Bismark Processing Report

zr2096_10_s1_R1_val_1.fq.gz and zr2096_10_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 532162
Pairs without alignments under any condition 258809
Pairs that did not map uniquely 209029
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 14507114
Methylated C's in CpG context 1421648
Methylated C's in CHG context 83788
Methylated C's in CHH context 382029
Methylated C's in Unknown context 37110
Unmethylated C's in CpG context 604367
Unmethylated C's in CHG context 3125846
Unmethylated C's in CHH context 8889436
Unmethylated C's in Unknown context 164807
Percentage methylation (CpG context) 70.2%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 4.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 133939 original top strand
CTOT 131970 complementary to original top strand
CTOB 132144 complementary to original bottom strand
OB 134109 original bottom strand