zr2096_2_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 498118 lines in total Total number of methylation call strings processed: 996236 Final Cytosine Methylation Report ================================= Total number of C's analysed: 7583893 Total methylated C's in CpG context: 710832 Total methylated C's in CHG context: 45981 Total methylated C's in CHH context: 303174 Total C to T conversions in CpG context: 287332 Total C to T conversions in CHG context: 1613757 Total C to T conversions in CHH context: 4622817 C methylated in CpG context: 71.2% C methylated in CHG context: 2.8% C methylated in CHH context: 6.2%