Bismark Processing Report

zr2096_3_s1_R1_val_1.fq.gz and zr2096_3_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 526410
Pairs without alignments under any condition 249675
Pairs that did not map uniquely 223915
Genomic sequence context not extractable (edges of chromosomes) 1

Cytosine Methylation

Total C's analysed 14440042
Methylated C's in CpG context 1612313
Methylated C's in CHG context 77322
Methylated C's in CHH context 361714
Methylated C's in Unknown context 36630
Unmethylated C's in CpG context 469203
Unmethylated C's in CHG context 3140194
Unmethylated C's in CHH context 8779296
Unmethylated C's in Unknown context 172384
Percentage methylation (CpG context) 77.5%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 4.0%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 131363 original top strand
CTOT 131574 complementary to original top strand
CTOB 131909 complementary to original bottom strand
OB 131563 original bottom strand