CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8854 4110 68.30 12964 2 9727 4053 70.59 13780 3 9148 3818 70.55 12966 4 8717 3610 70.71 12327 5 8824 3547 71.33 12371 6 8588 3424 71.50 12012 7 9252 3724 71.30 12976 8 8831 3430 72.03 12261 9 9023 3412 72.56 12435 10 9080 3373 72.91 12453 11 9521 3503 73.10 13024 12 9441 3553 72.66 12994 13 9654 3441 73.72 13095 14 9511 3431 73.49 12942 15 9584 3410 73.76 12994 16 9651 3312 74.45 12963 17 9724 3427 73.94 13151 18 9442 3347 73.83 12789 19 9805 3395 74.28 13200 20 9844 3293 74.93 13137 21 9931 3448 74.23 13379 22 9664 3450 73.69 13114 23 9845 3346 74.63 13191 24 9902 3387 74.51 13289 25 9806 3389 74.32 13195 26 10182 3342 75.29 13524 27 9856 3355 74.60 13211 28 9968 3367 74.75 13335 29 10015 3259 75.45 13274 30 9899 3283 75.09 13182 31 9998 3221 75.63 13219 32 10069 3294 75.35 13363 33 9847 3345 74.64 13192 34 10124 3384 74.95 13508 35 9904 3362 74.66 13266 36 9690 3229 75.01 12919 37 9726 3231 75.06 12957 38 9853 3247 75.21 13100 39 9721 3162 75.46 12883 40 9553 3196 74.93 12749 41 9616 3270 74.62 12886 42 9253 3082 75.01 12335 43 9300 3009 75.55 12309 44 9347 3009 75.65 12356 45 9163 3004 75.31 12167 46 9280 3026 75.41 12306 47 9104 2994 75.25 12098 48 8805 2925 75.06 11730 49 8579 2928 74.55 11507 50 8807 2935 75.00 11742 51 8517 2905 74.57 11422 52 8268 2780 74.84 11048 53 8212 2744 74.95 10956 54 8179 2830 74.29 11009 55 8274 2760 74.99 11034 56 8077 2730 74.74 10807 57 7989 2690 74.81 10679 58 7805 2661 74.57 10466 59 7717 2656 74.40 10373 60 7465 2589 74.25 10054 61 7291 2604 73.68 9895 62 7182 2534 73.92 9716 63 6981 2504 73.60 9485 64 6879 2478 73.52 9357 65 6740 2451 73.33 9191 66 6599 2376 73.53 8975 67 6636 2373 73.66 9009 68 6496 2347 73.46 8843 69 6258 2251 73.55 8509 70 6203 2308 72.88 8511 71 6199 2293 73.00 8492 72 5771 2190 72.49 7961 73 5758 2193 72.42 7951 74 5630 2120 72.65 7750 75 5553 2038 73.15 7591 76 5278 1973 72.79 7251 77 5141 2082 71.18 7223 78 4703 1875 71.50 6578 79 3742 1555 70.64 5297 80 1776 728 70.93 2504 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1956 19933 8.94 21889 2 1147 20295 5.35 21442 3 957 20634 4.43 21591 4 738 20437 3.49 21175 5 785 19813 3.81 20598 6 830 19730 4.04 20560 7 639 20185 3.07 20824 8 672 20915 3.11 21587 9 583 20074 2.82 20657 10 627 20446 2.98 21073 11 592 20418 2.82 21010 12 542 21058 2.51 21600 13 597 20550 2.82 21147 14 536 20633 2.53 21169 15 521 21028 2.42 21549 16 497 20802 2.33 21299 17 511 20631 2.42 21142 18 519 21678 2.34 22197 19 489 21198 2.25 21687 20 494 21012 2.30 21506 21 533 21133 2.46 21666 22 496 21521 2.25 22017 23 468 21552 2.13 22020 24 455 21725 2.05 22180 25 460 21872 2.06 22332 26 460 21364 2.11 21824 27 455 21627 2.06 22082 28 453 21787 2.04 22240 29 441 21673 1.99 22114 30 450 21718 2.03 22168 31 389 21817 1.75 22206 32 426 21621 1.93 22047 33 440 21767 1.98 22207 34 433 21751 1.95 22184 35 463 21492 2.11 21955 36 406 21235 1.88 21641 37 456 21066 2.12 21522 38 444 20581 2.11 21025 39 354 21295 1.64 21649 40 395 21284 1.82 21679 41 437 20602 2.08 21039 42 400 20922 1.88 21322 43 354 20380 1.71 20734 44 401 19959 1.97 20360 45 408 20271 1.97 20679 46 387 19749 1.92 20136 47 399 19637 1.99 20036 48 367 18998 1.90 19365 49 350 19085 1.80 19435 50 359 18534 1.90 18893 51 350 18857 1.82 19207 52 388 18280 2.08 18668 53 332 18008 1.81 18340 54 348 17989 1.90 18337 55 338 17747 1.87 18085 56 331 17329 1.87 17660 57 330 17333 1.87 17663 58 331 17323 1.87 17654 59 290 16657 1.71 16947 60 282 16447 1.69 16729 61 351 16184 2.12 16535 62 312 15518 1.97 15830 63 316 15792 1.96 16108 64 305 15289 1.96 15594 65 288 14893 1.90 15181 66 289 14825 1.91 15114 67 267 14298 1.83 14565 68 283 14075 1.97 14358 69 286 13923 2.01 14209 70 243 13679 1.75 13922 71 276 13482 2.01 13758 72 244 13189 1.82 13433 73 297 12852 2.26 13149 74 228 12434 1.80 12662 75 271 12410 2.14 12681 76 275 12010 2.24 12285 77 295 11422 2.52 11717 78 257 10495 2.39 10752 79 189 8734 2.12 8923 80 92 4170 2.16 4262 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5922 62141 8.70 68063 2 5433 61996 8.06 67429 3 4710 62746 6.98 67456 4 4427 62687 6.60 67114 5 4336 61163 6.62 65499 6 4383 58470 6.97 62853 7 3934 58829 6.27 62763 8 3847 57934 6.23 61781 9 4016 59049 6.37 63065 10 3901 59747 6.13 63648 11 3946 59156 6.25 63102 12 3904 59172 6.19 63076 13 3931 60181 6.13 64112 14 3714 60308 5.80 64022 15 3824 61166 5.88 64990 16 3748 61960 5.70 65708 17 3682 61721 5.63 65403 18 3660 62293 5.55 65953 19 3770 62860 5.66 66630 20 3575 62448 5.41 66023 21 3744 62919 5.62 66663 22 3515 62520 5.32 66035 23 3350 63057 5.04 66407 24 3478 62816 5.25 66294 25 3469 63043 5.22 66512 26 3311 63206 4.98 66517 27 3374 63643 5.03 67017 28 3320 63535 4.97 66855 29 3218 63490 4.82 66708 30 3208 62612 4.87 65820 31 3231 64167 4.79 67398 32 2963 63059 4.49 66022 33 2889 62098 4.45 64987 34 2856 63001 4.34 65857 35 2806 62411 4.30 65217 36 2781 61833 4.30 64614 37 2759 62051 4.26 64810 38 2688 61021 4.22 63709 39 2523 60751 3.99 63274 40 2588 61221 4.06 63809 41 2367 60669 3.75 63036 42 2347 59843 3.77 62190 43 2320 59702 3.74 62022 44 2226 58902 3.64 61128 45 2221 57943 3.69 60164 46 2080 57280 3.50 59360 47 1993 57178 3.37 59171 48 2008 57202 3.39 59210 49 1946 56377 3.34 58323 50 1873 54897 3.30 56770 51 1858 53973 3.33 55831 52 1761 54142 3.15 55903 53 1711 53081 3.12 54792 54 1614 51459 3.04 53073 55 1562 51383 2.95 52945 56 1511 50409 2.91 51920 57 1479 50431 2.85 51910 58 1437 49355 2.83 50792 59 1388 48469 2.78 49857 60 1363 47719 2.78 49082 61 1290 46722 2.69 48012 62 1256 45560 2.68 46816 63 1271 44984 2.75 46255 64 1180 44950 2.56 46130 65 1136 43928 2.52 45064 66 1137 43073 2.57 44210 67 1091 42744 2.49 43835 68 1100 42319 2.53 43419 69 1051 41390 2.48 42441 70 1047 40017 2.55 41064 71 986 39411 2.44 40397 72 953 38983 2.39 39936 73 1015 37596 2.63 38611 74 952 37000 2.51 37952 75 981 35750 2.67 36731 76 952 35320 2.62 36272 77 932 33627 2.70 34559 78 853 31199 2.66 32052 79 705 25733 2.67 26438 80 349 11768 2.88 12117 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5789 3060 65.42 8849 2 5528 2474 69.08 8002 3 4833 2225 68.48 7058 4 4040 2050 66.34 6090 5 3900 1977 66.36 5877 6 3830 1785 68.21 5615 7 4123 1871 68.79 5994 8 3791 1729 68.68 5520 9 3892 1671 69.96 5563 10 3847 1623 70.33 5470 11 3861 1661 69.92 5522 12 3679 1581 69.94 5260 13 3594 1513 70.37 5107 14 3654 1464 71.40 5118 15 3531 1492 70.30 5023 16 3410 1318 72.12 4728 17 3389 1365 71.29 4754 18 3313 1268 72.32 4581 19 3182 1254 71.73 4436 20 3143 1239 71.73 4382 21 3052 1215 71.53 4267 22 2947 1177 71.46 4124 23 2960 1143 72.14 4103 24 2849 1116 71.85 3965 25 2862 1080 72.60 3942 26 2660 1033 72.03 3693 27 2718 970 73.70 3688 28 2640 935 73.85 3575 29 2535 1039 70.93 3574 30 2429 866 73.72 3295 31 2503 866 74.30 3369 32 2380 843 73.84 3223 33 2339 859 73.14 3198 34 2306 800 74.24 3106 35 2277 777 74.56 3054 36 2169 716 75.18 2885 37 2168 758 74.09 2926 38 2151 745 74.27 2896 39 2124 697 75.29 2821 40 2000 676 74.74 2676 41 2015 689 74.52 2704 42 1857 666 73.60 2523 43 1805 636 73.95 2441 44 1798 608 74.73 2406 45 1791 634 73.86 2425 46 1703 546 75.72 2249 47 1673 583 74.16 2256 48 1607 561 74.12 2168 49 1607 587 73.25 2194 50 1544 494 75.76 2038 51 1439 537 72.82 1976 52 1468 451 76.50 1919 53 1463 423 77.57 1886 54 1363 461 74.73 1824 55 1414 492 74.19 1906 56 1365 431 76.00 1796 57 1269 428 74.78 1697 58 1249 438 74.04 1687 59 1185 404 74.58 1589 60 1158 381 75.24 1539 61 1098 420 72.33 1518 62 1028 391 72.45 1419 63 1041 385 73.00 1426 64 970 379 71.91 1349 65 1018 360 73.88 1378 66 952 334 74.03 1286 67 929 330 73.79 1259 68 892 333 72.82 1225 69 894 305 74.56 1199 70 881 301 74.53 1182 71 814 306 72.68 1120 72 887 295 75.04 1182 73 789 297 72.65 1086 74 805 296 73.12 1101 75 761 284 72.82 1045 76 679 267 71.78 946 77 687 258 72.70 945 78 608 229 72.64 837 79 518 217 70.48 735 80 387 154 71.53 541 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1525 14041 9.80 15566 2 659 11688 5.34 12347 3 634 11070 5.42 11704 4 373 10424 3.45 10797 5 395 9434 4.02 9829 6 505 9210 5.20 9715 7 315 9232 3.30 9547 8 317 9855 3.12 10172 9 284 8545 3.22 8829 10 299 8672 3.33 8971 11 280 8566 3.17 8846 12 221 8576 2.51 8797 13 244 8380 2.83 8624 14 215 7851 2.67 8066 15 249 8202 2.95 8451 16 235 7878 2.90 8113 17 184 7398 2.43 7582 18 168 7532 2.18 7700 19 203 7177 2.75 7380 20 165 6958 2.32 7123 21 174 6897 2.46 7071 22 167 6779 2.40 6946 23 153 6663 2.24 6816 24 144 6456 2.18 6600 25 135 6176 2.14 6311 26 126 5959 2.07 6085 27 137 6079 2.20 6216 28 127 5925 2.10 6052 29 122 5789 2.06 5911 30 102 5590 1.79 5692 31 126 5604 2.20 5730 32 109 5511 1.94 5620 33 100 5353 1.83 5453 34 89 5164 1.69 5253 35 80 4986 1.58 5066 36 91 4890 1.83 4981 37 74 4661 1.56 4735 38 71 4727 1.48 4798 39 90 4563 1.93 4653 40 69 4426 1.54 4495 41 86 4428 1.91 4514 42 63 4370 1.42 4433 43 60 4101 1.44 4161 44 67 4087 1.61 4154 45 66 3876 1.67 3942 46 61 3795 1.58 3856 47 56 3736 1.48 3792 48 54 3564 1.49 3618 49 75 3517 2.09 3592 50 52 3403 1.51 3455 51 58 3429 1.66 3487 52 42 3173 1.31 3215 53 58 3080 1.85 3138 54 38 3076 1.22 3114 55 34 2869 1.17 2903 56 38 2893 1.30 2931 57 48 2924 1.62 2972 58 43 2817 1.50 2860 59 49 2708 1.78 2757 60 38 2688 1.39 2726 61 32 2561 1.23 2593 62 43 2389 1.77 2432 63 38 2420 1.55 2458 64 40 2367 1.66 2407 65 43 2220 1.90 2263 66 44 2207 1.95 2251 67 29 2122 1.35 2151 68 36 2077 1.70 2113 69 40 2057 1.91 2097 70 34 1967 1.70 2001 71 32 1917 1.64 1949 72 31 1872 1.63 1903 73 34 1815 1.84 1849 74 25 1762 1.40 1787 75 29 1715 1.66 1744 76 23 1629 1.39 1652 77 39 1548 2.46 1587 78 23 1486 1.52 1509 79 27 1311 2.02 1338 80 20 877 2.23 897 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3675 44790 7.58 48465 2 2808 35471 7.34 38279 3 1961 33477 5.53 35438 4 1488 31575 4.50 33063 5 1548 30254 4.87 31802 6 1726 27780 5.85 29506 7 1229 27335 4.30 28564 8 1242 25886 4.58 27128 9 1193 26274 4.34 27467 10 1189 26220 4.34 27409 11 1074 25033 4.11 26107 12 921 24589 3.61 25510 13 969 24730 3.77 25699 14 902 24226 3.59 25128 15 869 23766 3.53 24635 16 820 23692 3.35 24512 17 748 23007 3.15 23755 18 737 22454 3.18 23191 19 733 21944 3.23 22677 20 686 21402 3.11 22088 21 681 20707 3.18 21388 22 647 20300 3.09 20947 23 598 20070 2.89 20668 24 564 19404 2.82 19968 25 577 19283 2.91 19860 26 507 18890 2.61 19397 27 515 18411 2.72 18926 28 522 17928 2.83 18450 29 441 17468 2.46 17909 30 462 16951 2.65 17413 31 435 17243 2.46 17678 32 395 16551 2.33 16946 33 380 16297 2.28 16677 34 411 15894 2.52 16305 35 369 15412 2.34 15781 36 358 15238 2.30 15596 37 359 14856 2.36 15215 38 295 14321 2.02 14616 39 308 14113 2.14 14421 40 307 13840 2.17 14147 41 301 13571 2.17 13872 42 299 13300 2.20 13599 43 262 12950 1.98 13212 44 268 12342 2.13 12610 45 271 12109 2.19 12380 46 244 12020 1.99 12264 47 266 11609 2.24 11875 48 222 11427 1.91 11649 49 218 11230 1.90 11448 50 224 10556 2.08 10780 51 234 10245 2.23 10479 52 202 10372 1.91 10574 53 204 9719 2.06 9923 54 227 9546 2.32 9773 55 207 9316 2.17 9523 56 178 9070 1.92 9248 57 188 8968 2.05 9156 58 171 8547 1.96 8718 59 166 8508 1.91 8674 60 169 8204 2.02 8373 61 172 8013 2.10 8185 62 152 7632 1.95 7784 63 172 7563 2.22 7735 64 140 7440 1.85 7580 65 157 7154 2.15 7311 66 142 6984 1.99 7126 67 132 6829 1.90 6961 68 129 6646 1.90 6775 69 141 6566 2.10 6707 70 125 6323 1.94 6448 71 121 5985 1.98 6106 72 124 6003 2.02 6127 73 108 5572 1.90 5680 74 119 5626 2.07 5745 75 118 5391 2.14 5509 76 121 5266 2.25 5387 77 89 4944 1.77 5033 78 102 4661 2.14 4763 79 79 4356 1.78 4435 80 61 2956 2.02 3017