10_32_S32_L001_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	10_32_S32_L001_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	574346
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	25

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	6118	1.0652115623683285	TruSeq Adapter, Index 7 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT	1124	0.19570084931382825	TruSeq Adapter, Index 7 (97% over 38bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	775	63.04847	1
GTCTGAA	805	60.268353	17
CTGCTTG	800	60.219646	59
TGCTTGA	795	60.201565	60
AGAGCAC	815	59.954067	8
CGTCTGA	810	59.896328	16
TCTGCTT	805	59.84561	58
TCTGAAC	805	59.837864	18
TGAACTC	805	59.837864	20
CTCCAGT	795	59.718735	24
AAGAGCA	825	59.647408	7
GCACACG	820	59.588493	11
ACGTCTG	815	59.528862	15
CTGAACT	810	59.468494	19
TTCTGCT	810	59.429222	57
GCTTGAA	795	59.348785	61
AGTCACG	800	59.34549	28
TCCAGTC	800	59.34549	25
CAGTCAC	800	59.34549	27
ACTCCAG	800	59.34549	23