Bismark Processing Report

zr2096_5_s1_R1_val_1.fq.gz and zr2096_5_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 520106
Pairs without alignments under any condition 278464
Pairs that did not map uniquely 201430
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 13613606
Methylated C's in CpG context 1168935
Methylated C's in CHG context 74696
Methylated C's in CHH context 406740
Methylated C's in Unknown context 40389
Unmethylated C's in CpG context 543270
Unmethylated C's in CHG context 2814533
Unmethylated C's in CHH context 8605432
Unmethylated C's in Unknown context 174268
Percentage methylation (CpG context) 68.3%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 4.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 134098 original top strand
CTOT 126227 complementary to original top strand
CTOB 126218 complementary to original bottom strand
OB 133563 original bottom strand