CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7180 4427 61.86 11607 2 7795 4329 64.29 12124 3 7774 4123 65.34 11897 4 7282 3922 64.99 11204 5 7492 3992 65.24 11484 6 7458 3668 67.03 11126 7 7601 4080 65.07 11681 8 7477 3820 66.19 11297 9 7603 3684 67.36 11287 10 7836 3796 67.37 11632 11 8035 3889 67.39 11924 12 7842 3730 67.77 11572 13 8090 3760 68.27 11850 14 8174 3862 67.91 12036 15 8164 3789 68.30 11953 16 8261 3767 68.68 12028 17 8173 3905 67.67 12078 18 8299 3663 69.38 11962 19 8333 3761 68.90 12094 20 8221 3753 68.66 11974 21 8337 3738 69.04 12075 22 8365 3722 69.21 12087 23 8335 3773 68.84 12108 24 8439 3683 69.62 12122 25 8558 3847 68.99 12405 26 8460 3755 69.26 12215 27 8277 3732 68.92 12009 28 8451 3909 68.37 12360 29 8337 3884 68.22 12221 30 8349 3736 69.09 12085 31 8587 3740 69.66 12327 32 8467 3766 69.21 12233 33 8275 3654 69.37 11929 34 8729 3741 70.00 12470 35 8518 3713 69.64 12231 36 8448 3679 69.66 12127 37 8375 3661 69.58 12036 38 8405 3618 69.91 12023 39 8439 3671 69.69 12110 40 8305 3624 69.62 11929 41 8171 3515 69.92 11686 42 8073 3566 69.36 11639 43 8056 3600 69.11 11656 44 8003 3604 68.95 11607 45 7880 3464 69.46 11344 46 8053 3497 69.72 11550 47 7866 3428 69.65 11294 48 7581 3409 68.98 10990 49 7755 3547 68.62 11302 50 7507 3323 69.32 10830 51 7360 3320 68.91 10680 52 7313 3341 68.64 10654 53 7253 3281 68.85 10534 54 7218 3241 69.01 10459 55 7272 3264 69.02 10536 56 6952 3297 67.83 10249 57 7051 3204 68.76 10255 58 6910 3124 68.87 10034 59 6693 3133 68.12 9826 60 6779 3092 68.68 9871 61 6418 2940 68.58 9358 62 6395 2948 68.45 9343 63 6289 2895 68.48 9184 64 6244 2912 68.20 9156 65 6077 2851 68.07 8928 66 5977 2834 67.84 8811 67 5929 2806 67.88 8735 68 5967 2786 68.17 8753 69 5686 2692 67.87 8378 70 5591 2646 67.88 8237 71 5644 2670 67.89 8314 72 5338 2623 67.05 7961 73 5318 2619 67.00 7937 74 5159 2468 67.64 7627 75 5009 2384 67.75 7393 76 4888 2438 66.72 7326 77 4613 2368 66.08 6981 78 4375 2202 66.52 6577 79 3410 1856 64.76 5266 80 1658 849 66.13 2507 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1570 19027 7.62 20597 2 1068 19362 5.23 20430 3 925 19263 4.58 20188 4 694 18758 3.57 19452 5 743 18594 3.84 19337 6 801 18918 4.06 19719 7 641 18811 3.30 19452 8 640 19173 3.23 19813 9 621 18659 3.22 19280 10 613 18665 3.18 19278 11 603 18465 3.16 19068 12 562 19203 2.84 19765 13 617 18992 3.15 19609 14 642 19020 3.27 19662 15 574 19612 2.84 20186 16 554 19414 2.77 19968 17 551 19502 2.75 20053 18 564 19960 2.75 20524 19 539 19748 2.66 20287 20 521 19544 2.60 20065 21 522 19796 2.57 20318 22 532 19742 2.62 20274 23 514 19920 2.52 20434 24 508 20305 2.44 20813 25 532 19900 2.60 20432 26 504 19940 2.47 20444 27 466 20198 2.26 20664 28 509 19952 2.49 20461 29 492 20397 2.36 20889 30 486 20305 2.34 20791 31 457 20123 2.22 20580 32 464 20515 2.21 20979 33 497 20340 2.39 20837 34 444 19942 2.18 20386 35 466 20091 2.27 20557 36 477 20219 2.30 20696 37 430 19663 2.14 20093 38 438 19809 2.16 20247 39 408 19926 2.01 20334 40 423 19628 2.11 20051 41 413 19614 2.06 20027 42 415 19509 2.08 19924 43 439 19082 2.25 19521 44 440 19071 2.26 19511 45 408 19146 2.09 19554 46 436 18767 2.27 19203 47 450 18644 2.36 19094 48 416 18516 2.20 18932 49 408 18294 2.18 18702 50 401 17942 2.19 18343 51 424 17933 2.31 18357 52 374 17809 2.06 18183 53 346 17362 1.95 17708 54 384 17463 2.15 17847 55 375 16869 2.17 17244 56 375 16896 2.17 17271 57 359 17142 2.05 17501 58 334 16224 2.02 16558 59 371 16395 2.21 16766 60 335 16319 2.01 16654 61 316 15872 1.95 16188 62 358 15426 2.27 15784 63 325 15282 2.08 15607 64 346 14859 2.28 15205 65 328 14625 2.19 14953 66 337 14599 2.26 14936 67 302 14114 2.09 14416 68 327 13988 2.28 14315 69 282 13832 2.00 14114 70 337 13448 2.44 13785 71 272 13265 2.01 13537 72 317 13068 2.37 13385 73 270 12849 2.06 13119 74 281 12534 2.19 12815 75 276 12507 2.16 12783 76 284 11979 2.32 12263 77 282 11613 2.37 11895 78 273 10702 2.49 10975 79 219 8611 2.48 8830 80 105 4152 2.47 4257 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5648 61396 8.42 67044 2 5016 61561 7.53 66577 3 4883 62091 7.29 66974 4 4442 60990 6.79 65432 5 4219 59930 6.58 64149 6 4297 57544 6.95 61841 7 4057 57656 6.57 61713 8 3580 56750 5.93 60330 9 3978 57952 6.42 61930 10 3906 58527 6.26 62433 11 3722 57477 6.08 61199 12 3802 57793 6.17 61595 13 3942 58011 6.36 61953 14 3688 57400 6.04 61088 15 3704 58553 5.95 62257 16 3680 59337 5.84 63017 17 3576 58764 5.74 62340 18 3649 59825 5.75 63474 19 3641 60760 5.65 64401 20 3549 60209 5.57 63758 21 3595 60774 5.58 64369 22 3520 60552 5.49 64072 23 3372 60453 5.28 63825 24 3357 60961 5.22 64318 25 3328 60862 5.18 64190 26 3284 60789 5.13 64073 27 3244 61498 5.01 64742 28 3221 61512 4.98 64733 29 3317 60661 5.18 63978 30 3090 60410 4.87 63500 31 3103 62679 4.72 65782 32 2953 61041 4.61 63994 33 2895 61071 4.53 63966 34 2871 61267 4.48 64138 35 2799 61165 4.38 63964 36 2854 60547 4.50 63401 37 2760 61041 4.33 63801 38 2558 60377 4.06 62935 39 2565 60585 4.06 63150 40 2654 60593 4.20 63247 41 2479 60536 3.93 63015 42 2408 59566 3.89 61974 43 2373 59719 3.82 62092 44 2357 58003 3.90 60360 45 2268 57857 3.77 60125 46 2208 57880 3.67 60088 47 2137 57055 3.61 59192 48 2076 56843 3.52 58919 49 2152 56879 3.65 59031 50 1879 54984 3.30 56863 51 1928 54310 3.43 56238 52 1823 54511 3.24 56334 53 1779 52645 3.27 54424 54 1658 51646 3.11 53304 55 1695 51898 3.16 53593 56 1648 51101 3.12 52749 57 1564 51141 2.97 52705 58 1556 50037 3.02 51593 59 1517 49266 2.99 50783 60 1426 48758 2.84 50184 61 1356 47604 2.77 48960 62 1334 46841 2.77 48175 63 1317 46733 2.74 48050 64 1329 46459 2.78 47788 65 1278 44801 2.77 46079 66 1231 44098 2.72 45329 67 1270 44049 2.80 45319 68 1194 43421 2.68 44615 69 1221 42459 2.80 43680 70 1212 41584 2.83 42796 71 1135 40947 2.70 42082 72 1167 40189 2.82 41356 73 1139 38992 2.84 40131 74 1098 37982 2.81 39080 75 1107 37562 2.86 38669 76 1046 36643 2.78 37689 77 1091 35238 3.00 36329 78 999 32847 2.95 33846 79 855 27218 3.05 28073 80 363 12390 2.85 12753 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4972 3298 60.12 8270 2 4559 2717 62.66 7276 3 4134 2520 62.13 6654 4 3658 2235 62.07 5893 5 3659 2098 63.56 5757 6 3621 2085 63.46 5706 7 3674 2297 61.53 5971 8 3541 1932 64.70 5473 9 3423 1890 64.43 5313 10 3410 1906 64.15 5316 11 3484 1836 65.49 5320 12 3330 1818 64.69 5148 13 3213 1786 64.27 4999 14 3302 1752 65.33 5054 15 3336 1692 66.35 5028 16 3167 1653 65.71 4820 17 3015 1684 64.16 4699 18 2986 1499 66.58 4485 19 2997 1504 66.59 4501 20 2891 1457 66.49 4348 21 2841 1482 65.72 4323 22 2720 1301 67.64 4021 23 2743 1461 65.25 4204 24 2662 1350 66.35 4012 25 2680 1357 66.39 4037 26 2519 1324 65.55 3843 27 2433 1246 66.13 3679 28 2493 1276 66.14 3769 29 2402 1203 66.63 3605 30 2278 1154 66.38 3432 31 2324 1113 67.62 3437 32 2329 1105 67.82 3434 33 2181 1050 67.50 3231 34 2202 1085 66.99 3287 35 2191 1022 68.19 3213 36 2082 1027 66.97 3109 37 1980 1043 65.50 3023 38 2045 985 67.49 3030 39 1990 916 68.48 2906 40 1934 928 67.58 2862 41 1816 877 67.43 2693 42 1684 892 65.37 2576 43 1763 831 67.96 2594 44 1722 827 67.56 2549 45 1553 761 67.11 2314 46 1608 783 67.25 2391 47 1612 796 66.94 2408 48 1565 738 67.95 2303 49 1506 719 67.69 2225 50 1488 712 67.64 2200 51 1369 655 67.64 2024 52 1323 648 67.12 1971 53 1325 608 68.55 1933 54 1299 628 67.41 1927 55 1301 640 67.03 1941 56 1194 620 65.82 1814 57 1181 622 65.50 1803 58 1150 577 66.59 1727 59 1126 542 67.51 1668 60 1144 550 67.53 1694 61 1067 537 66.52 1604 62 1018 527 65.89 1545 63 971 505 65.79 1476 64 992 525 65.39 1517 65 984 458 68.24 1442 66 877 448 66.19 1325 67 886 409 68.42 1295 68 902 432 67.62 1334 69 821 380 68.36 1201 70 813 407 66.64 1220 71 826 414 66.61 1240 72 800 417 65.74 1217 73 763 380 66.75 1143 74 732 396 64.89 1128 75 676 363 65.06 1039 76 691 387 64.10 1078 77 590 368 61.59 958 78 581 327 63.99 908 79 496 261 65.52 757 80 356 212 62.68 568 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1071 13646 7.28 14717 2 583 11907 4.67 12490 3 538 10946 4.68 11484 4 411 10239 3.86 10650 5 421 9461 4.26 9882 6 479 9431 4.83 9910 7 332 9367 3.42 9699 8 313 9318 3.25 9631 9 324 8901 3.51 9225 10 297 8641 3.32 8938 11 295 8382 3.40 8677 12 283 8401 3.26 8684 13 245 8149 2.92 8394 14 245 7908 3.01 8153 15 257 8008 3.11 8265 16 228 7817 2.83 8045 17 216 7469 2.81 7685 18 220 7456 2.87 7676 19 178 7243 2.40 7421 20 191 7218 2.58 7409 21 196 7037 2.71 7233 22 173 6724 2.51 6897 23 192 6583 2.83 6775 24 169 6700 2.46 6869 25 177 6318 2.73 6495 26 158 6280 2.45 6438 27 167 6313 2.58 6480 28 143 6044 2.31 6187 29 134 5999 2.18 6133 30 124 5834 2.08 5958 31 136 5693 2.33 5829 32 107 5654 1.86 5761 33 133 5492 2.36 5625 34 122 5351 2.23 5473 35 125 5294 2.31 5419 36 123 5012 2.40 5135 37 105 4986 2.06 5091 38 105 4833 2.13 4938 39 85 4798 1.74 4883 40 105 4618 2.22 4723 41 86 4615 1.83 4701 42 91 4484 1.99 4575 43 80 4247 1.85 4327 44 102 4219 2.36 4321 45 83 4068 2.00 4151 46 68 3893 1.72 3961 47 80 3983 1.97 4063 48 58 3868 1.48 3926 49 51 3703 1.36 3754 50 71 3614 1.93 3685 51 68 3570 1.87 3638 52 63 3519 1.76 3582 53 69 3295 2.05 3364 54 56 3174 1.73 3230 55 62 3206 1.90 3268 56 50 3145 1.56 3195 57 46 3002 1.51 3048 58 66 2840 2.27 2906 59 56 2887 1.90 2943 60 43 2864 1.48 2907 61 44 2656 1.63 2700 62 49 2687 1.79 2736 63 54 2498 2.12 2552 64 63 2456 2.50 2519 65 53 2387 2.17 2440 66 46 2341 1.93 2387 67 50 2266 2.16 2316 68 51 2147 2.32 2198 69 36 2177 1.63 2213 70 47 2049 2.24 2096 71 41 2028 1.98 2069 72 42 2000 2.06 2042 73 42 1909 2.15 1951 74 45 1833 2.40 1878 75 39 1825 2.09 1864 76 31 1689 1.80 1720 77 32 1681 1.87 1713 78 32 1566 2.00 1598 79 32 1327 2.35 1359 80 18 940 1.88 958 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3533 45356 7.23 48889 2 2588 36851 6.56 39439 3 1927 35430 5.16 37357 4 1700 32957 4.91 34657 5 1541 31540 4.66 33081 6 1696 29270 5.48 30966 7 1341 28633 4.47 29974 8 1294 27995 4.42 29289 9 1320 27917 4.51 29237 10 1225 27965 4.20 29190 11 1130 26334 4.11 27464 12 1115 25771 4.15 26886 13 1068 25698 3.99 26766 14 981 25190 3.75 26171 15 976 24934 3.77 25910 16 931 24687 3.63 25618 17 869 23752 3.53 24621 18 905 23555 3.70 24460 19 838 23061 3.51 23899 20 793 22458 3.41 23251 21 769 22139 3.36 22908 22 673 21623 3.02 22296 23 696 21189 3.18 21885 24 619 21070 2.85 21689 25 670 20538 3.16 21208 26 652 19874 3.18 20526 27 603 19708 2.97 20311 28 553 19371 2.78 19924 29 581 18883 2.98 19464 30 506 18625 2.64 19131 31 558 18934 2.86 19492 32 459 17762 2.52 18221 33 449 17343 2.52 17792 34 473 17216 2.67 17689 35 477 16905 2.74 17382 36 426 16639 2.50 17065 37 388 16120 2.35 16508 38 387 15953 2.37 16340 39 366 15461 2.31 15827 40 333 15270 2.13 15603 41 331 15092 2.15 15423 42 316 14344 2.16 14660 43 325 14168 2.24 14493 44 302 13686 2.16 13988 45 290 13643 2.08 13933 46 316 13480 2.29 13796 47 269 12723 2.07 12992 48 290 12698 2.23 12988 49 295 12368 2.33 12663 50 243 11732 2.03 11975 51 266 11667 2.23 11933 52 254 11579 2.15 11833 53 217 11032 1.93 11249 54 252 10689 2.30 10941 55 243 10494 2.26 10737 56 194 10139 1.88 10333 57 214 10032 2.09 10246 58 202 9636 2.05 9838 59 220 9515 2.26 9735 60 175 9078 1.89 9253 61 204 8797 2.27 9001 62 182 8546 2.09 8728 63 182 8341 2.14 8523 64 180 8459 2.08 8639 65 156 8071 1.90 8227 66 160 7727 2.03 7887 67 182 7682 2.31 7864 68 155 7700 1.97 7855 69 162 7325 2.16 7487 70 166 6985 2.32 7151 71 154 6847 2.20 7001 72 137 6661 2.02 6798 73 163 6413 2.48 6576 74 129 6153 2.05 6282 75 126 5973 2.07 6099 76 126 5969 2.07 6095 77 130 5629 2.26 5759 78 128 5419 2.31 5547 79 116 4725 2.40 4841 80 82 3390 2.36 3472