disease gene.	Crohn's disease	393 European ancestry cases, 399 European ancestry controls	375 European ancestry trios, 1,395 European ancestry cases, 1,603 European ancestry controls, 454 French Canadian founder trios, 466 French Canadian founder cases, 358 French Canadian founder controls	5p13.1	5	40414965	PTGER4	LINC00603 - PTGER4	102467077	5734		      361.64	      264.97	rs1992660-?	rs1992660	0	1992660	Intergenic	1	0.39	4E-7	6.397940008672037	 	   1.42	[1.24-1.67] 	Affymetrix[92,387]	N
11/25/2008	17684544	Franke A	08/08/2007	PLoS One	http://www.ncbi.nlm.nih.gov/pubmed/17684544?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Systematic association mapping identifies NELL1 as a novel IBD disease gene.	Crohn's disease	393 European ancestry cases, 399 European ancestry controls	375 European ancestry trios, 1,395 European ancestry cases, 1,603 European ancestry controls, 454 French Canadian founder trios, 466 French Canadian founder cases, 358 French Canadian founder controls	11p15.1	11	20677383	NELL1	NELL1			4745			rs1793004-?	rs1793004	0	1793004	intron	0	0.27	3E-6	5.522878745280337	 	   1.30	[1.12-1.52] 	Affymetrix[92,387]	N
11/25/2008	17671248	Dunckley T	08/01/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17671248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Whole-genome analysis of sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	386 European ancestry cases, 542 European ancestry controls	901 cases and 1,025 controls of European, Hispanic, Asian, American Indian, Pacific Islander, and other ancestries	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix and Illumina[776,955]	N
11/25/2008	17653210	Maeda S	08/01/2007	Kidney Int Suppl	http://www.ncbi.nlm.nih.gov/pubmed/17653210?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genetic variations associated with diabetic nephropathy and type II diabetes in a Japanese population.	Type 2 diabetes nephropathy	94 Japanese ancestry cases, 94 Japanese ancestry controls	NA	7p14.2	7	36878390	ELMO1	ELMO1			9844			rs741301-?	rs741301	0	741301	intron	0	NR	8E-6	5.096910013008055	 	   2.67	[1.71-4.16] 	NR[~80,000]	N
11/25/2008	17667963	Shifman S	07/31/2007	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/17667963?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A whole genome association study of neuroticism using DNA pooling.	Neuroticism	1,038 European ancestry cases, 1,016 European ancestry controls	831 European ancestry cases, 702 European ancestry controls	5q11.2	5	59546948	PDE4D	PDE4D			5144			rs702543-A	rs702543	0	702543	intron	0	0.55	2E-6	5.698970004336018	 	   1.27	[1.15-1.40] 	Affymetrix[452,574] (pooled)	N
11/25/2008	17660530	Hafler DA	07/29/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17660530?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	10p15.1	10	6060049	IL2RA	IL2RA			3559			rs12722489-C	rs12722489	0	12722489	intron	0	0.85	3E-8	7.522878745280337	 	   1.25	[1.11-1.36] 	Affymetrix[334,923]	N
11/25/2008	17660530	Hafler DA	07/29/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17660530?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	5p13.2	5	35874473	IL7RA	IL7R			3575			rs6897932-C	rs6897932	0	6897932	missense	0	0.75	3E-7	6.522878745280337	 	   1.18	[1.11-1.26] 	Affymetrix[334,923]	N
11/25/2008	17660530	Hafler DA	07/29/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17660530?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	16p13.13	16	11155472	KIAA0350	CLEC16A			23274			rs6498169-G	rs6498169	0	6498169	intron	0	0.37	4E-6	5.397940008672037		   1.14	[1.08-1.21] 	Affymetrix[334,923]	N
11/25/2008	17660530	Hafler DA	07/29/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17660530?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	1p22.1	1	92838046	RPL5	RPL5;FAM69A			6125;388650			rs6604026-C	rs6604026	0	6604026	intron;intron	0	0.29	8E-6	5.096910013008055		   1.15	[1.08-1.22] 	Affymetrix[334,923]	N
11/25/2008	17660530	Hafler DA	07/29/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17660530?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	9q33.1	9	119222275	DBC1	BRINP1			1620			rs10984447-A	rs10984447	0	10984447	intron	0	0.77	8E-6	5.096910013008055	 	   1.17	[1.09-1.25] 	Affymetrix[334,923]	N
11/25/2008	17660530	Hafler DA	07/29/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17660530?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	6p21.32	6	32445274	HLA-DRA	HLA-DRA			3122			rs3135388-A	rs3135388	0	3135388	intron	0	0.23	9E-81	80.04575749056066	 	   1.99	[1.84-2.15] 	Affymetrix[334,923]	N
11/25/2008	17611496	Moffatt MF	07/26/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17611496	Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma.	Asthma	994 European ancestry cases, 1,243 European ancestry controls	200 European ancestry cases, 2,120 European ancestry controls	17q12	17	39913696	ORMDL3	GSDMB			55876			rs7216389-T	rs7216389	0	7216389	intron	0	0.52	9E-11	10.04575749056067		   1.45	[1.17-1.81] 	Illumina [307,328]	N
11/25/2008	17658951	Scuteri A	07/20/2007	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/17658951?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.	Obesity-related traits	4,741 Sardinia individuals	3,205 African American, Hispanic, and European ancestry individuals	16q12.2	16	53796553	FTO	FTO			79068			rs9930506-A	rs9930506	0	9930506	intron	0	0.54	9E-7	6.045757490560675	(BMI)	    .13	[NR] SD lower (BMI)	Affymetrix[362,129]	N
11/25/2008	17658951	Scuteri A	07/20/2007	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/17658951?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.	Obesity-related traits	4,741 Sardinia individuals	3,205 African American, Hispanic, and European ancestry individuals	16q12.2	16	53796553	FTO	FTO			79068			rs9930506-A	rs9930506	0	9930506	intron	0	0.54	3E-8	7.522878745280337	(hip)	    .16	[NR] SD lower (hip)	Affymetrix[362,129]	N
11/25/2008	17658951	Scuteri A	07/20/2007	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/17658951?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.	Obesity-related traits	4,741 Sardinia individuals	3,205 African American, Hispanic, and European ancestry individuals	16q12.2	16	53796553	FTO	FTO			79068			rs9930506-A	rs9930506	0	9930506	intron	0	0.54	9E-7	6.045757490560675	(weight)	    .12	[NR] SD lower (weight)	Affymetrix[362,129]	N
11/25/2008	17641165	Fellay J	07/19/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17641165?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A whole-genome association study of major determinants for host control of HIV-1.	HIV-1 viral setpoint	486 European ancestry cases	140 European ancestry cases	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Illumina[535,101]	N
11/25/2008	17634447	Stefansson H	07/19/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634447?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genetic risk factor for periodic limb movements in sleep.	Restless legs syndrome	306 European ancestry cases, 15,664 European ancestry controls	311 European ancestry cases, 1,895 European ancestry controls	6p21.2	6	38473194	BTBD9	BTBD9			114781			rs3923809-A	rs3923809	0	3923809	intron	0	0.66	1E-17	17	 	   1.90	[1.50-2.20] 	Illumina[306,937]	N
11/25/2008	17634449	Samani NJ	07/18/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634449?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	6q25.1	6	150931849	MTHFD1L	MTHFD1L			25902			rs6922269-A	rs6922269	0	6922269	intron	0	0.25	3E-8	7.522878745280337	 	   1.23	[1.15-1.33] 	Affymetrix [377,857]	N
11/25/2008	17634449	Samani NJ	07/18/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634449?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	2q36.3	2	226203364	pseudogene	NYAP2 - MIR5702	57624	100847053		      549.35	      455.35	rs2943634-C	rs2943634	0	2943634	Intergenic	1	0.65	2E-7	6.698970004336019	 	   1.21	[1.13-1.30] 	Affymetrix [377,857]	N
11/25/2008	17634449	Samani NJ	07/18/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634449?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	1q41	1	222650187	MIA3	MIA3			375056			rs17465637-C	rs17465637	0	17465637	intron	0	0.71	1E-6	5.999999999999999		   1.20	[1.12-1.30] 	Affymetrix [377,857]	N
11/25/2008	17634449	Samani NJ	07/18/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634449?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	9p21.3	9	22125504	Intergenic	UBA52P6 - DMRTA1	100130239	63951		      112.97	      321.34	rs1333049-C	rs1333049	0	1333049	Intergenic	1	0.47	3E-19	18.52287874528033	 	   1.36	[1.27-1.46] 	Affymetrix [377,857]	N
11/25/2008	17634449	Samani NJ	07/18/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634449?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	1p13.3	1	109279544	PSRC1	PSRC1			84722			rs599839-A	rs599839	0	599839	nearGene-3	0	0.77	4E-9	8.397940008672036		   1.29	[1.18-1.40] 	Affymetrix [377,857]	N
11/25/2008	17634449	Samani NJ	07/18/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634449?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	10q11.21	10	44258419	CXCL12	LINC00841 - CXCL12	283033	6387		      288.51	      111.73	rs501120-T	rs501120	0	501120	Intergenic	1	0.87	9E-8	7.045757490560674		   1.33	[1.20-1.48] 	Affymetrix [377,857]	N
11/25/2008	17634449	Samani NJ	07/18/2007	N Engl J Med	http://www.ncbi.nlm.nih.gov/pubmed/17634449?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	15q22.33	15	67166301	SMAD3	SMAD3			4088			rs17228212-C	rs17228212	0	17228212	intron	0	0.30	2E-7	6.698970004336019	 	   1.21	[1.13-1.30] 	Affymetrix [377,857]	N
11/25/2008	17637780	Winkelmann J	07/18/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17637780?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions.	Restless legs syndrome	401 European ancestry cases, 1,644 European ancestry controls	906 European ancestry cases, 891 European ancestry controls, 255 French Canadian cases, 287 French Canadian controls	2p14	2	66554321	MEIS1	MEIS1			4211			rs2300478-G	rs2300478	0	2300478	intron	0	0.24	3E-28	27.52287874528033	 	   1.74	[1.57-1.92] 	Affymetrix[236,758]	N
11/25/2008	17637780	Winkelmann J	07/18/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17637780?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions.	Restless legs syndrome	401 European ancestry cases, 1,644 European ancestry controls	906 European ancestry cases, 891 European ancestry controls, 255 French Canadian cases, 287 French Canadian controls	6p21.2	6	38398065	BTBD9	BTBD9			114781			rs9296249-T	rs9296249	0	9296249	intron	0	0.76	4E-18	17.39794000867204	 	   1.67	[1.49-1.89] 	Affymetrix[236,758]	N
11/25/2008	17637780	Winkelmann J	07/18/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17637780?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions.	Restless legs syndrome	401 European ancestry cases, 1,644 European ancestry controls	906 European ancestry cases, 891 European ancestry controls, 255 French Canadian cases, 287 French Canadian controls	15q23	15	67744514	MAP2K5, LBXCOR1	MAP2K5			5607			rs12593813-G	rs12593813	0	12593813	intron	0	0.67	1E-15	15	 	   1.50	[1.36-1.66] 	Affymetrix[236,758]	N
11/25/2008	17632509	Buch S	07/15/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17632509?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association scan identifies the hepatic cholesterol transporter ABCG8 as a susceptibility factor for human gallstone disease.	Gallstones	280 European ancestry cases, 360 European ancestry controls	1,833 European ancestry cases, 1,035 European ancestry controls, 167 Hispanic cases, 167 Hispanic controls	2p21	2	43839108	ABCG8	ABCG5;ABCG8			64240;64241			rs11887534-C	rs11887534	0	11887534	nearGene-5;missense	0	0.10	1E-14	14	 	   2.20	[1.80-2.60] 	Affymetrix[382,492]	N
11/25/2008	17632545	Hakonarson H	07/15/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17632545?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	16p13.13	16	11144926	KIAA0350	CLEC16A			23274			rs2903692-G	rs2903692	0	2903692	intron	0	0.62	7E-11	10.15490195998574	 	   1.54	[1.32-1.79] 	Illumina[543,071]	N
11/25/2008	17632545	Hakonarson H	07/15/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17632545?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	6p21.32	6	32700133	HLA-DRB1	TRNAI25			100189401			rs2647044-A	rs2647044	0	2647044		0	0.13	1E-16	16		   8.30	[6.97-9.89] 	Illumina[543,071]	N
11/25/2008	17632545	Hakonarson H	07/15/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17632545?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-A	rs2476601	0	2476601	missense;intron	0	0.09	1E-7	7	 	   1.80	[1.44-2.24] 	Illumina[543,071]	N
11/25/2008	17632545	Hakonarson H	07/15/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17632545?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	11p15.5	11	2148913	INS	IGF2;IGF2-AS;INS-IGF2			3481;51214;723961			rs1004446-C	rs1004446	0	1004446	intron;intron;intron	0	0.65	4E-9	8.397940008672036	 	   1.61	[1.37-1.89] 	Illumina[543,071]	N
11/25/2008	17618284	Tomlinson I	07/08/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17618284?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q24.21.	Colorectal cancer	930 European ancestry cases, 960 European ancestry controls	7,334 European ancestry cases, 5,246 European ancestry controls	8q24.21	8	127401060	Intergenic	CCAT2;LOC101930033			101805488;101930033			rs6983267-G	rs6983267	0	6983267	ncRNA;intron	0	0.49	1E-14	14	 	   1.27	[1.16-1.39] 	Illumina[547,647]	N
11/25/2008	17618283	Zanke BW	07/08/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17618283?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24.	Colorectal cancer	1,257 Other ancestry cases, 1,336 Other ancestry controls	5,084 European ancestry cases, 5,388 European ancestry controls, 1,139 Other ancestry cases, 1,055 European ancestry controls	8q24.21	8	127395198	ORF DQ515897	LOC101930033			101930033			rs10505477-A	rs10505477	0	10505477	intron	0	0.50	3E-11	10.52287874528034	 	   1.17	[1.12-1.23] 	Illumina and Affymetrix[99,632]	N
11/25/2008	17603472	Gudbjartsson DF	07/01/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17603472?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Variants conferring risk of atrial fibrillation on chromosome 4q25.	Atrial fibrillation/atrial flutter	550 European ancestry cases, 4,476 European ancestry controls	3,030 European ancestry cases, 14,780 European ancestry controls, 333 Han Chinese ancestry cases, 2,836 Han Chinese ancestry controls	4q25	4	110789013	PITX2,ENPEP	PITX2 - MIR297	5308	100126354		      146.89	       71.57	rs2200733-T	rs2200733	0	2200733	Intergenic	1	0.11	3E-41	40.52287874528033	 	   1.72	[1.59-1.86] 	Illumina[316,515]	N
11/25/2008	17603472	Gudbjartsson DF	07/01/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17603472?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Variants conferring risk of atrial fibrillation on chromosome 4q25.	Atrial fibrillation/atrial flutter	550 European ancestry cases, 4,476 European ancestry controls	3,030 European ancestry cases, 14,780 European ancestry controls, 333 Han Chinese ancestry cases, 2,836 Han Chinese ancestry controls	4q25	4	110799605	PITX2,ENPEP	PITX2 - MIR297	5308	100126354		      157.48	       60.98	rs10033464-T	rs10033464	0	10033464	Intergenic	1	0.08	7E-11	10.15490195998574	 	   1.39	[1.26-1.53] 	Illumina[316,515]	N
11/25/2008	17603485	Gudmundsson J	07/01/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17603485?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes.	Prostate cancer	1,501 European ancestry cases, 11,290 European ancestry controls	1,992 European ancestry cases, 3,058 European ancestry controls	17q12	17	37738049	TCF2	HNF1B			6928			rs4430796-A	rs4430796	0	4430796	intron	0	0.49	1E-11	11	 	   1.22	[1.15-1.30] 	Illumina[310,520]	N
11/25/2008	17603485	Gudmundsson J	07/01/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17603485?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes.	Prostate cancer	1,501 European ancestry cases, 11,290 European ancestry controls	1,992 European ancestry cases, 3,058 European ancestry controls	17q24.3	17	71112612	Intergenic	CASC17			101928165			rs1859962-G	rs1859962	0	1859962	intron	0	0.46	3E-10	9.522878745280336	 	   1.20	[1.14-1.27] 	Illumina[310,520]	N
11/25/2008	17668382	Salonen JT	06/26/2007	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/17668382?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium.	Type 2 diabetes	201 Finland founder cases, 200 Finland founder controls, 200 Ashkenazi Jewish cases, 197 Ashkenazi Jewish controls, 99 European ancestry cases, 100 European ancestry controls	2,573 European ancestry cases, 2,776 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-A	rs7903146	0	7903146	intron	0	NR	5E-8	7.30102999566398	 	   1.71	[1.41-2.08] 	Illumina  [315,917]	N
11/25/2008	17668382	Salonen JT	06/26/2007	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/17668382?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium.	Type 2 diabetes	201 Finland founder cases, 200 Finland founder controls, 200 Ashkenazi Jewish cases, 197 Ashkenazi Jewish controls, 99 European ancestry cases, 100 European ancestry controls	2,573 European ancestry cases, 2,776 European ancestry controls	2q12.1	2	105221141	Intergenic	MRPS9 - GPR45	64965	11250		      121.18	       20.60	rs6712932-?	rs6712932	0	6712932	Intergenic	1	NR	6E-6	5.221848749616356	 	   1.52	[1.27-1.82] 	Illumina  [315,917]	N
11/25/2008	17558408	van Heel DA	06/10/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17558408?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	4q27	4	122588266	KIAA1109,TENR,IL2,IL21	IL2 - IL21	3558	59067		      131.77	       24.36	rs6822844-G	rs6822844	0	6822844	Intergenic	1	0.82	1E-14	14		   1.59	[1.41-1.75] 	Illumina[310,605]	N
11/25/2008	17558408	van Heel DA	06/10/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17558408?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21.	Celiac disease	778 European ancestry cases, 1,422 European ancestry controls	991 European ancestry cases, 1,489 European ancestry controls	6p21.32	6	32638107	HLA-DQA1	HLA-DQA1			3117			rs2187668-A	rs2187668	0	2187668	intron	0	0.14	1E-19	19	 	   7.04	[6.08-8.15] 	Illumina[310,605]	N
11/25/2008	17553421	Reiman EM	06/07/2007	Neuron	http://www.ncbi.nlm.nih.gov/pubmed/17553421?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	GAB2 alleles modify Alzheimer's risk in APOE epsilon4 carriers.	Alzheimer's disease (late onset)	446 cases, 290 controls	415 Other ancestry cases, 260 Other ancestry controls	11q14.1	11	78380104	GAB2	GAB2			9846			rs2373115-G	rs2373115	0	2373115	intron	0	0.70	1E-10	10	 	   4.06	[2.81-14.69] 	Affymetrix[312,316]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	16p12.2	16	23622705	PALB2,NDUFAB1,DCTN5	PALB2			79728			rs420259-A	rs420259	0	420259	intron	0	0.72	6E-8	7.221848749616355	 	   2.08	[1.60-2.71] 	Affymetrix [469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	6p21.1	6	42763377	NR	TRNAI25			100189401			rs6458307-?	rs6458307	0	6458307		0	0.69	4E-6	5.397940008672037	 	   1.19	[1.04-1.33] 	Affymetrix [469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	3q27.1	3	183152030	NR	LAMP3			27074			rs683395-G	rs683395	0	683395	intron	0	0.08	5E-6	5.301029995663981	 	   1.47	[1.26-1.71] 	Affymetrix [469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	2q37.3	2	240576179	NR	RNPEPL1			57140			rs2953145-C	rs2953145	0	2953145	intron	0	0.23	7E-6	5.154901959985742		   1.84	[1.31-2.58] 	Affymetrix [469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	20p13	20	3795528	NR	CDC25B			994			rs3761218-C	rs3761218	0	3761218	intron	0	0.64	7E-6	5.154901959985742	 	   1.03	[1.15-1.23] 	Affymetrix [469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	14q23.1	14	57652478	NR	SLC35F4			341880			rs10134944-T	rs10134944	0	10134944	intron	0	0.09	7E-6	5.154901959985742	 	   1.45	[1.24-1.68] 	Affymetrix [469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	14q32.33	14	104042739	NR	TDRD9			122402			rs11622475-C	rs11622475	0	11622475	intron	0	0.70	8E-6	5.096910013008055		   1.13	[0.89-1.44] 	Affymetrix [469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	9p21.3	9	22125504	CDKN2A,CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      112.97	      321.34	rs1333049-C	rs1333049	0	1333049	Intergenic	1	0.47	1E-13	13	 	   1.47	[1.27-1.70] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	1q43	1	240282296	Intergenic	FMN2			56776			rs17672135-T	rs17672135	0	17672135	intron	0	0.87	2E-6	5.698970004336018		   1.43	[1.23-1.64] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	22q12.1	22	26293669	Intergenic	SEZ6L			23544			rs688034-T	rs688034	0	688034	intron	0	0.31	4E-6	5.397940008672037		   1.11	[0.99-1.25] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	16q23.3	16	83178793	Intergenic	CDH13			1012			rs8055236-G	rs8055236	0	8055236	intron	0	0.80	6E-6	5.221848749616356		   1.91	[1.33-2.74] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	3p21.31	3	49664550	BSN, MST1	BSN			8927			rs9858542-A	rs9858542	0	9858542	cds-synon	0	0.28	4E-8	7.397940008672037	 	   1.09	[0.96-1.24] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	5q33.1	5	150860514	IRGM	IRGM - ZNF300	345611	91975		       11.85	       33.87	rs1000113-T	rs1000113	0	1000113	Intergenic	1	0.07	3E-7	6.522878745280337	 	   1.54	[1.31-1.82] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	10q24.2	10	99528007	NKX2-3	LOC101927324			101927324			rs10883365-G	rs10883365	0	10883365	ncRNA	0	0.48	6E-8	7.221848749616355	 	   1.20	[1.03-1.39] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	18p11.21	18	12779948	PTPN2	CEP76 - PTPN2	79959	5771		       77.17	        5.53	rs2542151-G	rs2542151	0	2542151	Intergenic	1	0.16	2E-7	6.698970004336019	 	   1.30	[1.14-1.48] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	6p21.32	6	32690533	NR	TRNAI25			100189401			rs9469220-A	rs9469220	0	9469220		0	0.48	2E-6	5.698970004336018	 	   1.14	[0.98-1.32] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	7q36.1	7	148560956	NR	RNA5SP249 - RPL32P17	100873505	402716		      710.97	       19.45	rs7807268-G	rs7807268	0	7807268	Intergenic	1	0.46	4E-6	5.397940008672037	 	   1.38	[1.20-1.60] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	10p15.1	10	3820350	NR	KLF6 - MIR6078	1316	102464829		       35.07	      170.81	rs6601764-C	rs6601764	0	6601764	Intergenic	1	0.41	9E-6	5.045757490560675	 	   1.16	[1.01-1.33] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	16q12.1	16	50705671	NOD2	NOD2			64127			rs17221417-G	rs17221417	0	17221417	intron	0	0.29	4E-11	10.39794000867204	 	   1.29	[1.13-1.46] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	1p31.3	1	67209833	IL23R	IL23R			149233			rs11805303-T	rs11805303	0	11805303	intron	0	0.32	6E-12	11.22184874961635		   1.39	[1.22-1.58] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	2q37.1	2	233250193	ATG16L1	ATG16L1			55054			rs10210302-T	rs10210302	0	10210302	nearGene-5	0	0.48	5E-14	13.30102999566398	 	   1.19	[1.01-1.41] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	5p13.1	5	40401407	Intergenic	LINC00603 - PTGER4	102467077	5734		      348.08	      278.52	rs17234657-G	rs17234657	0	17234657	Intergenic	1	0.13	2E-12	11.69897000433602	 	   1.54	[1.34-1.76] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	10q21.2	10	62685804	Intergenic	ZNF365 - ALDH7A1P4	22891	544		       13.79	       55.19	rs10761659-G	rs10761659	0	10761659	Intergenic	1	0.46	2E-6	5.698970004336018	 	   1.23	[1.05-1.45] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	5q31.1	5	132406536	Intergenic	SLC22A5 - C5orf56	6584	441108		       10.92	        4.24	rs6596075-C	rs6596075	0	6596075	Intergenic	1	0.17	3E-6	5.522878745280337	 	   1.55	[1.00-2.39] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Hypertension	1,952 European ancestry cases, 2,938 European ancestry controls	NA	1q43	1	239273242	RYR2,CHRM3,ZP4	RPL39P10 - CHRM3	100129952	1131		      220.29	      113.33	rs2820037-T	rs2820037	0	2820037	Intergenic	1	0.14	8E-7	6.096910013008056	 	   1.54	[1.03-2.31] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Hypertension	1,952 European ancestry cases, 2,938 European ancestry controls	NA	15q26.2	15	96287321	Intergenic	NR2F2-AS1			644192			rs2398162-A	rs2398162	0	2398162	intron	0	0.74	6E-6	5.221848749616356		   1.31	[1.03-1.67] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	7q32.3	7	131685280	Intergenic	RPS14P10 - RPS15AP22	647034	100271557		       19.50	       16.94	rs11761231-C	rs11761231	0	11761231	Intergenic	1	0.62	4E-7	6.397940008672037	(sex-differentiated)	   1.32	[NR] (women)	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	22q12.3	22	37155567	NR	IL2RB - C1QTNF6	3560	114904		        5.65	       24.60	rs743777-G	rs743777	0	743777	Intergenic	1	0.29	1E-6	5.999999999999999		   1.09	[0.97-1.24] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	21q22.2	21	41139991	NR	YRDCP3 - LINC00323	100861429	284835		      275.52	        1.51	rs2837960-G	rs2837960	0	2837960	Intergenic	1	0.17	2E-6	5.698970004336018		   1.05	[0.93-1.20] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	4p15.2	4	25415622	NR	ANAPC4			29945			rs3816587-C	rs3816587	0	3816587	ncRNA	0	0.41	9E-6	5.045757490560675	 	   1.09	[0.96-1.25] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	6	32606394	HLA-DRB1	TRNAI25			100189401			rs615672-?	rs615672	0	615672		0	NR	8E-27	26.09691001300805	 	NR	NR	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	1p13.2	1	113761186	PTPN22	PHTF1			10745			rs6679677-A	rs6679677	0	6679677	nearGene-5	0	0.10	6E-25	24.22184874961636	 	   1.98	[1.72-2.27] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	6p21.32	6	32696074	MHC	TRNAI25			100189401			rs6457617-T	rs6457617	0	6457617		0	0.49	5E-75	74.30102999566398	 	   2.36	[1.97-2.84] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12q13.2	12	56076841	ERBB3	RPS26 - ERBB3	6231	2065		       32.62	        3.18	rs11171739-C	rs11171739	0	11171739	Intergenic	1	0.42	1E-11	11	 	   1.34	[1.17-1.54] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12q24.13	12	112049014	SH2B3,LNK,TRAFD1,PTPN11	NAA25			80018			rs17696736-G	rs17696736	0	17696736	intron	0	0.42	2E-14	13.69897000433602		   1.34	[1.16-1.53] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	16p13.13	16	11086016	KIAA0350	CLEC16A			23274			rs12708716-A	rs12708716	0	12708716	intron	0	0.65	5E-7	6.30102999566398	 	   1.19	[0.97-1.45] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12p13.31	12	9703362	NR	CLECL1			160365			rs11052552-G	rs11052552	0	11052552	intron	0	0.49	7E-7	6.154901959985743		   1.49	[1.28-1.73] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	4q27	4	122408207	NR	ADAD1			132612			rs17388568-A	rs17388568	0	17388568	intron	0	0.26	3E-6	5.522878745280337	 	   1.26	[1.11-1.42] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	4q27	4	122277280	NR	KIAA1109			84162			rs6534347-A	rs6534347	0	6534347	intron	0	0.35	2E-6	5.698970004336018	 	   1.30	[1.10-1.55] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12p13.31	12	9681032	NR	CLEC2D			29121			rs3764021-C	rs3764021	0	3764021	cds-synon	0	0.47	5E-8	7.30102999566398	 	   1.57	[1.38-1.79] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	5q31.1	5	133293192	NR	FSTL4			23105			rs17166496-G	rs17166496	0	17166496	intron	0	0.61	5E-6	5.301029995663981	 	   1.30	[1.15-1.47] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	1p13.2	1	113761186	PTPN22	PHTF1			10745			rs6679677-A	rs6679677	0	6679677	nearGene-5	0	0.10	5E-26	25.30102999566398		   1.82	[1.59-2.09] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	6p21.32	6	32636595	MHC	HLA-DQA1			3117			rs9272346-G	rs9272346	0	9272346	nearGene-5	0	0.61	5E-134	133.301029995664	 	   5.49	[4.83-6.24] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	6p22.3	6	20717024	CDKAL1	CDKAL1			54901			rs9465871-C	rs9465871	0	9465871	intron	0	0.18	3E-7	6.522878745280337	 	   1.18	[1.04-1.34] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	16q12.2	16	53786615	FTO	FTO			79068			rs9939609-A	rs9939609	0	9939609	intron	0	0.40	2E-7	6.698970004336019	 	   1.34	[1.17-1.52] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	3p14.3	3	55279372	NR	LRTM1 - WNT5A	57408	7474		      312.28	      186.34	rs358806-?	rs358806	0	358806	Intergenic	1	0.80	3E-6	5.522878745280337	 	   1.16	[1.03-1.33] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	12q21.1	12	71183321	NR	TSPAN8 - LGR5	7103	8549		       25.32	      255.83	rs1495377-G	rs1495377	0	1495377	Intergenic	1	0.50	7E-6	5.154901959985742		   1.28	[1.11-1.49] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	12q13.12	12	50963759	NR	HIGD1C			613227			rs12304921-G	rs12304921	0	12304921	intron	0	0.15	7E-6	5.154901959985742		   2.50	[1.53-4.09] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	4q27	4	121744359	NR	ANXA5 - TMEM155	308	132332		       47.37	       14.57	rs7659604-T	rs7659604	0	7659604	Intergenic	1	0.38	9E-6	5.045757490560675	 	   1.35	[1.19-1.54] 	Affymetrix[469,557]	N
11/25/2008	17554300	WTCCC	06/07/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17554300?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	10q25.2	10	112996282	TCF7L2	TCF7L2			6934			rs4506565-T	rs4506565	0	4506565	intron	0	0.32	5E-12	11.30102999566398	 	   1.36	[1.20-1.54] 	Affymetrix[469,557]	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	1q31.2	1	191590226	Intergenic	HNRNPA1P46 - RGS18	100421399	64407		      443.21	      568.24	rs10801047-?	rs10801047	0	10801047	Intergenic	1	0.08	3E-8	7.522878745280337	 	   1.47	[1.22-1.76] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	3p21.31	3	49664550	MST1	BSN			8927			rs9858542-?	rs9858542	0	9858542	cds-synon	0	0.29	5E-8	7.30102999566398	 	   1.17	[1.14-1.31] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	5q33.1	5	150843825	IRGM	SMIM3 - IRGM	85027	345611		       47.09	        2.70	rs13361189-?	rs13361189	0	13361189	Intergenic	1	0.08	2E-10	9.698970004336017	 	   1.38	[1.15-1.66] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	10q24.2	10	99528007	NKX2-3	LOC101927324			101927324			rs10883365-?	rs10883365	0	10883365	ncRNA	0	0.48	4E-10	9.397940008672037	 	   1.18	[1.05-1.32] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	18p11.21	18	12779948	PTPN2	CEP76 - PTPN2	79959	5771		       77.17	        5.53	rs2542151-?	rs2542151	0	2542151	Intergenic	1	0.18	3E-8	7.522878745280337	 	   1.15	[1.00-1.32] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	21q22.2	21	38919816	Intergenic	RPSAP64 - RPL23AP12	100873797	391282		       24.62	      207.74	rs2836754-?	rs2836754	0	2836754	Intergenic	1	0.35	5E-7	6.30102999566398	 	   1.15	[1.03-1.28] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	1q24.3	1	172929237	Intergenic	AIMP1P2 - TNFSF18	100873064	8995		       42.98	      111.98	rs12035082-?	rs12035082	0	12035082	Intergenic	1	0.40	2E-7	6.698970004336019	 	   1.14	[1.02-1.27] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	5q33.3	5	159395637	IL12B	RNU4ATAC2P - ADRA1B	100873889	147		       77.47	      521.10	rs6887695-?	rs6887695	0	6887695	Intergenic	1	0.32	9E-6	5.045757490560675	 	   1.26	[1.12-1.41] 	see WTCCC	N
11/25/2008	17554261	Parkes M	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554261?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	5p13.1	5	40437846	Intergenic	LINC00603 - PTGER4	102467077	5734		      384.52	      242.08	rs9292777-?	rs9292777	0	9292777	Intergenic	1	0.40	3E-18	17.52287874528034	 	   1.34	[1.20-1.50] 	see WTCCC	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	12q24.13	12	112049014	C12orf30	NAA25			80018			rs17696736-G	rs17696736	0	17696736	intron	0	0.42	2E-16	15.69897000433602	 	   1.22	[1.15-1.28] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	12q13.2	12	56088396	ERBB3	ERBB3			2065			rs2292239-A	rs2292239	0	2292239	intron	0	0.34	2E-20	19.69897000433602	 	   1.28	[1.21-1.35] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	16p13.13	16	11086016	KIAA0350	CLEC16A			23274			rs12708716-A	rs12708716	0	12708716	intron	0	0.68	3E-18	17.52287874528034	 	   1.23	[1.16-1.30] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	18p11.21	18	12779948	PTPN2	CEP76 - PTPN2	79959	5771		       77.17	        5.53	rs2542151-C	rs2542151	0	2542151	Intergenic	1	0.16	1E-14	14	 	   1.30	[1.22-1.40] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	18q22.2	18	69864406	CD226	CD226			10666			rs763361-A	rs763361	0	763361	missense	0	0.47	1E-8	8	 	   1.16	[1.10-1.22] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	2q11.2	2	100208905	AFF3, LOC150577	LINC01104			150577			rs9653442-G	rs9653442	0	9653442	intron	0	0.46	5E-6	5.301029995663981		   1.11	[1.05-1.17] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	1p13.2	1	113761186	PHTF1, PTPN22	PHTF1			10745			rs6679677-A	rs6679677	0	6679677	nearGene-5	0	0.10	8E-24	23.09691001300805	 	   1.89	[1.67-2.13] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	11p15.5	11	2148544	INS	IGF2;IGF2-AS;INS-IGF2			3481;51214;723961			rs3741208-T	rs3741208	0	3741208	intron;ncRNA;intron	0	0.38	2E-7	6.698970004336019	 	   1.25	[1.15-1.35] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	1p13.2	1	113834946	PTPN22	PTPN22;LOC101928822			26191;101928822			rs2476601-T	rs2476601	0	2476601	missense;intron	0	0.09	2E-80	79.69897000433602	 	   1.98	[1.82-2.15] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	2q24.2	2	162267541	IFIH1	IFIH1			64135			rs1990760-A	rs1990760	0	1990760	missense	0	0.60	2E-11	10.69897000433602	 	   1.18	[1.11-1.23] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	5p13.2	5	35910427	CAPSL	CAPSL			133690			rs1445898-G	rs1445898	0	1445898	missense	0	0.55	8E-6	5.096910013008055	 	   1.12	[1.06-1.19] 	Affymetrix 	N
11/25/2008	17554260	Todd JA	06/06/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17554260?ordinalpos=11&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	5p13.2	5	35874473	IL7R	IL7R			3575			rs6897932-G	rs6897932	0	6897932	missense	0	0.71	8E-6	5.096910013008055	 	   1.12	[1.06-1.19] 	Affymetrix 	N
11/25/2008	17529967	Easton DF	05/27/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17529967	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 cases,364 controls	26,646 cases,24,889 controls	10q26.13	10	121592803	FGFR2	FGFR2			2263			rs2981582-A	rs2981582	0	2981582	intron	0	0.38	2E-76	75.69897000433602		   1.26	[1.23-1.30] 	Perlegen[205,586]	N
11/25/2008	17529967	Easton DF	05/27/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17529967	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 cases,364 controls	26,646 cases,24,889 controls	16q12.1	16	52552429	TNRC9, LOC643714	CASC16			643714			rs3803662-T	rs3803662	0	3803662	ncRNA	0	0.25	1E-36	35.99999999999999		   1.20	[1.16-1.24] 	Perlegen[205,586]	N
11/25/2008	17529967	Easton DF	05/27/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17529967	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 cases,364 controls	26,646 cases,24,889 controls	5q11.2	5	56736057	MAP3K1	RPL26P19 - MAP3K1	441073	4214		      230.94	       79.02	rs889312-C	rs889312	0	889312	Intergenic	1	0.28	7E-20	19.15490195998574		   1.13	[1.10-1.16] 	Perlegen[205,586]	N
11/25/2008	17529967	Easton DF	05/27/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17529967	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 cases,364 controls	26,646 cases,24,889 controls	8q24.21	8	127343372	Intergenic	LOC101930033			101930033			rs13281615-C	rs13281615	0	13281615	intron	0	0.40	5E-12	11.30102999566398		   1.08	[1.05-1.11] 	Perlegen[205,586]	N
11/25/2008	17529967	Easton DF	05/27/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17529967	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 cases,364 controls	26,646 cases,24,889 controls	11p15.5	11	1887776	LSP1	LSP1;LOC102724536			4046;102724536			rs3817198-C	rs3817198	0	3817198	intron;UTR-3	0	0.30	3E-9	8.522878745280337		   1.07	[1.04-1.11] 	Perlegen[205,586]	N
11/25/2008	17529967	Easton DF	05/27/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17529967	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 cases,364 controls	26,646 cases,24,889 controls	5p12	5	45285616	Intergenic	HCN1			348980			rs981782-C	rs981782	0	981782	intron	0	0.53	9E-6	5.045757490560675	 	   1.04	[1.01-1.08] 	Perlegen[205,586]	N
11/25/2008	17529973	Hunter DJ	05/27/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17529973?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer.	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	874 European ancestry cases, 1,478 European ancestry controls, 302 Other ancestry cases, 594 Other ancestry controls	10q26.13	10	121586676	FGFR2	FGFR2			2263			rs1219648-G	rs1219648	0	1219648	intron	0	0.40	1E-10	10	 	   1.20	[1.07-1.42] 	Illumina[528,173]	N
11/25/2008	17529974	Stacey SN	05/27/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17529974?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer.	Breast cancer	1,599 European ancestry cases, 11,546 European ancestry controls	2,954 European ancestry cases, 5,967 European ancestry controls, Up to 561 Japanese ancestry cases, Up to 565 Japanese ancestry control, Up to 422 Afican American cases, Up to 448 African American controls, Up to 418 Hispanic cases, Up to 422 Hispanic controls, Up to 148 Other ancestry cases, Up to 293 Other ancestry controls	2q35	2	217041109	Intergenic	TNP1 - DIRC3	7141	729582		      181.05	      242.91	rs13387042-A	rs13387042	0	13387042	Intergenic	1	0.50	1E-13	13	 	   1.20	[1.14-1.26] 	Illumina[311,524]	N
11/25/2008	17529974	Stacey SN	05/27/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17529974?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer.	Breast cancer	1,599 European ancestry cases, 11,546 European ancestry controls	2,954 European ancestry cases, 5,967 European ancestry controls, Up to 561 Japanese ancestry cases, Up to 565 Japanese ancestry control, Up to 422 Afican American cases, Up to 448 African American controls, Up to 418 Hispanic cases, Up to 422 Hispanic controls, Up to 148 Other ancestry cases, Up to 293 Other ancestry controls	16q12.1	16	52552429	TNRC9	CASC16			643714			rs3803662-T	rs3803662	0	3803662	ncRNA	0	0.27	6E-19	18.22184874961635	 	   1.28	[1.21-1.35] 	Illumina[311,524]	N
11/25/2008	17505501	Kindmark A	05/15/2007	Pharmacogenomics J	http://www.ncbi.nlm.nih.gov/pubmed/17505501?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide pharmacogenetic investigation of a hepatic adverse event without clinical signs of immunopathology suggests an underlying immune pathogenesis.	Response to ximelagatran treatment	74 European ancestry cases, 130 European ancestry controls	10 cases, 16 controls	6p21.3			HLA-DRB1	 - 						DRB1*07	NR					NR	9E-6			   4.41	[2.20-8.87] 	Perlegen[~266,722]	N
11/25/2008	17486107	Baum AE	05/08/2007	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/17486107?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study implicates diacylglycerol kinase eta (DGKH) and several other genes in the etiology of bipolar disorder.	Bipolar disorder	461 European ancestry cases, 563 European ancestry controls	772 European ancestry cases, 876 European ancestry controls	13q14.11	13	42079301	DGKH	DGKH			160851			rs1012053-A	rs1012053	0	1012053	intron	0	0.84	2E-8	7.698970004336018	 	   1.59	[1.35-1.87] 	Illumina [555,235](pooled)	N
11/25/2008	17434096	Matarin M	05/06/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17434096?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	259 European ancestry cases, 269 European ancestry controls	NA	6q21	6	106539495	AIM1	AIM1			202			rs783396-?	rs783396	0	783396	missense	0	0.90	9E-6	5.045757490560675	 	   2.17	[1.47-3.13] 	Illumina[408,803]	N
11/25/2008	17434096	Matarin M	05/06/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17434096?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	259 European ancestry cases, 269 European ancestry controls	NA	7p21.2	7	15703161	Intergenic	RPL36AP26 - ISPD	729909	729920		        1.38	      384.37	rs10486776-?	rs10486776	0	10486776	Intergenic	1	0.10	6E-6	5.221848749616356	 	   5.62	[2.66-11.9] 	Illumina[408,803]	N
11/25/2008	17434096	Matarin M	05/06/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17434096?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	259 European ancestry cases, 269 European ancestry controls	NA	18p11.21	18	11987273	IMPA2	IMPA2			3613			rs7506045-?	rs7506045	0	7506045	intron	0	0.10	7E-7	6.154901959985743		   5.39	[2.77-10.5] 	Illumina[408,803]	N
11/25/2008	17434096	Matarin M	05/06/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17434096?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	259 European ancestry cases, 269 European ancestry controls	NA	13q14.3	13	54006952	Intergenic	LINC00558 - LINC00458	100861552	100507428		      130.83	      117.37	rs9536591-?	rs9536591	0	9536591	Intergenic	1	0.10	6E-6	5.221848749616356	 	   1.92	[1.41-2.63] 	Illumina[408,803]	N
11/25/2008	17478679	Helgadottir A	05/03/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17478679?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A common variant on chromosome 9p21 affects the risk of myocardial infarction.	Myocardial infarction	1,607 European ancestry cases, 6,728 European ancestry controls	2,980 European ancestry cases, 6,309 European ancestry controls	9p21.3	9	22124478	CDKN2A,CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      111.94	      322.36	rs10757278-G	rs10757278	0	10757278	Intergenic	1	0.45	1E-20	20	 	   1.28	[1.22-1.35] 	Illumina[305,953]	N
11/25/2008	17478681	McPherson R	05/03/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17478681?ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A common allele on chromosome 9 associated with coronary heart disease.	Coronary heart disease	322 European ancestry cases, 312 European ancestry controls	3,984 European ancestry cases, 19,807 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Perlegen[72,864]	N
11/25/2008	17470457	Huentelman MJ	04/30/2007	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/17470457?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Calmodulin-binding transcription activator 1 (CAMTA1) alleles predispose human episodic memory performance.	Episodic memory	341 European ancestry individuals	472 European ancestry individuals	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[~502,627](pooled)	N
02/13/2009	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Triglycerides	Up to 5,217 European ancestry individuals	NR	19q13.32	19	44919689	APOE cluster	APOC1			341			rs4420638-G	rs4420638	0	4420638	nearGene-3	0	0.22	3E-13	12.52287874528034	(LDL)	   2.40	% [NR] of variance explained	Affymetrix [386,731]	N
02/13/2009	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Triglycerides	Up to 5,217 European ancestry individuals	NR	2p24.1	2	21009323	APOB	APOB			338			rs693-A	rs693	0	693	cds-synon	0	0.49	7E-7	6.154901959985743	(LDL)	NR	NR	Affymetrix [386,731]	N
02/13/2009	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Triglycerides	Up to 5,217 European ancestry individuals	NR	16q13	16	56961324	CETP	CETP			1071			rs1800775-C	rs1800775	0	1800775	nearGene-5	0	0.47	3E-13	12.52287874528034	(HDL)	   2.10	% [NR] of variance explained	Affymetrix [386,731]	N
02/13/2009	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Triglycerides	Up to 5,217 European ancestry individuals	NR	8p21.3	8	19962213	LPL	LPL			4023			rs328-T	rs328	0	328	STOP-GAIN	0	0.10	5E-7	6.30102999566398	(TG)	   1.00	% [NR] of variance explained	Affymetrix [386,731]	N
02/13/2009	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Triglycerides	Up to 5,217 European ancestry individuals	NR	16q13	16	56961324	CETP	CETP			1071			rs1800775-C	rs1800775	0	1800775	nearGene-5	0	0.44	3E-6	5.522878745280337	(apoA-1)	   1.60	% [NR] of variance explained	Affymetrix [386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	6p22.3	6	20661019	CDKAL1	CDKAL1			54901			rs7754840-C	rs7754840	0	7754840	intron	0	0.31	4E-11	10.39794000867204	(DGI+FUSION+WTCCC)	   1.12	[1.08-1.16] 	Affymetrix[386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	10q23.33	10	92703125	HHEX	HHEX - EXOC6	3087	54536		        7.47	      123.71	rs1111875-C	rs1111875	0	1111875	Intergenic	1	0.53	6E-10	9.221848749616356	(DGI+FUSION+WTCCC)	   1.13	[1.08-1.17] 	Affymetrix[386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.65	5E-8	7.30102999566398	(DGI+FUSION+WTCCC)	   1.12	[1.07-1.16] 	Affymetrix[386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	3p25.2	3	12351626	PPARG	PPARG			5468			rs1801282-C	rs1801282	0	1801282	missense	0	0.86	2E-6	5.698970004336018	(DGI+FUSION+WTCCC)	   1.14	[1.08-1.20] 	Affymetrix[386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	9p21.3	9	22134095	CDKN2A,CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      121.56	      312.75	rs10811661-T	rs10811661	0	10811661	Intergenic	1	0.83	5E-8	7.30102999566398		   1.20	[1.12-1.28] 	Affymetrix[386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	3q27.2	3	185793899	IGF2BP2	IGF2BP2			10644			rs4402960-T	rs4402960	0	4402960	intron	0	0.29	2E-9	8.698970004336019		   1.17	[1.11-1.23] 	Affymetrix[386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.26	2E-31	30.69897000433602		   1.38	[1.31-1.46] 	Affymetrix[386,731]	N
11/25/2008	17463246	Saxena R	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463246?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls 	11p15.1	11	17388025	KCNJ11	KCNJ11			3767			rs5219-T	rs5219	0	5219	missense	0	0.47	1E-7	7		   1.15	[1.09-1.21] 	Affymetrix[386,731]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	11p12	11	41893816	Intergenic	RPL9P23 - HNRNPKP3	100131020	399881		      354.83	     1367.69	rs9300039-C	rs9300039	0	9300039	Intergenic	1	0.89	6E-8	7.221848749616355		   1.48	[1.28-1.71] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.18	1E-8	8		   1.34	[1.21-1.49] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	3q27.2	3	185793899	IGF2BP2	IGF2BP2			10644			rs4402960-T	rs4402960	0	4402960	intron	0	0.30	9E-16	15.04575749056067	(DGI+FUSION+WTCCC)	   1.14	[1.11-1.18] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	6p22.3	6	20661019	CDKAL1	CDKAL1			54901			rs7754840-C	rs7754840	0	7754840	intron	0	0.36	4E-11	10.39794000867204	(DGI+FUSION+WTCCC)	   1.12	[1.08-1.16] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	9p21.3	9	22134095	CDKN2A,CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      121.56	      312.75	rs10811661-T	rs10811661	0	10811661	Intergenic	1	0.85	8E-15	14.09691001300805	(DGI+FUSION+WTCCC)	   1.20	[1.14-1.25] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	0.38	1E-12	12	(DGI+FUSION+WTCCC)	   1.17	[1.12-1.22] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	3p25.2	3	12351626	PPARG	PPARG			5468			rs1801282-C	rs1801282	0	1801282	missense	0	0.82	2E-6	5.698970004336018	(DGI+FUSION+WTCCC)	   1.14	[1.08-1.20] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.61	5E-8	7.30102999566398	(DGI+FUSION+WTCCC)	   1.12	[1.07-1.16] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	10q23.33	10	92703125	HHEX	HHEX - EXOC6	3087	54536		        7.47	      123.71	rs1111875-C	rs1111875	0	1111875	Intergenic	1	0.52	6E-10	9.221848749616356	(DGI+FUSION+WTCCC)	   1.13	[1.09-1.17] 	Illumina[315,635]	N
11/25/2008	17463248	Scott LJ	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463248?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	11p15.1	11	17388025	KCNJ11	KCNJ11			3767			rs5219-T	rs5219	0	5219	missense	0	0.46	7E-11	10.15490195998574	(DGI+FUSION+WTCCC)	   1.14	[1.10-1.19] 	Illumina[315,635]	N
11/25/2008	17460697	Steinthorsdottir V	04/26/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17460697?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A variant in CDKAL1 influences insulin response and risk of type 2 diabetes.	Type 2 diabetes	1,399 European ancestry cases, 5,275 European ancestry controls	2,174 European ancestry cases, 7,287 European ancestry controls	6p22.3	6	20679478	CDKAL1	CDKAL1			54901			rs7756992-G	rs7756992	0	7756992	intron	0	0.26	8E-9	8.096910013008056	 	   1.20	[1.13-1.27] 	Illumina[313,179 SNPs; 339,846 2-SNP haplotypes]	N
11/25/2008	17460697	Steinthorsdottir V	04/26/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17460697?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A variant in CDKAL1 influences insulin response and risk of type 2 diabetes.	Type 2 diabetes	1,399 European ancestry cases, 5,275 European ancestry controls	2,174 European ancestry cases, 7,287 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-?	rs7903146	0	7903146	intron	0	0.30	2E-10	9.698970004336017	 	   1.38	[NR] 	Illumina[313,179 SNPs; 339,846 2-SNP haplotypes]	N
11/25/2008	17460697	Steinthorsdottir V	04/26/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17460697?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A variant in CDKAL1 influences insulin response and risk of type 2 diabetes.	Type 2 diabetes	1,399 European ancestry cases, 5,275 European ancestry controls	2,174 European ancestry cases, 7,287 European ancestry controls	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.67	3E-6	5.522878745280337	 	   1.15	[1.08-1.22] 	Illumina[313,179 SNPs; 339,846 2-SNP haplotypes]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	11p15.1	11	17387083	KCNJ11	KCNJ11			3767			rs5215-C	rs5215	0	5215	missense	0	NR	5E-11	10.30102999566398	(DGI+FUSION+WTCCC)	   1.14	[1.10-1.19] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	3p25.2	3	12351626	PPARG	PPARG			5468			rs1801282-C	rs1801282	0	1801282	missense	0	NR	2E-6	5.698970004336018	(DGI+FUSION+WTCCC)	   1.14	[1.08-1.20] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	16q12.2	16	53782363	FTO	FTO			79068			rs8050136-A	rs8050136	0	8050136	intron	0	0.40	7E-14	13.15490195998574		   1.23	[1.18-1.32] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	6p22.3	6	20660803	CDKAL1	CDKAL1			54901			rs10946398-C	rs10946398	0	10946398	intron	0	0.32	1E-8	8		   1.16	[1.10-1.22] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	10q23.33	10	92705802	HHEX	HHEX - EXOC6	3087	54536		       10.15	      121.03	rs5015480-C	rs5015480	0	5015480	Intergenic	1	0.57	5E-6	5.301029995663981		   1.13	[1.07-1.19] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	9p21.3	9	22134095	CDKN2A, CDKN2B	UBA52P6 - DMRTA1	100130239	63951		      121.56	      312.75	rs10811661-T	rs10811661	0	10811661	Intergenic	1	0.83	5E-6	5.301029995663981		   1.19	[1.11-1.28] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	9p21.3	9	22029548	CDKN2A, CDKN2B	CDKN2B-AS1			100048912			rs564398-T	rs564398	0	564398	ncRNA	0	0.56	1E-6	5.999999999999999		   1.13	[1.08-1.19] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	3q27.2	3	185793899	IGF2BP2	IGF2BP2			10644			rs4402960-T	rs4402960	0	4402960	intron	0	0.32	9E-16	15.04575749056067	(DGI+FUSION+WTCCC)	   1.14	[1.11-1.18] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.69	5E-8	7.30102999566398	(DGI+FUSION+WTCCC)	   1.12	[1.07-1.16] 	Affymetrix[393,453]	N
11/25/2008	17463249	Zeggini E	04/26/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17463249?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls 	10q25.2	10	112994329	TCF7L2	TCF7L2			6934			rs7901695-C	rs7901695	0	7901695	intron	0	NR	1E-48	47.99999999999999	(DGI+FUSION+WTCCC)	   1.37	[1.31-1.43] 	Affymetrix[393,453]	N
11/25/2008	17435756	Rioux JD	04/15/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17435756?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 Other ancestry cases, 977 Other ancestry controls	530 Other ancestry trios, 353 Other ancestry cases, 207 Other ancestry controls	2q37.1	2	233274722	ATG16L1	ATG16L1;SCARNA5			55054;677775			rs2241880-G	rs2241880	0	2241880	missense;nearGene-5	0	0.55	1E-13	13	 	   1.45	[1.27-1.64] 	Illumina[304,413]	N
11/25/2008	17435756	Rioux JD	04/15/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17435756?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 Other ancestry cases, 977 Other ancestry controls	530 Other ancestry trios, 353 Other ancestry cases, 207 Other ancestry controls	10q21.2	10	62710915	Intergenic	ZNF365 - ALDH7A1P4	22891	544		       38.90	       30.08	rs224136-?	rs224136	0	224136	Intergenic	1	0.81	1E-10	10	 	   1.67	[NR] 	Illumina[304,413]	N
11/25/2008	17435756	Rioux JD	04/15/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17435756?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 Other ancestry cases, 977 Other ancestry controls	530 Other ancestry trios, 353 Other ancestry cases, 207 Other ancestry controls	16q12.1	16	50722970	CARD15	NOD2			64127			rs2076756-?	rs2076756	0	2076756	intron	0	0.24	7E-14	13.15490195998574	 	NR	NR	Illumina[304,413]	N
11/25/2008	17435756	Rioux JD	04/15/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17435756?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 Other ancestry cases, 977 Other ancestry controls	530 Other ancestry trios, 353 Other ancestry cases, 207 Other ancestry controls	1p31.3	1	67215986	IL23R	IL23R			149233			rs7517847-?	rs7517847	0	7517847	intron	0	0.40	3E-12	11.52287874528034	 	NR	NR	Illumina[304,413]	N
11/25/2008	17434869	Frayling TM	04/12/2007	Science	http://www.ncbi.nlm.nih.gov/pubmed/17434869?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity.	Body mass index	5,483 European ancestry type 2 diabetes cases, 5,174 European ancestry controls	19,424 European ancestry adults, 10,172 European ancestry children	16q12.2	16	53786615	FTO	FTO			79068			rs9939609-A	rs9939609	0	9939609	intron	0	0.39	2E-20	19.69897000433602	 	    .36	[NR] kg/m2 per copy in adults	Affymetrix[490,032]	N
11/25/2008	17407593	Uhl GR	04/03/2007	BMC Genet	http://www.ncbi.nlm.nih.gov/pubmed/17407593?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Molecular genetics of nicotine dependence and abstinence: whole genome association using 520,000 SNPs.	Nicotine dependence	134 European ancestry cases, 320 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[~520,000](pooled)	N
11/25/2008	17474819	Coon KD	04/01/2007	J Clin Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/17474819?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A high-density whole-genome association study reveals that APOE is the major susceptibility gene for sporadic late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	664 European ancestry cases, 422 European ancestry controls	NA	19q13.32	19	44919689	APOE	APOC1			341			rs4420638-?	rs4420638	0	4420638	nearGene-3	0	NR	1E-39	38.99999999999999	 	   4.01	[NR] 	Affymetrix[~502,627]	N
11/25/2008	17401366	Gudmundsson J	04/01/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17401366?ordinalpos=26&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24.	Prostate cancer	1,453 European ancestry cases, 3,064 European ancestry controls	1,210 European ancestry cases, 2,445 European ancestry controls; 373 African American cases, 372 African American controls	8q24.21	8	127112671	Intergenic	SRRM1P1 - CCAT1	401475	100507056		       24.14	       94.71	rs16901979-A	rs16901979	0	16901979	Intergenic	1	0.03 (EA)	1E-12	12	(EA)	   1.79	[1.53-2.11] (EA)	Illumina[316,515]	N
11/25/2008	17401366	Gudmundsson J	04/01/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17401366?ordinalpos=26&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24.	Prostate cancer	1,453 European ancestry cases, 3,064 European ancestry controls	1,210 European ancestry cases, 2,445 European ancestry controls; 373 African American cases, 372 African American controls	8q24.21			Intergenic	 - 						HapC	NR					0.02 (EA)	3E-15		(EA)	   2.10	[1.75-2.53] (EA)	Illumina[316,515]	N
11/25/2008	17401366	Gudmundsson J	04/01/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17401366?ordinalpos=26&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24.	Prostate cancer	1,453 European ancestry cases, 3,064 European ancestry controls	1,210 European ancestry cases, 2,445 European ancestry controls; 373 African American cases, 372 African American controls	8q24.21	8	127472793	Intergenic	CASC8			727677			rs1447295-A	rs1447295	0	1447295	intron	0	0.09	6E-18	17.22184874961635	 	   1.60	[1.43-1.77] 	Illumina[316,515]	N
11/25/2008	17395743	Hanson RL	04/01/2007	Diabetes	http://www.ncbi.nlm.nih.gov/pubmed/17395743?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of PVT1 as a candidate gene for end-stage renal disease in type 2 diabetes using a pooling-based genome-wide single nucleotide polymorphism association study.	End-stage renal disease	105 Pima Indian cases, 102 Pima indian controls	NA	8q24.21	8	128059915	PVT1	PVT1			5820			rs2648875-A	rs2648875	0	2648875	intron	0	0.53	2E-6	5.698970004336018	 	   2.97	[1.90-4.65] 	Affymetrix[115,352]	N
11/25/2008	17401363	Yeager M	04/01/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17401363?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of prostate cancer identifies a second risk locus at 8q24.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,124 European ancestry cases, 3,142 European ancestry controls	8q24.21	8	127401060	Intergenic	CCAT2;LOC101930033			101805488;101930033			rs6983267-G	rs6983267	0	6983267	ncRNA;intron	0	0.50	9E-13	12.04575749056067	 	   1.26	[1.13-1.41] 	Illumina[538,548]	N
11/25/2008	17401363	Yeager M	04/01/2007	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/17401363?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide association study of prostate cancer identifies a second risk locus at 8q24.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,124 European ancestry cases, 3,142 European ancestry controls	8q24.21	8	127472793	Intergenic	CASC8			727677			rs1447295-A	rs1447295	0	1447295	intron	0	0.11	2E-14	13.69897000433602	 	   1.43	[1.29-1.59] 	Illumina[538,548]	N
11/25/2008	17522711	Lencz T	03/20/2007	Mol Psychiatry	http://www.ncbi.nlm.nih.gov/pubmed/17522711?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Converging evidence for a pseudoautosomal cytokine receptor gene locus in schizophrenia.	Schizophrenia	178 European ancestry cases, 144 European ancestry controls	NA	Xp22.33,Yp11.32			CSF2RA,IL3RA	 - 						rs4129148-C	rs4129148		4129148			NR	4E-7			   3.23	[2.04-5.15] 	Affymetrix[439,511]	N
11/25/2008	17357082	Melquist S	03/08/2007	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/17357082?ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Identification of a novel risk locus for progressive supranuclear palsy by a pooled genomewide scan of 500,288 single-nucleotide polymorphisms.	Progressive supranuclear palsy	288 European ancestry cases, 344 European ancestry controls	213 European ancestry cases, 391 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[428,867](pooled)	N
11/25/2008	17447842	Libioulle C	03/05/2007	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/17447842	Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.	Crohn's disease	547 European ancestry cases, 928 European ancestry controls	1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios	5p13.1	5	40431081	Intergenic	LINC00603 - PTGER4	102467077	5734		      377.76	      248.85	rs1373692-?	rs1373692	0	1373692	Intergenic	1	0.59	2E-12	11.69897000433602	 	   1.46	[NR] 	Illumina[302,451]	N
11/25/2008	17447842	Libioulle C	03/05/2007	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/17447842	Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.	Crohn's disease	547 European ancestry cases, 928 European ancestry controls	1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios	1p31.3	1	67240275	IL23R	IL23R			149233			rs11209026-?	rs11209026	0	11209026	missense	0	0.92	2E-18	17.69897000433602	 	   2.92	[NR] 	Illumina[302,451]	N
11/25/2008	17447842	Libioulle C	03/05/2007	PLoS Genet	http://www.ncbi.nlm.nih.gov/pubmed/17447842	Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.	Crohn's disease	547 European ancestry cases, 928 European ancestry controls	1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios	16q12.1	16	50722863	CARD15	NOD2			64127			rs5743289-?	rs5743289	0	5743289	intron	0	NR	1E-6	5.999999999999999	 	NR	NR	Illumina[302,451]	N
11/25/2008	17362836	Schymick JC	02/20/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17362836?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	10q26.2	10	127476239	Intergenic	FAM196A - NPS	642938	594857		      280.07	       73.11	rs4363506-?	rs4363506	0	4363506	Intergenic	1	NR	7E-7	6.154901959985743		   1.90	[1.50-2.40] 	Illumina[549,062]	N
11/25/2008	17362836	Schymick JC	02/20/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17362836?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	2p24.2	2	18053180	Intergenic	KCNS3 - RDH14	3790	57665		      120.22	      501.54	rs16984239-?	rs16984239	0	16984239	Intergenic	1	NR	2E-6	5.698970004336018		   2.10	[1.50-3.00] 	Illumina[549,062]	N
11/25/2008	17362836	Schymick JC	02/20/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17362836?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	8q24.23	8	135859496	Intergenic	MAPRE1P1 - FLJ45872	80327	401478		      233.46	     1949.93	rs12680546-?	rs12680546	0	12680546	Intergenic	1	NR	3E-6	5.522878745280337	 	   1.67	[1.25-2.00] 	Illumina[549,062]	N
11/25/2008	17362836	Schymick JC	02/20/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17362836?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	20q13.2	20	52086094	ZFP64	ZFP64			55734			rs6013382-?	rs6013382	0	6013382	intron	0	NR	5E-6	5.301029995663981	 	   1.43	[1.11-1.67] 	Illumina[549,062]	N
11/25/2008	17362836	Schymick JC	02/20/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17362836?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	9q31.3	9	112087910	SUSD1	SUSD1			64420			rs2782931-?	rs2782931	0	2782931	intron	0	NR	6E-6	5.221848749616356	 	   1.11	[0.91-1.43] 	Illumina[549,062]	N
11/25/2008	17362836	Schymick JC	02/20/2007	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17362836?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	4q31.3	4	152972202	KIAA1727	FHDC1			85462			rs11099864-?	rs11099864	0	11099864	intron	0	NR	9E-6	5.045757490560675		   1.00	[0.80-1.40] 	Illumina[549,062]	N
11/25/2008	17293876	Sladek R	02/11/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17293876?ordinalpos=24&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel risk loci for type 2 diabetes.	Type 2 diabetes	661 European ancestry cases, 614 European ancestry controls	2,617 European ancestry cases, 2,894 European ancestry controls	10q23.33	10	92703125	HHEX	HHEX - EXOC6	3087	54536		        7.47	      123.71	rs1111875-G	rs1111875	0	1111875	Intergenic	1	0.60	3E-6	5.522878745280337		   1.19	[0.82-1.56] 	Illumina [392,935]	N
11/25/2008	17293876	Sladek R	02/11/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17293876?ordinalpos=24&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel risk loci for type 2 diabetes.	Type 2 diabetes	661 European ancestry cases, 614 European ancestry controls	2,617 European ancestry cases, 2,894 European ancestry controls	8q24.11	8	117172544	SLC30A8	SLC30A8			169026			rs13266634-C	rs13266634	0	13266634	missense	0	0.70	6E-8	7.221848749616355		   1.18	[0.69-1.67] 	Illumina [392,935]	N
11/25/2008	17293876	Sladek R	02/11/2007	Nature	http://www.ncbi.nlm.nih.gov/pubmed/17293876?ordinalpos=24&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies novel risk loci for type 2 diabetes.	Type 2 diabetes	661 European ancestry cases, 614 European ancestry controls	2,617 European ancestry cases, 2,894 European ancestry controls	10q25.2	10	112998590	TCF7L2	TCF7L2			6934			rs7903146-T	rs7903146	0	7903146	intron	0	0.30	2E-34	33.69897000433602		   1.65	[1.28, 2.02] 	Illumina [392,935]	N
11/25/2008	17223258	Spinola M	01/16/2007	Cancer Lett	http://www.ncbi.nlm.nih.gov/pubmed/17223258	Genome-wide single nucleotide polymorphism analysis of lung cancer risk detects the KLF6 gene.	Lung cancer	338 European ancestry lung adenocarcinoma cases, 335 European ancestry controls	265 European ancestry non-small cell lung carcinoma cases, 356 European ancestry controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix [~116,204](pooled)	N
11/25/2008	17158188	Bierut LJ	12/07/2006	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/17158188?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Nicotine dependence	482 European ancestry cases, 466 European ancestry controls	568 European ancestry cases, 413 European ancestry controls	21q22.2	21	39008323	NR	LOC102724740			102724740			rs2836823-T	rs2836823	0	2836823	intron	0	0.40	2E-6	5.698970004336018	 	   1.46	[1.23-1.73] 	Perlegen[2.4 million] (pooled)	N
11/25/2008	17158188	Bierut LJ	12/07/2006	Hum Mol Genet	http://www.ncbi.nlm.nih.gov/pubmed/17158188?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Nicotine dependence	482 European ancestry cases, 466 European ancestry controls	568 European ancestry cases, 413 European ancestry controls	10q21.3	10	66881193	CTNNA3	CTNNA3			29119			rs4142041-G	rs4142041	0	4142041	intron	0	0.34	6E-6	5.221848749616356	 	   1.14	[0.97-1.35] 	Perlegen[2.4 million] (pooled)	N
11/25/2008	17099884	Liu QR	12/05/2006	Am J Med Genet B Neuropsychiatr Genet	http://www.ncbi.nlm.nih.gov/pubmed/17099884?ordinalpos=7&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Addiction molecular genetics: 639,401 SNP whole genome association identifies many "cell adhesion" genes.	Addiction	560 African American cases, 360 African American controls, 420 European ancestry cases, 680 European ancestry controls	NA	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[639,401]	N
11/25/2008	17068223	Duerr RH	10/26/2006	Science	http://www.ncbi.nlm.nih.gov/pubmed/17068223?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.	Inflammatory bowel disease	547 European ancestry cases, 548 European ancestry controls	1,151 Other ancestry cases from 595 families, 433 Other ancestry controls	16q12.1	16	50722970	CARD15	NOD2			64127			rs2076756-?	rs2076756	0	2076756	intron	0	NR	5E-10	9.301029995663981	 	NR	NR	Illumina[308,332]	N
11/25/2008	17053149	Papassotiropoulos A	10/20/2006	Science	http://www.ncbi.nlm.nih.gov/pubmed/17053149?ordinalpos=4&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Common Kibra alleles are associated with human memory performance.	Memory performance	341 European ancestry individuals	662 European ancestry individuals, 18 individuals of Hispanic, African American, Native-American, and Asian ancestries	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[178,390](pooled)	N
11/25/2008	17053108	Dewan A	10/19/2006	Science	http://www.ncbi.nlm.nih.gov/pubmed/17053108?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	HTRA1 promoter polymorphism in wet age-related macular degeneration.	Age-related macular degeneration (wet)	96 Southeast Asian ancestry cases, 130 Southeast Asian ancestry controls	NA	10q26.13	10	122461028	HTRA1	HTRA1			5654			rs11200638-A	rs11200638	0	11200638	nearGene-5	0	NR	8E-12	11.09691001300806		   1.60	[0.71-3.61] 	Affymetrix[97,824]	N
11/25/2008	17052657	Fung HC	09/28/2006	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17052657?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data.	Parkinson's disease	267 European ancestry cases, 270 European ancestry controls	NA	11q14.1	11	84706803	DLG2	DLG2			1740			rs10501570-?	rs10501570	0	10501570	intron	0	NR	7E-6	5.154901959985742		   5.00	[2.00-12.50] 	Illumina[408,803]	N
11/25/2008	17052657	Fung HC	09/28/2006	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17052657?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data.	Parkinson's disease	267 European ancestry cases, 270 European ancestry controls	NA	4q13.2	4	67581531	BRDG1	STAP1			26228			rs2242330-?	rs2242330	0	2242330	intron	0	NR	2E-6	5.698970004336018	 	   2.00	[1.43-2.50] 	Illumina[408,803]	N
11/25/2008	17052657	Fung HC	09/28/2006	Lancet Neurol	http://www.ncbi.nlm.nih.gov/pubmed/17052657?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data.	Parkinson's disease	267 European ancestry cases, 270 European ancestry controls	NA	10q11.21	10	44665661	Intergenic	RPL9P21 - EIF2AP4	728374	100874401		      250.46	      140.78	rs1480597-?	rs1480597	0	1480597	Intergenic	1	NR	2E-6	5.698970004336018	 	   2.50	[1.67-3.33] 	Illumina[408,803]	N
11/25/2008	16648850	Arking DE	04/30/2006	Nat Genet	http://www.ncbi.nlm.nih.gov/pubmed/16648850?ordinalpos=10&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A common genetic variant in the NOS1 regulator NOS1AP modulates cardiac repolarization.	QT interval	100 European ancestry females > 445ms, 100 European ancestry females < 386ms	200 European ancestry females > 85th pct, 200 European ancestry females < 15th pct, 4,451 European ancestry individuals	1q23.3	1	162115895	NOS1AP	NOS1AP			9722			rs10494366-?	rs10494366	0	10494366	intron	0	0.36	1E-10	10	 	   4.90	- 7.90 [NR] msec difference between homozygotes	Affymetrix [88,500]	N
11/25/2008	16614226	Herbert A	04/14/2006	Science	http://www.ncbi.nlm.nih.gov/pubmed/16614226?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	A common genetic variant is associated with adult and childhood obesity.	Obesity	694 individuals from 288 families	3,213 European ancestry obese cases, 6,210 European ancestry non-obese controls, 229 individuals, 368 European ancestry trios, 361 African American obese cases, 505 African American non-obese controls	NR			NR	 - 						NR	NR					NR	NS		NS	NR	NR	Affymetrix[86,604]	N
11/25/2008	16252231	Maraganore DM	09/09/2005	Am J Hum Genet	http://www.ncbi.nlm.nih.gov/pubmed/16252231?ordinalpos=6&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum	High-resolution whole-genome association study of Parkinson disease.	Parkinson's disease	381 European ancestry cases, 363 European ancestry controls, 62 Other ancestry cases,79 Other ancestry controls, 1 Asian ancestry control from 443 sibships	269 European ancestry cases, 272 European ancestry controls, 62 Other ancestry cases, 60 Other ancesty controls, 1 Asian ancestry case	5p15.31	5	9332169	SEMA5A	SEMA5A			9037			rs7702187-?	rs7702187	0	7702187	intron	0	NR	8E-6	5.096910013008055	 	   1.74	[1.36-2.24] 	Perlegen [198,345]	N
11/25/2008	15761122	Klein RJ	03/10/2005	Science	http://www.ncbi.nlm.nih.gov/pubmed/15761122	Complement factor H polymorphism in age-related macular degeneration.	Age-related macular degeneration	96 European ancestry cases, 50 European ancestry controls	NA	1q31.3	1	196731921	CFH	CFH			3075			rs380390-C	rs380390	0	380390	intron	0	0.70 (HapMap CEU)	4E-8	7.397940008672037		   4.60	[2.0-11] 	Affymetrix[103,611]	N