CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 102391 60600 62.82 162991 2 106534 56217 65.46 162751 3 111537 59439 65.24 170976 4 108711 54920 66.44 163631 5 108336 51890 67.61 160226 6 111807 51441 68.49 163248 7 113101 52905 68.13 166006 8 112727 51232 68.75 163959 9 112553 50638 68.97 163191 10 112658 50722 68.95 163380 11 114225 50347 69.41 164572 12 113821 49647 69.63 163468 13 114075 50555 69.29 164630 14 114101 48913 69.99 163014 15 115301 49442 69.99 164743 16 115254 49946 69.77 165200 17 115217 50013 69.73 165230 18 116202 49508 70.12 165710 19 115588 49840 69.87 165428 20 117211 48528 70.72 165739 21 117570 50066 70.13 167636 22 117541 50748 69.84 168289 23 116498 48786 70.48 165284 24 118363 49732 70.41 168095 25 117087 50097 70.03 167184 26 116690 49114 70.38 165804 27 119327 49545 70.66 168872 28 118801 49360 70.65 168161 29 119601 48993 70.94 168594 30 121329 49053 71.21 170382 31 119506 49467 70.72 168973 32 119694 48712 71.07 168406 33 119816 48670 71.11 168486 34 119620 49348 70.79 168968 35 120758 48613 71.30 169371 36 121416 49293 71.12 170709 37 119219 49212 70.78 168431 38 116854 48248 70.78 165102 39 117442 47832 71.06 165274 40 117845 48115 71.01 165960 41 117237 47130 71.33 164367 42 117337 47204 71.31 164541 43 117719 47916 71.07 165635 44 116219 46844 71.27 163063 45 115516 46923 71.11 162439 46 114181 47065 70.81 161246 47 112166 45972 70.93 158138 48 112267 45993 70.94 158260 49 111175 45491 70.96 156666 50 109908 45245 70.84 155153 51 110667 45241 70.98 155908 52 109832 45554 70.68 155386 53 110056 44831 71.06 154887 54 106920 44854 70.45 151774 55 105738 44172 70.53 149910 56 104492 43513 70.60 148005 57 104420 43124 70.77 147544 58 102378 43219 70.32 145597 59 101405 42519 70.46 143924 60 100321 42667 70.16 142988 61 99157 42313 70.09 141470 62 97511 41255 70.27 138766 63 96897 41607 69.96 138504 64 95034 40800 69.96 135834 65 93893 40958 69.63 134851 66 92954 40726 69.53 133680 67 92414 40265 69.65 132679 68 90887 39544 69.68 130431 69 89973 39597 69.44 129570 70 87796 39457 68.99 127253 71 85840 38196 69.21 124036 72 85175 37888 69.21 123063 73 84405 37798 69.07 122203 74 82744 37772 68.66 120516 75 81609 37100 68.75 118709 76 80372 37032 68.46 117404 77 78559 35909 68.63 114468 78 77059 35562 68.42 112621 79 76477 35419 68.35 111896 80 74100 34381 68.31 108481 81 72439 34360 67.83 106799 82 70729 33157 68.08 103886 83 68235 31053 68.72 99288 84 60804 26138 69.94 86942 85 48551 19386 71.46 67937 86 13251 13022 50.44 26273 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16804 256687 6.14 273491 2 19099 261752 6.80 280851 3 11917 259273 4.39 271190 4 11543 266748 4.15 278291 5 10532 253711 3.99 264243 6 9648 251701 3.69 261349 7 9278 250750 3.57 260028 8 8660 254159 3.30 262819 9 8948 250370 3.45 259318 10 8461 252312 3.24 260773 11 8438 257362 3.17 265800 12 8294 254307 3.16 262601 13 8141 254492 3.10 262633 14 8525 261190 3.16 269715 15 7956 257461 3.00 265417 16 8064 258340 3.03 266404 17 7851 262483 2.90 270334 18 7762 258224 2.92 265986 19 7644 263155 2.82 270799 20 7965 265925 2.91 273890 21 7722 263250 2.85 270972 22 7987 262307 2.95 270294 23 7495 267491 2.73 274986 24 7878 263938 2.90 271816 25 7816 268748 2.83 276564 26 7744 264787 2.84 272531 27 7624 269208 2.75 276832 28 7382 268972 2.67 276354 29 8270 271143 2.96 279413 30 7837 266006 2.86 273843 31 7582 267158 2.76 274740 32 7426 268299 2.69 275725 33 7571 264464 2.78 272035 34 7451 265667 2.73 273118 35 7403 270451 2.66 277854 36 7420 267074 2.70 274494 37 7540 266800 2.75 274340 38 7332 267927 2.66 275259 39 7197 263739 2.66 270936 40 7202 262577 2.67 269779 41 7108 267282 2.59 274390 42 7027 262103 2.61 269130 43 7151 261208 2.66 268359 44 6910 260069 2.59 266979 45 6801 257660 2.57 264461 46 6749 255422 2.57 262171 47 7037 257463 2.66 264500 48 6548 252199 2.53 258747 49 6521 250426 2.54 256947 50 6359 250030 2.48 256389 51 6547 248251 2.57 254798 52 6579 245840 2.61 252419 53 6211 248342 2.44 254553 54 6220 242798 2.50 249018 55 6418 240680 2.60 247098 56 5759 240947 2.33 246706 57 5849 234058 2.44 239907 58 5914 232057 2.49 237971 59 5719 232240 2.40 237959 60 5580 228477 2.38 234057 61 5766 225982 2.49 231748 62 5509 224754 2.39 230263 63 5377 221348 2.37 226725 64 5636 217796 2.52 223432 65 5366 215958 2.42 221324 66 5243 213152 2.40 218395 67 5493 210071 2.55 215564 68 5173 207926 2.43 213099 69 5339 204860 2.54 210199 70 5395 202161 2.60 207556 71 5452 202015 2.63 207467 72 5302 196604 2.63 201906 73 5240 194317 2.63 199557 74 5151 193201 2.60 198352 75 5176 188607 2.67 193783 76 4956 185482 2.60 190438 77 5035 183373 2.67 188408 78 5130 180538 2.76 185668 79 5229 179000 2.84 184229 80 5206 179413 2.82 184619 81 5111 171399 2.90 176510 82 5218 166888 3.03 172106 83 5395 155714 3.35 161109 84 5440 136601 3.83 142041 85 4618 81405 5.37 86023 86 1899 61127 3.01 63026 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 102026 846522 10.76 948548 2 108020 824627 11.58 932647 3 97199 822376 10.57 919575 4 91152 809980 10.12 901132 5 92811 811861 10.26 904672 6 89750 811689 9.96 901439 7 84397 790914 9.64 875311 8 84474 792507 9.63 876981 9 83197 802098 9.40 885295 10 79939 807892 9.00 887831 11 84965 817561 9.41 902526 12 85772 827615 9.39 913387 13 80966 831415 8.87 912381 14 83515 840905 9.03 924420 15 82828 847298 8.91 930126 16 80986 845417 8.74 926403 17 84760 847073 9.10 931833 18 83949 845280 9.03 929229 19 81341 850017 8.73 931358 20 83487 847393 8.97 930880 21 80001 850736 8.60 930737 22 76709 845983 8.31 922692 23 74278 842635 8.10 916913 24 72903 843323 7.96 916226 25 70505 840518 7.74 911023 26 70633 838192 7.77 908825 27 68547 861556 7.37 930103 28 64271 845575 7.06 909846 29 66312 839194 7.32 905506 30 66899 845499 7.33 912398 31 61940 846226 6.82 908166 32 61985 844284 6.84 906269 33 60959 842670 6.75 903629 34 56931 836856 6.37 893787 35 55674 839373 6.22 895047 36 55251 841179 6.16 896430 37 53279 838277 5.98 891556 38 52536 831547 5.94 884083 39 52192 831094 5.91 883286 40 49436 820106 5.69 869542 41 49430 817941 5.70 867371 42 48863 820535 5.62 869398 43 46849 813658 5.44 860507 44 45281 816194 5.26 861475 45 44320 812211 5.17 856531 46 41003 792842 4.92 833845 47 41196 783047 5.00 824243 48 39908 790141 4.81 830049 49 37763 768623 4.68 806386 50 37273 761493 4.67 798766 51 37043 756516 4.67 793559 52 34477 749844 4.40 784321 53 33162 750775 4.23 783937 54 32193 738043 4.18 770236 55 32678 735582 4.25 768260 56 30261 725221 4.01 755482 57 30229 714636 4.06 744865 58 29176 707302 3.96 736478 59 27973 703080 3.83 731053 60 27642 703543 3.78 731185 61 27193 686798 3.81 713991 62 26831 675513 3.82 702344 63 26683 673215 3.81 699898 64 25741 672213 3.69 697954 65 24671 663991 3.58 688662 66 24677 651306 3.65 675983 67 24635 641227 3.70 665862 68 23301 637731 3.52 661032 69 23176 622079 3.59 645255 70 22196 612746 3.50 634942 71 22587 602868 3.61 625455 72 22127 598054 3.57 620181 73 21127 589206 3.46 610333 74 21490 586011 3.54 607501 75 21388 576655 3.58 598043 76 21135 561129 3.63 582264 77 20786 554071 3.62 574857 78 20545 547143 3.62 567688 79 20598 538261 3.69 558859 80 20688 532190 3.74 552878 81 21206 528312 3.86 549518 82 20718 523607 3.81 544325 83 20708 512259 3.89 532967 84 19608 489736 3.85 509344 85 15391 439680 3.38 455071 86 6314 190191 3.21 196505 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 46798 34098 57.85 80896 2 48685 30724 61.31 79409 3 50098 33439 59.97 83537 4 47892 27908 63.18 75800 5 46705 25861 64.36 72566 6 46483 24975 65.05 71458 7 46603 24961 65.12 71564 8 44882 23667 65.47 68549 9 43985 22672 65.99 66657 10 43537 22654 65.77 66191 11 43514 21687 66.74 65201 12 42572 21211 66.75 63783 13 41699 21244 66.25 62943 14 40947 20178 66.99 61125 15 40591 19861 67.15 60452 16 40195 19772 67.03 59967 17 39467 19235 67.23 58702 18 38417 18778 67.17 57195 19 37592 18682 66.80 56274 20 37670 18015 67.65 55685 21 37411 18180 67.30 55591 22 36506 17831 67.18 54337 23 35317 16641 67.97 51958 24 35410 16603 68.08 52013 25 34778 16405 67.95 51183 26 33833 15781 68.19 49614 27 34058 15387 68.88 49445 28 33330 15311 68.52 48641 29 32741 14948 68.66 47689 30 32539 14522 69.14 47061 31 31535 14195 68.96 45730 32 31126 14026 68.94 45152 33 30960 13355 69.86 44315 34 30504 13254 69.71 43758 35 29994 13146 69.53 43140 36 29437 12749 69.78 42186 37 28618 12181 70.14 40799 38 27882 12045 69.83 39927 39 27158 11719 69.86 38877 40 27051 11450 70.26 38501 41 26636 11109 70.57 37745 42 25870 11053 70.06 36923 43 26034 10865 70.55 36899 44 25019 10313 70.81 35332 45 24569 10329 70.40 34898 46 24278 10141 70.54 34419 47 23258 9630 70.72 32888 48 23175 9749 70.39 32924 49 22414 9232 70.83 31646 50 22137 9278 70.47 31415 51 21730 9040 70.62 30770 52 21546 8851 70.88 30397 53 21075 8861 70.40 29936 54 20138 8486 70.35 28624 55 19903 8217 70.78 28120 56 19378 8081 70.57 27459 57 18971 7957 70.45 26928 58 18604 7830 70.38 26434 59 18196 7671 70.34 25867 60 17672 7377 70.55 25049 61 17060 7205 70.31 24265 62 16690 6985 70.50 23675 63 16373 6938 70.24 23311 64 16081 6809 70.25 22890 65 15641 6574 70.41 22215 66 15389 6495 70.32 21884 67 14925 6261 70.45 21186 68 14431 6299 69.61 20730 69 14194 5972 70.39 20166 70 13785 5901 70.02 19686 71 13120 5701 69.71 18821 72 12961 5511 70.17 18472 73 12770 5562 69.66 18332 74 12458 5532 69.25 17990 75 11898 5207 69.56 17105 76 11733 5242 69.12 16975 77 11465 4932 69.92 16397 78 10846 4873 69.00 15719 79 10909 4924 68.90 15833 80 10220 4671 68.63 14891 81 9944 4620 68.28 14564 82 9610 4439 68.40 14049 83 8664 4162 67.55 12826 84 6944 3773 64.79 10717 85 3946 3403 53.69 7349 86 31 1951 1.56 1982 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9934 127467 7.23 137401 2 13664 127411 9.69 141075 3 6026 128336 4.48 134362 4 6534 133785 4.66 140319 5 5284 114350 4.42 119634 6 4760 110192 4.14 114952 7 4319 108723 3.82 113042 8 3803 108458 3.39 112261 9 3730 105277 3.42 109007 10 3535 102379 3.34 105914 11 3503 103205 3.28 106708 12 3249 100570 3.13 103819 13 3332 97789 3.30 101121 14 3533 98572 3.46 102105 15 3041 95944 3.07 98985 16 2922 94470 3.00 97392 17 2838 93561 2.94 96399 18 2721 90583 2.92 93304 19 2638 90983 2.82 93621 20 2515 89512 2.73 92027 21 2536 87079 2.83 89615 22 2399 85261 2.74 87660 23 2294 85222 2.62 87516 24 2261 82707 2.66 84968 25 2184 83302 2.55 85486 26 2074 80456 2.51 82530 27 2001 79759 2.45 81760 28 1882 78412 2.34 80294 29 1912 77873 2.40 79785 30 1694 74396 2.23 76090 31 1735 73741 2.30 75476 32 1679 72809 2.25 74488 33 1671 70051 2.33 71722 34 1512 69793 2.12 71305 35 1430 69750 2.01 71180 36 1376 67771 1.99 69147 37 1431 66815 2.10 68246 38 1303 65597 1.95 66900 39 1280 64514 1.95 65794 40 1226 62832 1.91 64058 41 1157 62020 1.83 63177 42 1160 60885 1.87 62045 43 1103 59603 1.82 60706 44 1064 58321 1.79 59385 45 1041 56941 1.80 57982 46 993 55553 1.76 56546 47 984 55258 1.75 56242 48 960 53328 1.77 54288 49 951 52228 1.79 53179 50 899 51449 1.72 52348 51 953 50359 1.86 51312 52 906 48712 1.83 49618 53 946 48692 1.91 49638 54 957 46930 2.00 47887 55 847 46200 1.80 47047 56 780 45606 1.68 46386 57 837 42843 1.92 43680 58 748 43248 1.70 43996 59 793 42200 1.84 42993 60 780 40745 1.88 41525 61 737 39786 1.82 40523 62 709 39359 1.77 40068 63 654 37921 1.70 38575 64 686 37092 1.82 37778 65 671 36512 1.80 37183 66 644 35299 1.79 35943 67 693 34202 1.99 34895 68 618 33748 1.80 34366 69 582 33313 1.72 33895 70 611 32145 1.87 32756 71 567 31529 1.77 32096 72 549 30361 1.78 30910 73 545 30028 1.78 30573 74 501 29350 1.68 29851 75 516 28266 1.79 28782 76 516 27842 1.82 28358 77 510 27391 1.83 27901 78 533 26517 1.97 27050 79 457 26085 1.72 26542 80 457 26583 1.69 27040 81 424 24326 1.71 24750 82 459 23120 1.95 23579 83 396 22549 1.73 22945 84 362 21186 1.68 21548 85 282 19522 1.42 19804 86 70 14361 0.49 14431 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39792 422143 8.61 461935 2 49377 389996 11.24 439373 3 28968 387809 6.95 416777 4 27511 367893 6.96 395404 5 26770 361850 6.89 388620 6 24213 352463 6.43 376676 7 21353 334980 5.99 356333 8 20714 328837 5.93 349551 9 19356 328747 5.56 348103 10 17632 324506 5.15 342138 11 18564 322778 5.44 341342 12 17319 320636 5.12 337955 13 15890 315513 4.79 331403 14 16378 314034 4.96 330412 15 15427 309928 4.74 325355 16 15038 304518 4.71 319556 17 15439 300398 4.89 315837 18 14523 293040 4.72 307563 19 13942 289620 4.59 303562 20 13687 284422 4.59 298109 21 12931 279202 4.43 292133 22 12221 275724 4.24 287945 23 12006 270424 4.25 282430 24 11398 266726 4.10 278124 25 10365 261859 3.81 272224 26 10296 257100 3.85 267396 27 10011 259663 3.71 269674 28 8952 250513 3.45 259465 29 9192 246351 3.60 255543 30 8719 244032 3.45 252751 31 7961 240754 3.20 248715 32 7937 236555 3.25 244492 33 7821 232677 3.25 240498 34 7219 227271 3.08 234490 35 7102 225274 3.06 232376 36 6784 222558 2.96 229342 37 6625 218483 2.94 225108 38 6299 212866 2.87 219165 39 6223 210864 2.87 217087 40 5658 205054 2.69 210712 41 5718 200945 2.77 206663 42 5574 199368 2.72 204942 43 5574 195056 2.78 200630 44 5443 193481 2.74 198924 45 5177 191331 2.63 196508 46 4835 183244 2.57 188079 47 4628 178222 2.53 182850 48 4613 177384 2.53 181997 49 4324 169889 2.48 174213 50 4232 165345 2.50 169577 51 4445 162486 2.66 166931 52 3952 159246 2.42 163198 53 4250 156904 2.64 161154 54 3992 151895 2.56 155887 55 3939 150763 2.55 154702 56 3687 145947 2.46 149634 57 3865 140878 2.67 144743 58 3464 139248 2.43 142712 59 3507 136628 2.50 140135 60 3341 134735 2.42 138076 61 3392 130177 2.54 133569 62 3361 126490 2.59 129851 63 3267 124890 2.55 128157 64 3175 123892 2.50 127067 65 3003 120380 2.43 123383 66 2965 117581 2.46 120546 67 2993 114498 2.55 117491 68 2859 113380 2.46 116239 69 2799 108336 2.52 111135 70 2634 105072 2.45 107706 71 2549 102858 2.42 105407 72 2473 101073 2.39 103546 73 2407 98870 2.38 101277 74 2360 97117 2.37 99477 75 2381 95698 2.43 98079 76 2312 92189 2.45 94501 77 2258 89637 2.46 91895 78 2160 87081 2.42 89241 79 1981 85316 2.27 87297 80 2032 83503 2.38 85535 81 2033 82545 2.40 84578 82 1881 81103 2.27 82984 83 1808 79310 2.23 81118 84 1418 75057 1.85 76475 85 988 71971 1.35 72959 86 323 53989 0.59 54312