Bismark Processing Report

zr2096_2_s1_R1_val_1.fq.gz and zr2096_2_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 503477
Pairs without alignments under any condition 285525
Pairs that did not map uniquely 210998
Genomic sequence context not extractable (edges of chromosomes) 1

Cytosine Methylation

Total C's analysed 12425132
Methylated C's in CpG context 1171780
Methylated C's in CHG context 75002
Methylated C's in CHH context 557179
Methylated C's in Unknown context 51768
Unmethylated C's in CpG context 462498
Unmethylated C's in CHG context 2635229
Unmethylated C's in CHH context 7523444
Unmethylated C's in Unknown context 169378
Percentage methylation (CpG context) 71.7%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 6.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 126715 original top strand
CTOT 124810 complementary to original top strand
CTOB 125599 complementary to original bottom strand
OB 126352 original bottom strand