zr2096_1_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7338417 lines in total Total number of methylation call strings processed: 14676834 Final Cytosine Methylation Report ================================= Total number of C's analysed: 128523903 Total methylated C's in CpG context: 11164357 Total methylated C's in CHG context: 770640 Total methylated C's in CHH context: 5087000 Total C to T conversions in CpG context: 4939282 Total C to T conversions in CHG context: 25656873 Total C to T conversions in CHH context: 80905751 C methylated in CpG context: 69.3% C methylated in CHG context: 2.9% C methylated in CHH context: 5.9%