zr2096_1_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 279330 lines in total Total number of methylation call strings processed: 558660 Final Cytosine Methylation Report ================================= Total number of C's analysed: 4534552 Total methylated C's in CpG context: 385582 Total methylated C's in CHG context: 32257 Total methylated C's in CHH context: 275567 Total C to T conversions in CpG context: 164917 Total C to T conversions in CHG context: 864563 Total C to T conversions in CHH context: 2811666 C methylated in CpG context: 70.0% C methylated in CHG context: 3.6% C methylated in CHH context: 8.9%