CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 5 68.75 16 2 12 8 60.00 20 3 11 2 84.62 13 4 6 11 35.29 17 5 9 3 75.00 12 6 6 3 66.67 9 7 4 2 66.67 6 8 8 5 61.54 13 9 8 1 88.89 9 10 13 4 76.47 17 11 7 1 87.50 8 12 7 5 58.33 12 13 7 9 43.75 16 14 15 2 88.24 17 15 10 3 76.92 13 16 10 7 58.82 17 17 9 3 75.00 12 18 10 5 66.67 15 19 9 3 75.00 12 20 9 4 69.23 13 21 5 4 55.56 9 22 17 0 100.00 17 23 8 4 66.67 12 24 9 6 60.00 15 25 12 1 92.31 13 26 10 2 83.33 12 27 11 4 73.33 15 28 15 4 78.95 19 29 8 2 80.00 10 30 11 0 100.00 11 31 6 2 75.00 8 32 14 3 82.35 17 33 10 3 76.92 13 34 16 0 100.00 16 35 17 5 77.27 22 36 6 5 54.55 11 37 12 0 100.00 12 38 9 3 75.00 12 39 14 6 70.00 20 40 9 3 75.00 12 41 12 3 80.00 15 42 6 2 75.00 8 43 13 3 81.25 16 44 9 4 69.23 13 45 9 5 64.29 14 46 14 1 93.33 15 47 13 2 86.67 15 48 6 0 100.00 6 49 11 2 84.62 13 50 7 3 70.00 10 51 8 2 80.00 10 52 11 3 78.57 14 53 11 2 84.62 13 54 10 1 90.91 11 55 14 5 73.68 19 56 9 4 69.23 13 57 11 1 91.67 12 58 6 3 66.67 9 59 6 3 66.67 9 60 12 5 70.59 17 61 7 6 53.85 13 62 9 2 81.82 11 63 13 6 68.42 19 64 10 2 83.33 12 65 5 1 83.33 6 66 7 2 77.78 9 67 10 6 62.50 16 68 6 1 85.71 7 69 5 3 62.50 8 70 15 2 88.24 17 71 5 0 100.00 5 72 8 2 80.00 10 73 5 4 55.56 9 74 10 3 76.92 13 75 9 0 100.00 9 76 6 1 85.71 7 77 5 2 71.43 7 78 4 3 57.14 7 79 4 2 66.67 6 80 8 1 88.89 9 81 5 0 100.00 5 82 11 4 73.33 15 83 7 0 100.00 7 84 12 5 70.59 17 85 8 2 80.00 10 86 5 2 71.43 7 87 9 3 75.00 12 88 7 4 63.64 11 89 5 3 62.50 8 90 4 0 100.00 4 91 5 2 71.43 7 92 5 2 71.43 7 93 6 1 85.71 7 94 6 3 66.67 9 95 3 3 50.00 6 96 9 2 81.82 11 97 4 0 100.00 4 98 6 0 100.00 6 99 2 1 66.67 3 100 1 2 33.33 3 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 37 5.13 39 2 6 14 30.00 20 3 3 15 16.67 18 4 0 17 0.00 17 5 1 30 3.23 31 6 1 22 4.35 23 7 1 18 5.26 19 8 3 12 20.00 15 9 0 20 0.00 20 10 1 9 10.00 10 11 2 20 9.09 22 12 0 14 0.00 14 13 0 18 0.00 18 14 0 19 0.00 19 15 0 17 0.00 17 16 1 16 5.88 17 17 0 25 0.00 25 18 0 20 0.00 20 19 1 21 4.55 22 20 0 19 0.00 19 21 0 14 0.00 14 22 0 14 0.00 14 23 2 27 6.90 29 24 0 16 0.00 16 25 1 27 3.57 28 26 0 16 0.00 16 27 0 23 0.00 23 28 0 21 0.00 21 29 0 24 0.00 24 30 0 13 0.00 13 31 0 19 0.00 19 32 0 17 0.00 17 33 0 21 0.00 21 34 2 25 7.41 27 35 0 22 0.00 22 36 0 21 0.00 21 37 0 22 0.00 22 38 0 22 0.00 22 39 0 20 0.00 20 40 0 18 0.00 18 41 1 23 4.17 24 42 0 24 0.00 24 43 0 16 0.00 16 44 0 26 0.00 26 45 1 30 3.23 31 46 0 25 0.00 25 47 0 12 0.00 12 48 1 17 5.56 18 49 0 17 0.00 17 50 0 18 0.00 18 51 1 21 4.55 22 52 2 19 9.52 21 53 1 22 4.35 23 54 1 22 4.35 23 55 0 15 0.00 15 56 0 22 0.00 22 57 0 22 0.00 22 58 2 31 6.06 33 59 1 18 5.26 19 60 1 22 4.35 23 61 0 21 0.00 21 62 1 21 4.55 22 63 1 18 5.26 19 64 0 20 0.00 20 65 1 14 6.67 15 66 1 21 4.55 22 67 1 17 5.56 18 68 2 14 12.50 16 69 0 18 0.00 18 70 0 28 0.00 28 71 1 13 7.14 14 72 0 13 0.00 13 73 1 22 4.35 23 74 0 8 0.00 8 75 0 20 0.00 20 76 0 12 0.00 12 77 0 15 0.00 15 78 0 14 0.00 14 79 1 20 4.76 21 80 0 7 0.00 7 81 1 10 9.09 11 82 0 23 0.00 23 83 1 9 10.00 10 84 0 12 0.00 12 85 0 14 0.00 14 86 1 12 7.69 13 87 1 10 9.09 11 88 1 14 6.67 15 89 0 15 0.00 15 90 0 19 0.00 19 91 1 16 5.88 17 92 0 5 0.00 5 93 0 11 0.00 11 94 0 13 0.00 13 95 2 16 11.11 18 96 2 10 16.67 12 97 0 17 0.00 17 98 0 12 0.00 12 99 0 11 0.00 11 100 0 4 0.00 4 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 22 23 48.89 45 2 7 32 17.95 39 3 11 29 27.50 40 4 2 31 6.06 33 5 5 39 11.36 44 6 2 70 2.78 72 7 5 70 6.67 75 8 5 68 6.85 73 9 4 54 6.90 58 10 2 72 2.70 74 11 4 57 6.56 61 12 4 58 6.45 62 13 3 72 4.00 75 14 3 56 5.08 59 15 2 58 3.33 60 16 1 61 1.61 62 17 4 57 6.56 61 18 3 46 6.12 49 19 3 58 4.92 61 20 3 53 5.36 56 21 2 53 3.64 55 22 2 70 2.78 72 23 1 55 1.79 56 24 2 58 3.33 60 25 3 46 6.12 49 26 1 47 2.08 48 27 1 55 1.79 56 28 3 58 4.92 61 29 0 68 0.00 68 30 0 60 0.00 60 31 4 67 5.63 71 32 5 49 9.26 54 33 3 70 4.11 73 34 0 57 0.00 57 35 0 61 0.00 61 36 0 64 0.00 64 37 3 66 4.35 69 38 2 80 2.44 82 39 2 58 3.33 60 40 1 63 1.56 64 41 2 71 2.74 73 42 0 59 0.00 59 43 1 72 1.37 73 44 5 46 9.80 51 45 3 43 6.52 46 46 1 59 1.67 60 47 3 60 4.76 63 48 0 54 0.00 54 49 0 66 0.00 66 50 2 66 2.94 68 51 2 79 2.47 81 52 2 62 3.12 64 53 3 59 4.84 62 54 3 47 6.00 50 55 1 69 1.43 70 56 1 63 1.56 64 57 3 69 4.17 72 58 1 54 1.82 55 59 3 53 5.36 56 60 3 59 4.84 62 61 3 53 5.36 56 62 0 55 0.00 55 63 1 57 1.72 58 64 4 49 7.55 53 65 3 50 5.66 53 66 2 50 3.85 52 67 4 52 7.14 56 68 2 56 3.45 58 69 1 49 2.00 50 70 1 56 1.75 57 71 2 48 4.00 50 72 4 34 10.53 38 73 2 54 3.57 56 74 1 38 2.56 39 75 0 46 0.00 46 76 0 38 0.00 38 77 2 46 4.17 48 78 0 54 0.00 54 79 3 46 6.12 49 80 0 35 0.00 35 81 0 29 0.00 29 82 0 40 0.00 40 83 1 35 2.78 36 84 1 30 3.23 31 85 3 39 7.14 42 86 3 43 6.52 46 87 2 34 5.56 36 88 6 39 13.33 45 89 0 34 0.00 34 90 0 37 0.00 37 91 1 43 2.27 44 92 2 47 4.08 49 93 1 34 2.86 35 94 2 25 7.41 27 95 1 26 3.70 27 96 3 27 10.00 30 97 0 33 0.00 33 98 0 34 0.00 34 99 0 28 0.00 28 100 0 20 0.00 20 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 2 71.43 7 2 8 0 100.00 8 3 5 2 71.43 7 4 3 2 60.00 5 5 3 1 75.00 4 6 0 0 0 7 3 2 60.00 5 8 0 4 0.00 4 9 3 2 60.00 5 10 2 1 66.67 3 11 3 2 60.00 5 12 0 3 0.00 3 13 6 0 100.00 6 14 2 1 66.67 3 15 6 0 100.00 6 16 4 2 66.67 6 17 3 3 50.00 6 18 3 1 75.00 4 19 3 1 75.00 4 20 2 0 100.00 2 21 3 3 50.00 6 22 2 2 50.00 4 23 1 2 33.33 3 24 3 1 75.00 4 25 2 1 66.67 3 26 5 1 83.33 6 27 2 0 100.00 2 28 2 2 50.00 4 29 2 3 40.00 5 30 2 1 66.67 3 31 2 1 66.67 3 32 5 1 83.33 6 33 3 0 100.00 3 34 3 0 100.00 3 35 2 2 50.00 4 36 3 0 100.00 3 37 0 0 0 38 2 2 50.00 4 39 2 1 66.67 3 40 1 1 50.00 2 41 3 0 100.00 3 42 2 3 40.00 5 43 4 0 100.00 4 44 3 3 50.00 6 45 2 0 100.00 2 46 4 1 80.00 5 47 2 0 100.00 2 48 4 0 100.00 4 49 0 0 0 50 0 0 0 51 0 0 0 52 0 0 0 53 1 0 100.00 1 54 1 1 50.00 2 55 2 2 50.00 4 56 0 0 0 57 1 1 50.00 2 58 1 1 50.00 2 59 2 2 50.00 4 60 0 1 0.00 1 61 0 0 0 62 1 0 100.00 1 63 0 0 0 64 2 2 50.00 4 65 2 0 100.00 2 66 3 0 100.00 3 67 0 1 0.00 1 68 1 0 100.00 1 69 0 0 0 70 0 2 0.00 2 71 0 0 0 72 1 1 50.00 2 73 1 0 100.00 1 74 0 0 0 75 0 0 0 76 1 0 100.00 1 77 1 0 100.00 1 78 0 0 0 79 1 0 100.00 1 80 0 0 0 81 1 0 100.00 1 82 0 1 0.00 1 83 0 0 0 84 1 0 100.00 1 85 0 0 0 86 0 0 0 87 2 0 100.00 2 88 0 0 0 89 0 0 0 90 1 0 100.00 1 91 0 0 0 92 1 0 100.00 1 93 0 0 0 94 1 0 100.00 1 95 0 0 0 96 2 0 100.00 2 97 0 0 0 98 0 0 0 99 3 0 100.00 3 100 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 19 9.52 21 2 2 6 25.00 8 3 2 9 18.18 11 4 0 4 0.00 4 5 0 13 0.00 13 6 0 10 0.00 10 7 1 3 25.00 4 8 0 5 0.00 5 9 0 7 0.00 7 10 2 6 25.00 8 11 0 11 0.00 11 12 0 6 0.00 6 13 0 6 0.00 6 14 1 6 14.29 7 15 0 6 0.00 6 16 0 5 0.00 5 17 0 3 0.00 3 18 0 8 0.00 8 19 0 6 0.00 6 20 0 6 0.00 6 21 0 4 0.00 4 22 0 7 0.00 7 23 0 10 0.00 10 24 0 7 0.00 7 25 0 9 0.00 9 26 0 2 0.00 2 27 0 6 0.00 6 28 0 7 0.00 7 29 0 5 0.00 5 30 0 5 0.00 5 31 0 4 0.00 4 32 0 2 0.00 2 33 0 6 0.00 6 34 0 2 0.00 2 35 0 2 0.00 2 36 0 4 0.00 4 37 0 4 0.00 4 38 0 1 0.00 1 39 0 4 0.00 4 40 1 9 10.00 10 41 0 4 0.00 4 42 0 5 0.00 5 43 0 6 0.00 6 44 0 0 0 45 0 3 0.00 3 46 0 5 0.00 5 47 0 1 0.00 1 48 0 4 0.00 4 49 0 1 0.00 1 50 0 4 0.00 4 51 0 2 0.00 2 52 0 1 0.00 1 53 0 1 0.00 1 54 0 2 0.00 2 55 0 1 0.00 1 56 0 2 0.00 2 57 0 4 0.00 4 58 0 3 0.00 3 59 0 2 0.00 2 60 0 2 0.00 2 61 0 6 0.00 6 62 0 3 0.00 3 63 0 2 0.00 2 64 0 2 0.00 2 65 0 4 0.00 4 66 0 1 0.00 1 67 0 3 0.00 3 68 0 4 0.00 4 69 0 3 0.00 3 70 0 2 0.00 2 71 0 2 0.00 2 72 0 3 0.00 3 73 0 4 0.00 4 74 0 2 0.00 2 75 0 2 0.00 2 76 0 2 0.00 2 77 0 2 0.00 2 78 0 2 0.00 2 79 0 1 0.00 1 80 0 1 0.00 1 81 0 2 0.00 2 82 0 1 0.00 1 83 0 3 0.00 3 84 0 1 0.00 1 85 0 1 0.00 1 86 0 3 0.00 3 87 0 1 0.00 1 88 0 2 0.00 2 89 0 0 0 90 0 2 0.00 2 91 0 3 0.00 3 92 0 1 0.00 1 93 0 1 0.00 1 94 0 2 0.00 2 95 0 1 0.00 1 96 0 0 0 97 0 0 0 98 0 0 0 99 0 2 0.00 2 100 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7 9 43.75 16 2 4 11 26.67 15 3 7 13 35.00 20 4 6 16 27.27 22 5 3 18 14.29 21 6 0 19 0.00 19 7 1 28 3.45 29 8 1 29 3.33 30 9 1 23 4.17 24 10 5 23 17.86 28 11 1 25 3.85 26 12 0 20 0.00 20 13 0 19 0.00 19 14 0 19 0.00 19 15 1 18 5.26 19 16 2 21 8.70 23 17 1 26 3.70 27 18 0 21 0.00 21 19 0 20 0.00 20 20 0 20 0.00 20 21 1 11 8.33 12 22 1 13 7.14 14 23 2 16 11.11 18 24 1 12 7.69 13 25 0 15 0.00 15 26 3 12 20.00 15 27 0 13 0.00 13 28 1 9 10.00 10 29 0 13 0.00 13 30 0 12 0.00 12 31 1 14 6.67 15 32 0 18 0.00 18 33 0 17 0.00 17 34 0 13 0.00 13 35 0 21 0.00 21 36 0 20 0.00 20 37 0 10 0.00 10 38 0 8 0.00 8 39 0 8 0.00 8 40 0 10 0.00 10 41 0 15 0.00 15 42 0 13 0.00 13 43 0 15 0.00 15 44 0 7 0.00 7 45 0 8 0.00 8 46 0 11 0.00 11 47 0 10 0.00 10 48 0 11 0.00 11 49 0 10 0.00 10 50 0 12 0.00 12 51 1 10 9.09 11 52 0 13 0.00 13 53 0 10 0.00 10 54 1 4 20.00 5 55 0 8 0.00 8 56 0 17 0.00 17 57 0 4 0.00 4 58 0 12 0.00 12 59 0 10 0.00 10 60 0 9 0.00 9 61 0 8 0.00 8 62 0 15 0.00 15 63 0 6 0.00 6 64 0 6 0.00 6 65 1 3 25.00 4 66 0 9 0.00 9 67 0 7 0.00 7 68 0 8 0.00 8 69 0 10 0.00 10 70 0 7 0.00 7 71 0 9 0.00 9 72 0 3 0.00 3 73 0 8 0.00 8 74 0 6 0.00 6 75 0 6 0.00 6 76 0 6 0.00 6 77 0 9 0.00 9 78 0 6 0.00 6 79 0 5 0.00 5 80 0 3 0.00 3 81 0 5 0.00 5 82 0 8 0.00 8 83 0 3 0.00 3 84 0 2 0.00 2 85 0 4 0.00 4 86 0 6 0.00 6 87 0 4 0.00 4 88 0 4 0.00 4 89 0 4 0.00 4 90 0 0 0 91 0 0 0 92 0 4 0.00 4 93 0 3 0.00 3 94 0 3 0.00 3 95 0 3 0.00 3 96 0 7 0.00 7 97 0 5 0.00 5 98 0 3 0.00 3 99 0 4 0.00 4 100 0 3 0.00 3