Bismark Processing Report

zr2096_7_s1_R1_val_1.fq.gz and zr2096_7_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 518103
Pairs without alignments under any condition 286502
Pairs that did not map uniquely 195395
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 13806945
Methylated C's in CpG context 1263772
Methylated C's in CHG context 78374
Methylated C's in CHH context 384212
Methylated C's in Unknown context 36797
Unmethylated C's in CpG context 483667
Unmethylated C's in CHG context 2916755
Unmethylated C's in CHH context 8680165
Unmethylated C's in Unknown context 171742
Percentage methylation (CpG context) 72.3%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 4.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 131416 original top strand
CTOT 127670 complementary to original top strand
CTOB 127990 complementary to original bottom strand
OB 131027 original bottom strand