CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7991 4123 65.96 12114 2 8885 3796 70.07 12681 3 8109 3733 68.48 11842 4 7811 3565 68.66 11376 5 7940 3447 69.73 11387 6 7912 3429 69.76 11341 7 8116 3628 69.11 11744 8 8070 3410 70.30 11480 9 8195 3321 71.16 11516 10 8377 3347 71.45 11724 11 8506 3386 71.53 11892 12 8636 3421 71.63 12057 13 8535 3321 71.99 11856 14 8567 3494 71.03 12061 15 8588 3305 72.21 11893 16 8759 3305 72.60 12064 17 8670 3320 72.31 11990 18 8742 3259 72.84 12001 19 8703 3304 72.48 12007 20 8593 3338 72.02 11931 21 8721 3271 72.72 11992 22 8870 3366 72.49 12236 23 8941 3397 72.47 12338 24 8754 3361 72.26 12115 25 8899 3358 72.60 12257 26 8785 3420 71.98 12205 27 8784 3315 72.60 12099 28 8877 3317 72.80 12194 29 8818 3321 72.64 12139 30 8812 3167 73.56 11979 31 8890 3188 73.60 12078 32 8600 3345 72.00 11945 33 8765 3122 73.74 11887 34 8864 3351 72.57 12215 35 8620 3217 72.82 11837 36 8614 3148 73.24 11762 37 8582 3201 72.83 11783 38 8628 3099 73.57 11727 39 8306 3184 72.29 11490 40 8443 3149 72.83 11592 41 8361 3161 72.57 11522 42 7924 2964 72.78 10888 43 8094 2946 73.32 11040 44 8074 2915 73.47 10989 45 7861 2922 72.90 10783 46 7773 2980 72.29 10753 47 7590 3028 71.48 10618 48 7580 2953 71.96 10533 49 7551 2896 72.28 10447 50 7297 2886 71.66 10183 51 7207 2730 72.53 9937 52 7204 2722 72.58 9926 53 7078 2767 71.89 9845 54 6973 2642 72.52 9615 55 6885 2692 71.89 9577 56 6688 2627 71.80 9315 57 6714 2623 71.91 9337 58 6511 2630 71.23 9141 59 6219 2475 71.53 8694 60 6263 2520 71.31 8783 61 6227 2394 72.23 8621 62 5893 2432 70.79 8325 63 5837 2286 71.86 8123 64 5721 2229 71.96 7950 65 5583 2281 70.99 7864 66 5505 2194 71.50 7699 67 5201 2130 70.95 7331 68 5184 2061 71.55 7245 69 5103 2125 70.60 7228 70 4995 2082 70.58 7077 71 4818 2053 70.12 6871 72 4682 1976 70.32 6658 73 4652 2008 69.85 6660 74 4473 1956 69.58 6429 75 4283 1810 70.29 6093 76 4376 1852 70.26 6228 77 4067 1762 69.77 5829 78 3640 1720 67.91 5360 79 2977 1362 68.61 4339 80 1364 608 69.17 1972 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1914 18394 9.42 20308 2 1186 18783 5.94 19969 3 955 19148 4.75 20103 4 718 18770 3.68 19488 5 755 18348 3.95 19103 6 846 18487 4.38 19333 7 655 18814 3.36 19469 8 657 19128 3.32 19785 9 606 18153 3.23 18759 10 570 18540 2.98 19110 11 614 18525 3.21 19139 12 552 18996 2.82 19548 13 593 18410 3.12 19003 14 564 19075 2.87 19639 15 553 19281 2.79 19834 16 592 19276 2.98 19868 17 543 19250 2.74 19793 18 551 19601 2.73 20152 19 480 19459 2.41 19939 20 508 19273 2.57 19781 21 504 19634 2.50 20138 22 511 19199 2.59 19710 23 537 19841 2.64 20378 24 493 20074 2.40 20567 25 500 19796 2.46 20296 26 521 19436 2.61 19957 27 488 19874 2.40 20362 28 476 19834 2.34 20310 29 470 19720 2.33 20190 30 454 19453 2.28 19907 31 473 19578 2.36 20051 32 485 19518 2.42 20003 33 483 19832 2.38 20315 34 458 19268 2.32 19726 35 496 19230 2.51 19726 36 491 18996 2.52 19487 37 442 18855 2.29 19297 38 481 18910 2.48 19391 39 446 19084 2.28 19530 40 432 18585 2.27 19017 41 466 18363 2.47 18829 42 405 18491 2.14 18896 43 432 18176 2.32 18608 44 402 17764 2.21 18166 45 407 17668 2.25 18075 46 421 17482 2.35 17903 47 379 17226 2.15 17605 48 403 16983 2.32 17386 49 389 16904 2.25 17293 50 415 16315 2.48 16730 51 401 16652 2.35 17053 52 384 15906 2.36 16290 53 346 15758 2.15 16104 54 353 15657 2.20 16010 55 319 15126 2.07 15445 56 330 14969 2.16 15299 57 292 14883 1.92 15175 58 310 14783 2.05 15093 59 311 14464 2.10 14775 60 311 14309 2.13 14620 61 283 13667 2.03 13950 62 292 13302 2.15 13594 63 277 13197 2.06 13474 64 241 12888 1.84 13129 65 291 12690 2.24 12981 66 264 12376 2.09 12640 67 271 12166 2.18 12437 68 249 11992 2.03 12241 69 245 11505 2.09 11750 70 233 11286 2.02 11519 71 259 11172 2.27 11431 72 231 11005 2.06 11236 73 227 10466 2.12 10693 74 239 10430 2.24 10669 75 210 10238 2.01 10448 76 198 9716 2.00 9914 77 215 9295 2.26 9510 78 215 8725 2.40 8940 79 162 7010 2.26 7172 80 90 3341 2.62 3431 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6677 56074 10.64 62751 2 6268 55962 10.07 62230 3 6054 56666 9.65 62720 4 5750 55724 9.35 61474 5 5596 54986 9.24 60582 6 5637 52729 9.66 58366 7 5219 53259 8.92 58478 8 4971 52582 8.64 57553 9 5446 53382 9.26 58828 10 5203 54004 8.79 59207 11 4985 53219 8.56 58204 12 5214 53334 8.91 58548 13 5357 53946 9.03 59303 14 5097 54170 8.60 59267 15 5280 55086 8.75 60366 16 5188 55825 8.50 61013 17 5140 55710 8.45 60850 18 5277 56196 8.58 61473 19 5148 56464 8.36 61612 20 4980 56519 8.10 61499 21 5264 56515 8.52 61779 22 5113 56415 8.31 61528 23 4709 56258 7.72 60967 24 4886 56296 7.99 61182 25 5039 56515 8.19 61554 26 4555 56854 7.42 61409 27 4845 56592 7.89 61437 28 4718 56867 7.66 61585 29 4546 55925 7.52 60471 30 4472 56078 7.39 60550 31 4573 57192 7.40 61765 32 4219 56255 6.98 60474 33 4268 55297 7.17 59565 34 4266 55381 7.15 59647 35 3884 54924 6.60 58808 36 3921 54499 6.71 58420 37 3912 54385 6.71 58297 38 3682 53826 6.40 57508 39 3748 53741 6.52 57489 40 3654 53279 6.42 56933 41 3472 52937 6.16 56409 42 3325 51603 6.05 54928 43 3285 51517 5.99 54802 44 3043 50205 5.71 53248 45 3099 49857 5.85 52956 46 2897 49570 5.52 52467 47 2800 48528 5.46 51328 48 2733 48571 5.33 51304 49 2620 47726 5.20 50346 50 2388 46432 4.89 48820 51 2504 45531 5.21 48035 52 2201 45137 4.65 47338 53 2142 44047 4.64 46189 54 1978 43545 4.35 45523 55 1884 42839 4.21 44723 56 1803 41984 4.12 43787 57 1699 41716 3.91 43415 58 1682 40434 3.99 42116 59 1636 39469 3.98 41105 60 1541 38999 3.80 40540 61 1471 38053 3.72 39524 62 1310 37534 3.37 38844 63 1330 37074 3.46 38404 64 1305 36782 3.43 38087 65 1193 35225 3.28 36418 66 1217 34668 3.39 35885 67 1127 34063 3.20 35190 68 1092 33562 3.15 34654 69 1063 32671 3.15 33734 70 1001 31625 3.07 32626 71 1009 31177 3.13 32186 72 944 30284 3.02 31228 73 885 29717 2.89 30602 74 921 28855 3.09 29776 75 910 28115 3.14 29025 76 856 27527 3.02 28383 77 855 26231 3.16 27086 78 794 23863 3.22 24657 79 644 19520 3.19 20164 80 276 9297 2.88 9573 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4742 2754 63.26 7496 2 4609 2107 68.63 6716 3 4049 1932 67.70 5981 4 3087 1680 64.76 4767 5 3052 1632 65.16 4684 6 3020 1526 66.43 4546 7 3055 1666 64.71 4721 8 2925 1480 66.40 4405 9 2873 1370 67.71 4243 10 2990 1375 68.50 4365 11 2996 1339 69.11 4335 12 2741 1393 66.30 4134 13 2811 1235 69.48 4046 14 2689 1327 66.96 4016 15 2707 1175 69.73 3882 16 2607 1188 68.70 3795 17 2563 1118 69.63 3681 18 2405 1036 69.89 3441 19 2470 1056 70.05 3526 20 2214 970 69.54 3184 21 2278 968 70.18 3246 22 2168 979 68.89 3147 23 2058 954 68.33 3012 24 2049 936 68.64 2985 25 2099 825 71.79 2924 26 1973 864 69.55 2837 27 1968 777 71.69 2745 28 2021 807 71.46 2828 29 1814 780 69.93 2594 30 1772 732 70.77 2504 31 1776 735 70.73 2511 32 1761 685 72.00 2446 33 1670 686 70.88 2356 34 1670 661 71.64 2331 35 1566 664 70.22 2230 36 1520 630 70.70 2150 37 1476 597 71.20 2073 38 1490 573 72.22 2063 39 1412 571 71.21 1983 40 1361 611 69.02 1972 41 1364 545 71.45 1909 42 1323 541 70.98 1864 43 1245 486 71.92 1731 44 1177 482 70.95 1659 45 1231 453 73.10 1684 46 1232 488 71.63 1720 47 1118 498 69.18 1616 48 1087 449 70.77 1536 49 1042 406 71.96 1448 50 1059 429 71.17 1488 51 979 395 71.25 1374 52 991 429 69.79 1420 53 903 398 69.41 1301 54 923 358 72.05 1281 55 936 352 72.67 1288 56 841 381 68.82 1222 57 900 347 72.17 1247 58 831 320 72.20 1151 59 807 317 71.80 1124 60 768 310 71.24 1078 61 779 316 71.14 1095 62 714 287 71.33 1001 63 696 296 70.16 992 64 649 281 69.78 930 65 679 272 71.40 951 66 611 275 68.96 886 67 647 245 72.53 892 68 615 247 71.35 862 69 592 220 72.91 812 70 536 208 72.04 744 71 549 246 69.06 795 72 532 230 69.82 762 73 496 203 70.96 699 74 499 246 66.98 745 75 480 191 71.54 671 76 429 186 69.76 615 77 412 180 69.59 592 78 396 178 68.99 574 79 308 155 66.52 463 80 243 143 62.95 386 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1460 11847 10.97 13307 2 582 9610 5.71 10192 3 657 8872 6.89 9529 4 312 8866 3.40 9178 5 392 7686 4.85 8078 6 503 7390 6.37 7893 7 255 7564 3.26 7819 8 307 7682 3.84 7989 9 236 6953 3.28 7189 10 250 6771 3.56 7021 11 220 6812 3.13 7032 12 182 6979 2.54 7161 13 166 6655 2.43 6821 14 191 6279 2.95 6470 15 164 6525 2.45 6689 16 189 6224 2.95 6413 17 160 5823 2.67 5983 18 152 5660 2.62 5812 19 127 5431 2.28 5558 20 152 5392 2.74 5544 21 133 5272 2.46 5405 22 121 5163 2.29 5284 23 141 4978 2.75 5119 24 115 4915 2.29 5030 25 110 4643 2.31 4753 26 99 4695 2.07 4794 27 103 4534 2.22 4637 28 86 4484 1.88 4570 29 90 4381 2.01 4471 30 68 4126 1.62 4194 31 82 4077 1.97 4159 32 93 4107 2.21 4200 33 77 4047 1.87 4124 34 62 3771 1.62 3833 35 74 3736 1.94 3810 36 72 3672 1.92 3744 37 68 3433 1.94 3501 38 66 3362 1.93 3428 39 51 3277 1.53 3328 40 65 3168 2.01 3233 41 49 3077 1.57 3126 42 56 3087 1.78 3143 43 39 2978 1.29 3017 44 41 2877 1.41 2918 45 36 2829 1.26 2865 46 56 2777 1.98 2833 47 48 2793 1.69 2841 48 47 2477 1.86 2524 49 54 2457 2.15 2511 50 60 2460 2.38 2520 51 37 2391 1.52 2428 52 49 2185 2.19 2234 53 36 2189 1.62 2225 54 33 2147 1.51 2180 55 30 2115 1.40 2145 56 45 2061 2.14 2106 57 38 1964 1.90 2002 58 36 1873 1.89 1909 59 41 1822 2.20 1863 60 20 1784 1.11 1804 61 35 1684 2.04 1719 62 31 1719 1.77 1750 63 45 1592 2.75 1637 64 25 1587 1.55 1612 65 22 1522 1.42 1544 66 24 1535 1.54 1559 67 28 1431 1.92 1459 68 22 1440 1.50 1462 69 31 1301 2.33 1332 70 15 1343 1.10 1358 71 24 1313 1.80 1337 72 18 1281 1.39 1299 73 26 1195 2.13 1221 74 23 1164 1.94 1187 75 20 1216 1.62 1236 76 17 1099 1.52 1116 77 15 1035 1.43 1050 78 20 963 2.03 983 79 22 822 2.61 844 80 13 536 2.37 549 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3932 37147 9.57 41079 2 2575 28062 8.40 30637 3 1731 26018 6.24 27749 4 1335 24250 5.22 25585 5 1357 23274 5.51 24631 6 1607 21093 7.08 22700 7 1015 20793 4.65 21808 8 1023 19920 4.88 20943 9 1081 20387 5.04 21468 10 1027 19803 4.93 20830 11 909 18926 4.58 19835 12 840 18704 4.30 19544 13 842 18718 4.30 19560 14 703 18249 3.71 18952 15 802 18218 4.22 19020 16 727 17976 3.89 18703 17 674 17372 3.73 18046 18 623 16839 3.57 17462 19 613 16132 3.66 16745 20 557 15622 3.44 16179 21 531 15462 3.32 15993 22 523 15015 3.37 15538 23 489 14763 3.21 15252 24 503 14299 3.40 14802 25 505 13977 3.49 14482 26 418 13667 2.97 14085 27 455 13221 3.33 13676 28 442 13090 3.27 13532 29 383 12539 2.96 12922 30 375 12352 2.95 12727 31 356 12189 2.84 12545 32 332 11614 2.78 11946 33 319 11328 2.74 11647 34 300 11227 2.60 11527 35 304 10982 2.69 11286 36 313 10699 2.84 11012 37 272 10431 2.54 10703 38 279 10187 2.67 10466 39 269 9865 2.65 10134 40 260 9860 2.57 10120 41 258 9455 2.66 9713 42 231 8965 2.51 9196 43 229 8807 2.53 9036 44 236 8462 2.71 8698 45 241 8416 2.78 8657 46 187 8215 2.23 8402 47 199 7924 2.45 8123 48 210 7835 2.61 8045 49 175 7727 2.21 7902 50 179 7152 2.44 7331 51 175 6914 2.47 7089 52 192 7032 2.66 7224 53 173 6545 2.58 6718 54 166 6229 2.60 6395 55 178 6207 2.79 6385 56 138 6182 2.18 6320 57 152 5886 2.52 6038 58 139 5587 2.43 5726 59 143 5569 2.50 5712 60 155 5438 2.77 5593 61 142 5250 2.63 5392 62 137 4916 2.71 5053 63 134 5018 2.60 5152 64 132 4821 2.67 4953 65 135 4688 2.80 4823 66 121 4377 2.69 4498 67 135 4446 2.95 4581 68 109 4430 2.40 4539 69 117 4227 2.69 4344 70 112 4018 2.71 4130 71 128 3881 3.19 4009 72 91 3786 2.35 3877 73 96 3742 2.50 3838 74 93 3650 2.48 3743 75 84 3477 2.36 3561 76 97 3339 2.82 3436 77 67 3116 2.10 3183 78 81 3059 2.58 3140 79 63 2532 2.43 2595 80 47 1806 2.54 1853