CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3863 2174 63.99 6037 2 4229 2020 67.67 6249 3 4067 1983 67.22 6050 4 3665 1795 67.12 5460 5 3545 1863 65.55 5408 6 3671 1804 67.05 5475 7 3969 1839 68.34 5808 8 3764 1791 67.76 5555 9 3863 1698 69.47 5561 10 3846 1786 68.29 5632 11 4046 1796 69.26 5842 12 3943 1754 69.21 5697 13 3995 1705 70.09 5700 14 3895 1740 69.12 5635 15 4127 1745 70.28 5872 16 4222 1740 70.82 5962 17 4008 1692 70.32 5700 18 3915 1639 70.49 5554 19 4150 1646 71.60 5796 20 4045 1663 70.87 5708 21 4139 1743 70.37 5882 22 4241 1719 71.16 5960 23 4064 1620 71.50 5684 24 4112 1659 71.25 5771 25 4210 1813 69.90 6023 26 4048 1702 70.40 5750 27 4114 1713 70.60 5827 28 4269 1669 71.89 5938 29 4105 1741 70.22 5846 30 4092 1649 71.28 5741 31 4156 1669 71.35 5825 32 4238 1639 72.11 5877 33 4182 1694 71.17 5876 34 4270 1636 72.30 5906 35 4126 1663 71.27 5789 36 4153 1733 70.56 5886 37 4301 1622 72.62 5923 38 4027 1638 71.09 5665 39 4196 1607 72.31 5803 40 4206 1658 71.73 5864 41 4159 1603 72.18 5762 42 3938 1619 70.87 5557 43 3954 1516 72.29 5470 44 3935 1479 72.68 5414 45 3848 1530 71.55 5378 46 3974 1545 72.01 5519 47 3860 1596 70.75 5456 48 3874 1581 71.02 5455 49 3823 1490 71.96 5313 50 3727 1523 70.99 5250 51 3617 1457 71.28 5074 52 3602 1411 71.85 5013 53 3642 1389 72.39 5031 54 3538 1435 71.14 4973 55 3516 1402 71.49 4918 56 3484 1432 70.87 4916 57 3456 1408 71.05 4864 58 3415 1408 70.81 4823 59 3249 1334 70.89 4583 60 3299 1345 71.04 4644 61 3336 1263 72.54 4599 62 3133 1335 70.12 4468 63 3068 1310 70.08 4378 64 3075 1263 70.89 4338 65 3041 1327 69.62 4368 66 2996 1179 71.76 4175 67 2971 1254 70.32 4225 68 2919 1215 70.61 4134 69 2911 1138 71.89 4049 70 2834 1200 70.25 4034 71 2899 1248 69.91 4147 72 2660 1251 68.01 3911 73 2809 1169 70.61 3978 74 2589 1193 68.46 3782 75 2502 1159 68.34 3661 76 2542 1103 69.74 3645 77 2321 1078 68.28 3399 78 2202 1059 67.53 3261 79 1838 850 68.38 2688 80 913 390 70.07 1303 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1338 8641 13.41 9979 2 883 9152 8.80 10035 3 667 8867 7.00 9534 4 522 8595 5.73 9117 5 499 8398 5.61 8897 6 582 8289 6.56 8871 7 474 8327 5.39 8801 8 466 8752 5.06 9218 9 434 8590 4.81 9024 10 406 8528 4.54 8934 11 444 8795 4.81 9239 12 446 8755 4.85 9201 13 357 8638 3.97 8995 14 397 8937 4.25 9334 15 393 8857 4.25 9250 16 357 8615 3.98 8972 17 395 8847 4.27 9242 18 407 8933 4.36 9340 19 370 8824 4.02 9194 20 371 9014 3.95 9385 21 334 9013 3.57 9347 22 390 8899 4.20 9289 23 363 9137 3.82 9500 24 347 9182 3.64 9529 25 354 8810 3.86 9164 26 375 8888 4.05 9263 27 345 9305 3.58 9650 28 396 9103 4.17 9499 29 348 9355 3.59 9703 30 365 8909 3.94 9274 31 330 9155 3.48 9485 32 359 9301 3.72 9660 33 410 9286 4.23 9696 34 337 8897 3.65 9234 35 325 9005 3.48 9330 36 316 8956 3.41 9272 37 334 8937 3.60 9271 38 305 9060 3.26 9365 39 329 9068 3.50 9397 40 335 9033 3.58 9368 41 309 8933 3.34 9242 42 317 8800 3.48 9117 43 278 8741 3.08 9019 44 274 8671 3.06 8945 45 283 8765 3.13 9048 46 297 8525 3.37 8822 47 260 8504 2.97 8764 48 233 8408 2.70 8641 49 234 8359 2.72 8593 50 263 8130 3.13 8393 51 228 8248 2.69 8476 52 248 8039 2.99 8287 53 221 7934 2.71 8155 54 216 7906 2.66 8122 55 223 7725 2.81 7948 56 191 7721 2.41 7912 57 209 7835 2.60 8044 58 198 7458 2.59 7656 59 190 7765 2.39 7955 60 173 7517 2.25 7690 61 157 7339 2.09 7496 62 190 7171 2.58 7361 63 156 7033 2.17 7189 64 163 7111 2.24 7274 65 162 6851 2.31 7013 66 169 7006 2.36 7175 67 150 6716 2.18 6866 68 118 6502 1.78 6620 69 124 6443 1.89 6567 70 139 6367 2.14 6506 71 159 6263 2.48 6422 72 124 6345 1.92 6469 73 126 6156 2.01 6282 74 131 6075 2.11 6206 75 128 6048 2.07 6176 76 121 5682 2.09 5803 77 127 5617 2.21 5744 78 121 5334 2.22 5455 79 119 4290 2.70 4409 80 39 2126 1.80 2165 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5891 29537 16.63 35428 2 5268 30348 14.79 35616 3 5699 30650 15.68 36349 4 5058 30071 14.40 35129 5 4827 29779 13.95 34606 6 4872 28623 14.55 33495 7 4764 28276 14.42 33040 8 4589 28113 14.03 32702 9 4828 28719 14.39 33547 10 4953 28952 14.61 33905 11 4665 28378 14.12 33043 12 4817 28807 14.33 33624 13 4781 29338 14.01 34119 14 4625 30254 13.26 34879 15 4945 29994 14.15 34939 16 5054 30208 14.33 35262 17 4719 30213 13.51 34932 18 4788 30458 13.58 35246 19 4731 31055 13.22 35786 20 4655 30930 13.08 35585 21 4905 30718 13.77 35623 22 4986 30638 14.00 35624 23 4475 30645 12.74 35120 24 4628 30789 13.07 35417 25 4655 30719 13.16 35374 26 4426 30869 12.54 35295 27 4525 30725 12.84 35250 28 4675 30668 13.23 35343 29 4342 30715 12.39 35057 30 4419 30676 12.59 35095 31 4279 31209 12.06 35488 32 3973 30543 11.51 34516 33 4003 30391 11.64 34394 34 4079 30300 11.86 34379 35 3821 30217 11.23 34038 36 3884 30277 11.37 34161 37 3911 30012 11.53 33923 38 3521 29542 10.65 33063 39 3609 29689 10.84 33298 40 3459 30056 10.32 33515 41 3351 29751 10.12 33102 42 3307 29349 10.13 32656 43 3102 28711 9.75 31813 44 2993 28323 9.56 31316 45 2900 28029 9.38 30929 46 2794 27999 9.07 30793 47 2521 27539 8.39 30060 48 2606 27235 8.73 29841 49 2432 27363 8.16 29795 50 2213 26305 7.76 28518 51 2257 26156 7.94 28413 52 2182 26079 7.72 28261 53 1971 25437 7.19 27408 54 1965 25144 7.25 27109 55 1916 25064 7.10 26980 56 1690 24166 6.54 25856 57 1645 24382 6.32 26027 58 1567 23674 6.21 25241 59 1435 23582 5.74 25017 60 1365 22849 5.64 24214 61 1215 22450 5.13 23665 62 1111 22145 4.78 23256 63 1046 22033 4.53 23079 64 1047 21954 4.55 23001 65 1018 21072 4.61 22090 66 909 20729 4.20 21638 67 955 20664 4.42 21619 68 894 20420 4.19 21314 69 817 20304 3.87 21121 70 799 19738 3.89 20537 71 742 19572 3.65 20314 72 716 19221 3.59 19937 73 743 18719 3.82 19462 74 679 18314 3.58 18993 75 650 17679 3.55 18329 76 656 17766 3.56 18422 77 585 16985 3.33 17570 78 570 16077 3.42 16647 79 491 13126 3.61 13617 80 215 6045 3.43 6260 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2611 1558 62.63 4169 2 2686 1287 67.61 3973 3 2576 1212 68.00 3788 4 1894 1092 63.43 2986 5 1842 986 65.13 2828 6 1880 983 65.67 2863 7 1946 994 66.19 2940 8 1915 935 67.19 2850 9 1876 905 67.46 2781 10 1975 961 67.27 2936 11 1847 998 64.92 2845 12 1871 865 68.38 2736 13 1822 847 68.27 2669 14 1709 815 67.71 2524 15 1780 824 68.36 2604 16 1821 777 70.09 2598 17 1673 816 67.22 2489 18 1669 757 68.80 2426 19 1685 710 70.35 2395 20 1645 738 69.03 2383 21 1638 730 69.17 2368 22 1529 680 69.22 2209 23 1508 683 68.83 2191 24 1498 640 70.07 2138 25 1508 633 70.43 2141 26 1486 641 69.86 2127 27 1354 611 68.91 1965 28 1468 633 69.87 2101 29 1433 616 69.94 2049 30 1387 570 70.87 1957 31 1407 559 71.57 1966 32 1357 574 70.27 1931 33 1222 548 69.04 1770 34 1291 531 70.86 1822 35 1286 526 70.97 1812 36 1197 504 70.37 1701 37 1269 495 71.94 1764 38 1271 515 71.16 1786 39 1198 465 72.04 1663 40 1201 467 72.00 1668 41 1142 451 71.69 1593 42 1052 428 71.08 1480 43 1077 454 70.35 1531 44 992 457 68.46 1449 45 1055 396 72.71 1451 46 1032 422 70.98 1454 47 998 436 69.60 1434 48 965 437 68.83 1402 49 949 369 72.00 1318 50 949 386 71.09 1335 51 894 373 70.56 1267 52 892 359 71.30 1251 53 865 362 70.50 1227 54 875 335 72.31 1210 55 868 353 71.09 1221 56 820 342 70.57 1162 57 788 340 69.86 1128 58 764 289 72.55 1053 59 770 296 72.23 1066 60 720 291 71.22 1011 61 739 330 69.13 1069 62 717 265 73.01 982 63 656 314 67.63 970 64 685 288 70.40 973 65 646 279 69.84 925 66 637 236 72.97 873 67 620 225 73.37 845 68 660 241 73.25 901 69 595 242 71.09 837 70 584 241 70.79 825 71 564 224 71.57 788 72 563 229 71.09 792 73 560 242 69.83 802 74 545 202 72.96 747 75 506 229 68.84 735 76 471 224 67.77 695 77 516 218 70.30 734 78 435 192 69.38 627 79 387 173 69.11 560 80 252 119 67.92 371 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1058 6253 14.47 7311 2 432 5513 7.27 5945 3 420 5198 7.48 5618 4 235 5354 4.20 5589 5 273 4722 5.47 4995 6 364 4603 7.33 4967 7 186 4630 3.86 4816 8 212 4812 4.22 5024 9 183 4472 3.93 4655 10 177 4388 3.88 4565 11 179 4443 3.87 4622 12 165 4439 3.58 4604 13 138 4278 3.12 4416 14 139 4135 3.25 4274 15 133 4179 3.08 4312 16 115 4148 2.70 4263 17 116 3995 2.82 4111 18 100 3911 2.49 4011 19 108 3671 2.86 3779 20 101 3698 2.66 3799 21 100 3746 2.60 3846 22 95 3590 2.58 3685 23 82 3605 2.22 3687 24 78 3489 2.19 3567 25 78 3549 2.15 3627 26 79 3334 2.31 3413 27 74 3340 2.17 3414 28 73 3219 2.22 3292 29 59 3209 1.81 3268 30 70 3180 2.15 3250 31 85 3138 2.64 3223 32 64 3081 2.03 3145 33 84 3093 2.64 3177 34 69 2872 2.35 2941 35 70 2901 2.36 2971 36 56 2840 1.93 2896 37 67 2729 2.40 2796 38 51 2733 1.83 2784 39 46 2799 1.62 2845 40 51 2704 1.85 2755 41 34 2606 1.29 2640 42 47 2660 1.74 2707 43 47 2459 1.88 2506 44 48 2432 1.94 2480 45 43 2291 1.84 2334 46 43 2421 1.75 2464 47 40 2257 1.74 2297 48 36 2168 1.63 2204 49 40 2166 1.81 2206 50 32 2133 1.48 2165 51 31 2098 1.46 2129 52 23 2023 1.12 2046 53 27 1943 1.37 1970 54 37 1949 1.86 1986 55 29 1914 1.49 1943 56 28 1864 1.48 1892 57 47 1759 2.60 1806 58 47 1794 2.55 1841 59 26 1766 1.45 1792 60 32 1746 1.80 1778 61 39 1568 2.43 1607 62 26 1646 1.56 1672 63 31 1553 1.96 1584 64 22 1559 1.39 1581 65 30 1504 1.96 1534 66 18 1512 1.18 1530 67 32 1482 2.11 1514 68 29 1400 2.03 1429 69 33 1403 2.30 1436 70 16 1333 1.19 1349 71 20 1339 1.47 1359 72 27 1214 2.18 1241 73 20 1281 1.54 1301 74 26 1289 1.98 1315 75 22 1186 1.82 1208 76 26 1120 2.27 1146 77 18 1085 1.63 1103 78 13 1012 1.27 1025 79 18 868 2.03 886 80 16 655 2.38 671 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3018 20890 12.62 23908 2 1990 17630 10.14 19620 3 1376 16739 7.60 18115 4 991 15885 5.87 16876 5 1025 15498 6.20 16523 6 1363 14078 8.83 15441 7 810 14264 5.37 15074 8 828 13745 5.68 14573 9 913 13598 6.29 14511 10 835 13642 5.77 14477 11 772 13199 5.53 13971 12 723 13172 5.20 13895 13 664 13371 4.73 14035 14 633 13158 4.59 13791 15 640 13062 4.67 13702 16 629 13028 4.61 13657 17 515 12673 3.91 13188 18 556 12498 4.26 13054 19 495 12093 3.93 12588 20 452 11677 3.73 12129 21 487 11699 4.00 12186 22 386 11309 3.30 11695 23 417 11358 3.54 11775 24 368 11187 3.18 11555 25 369 10973 3.25 11342 26 367 10745 3.30 11112 27 342 10547 3.14 10889 28 334 10386 3.12 10720 29 330 10279 3.11 10609 30 301 10098 2.89 10399 31 298 10037 2.88 10335 32 293 9776 2.91 10069 33 273 9498 2.79 9771 34 244 9225 2.58 9469 35 246 9193 2.61 9439 36 221 9060 2.38 9281 37 255 8970 2.76 9225 38 229 8695 2.57 8924 39 224 8676 2.52 8900 40 228 8481 2.62 8709 41 209 8472 2.41 8681 42 212 8043 2.57 8255 43 169 7924 2.09 8093 44 172 7817 2.15 7989 45 169 7483 2.21 7652 46 167 7426 2.20 7593 47 157 7365 2.09 7522 48 180 7214 2.43 7394 49 163 7293 2.19 7456 50 148 6932 2.09 7080 51 140 6720 2.04 6860 52 141 6700 2.06 6841 53 130 6406 1.99 6536 54 133 6295 2.07 6428 55 144 6101 2.31 6245 56 130 5949 2.14 6079 57 123 5941 2.03 6064 58 121 5717 2.07 5838 59 122 5745 2.08 5867 60 132 5545 2.33 5677 61 117 5362 2.14 5479 62 114 5287 2.11 5401 63 112 5187 2.11 5299 64 123 5191 2.31 5314 65 111 4877 2.23 4988 66 124 4787 2.52 4911 67 101 4743 2.09 4844 68 97 4770 1.99 4867 69 103 4697 2.15 4800 70 108 4535 2.33 4643 71 85 4262 1.96 4347 72 84 4478 1.84 4562 73 97 4055 2.34 4152 74 84 3934 2.09 4018 75 88 3896 2.21 3984 76 78 3805 2.01 3883 77 80 3655 2.14 3735 78 66 3438 1.88 3504 79 75 3105 2.36 3180 80 44 2171 1.99 2215