zr2096_10_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 530795 lines in total Total number of methylation call strings processed: 1061590 Final Cytosine Methylation Report ================================= Total number of C's analysed: 9656656 Total methylated C's in CpG context: 932764 Total methylated C's in CHG context: 57156 Total methylated C's in CHH context: 243231 Total C to T conversions in CpG context: 407354 Total C to T conversions in CHG context: 2067121 Total C to T conversions in CHH context: 5949030 C methylated in CpG context: 69.6% C methylated in CHG context: 2.7% C methylated in CHH context: 3.9%