CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7892 4024 66.23 11916 2 8775 3915 69.15 12690 3 8162 3687 68.88 11849 4 7773 3693 67.79 11466 5 7765 3506 68.89 11271 6 7875 3379 69.98 11254 7 8413 3699 69.46 12112 8 8162 3433 70.39 11595 9 8244 3335 71.20 11579 10 8519 3388 71.55 11907 11 8556 3542 70.72 12098 12 8434 3357 71.53 11791 13 8652 3364 72.00 12016 14 8428 3373 71.42 11801 15 8774 3256 72.93 12030 16 8707 3357 72.17 12064 17 8530 3269 72.29 11799 18 8644 3361 72.00 12005 19 8648 3336 72.16 11984 20 8613 3190 72.97 11803 21 8877 3223 73.36 12100 22 8958 3469 72.08 12427 23 8890 3291 72.98 12181 24 8964 3283 73.19 12247 25 9004 3448 72.31 12452 26 9030 3253 73.52 12283 27 9064 3230 73.73 12294 28 8995 3271 73.33 12266 29 9011 3238 73.57 12249 30 8915 3231 73.40 12146 31 9111 3383 72.92 12494 32 9220 3245 73.97 12465 33 8993 3131 74.18 12124 34 9118 3282 73.53 12400 35 8915 3176 73.73 12091 36 8863 3188 73.55 12051 37 8998 3295 73.20 12293 38 8976 3244 73.45 12220 39 8792 3143 73.67 11935 40 9004 3141 74.14 12145 41 8798 3085 74.04 11883 42 8674 3130 73.48 11804 43 8842 3162 73.66 12004 44 8530 3088 73.42 11618 45 8544 3019 73.89 11563 46 8686 3047 74.03 11733 47 8507 3049 73.62 11556 48 8331 3057 73.16 11388 49 8254 3057 72.97 11311 50 8153 3030 72.91 11183 51 8061 3044 72.59 11105 52 8126 2847 74.05 10973 53 8206 2886 73.98 11092 54 8024 2861 73.72 10885 55 7943 2842 73.65 10785 56 7794 2904 72.85 10698 57 7568 2862 72.56 10430 58 7484 2850 72.42 10334 59 7475 2828 72.55 10303 60 7373 2693 73.25 10066 61 7447 2697 73.41 10144 62 7285 2709 72.89 9994 63 6942 2668 72.24 9610 64 7127 2662 72.81 9789 65 6768 2634 71.98 9402 66 6749 2592 72.25 9341 67 6788 2520 72.93 9308 68 6517 2587 71.58 9104 69 6361 2541 71.46 8902 70 6425 2478 72.17 8903 71 6279 2446 71.97 8725 72 6230 2446 71.81 8676 73 5799 2336 71.28 8135 74 5755 2360 70.92 8115 75 5852 2235 72.36 8087 76 5566 2190 71.76 7756 77 5261 2222 70.31 7483 78 4920 2112 69.97 7032 79 4113 1724 70.46 5837 80 1960 884 68.92 2844 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1928 19174 9.14 21102 2 1126 19182 5.54 20308 3 995 19526 4.85 20521 4 780 19260 3.89 20040 5 810 18842 4.12 19652 6 875 19327 4.33 20202 7 674 19331 3.37 20005 8 706 19612 3.47 20318 9 598 19259 3.01 19857 10 581 19123 2.95 19704 11 596 19284 3.00 19880 12 557 19826 2.73 20383 13 573 19489 2.86 20062 14 566 19365 2.84 19931 15 599 19979 2.91 20578 16 546 20016 2.66 20562 17 500 19844 2.46 20344 18 558 20332 2.67 20890 19 510 19807 2.51 20317 20 524 19930 2.56 20454 21 525 20414 2.51 20939 22 522 20278 2.51 20800 23 530 20188 2.56 20718 24 544 20721 2.56 21265 25 496 20297 2.39 20793 26 514 20520 2.44 21034 27 509 20862 2.38 21371 28 483 20667 2.28 21150 29 465 20634 2.20 21099 30 493 20770 2.32 21263 31 490 20735 2.31 21225 32 495 20743 2.33 21238 33 473 20914 2.21 21387 34 471 20409 2.26 20880 35 505 20862 2.36 21367 36 439 20423 2.10 20862 37 474 20130 2.30 20604 38 481 20425 2.30 20906 39 431 20532 2.06 20963 40 428 20046 2.09 20474 41 457 20157 2.22 20614 42 418 20259 2.02 20677 43 434 19882 2.14 20316 44 421 19274 2.14 19695 45 420 19750 2.08 20170 46 462 19595 2.30 20057 47 402 19407 2.03 19809 48 437 19217 2.22 19654 49 432 18835 2.24 19267 50 431 18777 2.24 19208 51 433 18991 2.23 19424 52 412 18424 2.19 18836 53 383 18046 2.08 18429 54 391 18186 2.10 18577 55 386 17807 2.12 18193 56 384 17754 2.12 18138 57 369 17668 2.05 18037 58 345 17272 1.96 17617 59 405 17199 2.30 17604 60 385 17298 2.18 17683 61 348 16840 2.02 17188 62 353 16457 2.10 16810 63 382 16434 2.27 16816 64 343 16045 2.09 16388 65 362 15682 2.26 16044 66 346 15377 2.20 15723 67 344 15285 2.20 15629 68 333 15137 2.15 15470 69 341 15118 2.21 15459 70 339 14441 2.29 14780 71 314 14259 2.15 14573 72 317 14175 2.19 14492 73 344 13944 2.41 14288 74 318 13747 2.26 14065 75 293 13536 2.12 13829 76 314 13292 2.31 13606 77 273 12672 2.11 12945 78 322 11767 2.66 12089 79 247 9720 2.48 9967 80 129 4567 2.75 4696 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5324 60178 8.13 65502 2 4954 60347 7.59 65301 3 4384 61091 6.70 65475 4 3925 60327 6.11 64252 5 4092 58862 6.50 62954 6 3880 56569 6.42 60449 7 3491 56928 5.78 60419 8 3364 56229 5.64 59593 9 3524 57074 5.82 60598 10 3416 57879 5.57 61295 11 3428 56621 5.71 60049 12 3401 56820 5.65 60221 13 3415 58142 5.55 61557 14 3205 57917 5.24 61122 15 3309 58762 5.33 62071 16 3424 59585 5.43 63009 17 3243 59317 5.18 62560 18 3093 59651 4.93 62744 19 3238 60115 5.11 63353 20 3167 59625 5.04 62792 21 3216 60139 5.08 63355 22 3147 59618 5.01 62765 23 3043 60658 4.78 63701 24 2976 60781 4.67 63757 25 3114 61188 4.84 64302 26 2939 60713 4.62 63652 27 2949 60577 4.64 63526 28 2863 61009 4.48 63872 29 2730 60866 4.29 63596 30 2890 60508 4.56 63398 31 2899 61981 4.47 64880 32 2721 60524 4.30 63245 33 2620 60666 4.14 63286 34 2656 60904 4.18 63560 35 2625 60778 4.14 63403 36 2695 60912 4.24 63607 37 2493 60807 3.94 63300 38 2508 60476 3.98 62984 39 2410 60360 3.84 62770 40 2351 60783 3.72 63134 41 2311 60059 3.71 62370 42 2226 59762 3.59 61988 43 2230 59629 3.60 61859 44 2196 58335 3.63 60531 45 2139 57977 3.56 60116 46 2089 57975 3.48 60064 47 2057 57674 3.44 59731 48 1985 57567 3.33 59552 49 1881 57432 3.17 59313 50 1860 55628 3.24 57488 51 1850 55129 3.25 56979 52 1838 55650 3.20 57488 53 1843 53761 3.31 55604 54 1717 53174 3.13 54891 55 1691 53176 3.08 54867 56 1627 52353 3.01 53980 57 1749 52336 3.23 54085 58 1576 51398 2.98 52974 59 1549 51111 2.94 52660 60 1513 50266 2.92 51779 61 1464 49198 2.89 50662 62 1430 48659 2.85 50089 63 1368 48109 2.76 49477 64 1329 48035 2.69 49364 65 1393 47020 2.88 48413 66 1334 46070 2.81 47404 67 1307 45854 2.77 47161 68 1324 45283 2.84 46607 69 1289 45139 2.78 46428 70 1214 43967 2.69 45181 71 1210 43154 2.73 44364 72 1227 42967 2.78 44194 73 1168 41862 2.71 43030 74 1191 40834 2.83 42025 75 1170 40244 2.83 41414 76 1135 39430 2.80 40565 77 1160 37656 2.99 38816 78 1099 35428 3.01 36527 79 883 29111 2.94 29994 80 411 13602 2.93 14013 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5619 3085 64.56 8704 2 5632 2652 67.99 8284 3 5088 2428 67.70 7516 4 4218 2287 64.84 6505 5 4126 2140 65.85 6266 6 4255 2087 67.09 6342 7 4242 2264 65.20 6506 8 4194 1988 67.84 6182 9 4023 1900 67.92 5923 10 4075 1880 68.43 5955 11 4118 1953 67.83 6071 12 3920 1877 67.62 5797 13 3903 1787 68.59 5690 14 3926 1754 69.12 5680 15 3945 1683 70.10 5628 16 3792 1652 69.65 5444 17 3765 1601 70.16 5366 18 3610 1591 69.41 5201 19 3547 1568 69.35 5115 20 3547 1428 71.30 4975 21 3522 1425 71.19 4947 22 3367 1421 70.32 4788 23 3340 1342 71.34 4682 24 3314 1358 70.93 4672 25 3192 1351 70.26 4543 26 3172 1323 70.57 4495 27 3163 1234 71.94 4397 28 2983 1267 70.19 4250 29 2982 1218 71.00 4200 30 2880 1119 72.02 3999 31 2903 1173 71.22 4076 32 2929 1118 72.37 4047 33 2883 1138 71.70 4021 34 2846 1036 73.31 3882 35 2635 1073 71.06 3708 36 2622 1036 71.68 3658 37 2578 1015 71.75 3593 38 2520 1000 71.59 3520 39 2509 951 72.51 3460 40 2508 951 72.51 3459 41 2366 919 72.02 3285 42 2345 890 72.49 3235 43 2281 796 74.13 3077 44 2147 861 71.38 3008 45 2182 794 73.32 2976 46 2155 800 72.93 2955 47 2016 764 72.52 2780 48 2056 777 72.57 2833 49 1950 717 73.12 2667 50 1911 715 72.77 2626 51 1899 721 72.48 2620 52 1920 714 72.89 2634 53 1906 644 74.75 2550 54 1711 705 70.82 2416 55 1691 633 72.76 2324 56 1682 614 73.26 2296 57 1650 655 71.58 2305 58 1594 594 72.85 2188 59 1573 612 71.99 2185 60 1503 554 73.07 2057 61 1536 581 72.56 2117 62 1372 539 71.79 1911 63 1382 495 73.63 1877 64 1298 503 72.07 1801 65 1255 482 72.25 1737 66 1219 520 70.10 1739 67 1232 501 71.09 1733 68 1177 487 70.73 1664 69 1141 447 71.85 1588 70 1096 445 71.12 1541 71 1135 469 70.76 1604 72 1132 398 73.99 1530 73 1041 418 71.35 1459 74 1017 413 71.12 1430 75 975 415 70.14 1390 76 913 448 67.08 1361 77 958 381 71.55 1339 78 874 388 69.26 1262 79 768 341 69.25 1109 80 545 257 67.96 802 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1643 14158 10.40 15801 2 779 12531 5.85 13310 3 745 12030 5.83 12775 4 464 11569 3.86 12033 5 493 10686 4.41 11179 6 714 10445 6.40 11159 7 392 10516 3.59 10908 8 472 10650 4.24 11122 9 374 9922 3.63 10296 10 347 9867 3.40 10214 11 313 9844 3.08 10157 12 290 9956 2.83 10246 13 305 9412 3.14 9717 14 262 9433 2.70 9695 15 306 9351 3.17 9657 16 289 9210 3.04 9499 17 271 8750 3.00 9021 18 266 8766 2.95 9032 19 248 8444 2.85 8692 20 236 8293 2.77 8529 21 220 8229 2.60 8449 22 228 7787 2.84 8015 23 215 7975 2.63 8190 24 207 7916 2.55 8123 25 214 7527 2.76 7741 26 204 7458 2.66 7662 27 183 7377 2.42 7560 28 163 7233 2.20 7396 29 186 7085 2.56 7271 30 135 6871 1.93 7006 31 145 6901 2.06 7046 32 159 6723 2.31 6882 33 161 6778 2.32 6939 34 145 6507 2.18 6652 35 138 6459 2.09 6597 36 131 6163 2.08 6294 37 97 5998 1.59 6095 38 153 5940 2.51 6093 39 128 5936 2.11 6064 40 119 5678 2.05 5797 41 111 5611 1.94 5722 42 117 5581 2.05 5698 43 105 5376 1.92 5481 44 90 5117 1.73 5207 45 105 5107 2.01 5212 46 105 5117 2.01 5222 47 100 4905 2.00 5005 48 106 4741 2.19 4847 49 96 4699 2.00 4795 50 66 4377 1.49 4443 51 80 4475 1.76 4555 52 80 4327 1.82 4407 53 85 4166 2.00 4251 54 92 4141 2.17 4233 55 59 3979 1.46 4038 56 93 3818 2.38 3911 57 66 3856 1.68 3922 58 67 3702 1.78 3769 59 76 3710 2.01 3786 60 75 3675 2.00 3750 61 78 3546 2.15 3624 62 71 3407 2.04 3478 63 58 3333 1.71 3391 64 68 3212 2.07 3280 65 69 3126 2.16 3195 66 50 2982 1.65 3032 67 59 3059 1.89 3118 68 52 2992 1.71 3044 69 59 2851 2.03 2910 70 49 2703 1.78 2752 71 46 2688 1.68 2734 72 51 2659 1.88 2710 73 49 2652 1.81 2701 74 45 2372 1.86 2417 75 56 2514 2.18 2570 76 40 2329 1.69 2369 77 52 2312 2.20 2364 78 45 2102 2.10 2147 79 40 1881 2.08 1921 80 32 1325 2.36 1357 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3994 45720 8.03 49714 2 3226 38734 7.69 41960 3 2240 37064 5.70 39304 4 1794 35477 4.81 37271 5 1986 33939 5.53 35925 6 2251 31661 6.64 33912 7 1541 31119 4.72 32660 8 1509 30504 4.71 32013 9 1479 30308 4.65 31787 10 1488 30278 4.68 31766 11 1330 28805 4.41 30135 12 1225 28629 4.10 29854 13 1175 28683 3.94 29858 14 1167 28262 3.97 29429 15 1117 28212 3.81 29329 16 1109 27942 3.82 29051 17 1006 27327 3.55 28333 18 941 26864 3.38 27805 19 937 26537 3.41 27474 20 895 25885 3.34 26780 21 884 25477 3.35 26361 22 848 24802 3.31 25650 23 775 24394 3.08 25169 24 752 24004 3.04 24756 25 793 23627 3.25 24420 26 710 23294 2.96 24004 27 683 22712 2.92 23395 28 684 22466 2.95 23150 29 607 21951 2.69 22558 30 656 21727 2.93 22383 31 624 22046 2.75 22670 32 596 20707 2.80 21303 33 568 20526 2.69 21094 34 518 20276 2.49 20794 35 504 19799 2.48 20303 36 484 19443 2.43 19927 37 474 19148 2.42 19622 38 450 18828 2.33 19278 39 431 18475 2.28 18906 40 420 18155 2.26 18575 41 416 17939 2.27 18355 42 428 17233 2.42 17661 43 393 16902 2.27 17295 44 362 16189 2.19 16551 45 376 16129 2.28 16505 46 379 15730 2.35 16109 47 350 15448 2.22 15798 48 361 15573 2.27 15934 49 363 15157 2.34 15520 50 317 14427 2.15 14744 51 336 14030 2.34 14366 52 320 14013 2.23 14333 53 293 13440 2.13 13733 54 289 13046 2.17 13335 55 313 12832 2.38 13145 56 262 12607 2.04 12869 57 273 12376 2.16 12649 58 289 11964 2.36 12253 59 264 11841 2.18 12105 60 248 11429 2.12 11677 61 248 11093 2.19 11341 62 229 10636 2.11 10865 63 251 10642 2.30 10893 64 219 10631 2.02 10850 65 212 10220 2.03 10432 66 220 9758 2.20 9978 67 212 9850 2.11 10062 68 220 9670 2.22 9890 69 200 9431 2.08 9631 70 216 9195 2.30 9411 71 207 8535 2.37 8742 72 201 8533 2.30 8734 73 201 8328 2.36 8529 74 161 8166 1.93 8327 75 178 8034 2.17 8212 76 189 7690 2.40 7879 77 168 7244 2.27 7412 78 147 6909 2.08 7056 79 132 6270 2.06 6402 80 94 4292 2.14 4386