zr2096_3_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 525048 lines in total Total number of methylation call strings processed: 1050096 Final Cytosine Methylation Report ================================= Total number of C's analysed: 9507192 Total methylated C's in CpG context: 1049593 Total methylated C's in CHG context: 52867 Total methylated C's in CHH context: 226946 Total C to T conversions in CpG context: 312579 Total C to T conversions in CHG context: 2054583 Total C to T conversions in CHH context: 5810624 C methylated in CpG context: 77.1% C methylated in CHG context: 2.5% C methylated in CHH context: 3.8%