Bismark Processing Report

zr2096_4_s1_R1_val_1.fq.gz and zr2096_4_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 541137
Pairs without alignments under any condition 234921
Pairs that did not map uniquely 223942
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 13656928
Methylated C's in CpG context 1167119
Methylated C's in CHG context 68888
Methylated C's in CHH context 408851
Methylated C's in Unknown context 37082
Unmethylated C's in CpG context 579377
Unmethylated C's in CHG context 2907466
Unmethylated C's in CHH context 8525227
Unmethylated C's in Unknown context 172449
Percentage methylation (CpG context) 66.8%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 4.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 137788 original top strand
CTOT 132258 complementary to original top strand
CTOB 133147 complementary to original bottom strand
OB 137944 original bottom strand