Bismark Processing Report

zr2096_6_s1_R1_val_1.fq.gz and zr2096_6_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 545007
Pairs without alignments under any condition 227088
Pairs that did not map uniquely 227905
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 13938301
Methylated C's in CpG context 1349757
Methylated C's in CHG context 71272
Methylated C's in CHH context 402359
Methylated C's in Unknown context 39066
Unmethylated C's in CpG context 478109
Unmethylated C's in CHG context 2963255
Unmethylated C's in CHH context 8673549
Unmethylated C's in Unknown context 179065
Percentage methylation (CpG context) 73.8%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 4.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 142505 original top strand
CTOT 130385 complementary to original top strand
CTOB 129517 complementary to original bottom strand
OB 142600 original bottom strand