[2018-04-07 09:26:02,557] multiqc [DEBUG ] No MultiQC config found: /Users/sr320/anaconda/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml [2018-04-07 09:26:02,558] multiqc [DEBUG ] No MultiQC config found: /Users/sr320/.multiqc_config.yaml [2018-04-07 09:26:02,558] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-04-07 09:26:02,558] multiqc [DEBUG ] Command used: /Users/sr320/anaconda/bin/multiqc /Volumes/Serine/wd/18-04-07/fqc [2018-04-07 09:26:02,558] multiqc [DEBUG ] Could not connect to multiqc.info for version check [2018-04-07 09:26:02,558] multiqc [INFO ] This is MultiQC v1.0.dev0 [2018-04-07 09:26:02,558] multiqc [DEBUG ] Command : /Users/sr320/anaconda/bin/multiqc /Volumes/Serine/wd/18-04-07/fqc [2018-04-07 09:26:02,558] multiqc [DEBUG ] Working dir : /Volumes/Serine/wd/18-04-07 [2018-04-07 09:26:02,558] multiqc [INFO ] Template : default [2018-04-07 09:26:02,558] multiqc [INFO ] Searching '/Volumes/Serine/wd/18-04-07/fqc' [2018-04-07 09:26:02,558] multiqc [DEBUG ] Analysing modules: custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow [2018-04-07 09:26:02,558] multiqc [DEBUG ] Using temporary directory for creating report: /var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpomFGBo [2018-04-07 09:26:03,594] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found [2018-04-07 09:26:03,609] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:03,616] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:03,621] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2018-04-07 09:26:03,638] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:03,844] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:03,857] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,021] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,035] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,043] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,082] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,123] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,162] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,201] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,206] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,575] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,589] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,628] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,744] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,791] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,809] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,815] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,823] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:04,861] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,072] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. [2018-04-07 09:26:05,088] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,097] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,135] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,172] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,210] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,249] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,287] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:05,292] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:07,447] multiqc.modules.fastqc.fastqc [INFO ] Found 20 reports [2018-04-07 09:26:08,579] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/Volumes/Serine/wd/18-04-07/fqc',) [2018-04-07 09:26:08,582] multiqc [INFO ] Report : multiqc_report.html [2018-04-07 09:26:08,603] multiqc [INFO ] Data : multiqc_data [2018-04-07 09:26:08,603] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpomFGBo/multiqc_data/multiqc_fastqc.txt' to '/Volumes/Serine/wd/18-04-07/multiqc_data' [2018-04-07 09:26:08,604] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpomFGBo/multiqc_data/multiqc_general_stats.txt' to '/Volumes/Serine/wd/18-04-07/multiqc_data' [2018-04-07 09:26:08,604] multiqc [DEBUG ] Moving data file from '/var/folders/32/gn3lrlb11ds54r71vtpk47pm0000gn/T/tmpomFGBo/multiqc_data/multiqc_sources.txt' to '/Volumes/Serine/wd/18-04-07/multiqc_data' [2018-04-07 09:26:08,762] multiqc [INFO ] MultiQC complete