CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7938 4853 62.06 12791 2 8917 4469 66.61 13386 3 8137 4506 64.36 12643 4 7427 4379 62.91 11806 5 7591 4294 63.87 11885 6 7551 4167 64.44 11718 7 7854 4568 63.23 12422 8 7793 4189 65.04 11982 9 7915 4130 65.71 12045 10 8232 4263 65.88 12495 11 8441 4292 66.29 12733 12 8222 4193 66.23 12415 13 8323 4229 66.31 12552 14 8263 4133 66.66 12396 15 8360 4174 66.70 12534 16 8462 4124 67.23 12586 17 8558 4226 66.94 12784 18 8505 4108 67.43 12613 19 8526 4030 67.90 12556 20 8457 4087 67.42 12544 21 8445 4129 67.16 12574 22 8496 4035 67.80 12531 23 8468 4093 67.42 12561 24 8603 4123 67.60 12726 25 8888 4066 68.61 12954 26 8649 4175 67.44 12824 27 8527 4076 67.66 12603 28 8747 4136 67.90 12883 29 8681 4019 68.35 12700 30 8554 4025 68.00 12579 31 8616 4036 68.10 12652 32 8512 4125 67.36 12637 33 8620 3965 68.49 12585 34 8660 4016 68.32 12676 35 8498 3940 68.32 12438 36 8572 3878 68.85 12450 37 8496 3950 68.26 12446 38 8440 4050 67.57 12490 39 8269 3958 67.63 12227 40 8387 3930 68.09 12317 41 8193 3897 67.77 12090 42 8203 3817 68.24 12020 43 7984 3818 67.65 11802 44 7984 3846 67.49 11830 45 7834 3811 67.27 11645 46 7907 3667 68.32 11574 47 7689 3634 67.91 11323 48 7585 3557 68.08 11142 49 7391 3613 67.17 11004 50 7337 3551 67.39 10888 51 7193 3504 67.24 10697 52 7294 3408 68.16 10702 53 7124 3479 67.19 10603 54 7082 3342 67.94 10424 55 6933 3407 67.05 10340 56 6811 3258 67.64 10069 57 6813 3403 66.69 10216 58 6524 3318 66.29 9842 59 6602 3213 67.26 9815 60 6588 3124 67.83 9712 61 6284 3210 66.19 9494 62 6215 3135 66.47 9350 63 6005 2850 67.81 8855 64 5880 2917 66.84 8797 65 5784 2940 66.30 8724 66 5575 2902 65.77 8477 67 5543 2816 66.31 8359 68 5465 2729 66.70 8194 69 5449 2772 66.28 8221 70 5294 2740 65.89 8034 71 5014 2619 65.69 7633 72 4994 2640 65.42 7634 73 4897 2555 65.71 7452 74 4686 2558 64.69 7244 75 4561 2445 65.10 7006 76 4424 2330 65.50 6754 77 4374 2411 64.47 6785 78 3821 2209 63.37 6030 79 3227 1893 63.03 5120 80 1561 849 64.77 2410 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2094 19628 9.64 21722 2 1178 20463 5.44 21641 3 1016 20475 4.73 21491 4 693 20574 3.26 21267 5 763 19784 3.71 20547 6 856 19774 4.15 20630 7 650 20191 3.12 20841 8 656 20773 3.06 21429 9 579 19911 2.83 20490 10 566 20354 2.71 20920 11 573 20089 2.77 20662 12 522 20561 2.48 21083 13 510 20245 2.46 20755 14 506 20532 2.41 21038 15 466 20814 2.19 21280 16 497 20871 2.33 21368 17 493 20616 2.34 21109 18 497 21116 2.30 21613 19 464 20942 2.17 21406 20 446 21210 2.06 21656 21 443 21508 2.02 21951 22 466 21083 2.16 21549 23 464 21331 2.13 21795 24 490 21522 2.23 22012 25 496 21134 2.29 21630 26 463 21183 2.14 21646 27 403 21576 1.83 21979 28 395 21010 1.85 21405 29 439 21665 1.99 22104 30 432 21475 1.97 21907 31 429 21501 1.96 21930 32 438 21332 2.01 21770 33 392 21483 1.79 21875 34 456 21141 2.11 21597 35 440 21081 2.04 21521 36 388 20815 1.83 21203 37 425 20569 2.02 20994 38 426 20507 2.04 20933 39 415 20782 1.96 21197 40 380 20208 1.85 20588 41 431 20180 2.09 20611 42 394 20078 1.92 20472 43 351 19695 1.75 20046 44 351 19421 1.78 19772 45 352 19614 1.76 19966 46 339 19255 1.73 19594 47 376 19161 1.92 19537 48 368 18863 1.91 19231 49 360 18661 1.89 19021 50 359 18091 1.95 18450 51 361 18563 1.91 18924 52 304 17717 1.69 18021 53 345 17455 1.94 17800 54 323 17420 1.82 17743 55 315 17219 1.80 17534 56 320 17072 1.84 17392 57 297 16541 1.76 16838 58 290 16495 1.73 16785 59 261 16244 1.58 16505 60 288 15800 1.79 16088 61 283 15554 1.79 15837 62 305 15397 1.94 15702 63 289 15348 1.85 15637 64 263 14642 1.76 14905 65 274 14474 1.86 14748 66 256 14243 1.77 14499 67 266 14001 1.86 14267 68 263 13623 1.89 13886 69 236 13565 1.71 13801 70 242 13303 1.79 13545 71 235 12969 1.78 13204 72 252 12604 1.96 12856 73 244 12443 1.92 12687 74 270 12231 2.16 12501 75 280 12075 2.27 12355 76 231 11614 1.95 11845 77 208 10988 1.86 11196 78 210 10243 2.01 10453 79 200 8158 2.39 8358 80 74 4092 1.78 4166 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5619 61507 8.37 67126 2 5547 61435 8.28 66982 3 4804 61973 7.19 66777 4 4226 62129 6.37 66355 5 4418 60800 6.77 65218 6 4665 57918 7.45 62583 7 3960 58316 6.36 62276 8 3858 57798 6.26 61656 9 4140 58235 6.64 62375 10 3883 59647 6.11 63530 11 3986 58419 6.39 62405 12 3810 58521 6.11 62331 13 3989 59686 6.26 63675 14 3778 59710 5.95 63488 15 3938 60833 6.08 64771 16 3860 61135 5.94 64995 17 3784 60861 5.85 64645 18 3834 61859 5.84 65693 19 3829 62512 5.77 66341 20 3641 61972 5.55 65613 21 3888 62553 5.85 66441 22 3620 62062 5.51 65682 23 3532 62476 5.35 66008 24 3375 62255 5.14 65630 25 3538 62451 5.36 65989 26 3272 62422 4.98 65694 27 3558 62439 5.39 65997 28 3476 63056 5.22 66532 29 3367 62438 5.12 65805 30 3273 62135 5.00 65408 31 3276 63260 4.92 66536 32 3106 61536 4.80 64642 33 3142 61637 4.85 64779 34 2938 62171 4.51 65109 35 2925 61643 4.53 64568 36 2790 60930 4.38 63720 37 2761 60911 4.34 63672 38 2697 60471 4.27 63168 39 2674 60379 4.24 63053 40 2500 60958 3.94 63458 41 2568 60089 4.10 62657 42 2424 58833 3.96 61257 43 2451 58820 4.00 61271 44 2261 57874 3.76 60135 45 2233 56790 3.78 59023 46 2029 56785 3.45 58814 47 2098 56188 3.60 58286 48 2004 56039 3.45 58043 49 1931 55148 3.38 57079 50 1828 53652 3.29 55480 51 1815 53233 3.30 55048 52 1756 52874 3.21 54630 53 1702 50801 3.24 52503 54 1656 50547 3.17 52203 55 1612 50077 3.12 51689 56 1489 49100 2.94 50589 57 1455 48816 2.89 50271 58 1404 47969 2.84 49373 59 1391 47321 2.86 48712 60 1355 46413 2.84 47768 61 1283 45868 2.72 47151 62 1253 44552 2.74 45805 63 1147 43980 2.54 45127 64 1231 43909 2.73 45140 65 1138 42621 2.60 43759 66 1108 41341 2.61 42449 67 1140 41214 2.69 42354 68 1087 40603 2.61 41690 69 1059 39659 2.60 40718 70 1052 38982 2.63 40034 71 994 38162 2.54 39156 72 990 37534 2.57 38524 73 966 36433 2.58 37399 74 971 35507 2.66 36478 75 912 34513 2.57 35425 76 960 33753 2.77 34713 77 907 32414 2.72 33321 78 861 30262 2.77 31123 79 648 24323 2.60 24971 80 312 11546 2.63 11858 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4996 3355 59.83 8351 2 4960 2734 64.47 7694 3 4405 2444 64.32 6849 4 3411 2306 59.66 5717 5 3462 2312 59.96 5774 6 3283 2131 60.64 5414 7 3363 2226 60.17 5589 8 3222 1997 61.74 5219 9 3294 1918 63.20 5212 10 3286 1999 62.18 5285 11 3315 1864 64.01 5179 12 3124 1831 63.05 4955 13 2986 1817 62.17 4803 14 3119 1752 64.03 4871 15 3076 1669 64.83 4745 16 2950 1630 64.41 4580 17 2765 1580 63.64 4345 18 2843 1504 65.40 4347 19 2797 1492 65.21 4289 20 2528 1442 63.68 3970 21 2509 1395 64.27 3904 22 2510 1367 64.74 3877 23 2451 1313 65.12 3764 24 2424 1317 64.80 3741 25 2462 1256 66.22 3718 26 2340 1283 64.59 3623 27 2287 1184 65.89 3471 28 2180 1123 66.00 3303 29 2193 1120 66.19 3313 30 2056 1068 65.81 3124 31 1969 1085 64.47 3054 32 2056 1098 65.19 3154 33 2008 1059 65.47 3067 34 2079 1039 66.68 3118 35 1899 961 66.40 2860 36 1890 941 66.76 2831 37 1819 985 64.87 2804 38 1811 898 66.85 2709 39 1759 869 66.93 2628 40 1693 883 65.72 2576 41 1663 843 66.36 2506 42 1581 793 66.60 2374 43 1525 753 66.94 2278 44 1530 779 66.26 2309 45 1514 710 68.08 2224 46 1421 749 65.48 2170 47 1387 769 64.33 2156 48 1347 672 66.72 2019 49 1325 663 66.65 1988 50 1342 681 66.34 2023 51 1240 651 65.57 1891 52 1195 637 65.23 1832 53 1142 617 64.92 1759 54 1130 598 65.39 1728 55 1139 583 66.14 1722 56 1032 554 65.07 1586 57 1061 583 64.54 1644 58 1013 551 64.77 1564 59 961 514 65.15 1475 60 964 472 67.13 1436 61 956 551 63.44 1507 62 941 465 66.93 1406 63 887 482 64.79 1369 64 904 453 66.62 1357 65 838 437 65.73 1275 66 813 435 65.14 1248 67 764 413 64.91 1177 68 723 433 62.54 1156 69 765 406 65.33 1171 70 713 395 64.35 1108 71 781 407 65.74 1188 72 701 383 64.67 1084 73 675 368 64.72 1043 74 603 345 63.61 948 75 647 366 63.87 1013 76 586 317 64.89 903 77 558 339 62.21 897 78 518 311 62.48 829 79 459 300 60.47 759 80 317 237 57.22 554 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1654 13417 10.97 15071 2 655 11131 5.56 11786 3 774 10844 6.66 11618 4 330 10581 3.02 10911 5 412 9116 4.32 9528 6 486 9211 5.01 9697 7 327 9154 3.45 9481 8 333 9105 3.53 9438 9 255 8537 2.90 8792 10 284 8433 3.26 8717 11 268 8285 3.13 8553 12 214 8449 2.47 8663 13 232 8222 2.74 8454 14 185 7952 2.27 8137 15 222 7865 2.75 8087 16 194 7553 2.50 7747 17 189 7361 2.50 7550 18 186 7047 2.57 7233 19 157 6927 2.22 7084 20 162 6734 2.35 6896 21 142 6541 2.12 6683 22 145 6427 2.21 6572 23 141 6303 2.19 6444 24 161 6292 2.49 6453 25 131 5958 2.15 6089 26 111 5844 1.86 5955 27 140 5862 2.33 6002 28 102 5769 1.74 5871 29 108 5684 1.86 5792 30 112 5378 2.04 5490 31 97 5295 1.80 5392 32 124 5131 2.36 5255 33 86 5206 1.63 5292 34 80 4949 1.59 5029 35 82 4834 1.67 4916 36 83 4689 1.74 4772 37 78 4529 1.69 4607 38 65 4521 1.42 4586 39 61 4498 1.34 4559 40 75 4369 1.69 4444 41 70 4240 1.62 4310 42 60 4189 1.41 4249 43 71 3990 1.75 4061 44 59 3890 1.49 3949 45 47 3821 1.22 3868 46 63 3703 1.67 3766 47 57 3551 1.58 3608 48 72 3466 2.04 3538 49 58 3392 1.68 3450 50 44 3191 1.36 3235 51 40 3248 1.22 3288 52 59 3031 1.91 3090 53 40 2988 1.32 3028 54 49 2965 1.63 3014 55 52 2871 1.78 2923 56 36 2887 1.23 2923 57 34 2767 1.21 2801 58 41 2640 1.53 2681 59 34 2557 1.31 2591 60 42 2591 1.60 2633 61 43 2503 1.69 2546 62 43 2377 1.78 2420 63 37 2414 1.51 2451 64 34 2243 1.49 2277 65 36 2185 1.62 2221 66 37 2056 1.77 2093 67 35 2077 1.66 2112 68 32 2000 1.57 2032 69 33 2005 1.62 2038 70 30 1925 1.53 1955 71 30 1929 1.53 1959 72 32 1833 1.72 1865 73 41 1749 2.29 1790 74 27 1666 1.59 1693 75 27 1649 1.61 1676 76 31 1616 1.88 1647 77 19 1596 1.18 1615 78 25 1395 1.76 1420 79 22 1344 1.61 1366 80 16 854 1.84 870 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3588 43375 7.64 46963 2 2594 34226 7.05 36820 3 1818 32161 5.35 33979 4 1313 30251 4.16 31564 5 1459 28824 4.82 30283 6 1857 26684 6.51 28541 7 1119 26332 4.08 27451 8 1136 25318 4.29 26454 9 1186 25854 4.39 27040 10 1144 25019 4.37 26163 11 1042 23840 4.19 24882 12 932 23878 3.76 24810 13 917 23572 3.74 24489 14 834 23356 3.45 24190 15 850 23375 3.51 24225 16 791 23157 3.30 23948 17 757 22335 3.28 23092 18 714 22041 3.14 22755 19 683 21403 3.09 22086 20 640 20587 3.02 21227 21 643 20186 3.09 20829 22 591 19558 2.93 20149 23 525 19036 2.68 19561 24 571 18745 2.96 19316 25 511 18508 2.69 19019 26 495 18056 2.67 18551 27 472 17852 2.58 18324 28 462 17470 2.58 17932 29 404 16888 2.34 17292 30 438 16618 2.57 17056 31 395 16723 2.31 17118 32 411 15903 2.52 16314 33 409 15643 2.55 16052 34 379 15158 2.44 15537 35 358 14897 2.35 15255 36 358 14771 2.37 15129 37 292 14245 2.01 14537 38 313 13808 2.22 14121 39 304 13596 2.19 13900 40 295 13328 2.17 13623 41 285 13101 2.13 13386 42 251 12691 1.94 12942 43 277 12352 2.19 12629 44 262 11892 2.16 12154 45 250 11760 2.08 12010 46 240 11401 2.06 11641 47 227 11091 2.01 11318 48 244 11009 2.17 11253 49 218 10681 2.00 10899 50 234 10203 2.24 10437 51 205 9998 2.01 10203 52 236 10077 2.29 10313 53 184 9338 1.93 9522 54 198 9274 2.09 9472 55 205 9165 2.19 9370 56 190 8831 2.11 9021 57 195 8679 2.20 8874 58 187 8485 2.16 8672 59 175 8316 2.06 8491 60 193 7914 2.38 8107 61 153 7549 1.99 7702 62 148 7463 1.94 7611 63 151 7346 2.01 7497 64 143 7292 1.92 7435 65 153 6825 2.19 6978 66 138 6786 1.99 6924 67 146 6544 2.18 6690 68 134 6516 2.02 6650 69 143 6522 2.15 6665 70 149 6106 2.38 6255 71 119 6010 1.94 6129 72 124 5877 2.07 6001 73 121 5541 2.14 5662 74 119 5303 2.19 5422 75 115 5307 2.12 5422 76 124 5093 2.38 5217 77 115 4920 2.28 5035 78 110 4550 2.36 4660 79 95 4082 2.27 4177 80 51 2868 1.75 2919