File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated CpHs	Unmethylated CpHs	Methylated CHHs	Unmethylated CHHs
zr2096_10_s1_R1_val_1_bismark_bt2_pe.bam	1000000	532162	258809	209029	0	1367	530795	9656656	932764	407354	57156	2067121	243231	5949030
zr2096_1_s1_R1_val_1_bismark_bt2_pe.bam	1000000	288473	607225	104301	1	9143	279330	4534552	385582	164917	32257	864563	275567	2811666
zr2096_2_s1_R1_val_1_bismark_bt2_pe.bam	1000000	503476	285525	210998	1	5358	498118	7583893	710832	287332	45981	1613757	303174	4622817
zr2096_3_s1_R1_val_1_bismark_bt2_pe.bam	1000000	526409	249675	223915	1	1361	525048	9507192	1049593	312579	52867	2054583	226946	5810624
zr2096_4_s1_R1_val_1_bismark_bt2_pe.bam	1000000	541137	234921	223942	0	783	540354	8656657	729965	371588	45672	1834338	245765	5429329
zr2096_5_s1_R1_val_1_bismark_bt2_pe.bam	1000000	520106	278464	201430	0	1247	518859	8805499	743249	355669	49454	1807852	250635	5598640
zr2096_6_s1_R1_val_1_bismark_bt2_pe.bam	1000000	545007	227088	227905	0	820	544187	8865699	848156	307232	47159	1874872	244710	5543570
zr2096_7_s1_R1_val_1_bismark_bt2_pe.bam	1000000	518103	286502	195395	0	769	517334	9248047	833778	327574	54322	1940270	246563	5845540
zr2096_8_s1_R1_val_1_bismark_bt2_pe.bam	1000000	481891	337604	180505	0	2585	479306	8111311	644017	323510	48503	1689076	271288	5134917
zr2096_9_s1_R1_val_1_bismark_bt2_pe.bam	1000000	506536	287217	206247	0	2728	503808	9143050	965361	299089	58589	1948911	244429	5626671