Bismark Processing Report

zr2096_1_s1_R1_val_1.fq.gz and zr2096_1_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 288474
Pairs without alignments under any condition 607225
Pairs that did not map uniquely 104301
Genomic sequence context not extractable (edges of chromosomes) 1

Cytosine Methylation

Total C's analysed 7000478
Methylated C's in CpG context 585279
Methylated C's in CHG context 53657
Methylated C's in CHH context 541383
Methylated C's in Unknown context 54451
Unmethylated C's in CpG context 246829
Unmethylated C's in CHG context 1295385
Unmethylated C's in CHH context 4277945
Unmethylated C's in Unknown context 118630
Percentage methylation (CpG context) 70.3%
Percentage methylation (CHG context) 4.0%
Percentage methylation (CHH context) 11.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 72189 original top strand
CTOT 73122 complementary to original top strand
CTOB 72138 complementary to original bottom strand
OB 71024 original bottom strand