FastQCFastQC Report
Wed 14 Mar 2018
11_37_S37_L001_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename11_37_S37_L001_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences695562
Sequences flagged as poor quality0
Sequence length35-76
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCCG455.456968E-1269.5912356
GGTCGCC455.456968E-1269.5812155
TGGTCGC455.456968E-1269.5611754
CTCGGTG455.456968E-1269.5311549
ATCTCGG455.456968E-1269.5211547
CTGTGTA600.063.70022639
AGTGTCT550.063.16015228
TCTCGGT501.4551915E-1162.57803348
CCTGTGT501.4551915E-1162.54203838
TCGCCTG501.4551915E-1162.53754435
GCCTGTG501.4551915E-1162.53754437
GTGTCTT501.4551915E-1162.5285529
TGTCTTC501.4551915E-1162.5285530
AGATCTC454.0927262E-1061.7832445
GCCGTAT553.8198777E-1156.95878259
TAGATCT553.8198777E-1156.8645844
CGCCTGT553.8198777E-1156.8523136
GAAGAGC700.054.588426
GTCTTCG609.094947E-1152.10712431
GAGCGTC750.050.949199