CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 107593 63291 62.96 170884 2 112151 58250 65.82 170401 3 116954 61163 65.66 178117 4 114660 57772 66.50 172432 5 114964 53848 68.10 168812 6 118082 52969 69.03 171051 7 119182 54513 68.62 173695 8 120583 53115 69.42 173698 9 118781 52987 69.15 171768 10 118690 52210 69.45 170900 11 121037 52725 69.66 173762 12 119685 52163 69.65 171848 13 120682 53453 69.30 174135 14 119796 50441 70.37 170237 15 121982 50777 70.61 172759 16 120954 51491 70.14 172445 17 120350 51763 69.92 172113 18 121930 51117 70.46 173047 19 121843 51499 70.29 173342 20 123780 50280 71.11 174060 21 122764 51611 70.40 174375 22 122336 52667 69.91 175003 23 121410 50749 70.52 172159 24 123756 52367 70.27 176123 25 121827 51711 70.20 173538 26 121660 52301 69.94 173961 27 125414 51196 71.01 176610 28 125176 51143 70.99 176319 29 125175 51115 71.01 176290 30 126412 50839 71.32 177251 31 124286 51298 70.78 175584 32 125015 50488 71.23 175503 33 125983 50304 71.46 176287 34 126463 50931 71.29 177394 35 126352 50370 71.50 176722 36 126384 51383 71.10 177767 37 124384 50913 70.96 175297 38 121923 51744 70.21 173667 39 122768 49483 71.27 172251 40 122302 50078 70.95 172380 41 121913 49480 71.13 171393 42 121612 48934 71.31 170546 43 122169 49687 71.09 171856 44 120766 48386 71.39 169152 45 119713 48310 71.25 168023 46 118401 48384 70.99 166785 47 116408 47342 71.09 163750 48 116852 47240 71.21 164092 49 115034 46718 71.12 161752 50 113913 46410 71.05 160323 51 114437 46266 71.21 160703 52 113690 46667 70.90 160357 53 113449 45953 71.17 159402 54 110720 46082 70.61 156802 55 109130 45210 70.71 154340 56 107934 44439 70.84 152373 57 107550 44033 70.95 151583 58 105537 44389 70.39 149926 59 104437 43396 70.65 147833 60 103377 43632 70.32 147009 61 101970 43196 70.24 145166 62 100274 42056 70.45 142330 63 99631 42420 70.14 142051 64 97708 41607 70.13 139315 65 96484 41772 69.79 138256 66 95641 41561 69.71 137202 67 95105 41100 69.82 136205 68 93549 40262 69.91 133811 69 92728 40401 69.65 133129 70 90339 40310 69.15 130649 71 88167 38926 69.37 127093 72 87598 38661 69.38 126259 73 86645 38596 69.18 125241 74 84871 38551 68.76 123422 75 83649 37811 68.87 121460 76 82446 37721 68.61 120167 77 80503 36609 68.74 117112 78 78989 36236 68.55 115225 79 78358 36121 68.45 114479 80 76015 35040 68.45 111055 81 74263 35053 67.93 109316 82 72509 33731 68.25 106240 83 69818 31639 68.82 101457 84 62334 26605 70.09 88939 85 49697 19756 71.55 69453 86 13537 13236 50.56 26773 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19597 266830 6.84 286427 2 22474 272546 7.62 295020 3 13837 270555 4.87 284392 4 13667 276823 4.70 290490 5 12145 263553 4.41 275698 6 10898 261213 4.00 272111 7 10581 260313 3.91 270894 8 9989 264209 3.64 274198 9 11035 260252 4.07 271287 10 9875 263271 3.62 273146 11 11007 267151 3.96 278158 12 9939 263588 3.63 273527 13 10796 263876 3.93 274672 14 11988 271937 4.22 283925 15 9612 267203 3.47 276815 16 11117 269063 3.97 280180 17 9119 273304 3.23 282423 18 8935 268321 3.22 277256 19 9374 272416 3.33 281790 20 9144 275137 3.22 284281 21 9431 273751 3.33 283182 22 9700 274515 3.41 284215 23 8504 277056 2.98 285560 24 11148 272962 3.92 284110 25 9408 278348 3.27 287756 26 10314 273624 3.63 283938 27 9791 278622 3.39 288413 28 8904 280107 3.08 289011 29 10898 281948 3.72 292846 30 9165 275510 3.22 284675 31 9185 277659 3.20 286844 32 8731 278044 3.04 286775 33 10360 273320 3.65 283680 34 8871 275306 3.12 284177 35 8795 279703 3.05 288498 36 9527 275747 3.34 285274 37 9443 275647 3.31 285090 38 8981 276572 3.15 285553 39 9655 271940 3.43 281595 40 9041 271180 3.23 280221 41 8529 276231 3.00 284760 42 8243 270732 2.95 278975 43 8265 271258 2.96 279523 44 8075 267896 2.93 275971 45 8183 265694 2.99 273877 46 8017 263588 2.95 271605 47 8325 267036 3.02 275361 48 7576 259779 2.83 267355 49 7984 257941 3.00 265925 50 7447 258370 2.80 265817 51 7887 255388 3.00 263275 52 7587 252859 2.91 260446 53 6973 255144 2.66 262117 54 7489 249430 2.91 256919 55 7089 247636 2.78 254725 56 6301 247669 2.48 253970 57 6399 240802 2.59 247201 58 6848 238196 2.79 245044 59 6148 238812 2.51 244960 60 5877 235026 2.44 240903 61 7084 232506 2.96 239590 62 5836 230585 2.47 236421 63 5784 227320 2.48 233104 64 6423 223733 2.79 230156 65 5813 221842 2.55 227655 66 5586 218606 2.49 224192 67 5777 215682 2.61 221459 68 5430 213279 2.48 218709 69 5759 210761 2.66 216520 70 5712 207810 2.68 213522 71 5715 207178 2.68 212893 72 5542 201602 2.68 207144 73 5475 199356 2.67 204831 74 5353 198061 2.63 203414 75 5383 193295 2.71 198678 76 5128 190390 2.62 195518 77 5194 187996 2.69 193190 78 5306 185564 2.78 190870 79 5441 183308 2.88 188749 80 5377 183621 2.85 188998 81 5290 175614 2.92 180904 82 5444 171343 3.08 176787 83 5614 159458 3.40 165072 84 5641 139741 3.88 145382 85 4790 83380 5.43 88170 86 2023 62543 3.13 64566 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 135170 902086 13.03 1037256 2 142149 879604 13.91 1021753 3 135180 877722 13.35 1012902 4 125564 863253 12.70 988817 5 127474 864377 12.85 991851 6 126891 864469 12.80 991360 7 116971 847303 12.13 964274 8 119297 845430 12.37 964727 9 114593 857780 11.78 972373 10 109015 865441 11.19 974456 11 116692 876065 11.75 992757 12 122179 885197 12.13 1007376 13 112681 888908 11.25 1001589 14 118754 896334 11.70 1015088 15 115512 912378 11.24 1027890 16 112803 906237 11.07 1019040 17 121756 905592 11.85 1027348 18 121067 901582 11.84 1022649 19 114161 908102 11.17 1022263 20 118397 906469 11.55 1024866 21 112411 908942 11.01 1021353 22 109112 900644 10.81 1009756 23 103194 895515 10.33 998709 24 103286 888323 10.42 991609 25 98640 890103 9.98 988743 26 100648 885661 10.20 986309 27 96960 909871 9.63 1006831 28 88974 895660 9.04 984634 29 93880 886221 9.58 980101 30 93740 891114 9.52 984854 31 87052 892716 8.88 979768 32 87091 892494 8.89 979585 33 85512 885497 8.81 971009 34 78784 881671 8.20 960455 35 76261 881691 7.96 957952 36 75198 880960 7.86 956158 37 72601 877006 7.65 949607 38 73004 872089 7.72 945093 39 73903 865454 7.87 939357 40 68897 856289 7.45 925186 41 68117 857559 7.36 925676 42 67349 857393 7.28 924742 43 62308 850391 6.83 912699 44 61192 849252 6.72 910444 45 59414 843117 6.58 902531 46 53807 825635 6.12 879442 47 53721 814686 6.19 868407 48 52844 820846 6.05 873690 49 47835 798257 5.65 846092 50 47858 791790 5.70 839648 51 48352 784022 5.81 832374 52 46072 776009 5.60 822081 53 43347 775702 5.29 819049 54 39610 763361 4.93 802971 55 40020 760600 5.00 800620 56 36616 747169 4.67 783785 57 37875 736706 4.89 774581 58 36137 729293 4.72 765430 59 33295 725067 4.39 758362 60 33094 726561 4.36 759655 61 31470 706625 4.26 738095 62 33881 693450 4.66 727331 63 33428 691372 4.61 724800 64 30563 691301 4.23 721864 65 28493 683269 4.00 711762 66 30285 669721 4.33 700006 67 28337 658275 4.13 686612 68 26801 654052 3.94 680853 69 27185 638015 4.09 665200 70 24691 628362 3.78 653053 71 24693 617926 3.84 642619 72 24396 613080 3.83 637476 73 23662 604918 3.76 628580 74 25373 600524 4.05 625897 75 24601 591581 3.99 616182 76 25182 574639 4.20 599821 77 22715 568637 3.84 591352 78 23953 560240 4.10 584193 79 22727 550543 3.96 573270 80 24101 544611 4.24 568712 81 23275 542450 4.11 565725 82 24031 536110 4.29 560141 83 24281 524680 4.42 548961 84 23103 502376 4.40 525479 85 16651 451161 3.56 467812 86 8803 194059 4.34 202862 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47933 34748 57.97 82681 2 49912 31348 61.42 81260 3 51186 34020 60.07 85206 4 48889 28483 63.19 77372 5 47857 26471 64.39 74328 6 47437 25407 65.12 72844 7 47655 25350 65.28 73005 8 45964 24029 65.67 69993 9 45308 23012 66.32 68320 10 44586 23000 65.97 67586 11 44458 22033 66.86 66491 12 43431 21566 66.82 64997 13 42607 21572 66.39 64179 14 41789 20462 67.13 62251 15 41483 20186 67.27 61669 16 41067 20060 67.18 61127 17 40305 19499 67.40 59804 18 39291 19068 67.33 58359 19 38612 18966 67.06 57578 20 38455 18259 67.81 56714 21 38173 18415 67.46 56588 22 37152 18058 67.29 55210 23 35942 16865 68.06 52807 24 35999 16800 68.18 52799 25 35430 16636 68.05 52066 26 34478 15971 68.34 50449 27 34623 15575 68.97 50198 28 33898 15538 68.57 49436 29 33253 15352 68.41 48605 30 33022 14747 69.13 47769 31 32046 14382 69.02 46428 32 31613 14214 68.98 45827 33 31451 13478 70.00 44929 34 30946 13418 69.75 44364 35 30455 13299 69.61 43754 36 29880 12893 69.86 42773 37 29088 12338 70.22 41426 38 28256 12328 69.62 40584 39 27623 11846 69.99 39469 40 27412 11582 70.30 38994 41 26996 11212 70.66 38208 42 26229 11184 70.11 37413 43 26403 10972 70.64 37375 44 25376 10428 70.87 35804 45 24935 10427 70.51 35362 46 24593 10249 70.58 34842 47 23643 9712 70.88 33355 48 24148 9889 70.95 34037 49 22675 9324 70.86 31999 50 22449 9386 70.52 31835 51 21986 9127 70.66 31113 52 21829 8947 70.93 30776 53 21324 8969 70.39 30293 54 20377 8843 69.74 29220 55 20138 8295 70.83 28433 56 19646 8155 70.67 27801 57 19203 8022 70.53 27225 58 18823 7890 70.46 26713 59 18391 7748 70.36 26139 60 17881 7448 70.59 25329 61 17234 7271 70.33 24505 62 16892 7065 70.51 23957 63 16603 7002 70.34 23605 64 16293 6868 70.35 23161 65 15802 6633 70.43 22435 66 15571 6539 70.43 22110 67 15091 6310 70.52 21401 68 14592 6354 69.66 20946 69 14401 6021 70.52 20422 70 13997 5939 70.21 19936 71 13322 5750 69.85 19072 72 13084 5554 70.20 18638 73 12899 5614 69.68 18513 74 12592 5576 69.31 18168 75 12041 5260 69.60 17301 76 11837 5261 69.23 17098 77 11589 4968 69.99 16557 78 10965 4905 69.09 15870 79 11018 4958 68.97 15976 80 10332 4701 68.73 15033 81 10035 4650 68.34 14685 82 9728 4475 68.49 14203 83 8775 4191 67.68 12966 84 7069 3807 65.00 10876 85 3983 3431 53.72 7414 86 32 1971 1.60 2003 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10295 130174 7.33 140469 2 14208 130241 9.84 144449 3 6252 131800 4.53 138052 4 6839 136628 4.77 143467 5 5424 116601 4.44 122025 6 4959 112303 4.23 117262 7 4493 110762 3.90 115255 8 3887 110910 3.39 114797 9 3834 107646 3.44 111480 10 3639 104510 3.36 108149 11 3643 105164 3.35 108807 12 3351 102738 3.16 106089 13 3446 99699 3.34 103145 14 3819 100834 3.65 104653 15 3121 97799 3.09 100920 16 3047 96456 3.06 99503 17 2979 96161 3.00 99140 18 2814 92089 2.97 94903 19 2701 92695 2.83 95396 20 2571 91139 2.74 93710 21 2617 88837 2.86 91454 22 2471 86849 2.77 89320 23 2372 86525 2.67 88897 24 2782 84186 3.20 86968 25 2289 84739 2.63 87028 26 2246 81670 2.68 83916 27 2178 81093 2.62 83271 28 1978 79977 2.41 81955 29 2078 80186 2.53 82264 30 1746 75537 2.26 77283 31 1811 74929 2.36 76740 32 1754 74036 2.31 75790 33 2341 71212 3.18 73553 34 1543 70928 2.13 72471 35 1449 70734 2.01 72183 36 1407 68608 2.01 70015 37 1508 67744 2.18 69252 38 1358 66652 2.00 68010 39 1409 65374 2.11 66783 40 1297 63762 1.99 65059 41 1224 62833 1.91 64057 42 1352 61704 2.14 63056 43 1126 60656 1.82 61782 44 1085 59093 1.80 60178 45 1064 57794 1.81 58858 46 1007 56371 1.76 57378 47 1014 56043 1.78 57057 48 980 54007 1.78 54987 49 996 52882 1.85 53878 50 935 52642 1.75 53577 51 1020 50983 1.96 52003 52 938 49359 1.86 50297 53 1018 49255 2.02 50273 54 1606 47458 3.27 49064 55 870 46726 1.83 47596 56 792 46111 1.69 46903 57 847 43280 1.92 44127 58 809 43688 1.82 44497 59 803 42692 1.85 43495 60 797 41265 1.89 42062 61 870 40258 2.12 41128 62 745 39766 1.84 40511 63 694 38313 1.78 39007 64 855 37534 2.23 38389 65 691 36883 1.84 37574 66 910 35697 2.49 36607 67 702 34555 1.99 35257 68 626 34151 1.80 34777 69 586 33849 1.70 34435 70 633 33025 1.88 33658 71 597 31861 1.84 32458 72 563 30670 1.80 31233 73 563 30305 1.82 30868 74 505 29610 1.68 30115 75 525 28525 1.81 29050 76 524 28096 1.83 28620 77 519 27695 1.84 28214 78 538 26941 1.96 27479 79 462 26345 1.72 26807 80 467 26839 1.71 27306 81 430 24548 1.72 24978 82 463 23282 1.95 23745 83 403 22727 1.74 23130 84 365 21347 1.68 21712 85 288 19673 1.44 19961 86 70 14481 0.48 14551 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42524 432283 8.96 474807 2 52638 399241 11.65 451879 3 31844 397250 7.42 429094 4 30389 376300 7.47 406689 5 28985 370089 7.26 399074 6 25934 360313 6.71 386247 7 22984 342534 6.29 365518 8 22572 335765 6.30 358337 9 20827 336261 5.83 357088 10 19042 332402 5.42 351444 11 20022 330745 5.71 350767 12 18979 327278 5.48 346257 13 17274 322059 5.09 339333 14 17755 320598 5.25 338353 15 16499 318269 4.93 334768 16 16282 310948 4.98 327230 17 17378 306814 5.36 324192 18 15796 299813 5.00 315609 19 15245 295925 4.90 311170 20 15265 291405 4.98 306670 21 14133 284207 4.74 298340 22 13509 281647 4.58 295156 23 13088 276272 4.52 289360 24 12634 270866 4.46 283500 25 11302 266412 4.07 277714 26 11301 261693 4.14 272994 27 11004 263837 4.00 274841 28 9688 254611 3.67 264299 29 9855 250230 3.79 260085 30 9251 247794 3.60 257045 31 8456 244557 3.34 253013 32 8483 240673 3.40 249156 33 8432 236138 3.45 244570 34 8042 230806 3.37 238848 35 7722 228658 3.27 236380 36 7641 225714 3.27 233355 37 6977 221816 3.05 228793 38 6655 217053 2.97 223708 39 6684 213723 3.03 220407 40 6010 208048 2.81 214058 41 6059 204186 2.88 210245 42 5982 202298 2.87 208280 43 5904 198018 2.90 203922 44 5761 196118 2.85 201879 45 5468 193832 2.74 199300 46 5117 186952 2.66 192069 47 4815 180890 2.59 185705 48 4797 179963 2.60 184760 49 4511 172472 2.55 176983 50 4509 168370 2.61 172879 51 4828 164754 2.85 169582 52 4237 161807 2.55 166044 53 4454 158851 2.73 163305 54 4224 153979 2.67 158203 55 4177 153097 2.66 157274 56 3858 147940 2.54 151798 57 4086 142913 2.78 146999 58 3973 141219 2.74 145192 59 3711 138310 2.61 142021 60 3582 137505 2.54 141087 61 3518 131839 2.60 135357 62 3621 127925 2.75 131546 63 3457 126433 2.66 129890 64 3353 125393 2.60 128746 65 3176 122426 2.53 125602 66 3150 119135 2.58 122285 67 3103 115725 2.61 118828 68 2922 114643 2.49 117565 69 2956 109503 2.63 112459 70 2710 106081 2.49 108791 71 2623 103953 2.46 106576 72 2518 102139 2.41 104657 73 2469 99767 2.42 102236 74 2475 98063 2.46 100538 75 2514 96529 2.54 99043 76 2421 93060 2.54 95481 77 2338 90569 2.52 92907 78 2214 88402 2.44 90616 79 2089 86021 2.37 88110 80 2089 84179 2.42 86268 81 2128 83277 2.49 85405 82 1932 81882 2.31 83814 83 1855 80058 2.26 81913 84 1455 76114 1.88 77569 85 1015 72582 1.38 73597 86 330 54457 0.60 54787