zr2096_1_s1_R1_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7939368 lines in total Total number of methylation call strings processed: 15878736 Final Cytosine Methylation Report ================================= Total number of C's analysed: 134818960 Total methylated C's in CpG context: 11567126 Total methylated C's in CHG context: 884976 Total methylated C's in CHH context: 6648583 Total C to T conversions in CpG context: 5077028 Total C to T conversions in CHG context: 26418928 Total C to T conversions in CHH context: 84222319 C methylated in CpG context: 69.5% C methylated in CHG context: 3.2% C methylated in CHH context: 7.3%